molstar 2.3.8 → 3.0.0-dev.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (701) hide show
  1. package/build/viewer/molstar.js +1 -1
  2. package/lib/apps/docking-viewer/viewport.d.ts +2 -2
  3. package/lib/apps/docking-viewer/viewport.js +14 -14
  4. package/lib/apps/docking-viewer/viewport.js.map +1 -1
  5. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  6. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  7. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  8. package/lib/commonjs/apps/docking-viewer/viewport.js +14 -14
  9. package/lib/commonjs/apps/docking-viewer/viewport.js.map +1 -1
  10. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  11. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  12. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  13. package/lib/commonjs/extensions/anvil/representation.d.ts +20 -0
  14. package/lib/commonjs/extensions/cellpack/representation.d.ts +4 -0
  15. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +12 -0
  16. package/lib/commonjs/extensions/geo-export/controls.js +16 -18
  17. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  18. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +5 -3
  19. package/lib/commonjs/extensions/geo-export/glb-exporter.js +49 -27
  20. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  21. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
  22. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
  23. package/lib/commonjs/extensions/geo-export/mesh-exporter.js.map +1 -1
  24. package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
  25. package/lib/commonjs/extensions/geo-export/obj-exporter.js +24 -15
  26. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  27. package/lib/commonjs/extensions/geo-export/ui.js +24 -20
  28. package/lib/commonjs/extensions/geo-export/ui.js.map +1 -1
  29. package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +3 -5
  30. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +39 -30
  31. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  32. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  33. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  34. package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
  35. package/lib/commonjs/extensions/mp4-export/ui.js.map +1 -1
  36. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -2
  37. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +4 -0
  38. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
  39. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +20 -0
  40. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +22 -18
  41. package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
  42. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  43. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  44. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  45. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
  46. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  47. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  48. package/lib/commonjs/mol-geo/geometry/base.d.ts +24 -3
  49. package/lib/commonjs/mol-geo/geometry/base.js +51 -6
  50. package/lib/commonjs/mol-geo/geometry/base.js.map +1 -1
  51. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -0
  52. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -1
  53. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js.map +1 -1
  54. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +4 -0
  55. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -3
  56. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  57. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +4 -0
  58. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -1
  59. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  60. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +4 -0
  61. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -1
  62. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  63. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +18 -8
  64. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  65. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +10 -2
  66. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +188 -35
  67. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
  68. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +4 -0
  69. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -1
  70. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  71. package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
  72. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
  73. package/lib/commonjs/mol-geo/geometry/overpaint-data.js.map +1 -1
  74. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +4 -0
  75. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -1
  76. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  77. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +4 -1
  78. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -1
  79. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js.map +1 -1
  80. package/lib/commonjs/mol-geo/geometry/substance-data.d.ts +23 -0
  81. package/lib/commonjs/mol-geo/geometry/substance-data.js +68 -0
  82. package/lib/commonjs/mol-geo/geometry/substance-data.js.map +1 -0
  83. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +4 -0
  84. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -1
  85. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +8 -3
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +194 -27
  88. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
  89. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +7 -1
  90. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -1
  91. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  92. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
  93. package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
  94. package/lib/commonjs/mol-geo/geometry/transparency-data.js.map +1 -1
  95. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +2 -2
  96. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  97. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  98. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
  99. package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
  100. package/lib/commonjs/mol-gl/compute/util.js +76 -21
  101. package/lib/commonjs/mol-gl/compute/util.js.map +1 -1
  102. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +18 -0
  103. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +18 -0
  104. package/lib/commonjs/mol-gl/renderable/image.d.ts +18 -0
  105. package/lib/commonjs/mol-gl/renderable/lines.d.ts +18 -0
  106. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +18 -0
  107. package/lib/commonjs/mol-gl/renderable/points.d.ts +18 -0
  108. package/lib/commonjs/mol-gl/renderable/points.js +1 -2
  109. package/lib/commonjs/mol-gl/renderable/points.js.map +1 -1
  110. package/lib/commonjs/mol-gl/renderable/schema.d.ts +40 -5
  111. package/lib/commonjs/mol-gl/renderable/schema.js +23 -11
  112. package/lib/commonjs/mol-gl/renderable/schema.js.map +1 -1
  113. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +18 -0
  114. package/lib/commonjs/mol-gl/renderable/text.d.ts +18 -0
  115. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +32 -13
  116. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  117. package/lib/commonjs/mol-gl/renderable/texture-mesh.js.map +1 -1
  118. package/lib/commonjs/mol-gl/renderer.d.ts +9 -15
  119. package/lib/commonjs/mol-gl/renderer.js +56 -61
  120. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  121. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +3 -3
  122. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +3 -3
  123. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js.map +1 -1
  124. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  125. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js.map +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  135. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
  136. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +1 -1
  137. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +1 -1
  138. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js.map +1 -1
  139. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +3 -3
  140. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +3 -3
  141. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js.map +1 -1
  142. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  143. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  144. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
  145. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  146. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  147. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
  148. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  149. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  150. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
  151. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  152. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  153. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  154. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  155. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  156. package/lib/commonjs/mol-gl/shader/mesh.frag.js.map +1 -1
  157. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  158. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  159. package/lib/commonjs/mol-gl/shader/mesh.vert.js.map +1 -1
  160. package/lib/commonjs/mol-gl/shader-code.d.ts +0 -1
  161. package/lib/commonjs/mol-gl/shader-code.js +31 -13
  162. package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
  163. package/lib/commonjs/mol-gl/webgl/extensions.js +2 -4
  164. package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
  165. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -4
  166. package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
  167. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  168. package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
  169. package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +3 -2
  170. package/lib/commonjs/mol-gl/webgl/vertex-array.js +9 -2
  171. package/lib/commonjs/mol-gl/webgl/vertex-array.js.map +1 -1
  172. package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js +51 -0
  173. package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js.map +1 -1
  174. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +2 -2
  175. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  176. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  177. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  178. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
  179. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +15 -5
  180. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js.map +1 -1
  181. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  182. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
  183. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
  184. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +91 -0
  185. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js.map +1 -0
  186. package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +1 -1
  187. package/lib/commonjs/mol-io/reader/sdf/parser.js +12 -4
  188. package/lib/commonjs/mol-io/reader/sdf/parser.js.map +1 -1
  189. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
  190. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +9 -0
  191. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  192. package/lib/commonjs/mol-model/loci.d.ts +18 -18
  193. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +1 -1
  194. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  195. package/lib/commonjs/mol-model/structure/structure/properties.js.map +1 -1
  196. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -0
  197. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
  198. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
  199. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js.map +1 -1
  200. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +4 -0
  201. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +4 -0
  202. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +12 -0
  203. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +16 -0
  204. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  205. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +5 -0
  206. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +4 -2
  207. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  208. package/lib/commonjs/mol-plugin/commands.d.ts +11 -9
  209. package/lib/commonjs/mol-plugin/spec.js +1 -0
  210. package/lib/commonjs/mol-plugin/spec.js.map +1 -1
  211. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -0
  212. package/lib/commonjs/mol-plugin-state/actions/file.js +4 -2
  213. package/lib/commonjs/mol-plugin-state/actions/file.js.map +1 -1
  214. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  215. package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -0
  216. package/lib/commonjs/mol-plugin-state/formats/volume.js.map +1 -1
  217. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  218. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +14 -3
  219. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js.map +1 -1
  220. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.d.ts +13 -0
  221. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +126 -0
  222. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js.map +1 -0
  223. package/lib/commonjs/mol-plugin-state/manager/snapshots.js +2 -1
  224. package/lib/commonjs/mol-plugin-state/manager/snapshots.js.map +1 -1
  225. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +9 -2
  226. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +44 -22
  227. package/lib/commonjs/mol-plugin-state/manager/structure/component.js.map +1 -1
  228. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +31 -4
  229. package/lib/commonjs/mol-plugin-state/transforms/representation.js +160 -15
  230. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  231. package/lib/commonjs/mol-plugin-ui/state/common.js +10 -9
  232. package/lib/commonjs/mol-plugin-ui/state/common.js.map +1 -1
  233. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +10 -8
  234. package/lib/commonjs/mol-plugin-ui/state/snapshots.js.map +1 -1
  235. package/lib/commonjs/mol-plugin-ui/structure/selection.js +2 -1
  236. package/lib/commonjs/mol-plugin-ui/structure/selection.js.map +1 -1
  237. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -5
  238. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js.map +1 -1
  239. package/lib/commonjs/mol-repr/representation.d.ts +12 -0
  240. package/lib/commonjs/mol-repr/representation.js +50 -5
  241. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  242. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +5 -1
  243. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +5 -1
  244. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +5 -1
  245. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +5 -1
  246. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +5 -1
  247. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +4 -0
  248. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +4 -0
  249. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +4 -0
  250. package/lib/commonjs/mol-repr/shape/representation.js +8 -0
  251. package/lib/commonjs/mol-repr/shape/representation.js.map +1 -1
  252. package/lib/commonjs/mol-repr/structure/complex-representation.js +17 -4
  253. package/lib/commonjs/mol-repr/structure/complex-representation.js.map +1 -1
  254. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +25 -1
  255. package/lib/commonjs/mol-repr/structure/complex-visual.js +15 -5
  256. package/lib/commonjs/mol-repr/structure/complex-visual.js.map +1 -1
  257. package/lib/commonjs/mol-repr/structure/params.d.ts +33 -1
  258. package/lib/commonjs/mol-repr/structure/registry.d.ts +61 -5
  259. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +12 -0
  260. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +12 -0
  261. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +12 -0
  262. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +12 -0
  263. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +12 -0
  264. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +18 -6
  265. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +12 -0
  266. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +15 -3
  267. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +12 -0
  268. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +18 -6
  269. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +12 -0
  270. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +12 -0
  271. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +12 -0
  272. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +12 -0
  273. package/lib/commonjs/mol-repr/structure/units-representation.js +23 -17
  274. package/lib/commonjs/mol-repr/structure/units-representation.js.map +1 -1
  275. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +33 -1
  276. package/lib/commonjs/mol-repr/structure/units-visual.js +15 -5
  277. package/lib/commonjs/mol-repr/structure/units-visual.js.map +1 -1
  278. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +8 -0
  279. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -0
  280. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +8 -0
  281. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -0
  282. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +4 -0
  283. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +4 -0
  284. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +4 -0
  285. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +4 -0
  286. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +4 -0
  287. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +8 -0
  288. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +4 -0
  289. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +8 -0
  290. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +24 -8
  291. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +14 -12
  292. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js.map +1 -1
  293. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +4 -0
  294. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +5 -1
  295. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +6 -2
  296. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +5 -4
  297. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js.map +1 -1
  298. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +4 -0
  299. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +4 -0
  300. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +4 -0
  301. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +4 -0
  302. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +8 -0
  303. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +8 -0
  304. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +4 -0
  305. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +4 -0
  306. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -0
  307. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +4 -0
  308. package/lib/commonjs/mol-repr/visual.d.ts +24 -13
  309. package/lib/commonjs/mol-repr/visual.js +106 -8
  310. package/lib/commonjs/mol-repr/visual.js.map +1 -1
  311. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +12 -0
  312. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +24 -0
  313. package/lib/commonjs/mol-repr/volume/registry.d.ts +12 -0
  314. package/lib/commonjs/mol-repr/volume/representation.d.ts +5 -1
  315. package/lib/commonjs/mol-repr/volume/representation.js +15 -3
  316. package/lib/commonjs/mol-repr/volume/representation.js.map +1 -1
  317. package/lib/commonjs/mol-repr/volume/slice.d.ts +12 -0
  318. package/lib/commonjs/mol-state/state.js +7 -5
  319. package/lib/commonjs/mol-state/state.js.map +1 -1
  320. package/lib/commonjs/mol-task/execution/observable.js +1 -5
  321. package/lib/commonjs/mol-task/execution/observable.js.map +1 -1
  322. package/lib/commonjs/mol-theme/overpaint.js +1 -1
  323. package/lib/commonjs/mol-theme/overpaint.js.map +1 -1
  324. package/lib/commonjs/mol-theme/substance.d.ts +43 -0
  325. package/lib/commonjs/mol-theme/substance.js +132 -0
  326. package/lib/commonjs/mol-theme/substance.js.map +1 -0
  327. package/lib/commonjs/mol-util/material.d.ts +32 -0
  328. package/lib/commonjs/mol-util/material.js +51 -0
  329. package/lib/commonjs/mol-util/material.js.map +1 -0
  330. package/lib/commonjs/mol-util/number.d.ts +1 -0
  331. package/lib/commonjs/mol-util/number.js +5 -1
  332. package/lib/commonjs/mol-util/number.js.map +1 -1
  333. package/lib/extensions/anvil/behavior.d.ts +3 -2
  334. package/lib/extensions/anvil/representation.d.ts +25 -5
  335. package/lib/extensions/cellpack/representation.d.ts +6 -2
  336. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  337. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +15 -3
  338. package/lib/extensions/geo-export/controls.js +16 -18
  339. package/lib/extensions/geo-export/controls.js.map +1 -1
  340. package/lib/extensions/geo-export/glb-exporter.d.ts +5 -3
  341. package/lib/extensions/geo-export/glb-exporter.js +49 -27
  342. package/lib/extensions/geo-export/glb-exporter.js.map +1 -1
  343. package/lib/extensions/geo-export/mesh-exporter.d.ts +31 -2
  344. package/lib/extensions/geo-export/mesh-exporter.js +87 -15
  345. package/lib/extensions/geo-export/mesh-exporter.js.map +1 -1
  346. package/lib/extensions/geo-export/obj-exporter.d.ts +1 -0
  347. package/lib/extensions/geo-export/obj-exporter.js +24 -15
  348. package/lib/extensions/geo-export/obj-exporter.js.map +1 -1
  349. package/lib/extensions/geo-export/ui.js +24 -20
  350. package/lib/extensions/geo-export/ui.js.map +1 -1
  351. package/lib/extensions/geo-export/usdz-exporter.d.ts +3 -5
  352. package/lib/extensions/geo-export/usdz-exporter.js +39 -30
  353. package/lib/extensions/geo-export/usdz-exporter.js.map +1 -1
  354. package/lib/extensions/mp4-export/controls.js +1 -1
  355. package/lib/extensions/mp4-export/controls.js.map +1 -1
  356. package/lib/extensions/mp4-export/ui.js +7 -6
  357. package/lib/extensions/mp4-export/ui.js.map +1 -1
  358. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -5
  359. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +5 -1
  360. package/lib/extensions/rcsb/graphql/types.d.ts +22 -21
  361. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  362. package/lib/extensions/rcsb/validation-report/representation.d.ts +25 -5
  363. package/lib/mol-canvas3d/canvas3d.d.ts +18 -14
  364. package/lib/mol-canvas3d/helper/camera-helper.d.ts +4 -3
  365. package/lib/mol-canvas3d/helper/handle-helper.d.ts +2 -1
  366. package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
  367. package/lib/mol-canvas3d/passes/draw.js +3 -11
  368. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  369. package/lib/mol-canvas3d/passes/image.d.ts +3 -2
  370. package/lib/mol-data/int/impl/sorted-array.d.ts +1 -1
  371. package/lib/mol-geo/geometry/base.d.ts +27 -6
  372. package/lib/mol-geo/geometry/base.js +48 -5
  373. package/lib/mol-geo/geometry/base.js.map +1 -1
  374. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +5 -1
  375. package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -1
  376. package/lib/mol-geo/geometry/cylinders/cylinders.js.map +1 -1
  377. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +5 -1
  378. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +4 -3
  379. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  380. package/lib/mol-geo/geometry/image/image.d.ts +7 -3
  381. package/lib/mol-geo/geometry/image/image.js +3 -1
  382. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  383. package/lib/mol-geo/geometry/lines/lines.d.ts +5 -1
  384. package/lib/mol-geo/geometry/lines/lines.js +3 -1
  385. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  386. package/lib/mol-geo/geometry/mesh/builder/tube.js +19 -9
  387. package/lib/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  388. package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +11 -3
  389. package/lib/mol-geo/geometry/mesh/color-smoothing.js +183 -34
  390. package/lib/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
  391. package/lib/mol-geo/geometry/mesh/mesh.d.ts +5 -1
  392. package/lib/mol-geo/geometry/mesh/mesh.js +3 -1
  393. package/lib/mol-geo/geometry/mesh/mesh.js.map +1 -1
  394. package/lib/mol-geo/geometry/overpaint-data.d.ts +7 -2
  395. package/lib/mol-geo/geometry/overpaint-data.js +11 -2
  396. package/lib/mol-geo/geometry/overpaint-data.js.map +1 -1
  397. package/lib/mol-geo/geometry/points/points.d.ts +7 -3
  398. package/lib/mol-geo/geometry/points/points.js +3 -1
  399. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  400. package/lib/mol-geo/geometry/spheres/spheres.d.ts +5 -2
  401. package/lib/mol-geo/geometry/spheres/spheres.js +3 -1
  402. package/lib/mol-geo/geometry/spheres/spheres.js.map +1 -1
  403. package/lib/mol-geo/geometry/substance-data.d.ts +23 -0
  404. package/lib/mol-geo/geometry/substance-data.js +61 -0
  405. package/lib/mol-geo/geometry/substance-data.js.map +1 -0
  406. package/lib/mol-geo/geometry/text/text.d.ts +5 -1
  407. package/lib/mol-geo/geometry/text/text.js +3 -1
  408. package/lib/mol-geo/geometry/text/text.js.map +1 -1
  409. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +8 -3
  410. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +189 -26
  411. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
  412. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +8 -2
  413. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -1
  414. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  415. package/lib/mol-geo/geometry/transparency-data.d.ts +7 -2
  416. package/lib/mol-geo/geometry/transparency-data.js +11 -2
  417. package/lib/mol-geo/geometry/transparency-data.js.map +1 -1
  418. package/lib/mol-gl/_spec/renderer.spec.js +2 -2
  419. package/lib/mol-gl/_spec/renderer.spec.js.map +1 -1
  420. package/lib/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  421. package/lib/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
  422. package/lib/mol-gl/compute/util.d.ts +25 -6
  423. package/lib/mol-gl/compute/util.js +74 -21
  424. package/lib/mol-gl/compute/util.js.map +1 -1
  425. package/lib/mol-gl/renderable/cylinders.d.ts +18 -0
  426. package/lib/mol-gl/renderable/direct-volume.d.ts +18 -0
  427. package/lib/mol-gl/renderable/image.d.ts +18 -0
  428. package/lib/mol-gl/renderable/lines.d.ts +18 -0
  429. package/lib/mol-gl/renderable/mesh.d.ts +18 -0
  430. package/lib/mol-gl/renderable/points.d.ts +18 -0
  431. package/lib/mol-gl/renderable/points.js +1 -2
  432. package/lib/mol-gl/renderable/points.js.map +1 -1
  433. package/lib/mol-gl/renderable/schema.d.ts +40 -5
  434. package/lib/mol-gl/renderable/schema.js +22 -10
  435. package/lib/mol-gl/renderable/schema.js.map +1 -1
  436. package/lib/mol-gl/renderable/spheres.d.ts +18 -0
  437. package/lib/mol-gl/renderable/text.d.ts +18 -0
  438. package/lib/mol-gl/renderable/texture-mesh.d.ts +32 -13
  439. package/lib/mol-gl/renderable/texture-mesh.js +2 -2
  440. package/lib/mol-gl/renderable/texture-mesh.js.map +1 -1
  441. package/lib/mol-gl/renderer.d.ts +9 -15
  442. package/lib/mol-gl/renderer.js +55 -59
  443. package/lib/mol-gl/renderer.js.map +1 -1
  444. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +3 -3
  445. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +3 -3
  446. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js.map +1 -1
  447. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  448. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  449. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
  450. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  451. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  452. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  453. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  454. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  455. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js.map +1 -1
  456. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  457. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  458. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
  459. package/lib/mol-gl/shader/chunks/common-clip.glsl.d.ts +1 -1
  460. package/lib/mol-gl/shader/chunks/common-clip.glsl.js +1 -1
  461. package/lib/mol-gl/shader/chunks/common-clip.glsl.js.map +1 -1
  462. package/lib/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +3 -3
  463. package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +3 -3
  464. package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js.map +1 -1
  465. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  466. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  467. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
  468. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  469. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  470. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
  471. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  472. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  473. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
  474. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  475. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  476. package/lib/mol-gl/shader/direct-volume.frag.js.map +1 -1
  477. package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
  478. package/lib/mol-gl/shader/mesh.frag.js +1 -1
  479. package/lib/mol-gl/shader/mesh.frag.js.map +1 -1
  480. package/lib/mol-gl/shader/mesh.vert.d.ts +1 -1
  481. package/lib/mol-gl/shader/mesh.vert.js +1 -1
  482. package/lib/mol-gl/shader/mesh.vert.js.map +1 -1
  483. package/lib/mol-gl/shader-code.d.ts +0 -1
  484. package/lib/mol-gl/shader-code.js +31 -13
  485. package/lib/mol-gl/shader-code.js.map +1 -1
  486. package/lib/mol-gl/webgl/extensions.js +3 -5
  487. package/lib/mol-gl/webgl/extensions.js.map +1 -1
  488. package/lib/mol-gl/webgl/render-item.d.ts +1 -1
  489. package/lib/mol-gl/webgl/render-item.js +1 -4
  490. package/lib/mol-gl/webgl/render-item.js.map +1 -1
  491. package/lib/mol-gl/webgl/resources.js +1 -1
  492. package/lib/mol-gl/webgl/resources.js.map +1 -1
  493. package/lib/mol-gl/webgl/vertex-array.d.ts +3 -2
  494. package/lib/mol-gl/webgl/vertex-array.js +9 -2
  495. package/lib/mol-gl/webgl/vertex-array.js.map +1 -1
  496. package/lib/mol-io/reader/_spec/sdf.spec.js +51 -0
  497. package/lib/mol-io/reader/_spec/sdf.spec.js.map +1 -1
  498. package/lib/mol-io/reader/cif/schema/bird.d.ts +2 -2
  499. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  500. package/lib/mol-io/reader/cif/schema/ccd.d.ts +3 -3
  501. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  502. package/lib/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
  503. package/lib/mol-io/reader/cif/schema/cif-core.js +15 -5
  504. package/lib/mol-io/reader/cif/schema/cif-core.js.map +1 -1
  505. package/lib/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  506. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  507. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +12 -12
  508. package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
  509. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  510. package/lib/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
  511. package/lib/mol-io/reader/sdf/parser-v3-util.js +84 -0
  512. package/lib/mol-io/reader/sdf/parser-v3-util.js.map +1 -0
  513. package/lib/mol-io/reader/sdf/parser.d.ts +1 -1
  514. package/lib/mol-io/reader/sdf/parser.js +12 -4
  515. package/lib/mol-io/reader/sdf/parser.js.map +1 -1
  516. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
  517. package/lib/mol-math/linear-algebra/3d/vec3.js +9 -0
  518. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  519. package/lib/mol-model/loci.d.ts +20 -20
  520. package/lib/mol-model/shape/shape.d.ts +1 -1
  521. package/lib/mol-model/structure/structure/properties.d.ts +2 -2
  522. package/lib/mol-model/structure/structure/properties.js +5 -5
  523. package/lib/mol-model/structure/structure/properties.js.map +1 -1
  524. package/lib/mol-model-formats/shape/ply.d.ts +14 -6
  525. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  526. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  527. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
  528. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
  529. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js.map +1 -1
  530. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +5 -1
  531. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +5 -1
  532. package/lib/mol-model-props/computed/representations/interactions.d.ts +15 -3
  533. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +20 -4
  534. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  535. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  536. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +5 -0
  537. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +4 -2
  538. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  539. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +8 -8
  540. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +4 -4
  541. package/lib/mol-plugin/commands.d.ts +9 -7
  542. package/lib/mol-plugin/spec.js +1 -0
  543. package/lib/mol-plugin/spec.js.map +1 -1
  544. package/lib/mol-plugin/util/viewport-screenshot.d.ts +12 -9
  545. package/lib/mol-plugin/version.js +2 -2
  546. package/lib/mol-plugin-state/actions/file.js +4 -2
  547. package/lib/mol-plugin-state/actions/file.js.map +1 -1
  548. package/lib/mol-plugin-state/actions/structure.d.ts +1 -1
  549. package/lib/mol-plugin-state/animation/helpers.d.ts +5 -5
  550. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +3 -3
  551. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +3 -3
  552. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +12 -12
  553. package/lib/mol-plugin-state/builder/structure/representation.d.ts +1 -1
  554. package/lib/mol-plugin-state/formats/volume.d.ts +6 -6
  555. package/lib/mol-plugin-state/formats/volume.js +1 -0
  556. package/lib/mol-plugin-state/formats/volume.js.map +1 -1
  557. package/lib/mol-plugin-state/helpers/root-structure.d.ts +3 -3
  558. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  559. package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  560. package/lib/mol-plugin-state/helpers/structure-selection-query.js +14 -3
  561. package/lib/mol-plugin-state/helpers/structure-selection-query.js.map +1 -1
  562. package/lib/mol-plugin-state/helpers/structure-substance.d.ts +13 -0
  563. package/lib/mol-plugin-state/helpers/structure-substance.js +121 -0
  564. package/lib/mol-plugin-state/helpers/structure-substance.js.map +1 -0
  565. package/lib/mol-plugin-state/manager/interactivity.d.ts +1 -1
  566. package/lib/mol-plugin-state/manager/snapshots.js +2 -1
  567. package/lib/mol-plugin-state/manager/snapshots.js.map +1 -1
  568. package/lib/mol-plugin-state/manager/structure/component.d.ts +10 -3
  569. package/lib/mol-plugin-state/manager/structure/component.js +44 -22
  570. package/lib/mol-plugin-state/manager/structure/component.js.map +1 -1
  571. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  572. package/lib/mol-plugin-state/transforms/model.d.ts +5 -5
  573. package/lib/mol-plugin-state/transforms/representation.d.ts +45 -18
  574. package/lib/mol-plugin-state/transforms/representation.js +160 -15
  575. package/lib/mol-plugin-state/transforms/representation.js.map +1 -1
  576. package/lib/mol-plugin-ui/state/common.js +10 -9
  577. package/lib/mol-plugin-ui/state/common.js.map +1 -1
  578. package/lib/mol-plugin-ui/state/snapshots.js +10 -8
  579. package/lib/mol-plugin-ui/state/snapshots.js.map +1 -1
  580. package/lib/mol-plugin-ui/structure/measurements.d.ts +1 -1
  581. package/lib/mol-plugin-ui/structure/selection.js +2 -1
  582. package/lib/mol-plugin-ui/structure/selection.js.map +1 -1
  583. package/lib/mol-plugin-ui/viewport/simple-settings.js +2 -5
  584. package/lib/mol-plugin-ui/viewport/simple-settings.js.map +1 -1
  585. package/lib/mol-repr/representation.d.ts +12 -0
  586. package/lib/mol-repr/representation.js +50 -5
  587. package/lib/mol-repr/representation.js.map +1 -1
  588. package/lib/mol-repr/shape/loci/angle.d.ts +6 -2
  589. package/lib/mol-repr/shape/loci/common.d.ts +6 -2
  590. package/lib/mol-repr/shape/loci/dihedral.d.ts +6 -2
  591. package/lib/mol-repr/shape/loci/distance.d.ts +7 -3
  592. package/lib/mol-repr/shape/loci/label.d.ts +6 -2
  593. package/lib/mol-repr/shape/loci/orientation.d.ts +5 -1
  594. package/lib/mol-repr/shape/loci/plane.d.ts +5 -1
  595. package/lib/mol-repr/shape/model/unitcell.d.ts +5 -1
  596. package/lib/mol-repr/shape/representation.js +8 -0
  597. package/lib/mol-repr/shape/representation.js.map +1 -1
  598. package/lib/mol-repr/structure/complex-representation.js +17 -4
  599. package/lib/mol-repr/structure/complex-representation.js.map +1 -1
  600. package/lib/mol-repr/structure/complex-visual.d.ts +31 -7
  601. package/lib/mol-repr/structure/complex-visual.js +15 -5
  602. package/lib/mol-repr/structure/complex-visual.js.map +1 -1
  603. package/lib/mol-repr/structure/params.d.ts +42 -10
  604. package/lib/mol-repr/structure/registry.d.ts +81 -25
  605. package/lib/mol-repr/structure/representation/backbone.d.ts +15 -3
  606. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
  607. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +15 -3
  608. package/lib/mol-repr/structure/representation/cartoon.d.ts +15 -3
  609. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
  610. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +21 -9
  611. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +15 -3
  612. package/lib/mol-repr/structure/representation/label.d.ts +21 -9
  613. package/lib/mol-repr/structure/representation/line.d.ts +21 -9
  614. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +21 -9
  615. package/lib/mol-repr/structure/representation/orientation.d.ts +15 -3
  616. package/lib/mol-repr/structure/representation/point.d.ts +18 -6
  617. package/lib/mol-repr/structure/representation/putty.d.ts +15 -3
  618. package/lib/mol-repr/structure/representation/spacefill.d.ts +15 -3
  619. package/lib/mol-repr/structure/units-representation.js +23 -17
  620. package/lib/mol-repr/structure/units-representation.js.map +1 -1
  621. package/lib/mol-repr/structure/units-visual.d.ts +42 -10
  622. package/lib/mol-repr/structure/units-visual.js +15 -5
  623. package/lib/mol-repr/structure/units-visual.js.map +1 -1
  624. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
  625. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +6 -2
  626. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
  627. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +6 -2
  628. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +5 -1
  629. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +5 -1
  630. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +5 -1
  631. package/lib/mol-repr/structure/visual/element-cross.d.ts +5 -1
  632. package/lib/mol-repr/structure/visual/element-point.d.ts +6 -2
  633. package/lib/mol-repr/structure/visual/element-sphere.d.ts +10 -2
  634. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +5 -1
  635. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +10 -2
  636. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +28 -12
  637. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -7
  638. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js.map +1 -1
  639. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +5 -1
  640. package/lib/mol-repr/structure/visual/label-text.d.ts +7 -3
  641. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +7 -3
  642. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +3 -2
  643. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js.map +1 -1
  644. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +5 -1
  645. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +5 -1
  646. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +5 -1
  647. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +5 -1
  648. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +10 -2
  649. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +10 -2
  650. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +5 -1
  651. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +5 -1
  652. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +5 -1
  653. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +5 -1
  654. package/lib/mol-repr/structure/visual/util/bond.d.ts +6 -6
  655. package/lib/mol-repr/visual.d.ts +24 -13
  656. package/lib/mol-repr/visual.js +106 -8
  657. package/lib/mol-repr/visual.js.map +1 -1
  658. package/lib/mol-repr/volume/direct-volume.d.ts +18 -6
  659. package/lib/mol-repr/volume/isosurface.d.ts +36 -12
  660. package/lib/mol-repr/volume/registry.d.ts +19 -7
  661. package/lib/mol-repr/volume/representation.d.ts +6 -2
  662. package/lib/mol-repr/volume/representation.js +15 -3
  663. package/lib/mol-repr/volume/representation.js.map +1 -1
  664. package/lib/mol-repr/volume/slice.d.ts +21 -9
  665. package/lib/mol-state/state.js +7 -5
  666. package/lib/mol-state/state.js.map +1 -1
  667. package/lib/mol-task/execution/observable.js +1 -5
  668. package/lib/mol-task/execution/observable.js.map +1 -1
  669. package/lib/mol-theme/overpaint.js +1 -1
  670. package/lib/mol-theme/overpaint.js.map +1 -1
  671. package/lib/mol-theme/substance.d.ts +43 -0
  672. package/lib/mol-theme/substance.js +128 -0
  673. package/lib/mol-theme/substance.js.map +1 -0
  674. package/lib/mol-util/color/names.d.ts +1 -1
  675. package/lib/mol-util/material.d.ts +32 -0
  676. package/lib/mol-util/material.js +47 -0
  677. package/lib/mol-util/material.js.map +1 -0
  678. package/lib/mol-util/number.d.ts +1 -0
  679. package/lib/mol-util/number.js +3 -0
  680. package/lib/mol-util/number.js.map +1 -1
  681. package/lib/servers/model/config.d.ts +2 -2
  682. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  683. package/package.json +26 -26
  684. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +0 -24
  685. package/lib/commonjs/mol-repr/structure/visual/util/color.js +0 -100
  686. package/lib/commonjs/mol-repr/structure/visual/util/color.js.map +0 -1
  687. package/lib/mol-gl/_spec/shader.spec.d.ts +0 -0
  688. package/lib/mol-gl/_spec/shader.spec.js +0 -2
  689. package/lib/mol-gl/_spec/shader.spec.js.map +0 -1
  690. package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts +0 -35
  691. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js +0 -43
  692. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map +0 -1
  693. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts +0 -31
  694. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js +0 -48
  695. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map +0 -1
  696. package/lib/mol-repr/structure/visual/util/color.d.ts +0 -24
  697. package/lib/mol-repr/structure/visual/util/color.js +0 -94
  698. package/lib/mol-repr/structure/visual/util/color.js.map +0 -1
  699. package/lib/mol-repr/structure/visual/util/orientation.d.ts +0 -17
  700. package/lib/mol-repr/structure/visual/util/orientation.js +0 -71
  701. package/lib/mol-repr/structure/visual/util/orientation.js.map +0 -1

There are too many changes on this page to be displayed.


The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.