moflo 4.8.10 → 4.8.12

package/bin/semantic-search.mjs

@@ -1,441 +1,473 @@
 #!/usr/bin/env node
-/**
- * Semantic search using 384-dim embeddings (Xenova/all-MiniLM-L6-v2 or hash fallback)
- *
- * Query embedding MUST match stored embedding model:
- * 1. Transformers.js with all-MiniLM-L6-v2 (best quality, matches build-embeddings)
- * 2. Domain-aware semantic hash embeddings (fallback when transformers unavailable)
- *
- * Usage:
- *   node node_modules/moflo/bin/semantic-search.mjs "your search query"
- *   npx flo-search "your search query"
- *   npx flo-search "query" --limit 10
- *   npx flo-search "query" --namespace guidance
- *   npx flo-search "query" --threshold 0.3
- */
-
-import { existsSync, readFileSync } from 'fs';
-import { resolve, dirname } from 'path';
-import { mofloResolveURL } from './lib/moflo-resolve.mjs';
-const initSqlJs = (await import(mofloResolveURL('sql.js'))).default;
-
-function findProjectRoot() {
-  let dir = process.cwd();
-  const root = resolve(dir, '/');
-  while (dir !== root) {
-    if (existsSync(resolve(dir, 'package.json'))) return dir;
-    dir = dirname(dir);
-  }
-  return process.cwd();
-}
-
-const projectRoot = findProjectRoot();
-
-const DB_PATH = resolve(projectRoot, '.swarm/memory.db');
-const EMBEDDING_DIMS = 384;
-const EMBEDDING_MODEL_NEURAL = 'Xenova/all-MiniLM-L6-v2';
-const EMBEDDING_MODEL_HASH = 'domain-aware-hash-v1';
-// 'onnx' is a legacy alias for the Xenova model — treat them as compatible vector spaces
-const NEURAL_ALIASES = new Set([EMBEDDING_MODEL_NEURAL, 'onnx']);
-
-// Parse args
-const args = process.argv.slice(2);
-const query = args.find(a => !a.startsWith('--'));
-const limit = args.includes('--limit') ? parseInt(args[args.indexOf('--limit') + 1]) : 5;
-const namespace = args.includes('--namespace') ? args[args.indexOf('--namespace') + 1] : null;
-const threshold = args.includes('--threshold') ? parseFloat(args[args.indexOf('--threshold') + 1]) : 0.3;
-const json = args.includes('--json');
-const debug = args.includes('--debug');
-
-if (!query) {
-  console.error('Usage: npx flo-search "your query" [--limit N] [--namespace X] [--threshold N]');
-  process.exit(1);
-}
-
-// ============================================================================
-// Transformers.js Neural Embeddings (primary — matches build-embeddings.mjs)
-// ============================================================================
-
-let pipeline = null;
-let useTransformers = false;
-
-async function loadTransformersModel() {
-  try {
-    const { env, pipeline: createPipeline } = await import(mofloResolveURL('@xenova/transformers'));
-    env.allowLocalModels = false;
-    env.backends.onnx.wasm.numThreads = 1;
-
-    pipeline = await createPipeline('feature-extraction', EMBEDDING_MODEL_NEURAL, {
-      quantized: false,
-    });
-
-    useTransformers = true;
-    if (debug) console.error('[semantic-search] Using Transformers.js neural model');
-    return true;
-  } catch (err) {
-    if (debug) console.error(`[semantic-search] Transformers.js unavailable: ${err.message?.split('\n')[0]}`);
-    useTransformers = false;
-    return false;
-  }
-}
-
-async function generateNeuralEmbedding(text) {
-  if (!pipeline) return null;
-  try {
-    const output = await pipeline(text, { pooling: 'mean', normalize: true });
-    return Array.from(output.data);
-  } catch {
-    return null;
-  }
-}
-
-// ============================================================================
-// Domain-Aware Semantic Hash Embeddings (fallback)
-// ============================================================================
-
-const DOMAIN_CLUSTERS = {
-  database: ['typeorm', 'mongodb', 'database', 'entity', 'schema', 'table', 'collection',
-             'query', 'sql', 'nosql', 'orm', 'model', 'migration', 'repository', 'column',
-             'relation', 'foreign', 'primary', 'index', 'constraint', 'transaction',
-             'mikroorm', 'mikro', 'postgresql', 'postgres', 'soft', 'delete', 'deletedat'],
-  frontend: ['react', 'component', 'ui', 'styling', 'css', 'html', 'jsx', 'tsx', 'frontend',
-             'material', 'mui', 'tailwind', 'dom', 'render', 'hook', 'state', 'props',
-             'redux', 'context', 'styled', 'emotion', 'theme', 'layout', 'responsive',
-             'mantis', 'syncfusion', 'scheduler', 'i18n', 'intl', 'locale'],
-  backend: ['fastify', 'api', 'route', 'handler', 'rest', 'endpoint', 'server', 'controller',
-            'middleware', 'request', 'response', 'http', 'express', 'nest', 'graphql',
-            'websocket', 'socket', 'cors', 'auth', 'jwt', 'session', 'cookie',
-            'awilix', 'dependency', 'injection', 'scope'],
-  testing: ['test', 'testing', 'vitest', 'jest', 'mock', 'spy', 'assert', 'expect', 'describe',
-            'it', 'spec', 'unit', 'integration', 'e2e', 'playwright', 'cypress', 'coverage',
-            'fixture', 'stub', 'fake', 'snapshot', 'beforeeach', 'aftereach',
-            'anti-pattern', 'antipattern', 'mocking'],
-  tenancy: ['tenant', 'tenancy', 'companyid', 'company', 'isolation', 'multi', 'multitenant',
-            'organization', 'workspace', 'account', 'customer', 'client', 'subdomain'],
-  security: ['security', 'auth', 'authentication', 'authorization', 'permission', 'role',
-             'access', 'token', 'jwt', 'oauth', 'password', 'encrypt', 'hash', 'salt',
-             'csrf', 'xss', 'injection', 'sanitize', 'validate', 'rbac'],
-  patterns: ['pattern', 'service', 'factory', 'singleton', 'decorator', 'adapter', 'facade',
-             'observer', 'strategy', 'command', 'repository', 'usecase', 'domain', 'ddd',
-             'clean', 'architecture', 'solid', 'dry', 'kiss', 'functional', 'pipeasync'],
-  workflow: ['workflow', 'pipeline', 'ci', 'cd', 'deploy', 'build', 'actions',
-             'hook', 'trigger', 'job', 'step', 'artifact', 'release', 'version', 'tag'],
-  memory: ['memory', 'cache', 'store', 'persist', 'storage', 'redis', 'session', 'state',
-           'buffer', 'queue', 'stack', 'heap', 'gc', 'leak', 'embedding', 'vector', 'hnsw',
-           'semantic', 'search', 'index', 'retrieval'],
-  agent: ['agent', 'swarm', 'coordinator', 'orchestrator', 'task', 'worker', 'spawn',
-          'parallel', 'concurrent', 'async', 'promise', 'queue', 'priority', 'schedule'],
-  github: ['github', 'issue', 'branch', 'pr', 'pull', 'request', 'merge', 'commit', 'push',
-           'clone', 'fork', 'remote', 'origin', 'main', 'master', 'checkout', 'rebase',
-           'squash', 'repository', 'repo', 'gh', 'git', 'assignee', 'label', 'mandatory',
-           'checklist', 'closes', 'fixes', 'conventional', 'feat', 'refactor'],
-  documentation: ['guidance', 'documentation', 'docs', 'readme', 'guide', 'tutorial',
-                  'reference', 'standard', 'convention', 'rule', 'policy', 'template',
-                  'example', 'usage', 'instruction', 'meta', 'index', 'umbrella', 'claude',
-                  'optimized', 'audience', 'structure', 'format', 'markdown']
-};
-
-const COMMON_WORDS = new Set([
-  'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being', 'have', 'has', 'had',
-  'do', 'does', 'did', 'will', 'would', 'could', 'should', 'may', 'might', 'must', 'shall',
-  'can', 'need', 'to', 'of', 'in', 'for', 'on', 'with', 'at', 'by', 'from', 'as', 'into',
-  'through', 'during', 'before', 'after', 'above', 'below', 'between', 'under', 'and', 'but',
-  'or', 'nor', 'so', 'yet', 'both', 'either', 'neither', 'not', 'only', 'own', 'same', 'than',
-  'too', 'very', 'just', 'also', 'this', 'that', 'these', 'those', 'it', 'its', 'if', 'then',
-  'else', 'when', 'where', 'why', 'how', 'all', 'each', 'every', 'any', 'some', 'no', 'yes',
-  'use', 'using', 'used', 'uses', 'get', 'set', 'new', 'see', 'like', 'make', 'made'
-]);
-
-function hash(str, seed = 0) {
-  let h = seed ^ str.length;
-  for (let i = 0; i < str.length; i++) {
-    h ^= str.charCodeAt(i);
-    h = Math.imul(h, 0x5bd1e995);
-    h ^= h >>> 15;
-  }
-  return h >>> 0;
-}
-
-// Pre-compute domain signatures
-const domainSignatures = {};
-for (const [domain, keywords] of Object.entries(DOMAIN_CLUSTERS)) {
-  const sig = new Float32Array(EMBEDDING_DIMS);
-  for (const kw of keywords) {
-    for (let h = 0; h < 2; h++) {
-      const idx = hash(kw + '_dom_' + domain, h) % EMBEDDING_DIMS;
-      sig[idx] = 1;
-    }
-  }
-  domainSignatures[domain] = sig;
-}
-
-function semanticHashEmbed(text, dims = EMBEDDING_DIMS) {
-  const vec = new Float32Array(dims);
-  const lowerText = text.toLowerCase();
-  const words = lowerText.replace(/[^a-z0-9\s]/g, ' ').split(/\s+/).filter(w => w.length > 1);
-
-  if (words.length === 0) return vec;
-
-  // Add domain signatures
-  for (const [domain, keywords] of Object.entries(DOMAIN_CLUSTERS)) {
-    let matchCount = 0;
-    for (const kw of keywords) {
-      if (lowerText.includes(kw)) matchCount++;
-    }
-    if (matchCount > 0) {
-      const weight = Math.min(2.0, 0.5 + matchCount * 0.3);
-      const sig = domainSignatures[domain];
-      for (let i = 0; i < dims; i++) {
-        vec[i] += sig[i] * weight;
-      }
-    }
-  }
-
-  // Add word features
-  for (const word of words) {
-    const isCommon = COMMON_WORDS.has(word);
-    const weight = isCommon ? 0.2 : (word.length > 6 ? 0.8 : 0.5);
-    for (let h = 0; h < 3; h++) {
-      const idx = hash(word, h * 17) % dims;
-      const sign = (hash(word, h * 31 + 1) % 2 === 0) ? 1 : -1;
-      vec[idx] += sign * weight;
-    }
-  }
-
-  // Add bigrams
-  for (let i = 0; i < words.length - 1; i++) {
-    if (COMMON_WORDS.has(words[i]) && COMMON_WORDS.has(words[i + 1])) continue;
-    const bigram = words[i] + '_' + words[i + 1];
-    const idx = hash(bigram, 42) % dims;
-    const sign = (hash(bigram, 43) % 2 === 0) ? 1 : -1;
-    vec[idx] += sign * 0.4;
-  }
-
-  // Add trigrams
-  for (let i = 0; i < words.length - 2; i++) {
-    const trigram = words[i] + '_' + words[i + 1] + '_' + words[i + 2];
-    const idx = hash(trigram, 99) % dims;
-    const sign = (hash(trigram, 100) % 2 === 0) ? 1 : -1;
-    vec[idx] += sign * 0.3;
-  }
-
-  // L2 normalize
-  let norm = 0;
-  for (let i = 0; i < dims; i++) norm += vec[i] * vec[i];
-  norm = Math.sqrt(norm);
-  if (norm > 0) {
-    for (let i = 0; i < dims; i++) vec[i] /= norm;
-  }
-
-  return vec;
-}
-
-// ============================================================================
-// Unified Embedding Generator (matches stored embeddings)
-// ============================================================================
-
-/**
- * Generate query embedding using the SAME model as stored embeddings.
- * Checks what model was used for stored entries and matches it.
- */
-async function generateQueryEmbedding(queryText, db) {
-  // Check what model the stored entries use
-  let modelCheckSql = `SELECT embedding_model, COUNT(*) as cnt FROM memory_entries
-     WHERE status = 'active' AND embedding IS NOT NULL AND embedding != ''
-     ${namespace ? "AND namespace = ?" : ""}
-     GROUP BY embedding_model ORDER BY cnt DESC LIMIT 1`;
-  const modelStmt = db.prepare(modelCheckSql);
-  modelStmt.bind(namespace ? [namespace] : []);
-  const modelCheck = modelStmt.step() ? modelStmt.getAsObject() : null;
-  modelStmt.free();
-
-  const storedModel = modelCheck?.embedding_model || EMBEDDING_MODEL_HASH;
-
-  if (debug) console.error(`[semantic-search] Stored model: ${storedModel}`);
-
-  // If stored embeddings are neural, try to use neural for query too
-  // Accept both canonical name and legacy 'onnx' tag (both use the same Xenova pipeline)
-  if (storedModel === EMBEDDING_MODEL_NEURAL || storedModel === 'onnx') {
-    await loadTransformersModel();
-    if (useTransformers) {
-      const neuralEmb = await generateNeuralEmbedding(queryText);
-      if (neuralEmb && neuralEmb.length === EMBEDDING_DIMS) {
-        return { embedding: neuralEmb, model: EMBEDDING_MODEL_NEURAL };
-      }
-    }
-    // Neural failed — warn about model mismatch
-    if (!json) {
-      console.error('[semantic-search] WARNING: Stored embeddings use neural model but Transformers.js unavailable.');
-      console.error('[semantic-search] Results may be poor. Run: npx flo-embeddings --force');
-    }
-  }
-
-  // Use hash embeddings (either matching stored hash model, or as fallback)
-  const hashEmb = Array.from(semanticHashEmbed(queryText));
-  return { embedding: hashEmb, model: EMBEDDING_MODEL_HASH };
-}
-
-// ============================================================================
-// Search Functions
-// ============================================================================
-
-function cosineSimilarity(a, b) {
-  if (!a || !b || a.length !== b.length) return 0;
-  let dot = 0;
-  for (let i = 0; i < a.length; i++) {
-    dot += a[i] * b[i];
-  }
-  return dot; // Already L2 normalized
-}
-
-async function getDb() {
-  if (!existsSync(DB_PATH)) {
-    throw new Error(`Database not found: ${DB_PATH}`);
-  }
-  const SQL = await initSqlJs();
-  const buffer = readFileSync(DB_PATH);
-  return new SQL.Database(buffer);
-}
-
-async function semanticSearch(queryText, options = {}) {
-  const { limit = 5, namespace = null, threshold = 0.3 } = options;
-  const startTime = performance.now();
-
-  const db = await getDb();
-
-  // Generate query embedding matching the stored model
-  const { embedding: queryEmbedding, model: queryModel } = await generateQueryEmbedding(queryText, db);
-
-  if (debug) console.error(`[semantic-search] Query model: ${queryModel}`);
-
-  // Get all entries with embeddings
-  let sql = `
-    SELECT id, key, namespace, content, embedding, embedding_model, metadata
-    FROM memory_entries
-    WHERE status = 'active' AND embedding IS NOT NULL AND embedding != ''
-  `;
-  const params = [];
-
-  if (namespace) {
-    sql += ` AND namespace = ?`;
-    params.push(namespace);
-  }
-
-  const stmt = db.prepare(sql);
-  stmt.bind(params);
-
-  // Calculate similarity scores
-  const results = [];
-  while (stmt.step()) {
-    const entry = stmt.getAsObject();
-    try {
-      const storedIsNeural = NEURAL_ALIASES.has(entry.embedding_model);
-      const queryIsNeural = NEURAL_ALIASES.has(queryModel);
-      if (entry.embedding_model && entry.embedding_model !== queryModel && !(storedIsNeural && queryIsNeural)) continue;
-
-      const embedding = JSON.parse(entry.embedding);
-      if (!Array.isArray(embedding) || embedding.length !== EMBEDDING_DIMS) continue;
-
-      const similarity = cosineSimilarity(queryEmbedding, embedding);
-
-      if (similarity >= threshold) {
-        let metadata = {};
-        try {
-          metadata = JSON.parse(entry.metadata || '{}');
-        } catch {}
-
-        results.push({
-          key: entry.key,
-          namespace: entry.namespace,
-          score: similarity,
-          preview: entry.content.substring(0, 150).replace(/\n/g, ' '),
-          type: metadata.type || 'unknown',
-          parentDoc: metadata.parentDoc || null,
-          chunkTitle: metadata.chunkTitle || null,
-        });
-      }
-    } catch {
-      // Skip entries with invalid embeddings
-    }
-  }
-  stmt.free();
-
-  db.close();
-
-  // Sort by similarity (descending) and limit
-  results.sort((a, b) => b.score - a.score);
-  const topResults = results.slice(0, limit);
-
-  const searchTime = performance.now() - startTime;
-
-  return {
-    query: queryText,
-    results: topResults,
-    totalMatches: results.length,
-    searchTime: `${searchTime.toFixed(0)}ms`,
-    indexType: 'vector-cosine',
-    model: queryModel,
-  };
-}
-
-// ============================================================================
-// Main
-// ============================================================================
-
-async function main() {
-  if (!json) {
-    console.log('');
-    console.log(`[semantic-search] Query: "${query}"`);
-  }
-
-  try {
-    const results = await semanticSearch(query, { limit, namespace, threshold });
-
-    if (json) {
-      console.log(JSON.stringify(results, null, 2));
-      return;
-    }
-
-    console.log(`[semantic-search] Found ${results.totalMatches} matches (${results.searchTime}) [${results.model}]`);
-    console.log('');
-
-    if (results.results.length === 0) {
-      console.log('No results found above threshold. Try lowering --threshold or broadening your query.');
-      return;
-    }
-
-    // Display results
-    console.log('┌─────────────────────────────────────────────────────────────────────────────┐');
-    console.log('│ Rank │ Score │ Key                          │ Type   │ Preview             │');
-    console.log('├─────────────────────────────────────────────────────────────────────────────┤');
-
-    for (let i = 0; i < results.results.length; i++) {
-      const r = results.results[i];
-      const rank = String(i + 1).padStart(4);
-      const score = r.score.toFixed(3);
-      const key = r.key.substring(0, 28).padEnd(28);
-      const type = (r.type || '').substring(0, 6).padEnd(6);
-      const preview = r.preview.substring(0, 18).padEnd(18);
-
-      console.log(`│ ${rank} │ ${score} │ ${key} │ ${type} │ ${preview}… │`);
-    }
-
-    console.log('└─────────────────────────────────────────────────────────────────────────────┘');
-
-    // Show chunk context
-    console.log('');
-    console.log('Top result details:');
-    const top = results.results[0];
-    console.log(`  Key: ${top.key}`);
-    console.log(`  Score: ${top.score.toFixed(4)}`);
-    if (top.chunkTitle) console.log(`  Section: ${top.chunkTitle}`);
-    if (top.parentDoc) console.log(`  Parent: ${top.parentDoc}`);
-    console.log(`  Preview: ${top.preview}...`);
-
-  } catch (err) {
-    console.error(`[semantic-search] Error: ${err.message}`);
-    process.exit(1);
-  }
-}
-
-main();
+/**
+ * Semantic search using 384-dim embeddings (Xenova/all-MiniLM-L6-v2 or hash fallback)
+ *
+ * Query embedding MUST match stored embedding model:
+ * 1. Transformers.js with all-MiniLM-L6-v2 (best quality, matches build-embeddings)
+ * 2. Domain-aware semantic hash embeddings (fallback when transformers unavailable)
+ *
+ * Usage:
+ *   node node_modules/moflo/bin/semantic-search.mjs "your search query"
+ *   npx flo-search "your search query"
+ *   npx flo-search "query" --limit 10
+ *   npx flo-search "query" --namespace guidance
+ *   npx flo-search "query" --threshold 0.3
+ */
+
+import { existsSync, readFileSync } from 'fs';
+import { resolve, dirname } from 'path';
+import { mofloResolveURL } from './lib/moflo-resolve.mjs';
+const initSqlJs = (await import(mofloResolveURL('sql.js'))).default;
+
+function findProjectRoot() {
+  let dir = process.cwd();
+  const root = resolve(dir, '/');
+  while (dir !== root) {
+    if (existsSync(resolve(dir, 'package.json'))) return dir;
+    dir = dirname(dir);
+  }
+  return process.cwd();
+}
+
+const projectRoot = findProjectRoot();
+
+const DB_PATH = resolve(projectRoot, '.swarm/memory.db');
+const EMBEDDING_DIMS = 384;
+const EMBEDDING_MODEL_NEURAL = 'Xenova/all-MiniLM-L6-v2';
+const EMBEDDING_MODEL_HASH = 'domain-aware-hash-v1';
+// 'onnx' is a legacy alias for the Xenova model — treat them as compatible vector spaces
+const NEURAL_ALIASES = new Set([EMBEDDING_MODEL_NEURAL, 'onnx']);
+
+// Parse args
+const args = process.argv.slice(2);
+const query = args.find(a => !a.startsWith('--'));
+const limit = args.includes('--limit') ? parseInt(args[args.indexOf('--limit') + 1]) : 5;
+let namespace = args.includes('--namespace') ? args[args.indexOf('--namespace') + 1] : null;
+const withTests = args.includes('--with-tests');
+const threshold = args.includes('--threshold') ? parseFloat(args[args.indexOf('--threshold') + 1]) : 0.3;
+const json = args.includes('--json');
+const debug = args.includes('--debug');
+
+// Auto-routing: when query mentions test-related terms, also search tests namespace
+const TEST_KEYWORDS = /\b(test|spec|coverage|assert|mock|stub|fixture|describe|jest|vitest|mocha|e2e|integration test)\b/i;
+
+if (!query) {
+  console.error('Usage: npx flo-search "your query" [--limit N] [--namespace X] [--threshold N]');
+  process.exit(1);
+}
+
+// ============================================================================
+// Transformers.js Neural Embeddings (primary — matches build-embeddings.mjs)
+// ============================================================================
+
+let pipeline = null;
+let useTransformers = false;
+
+async function loadTransformersModel() {
+  try {
+    const { env, pipeline: createPipeline } = await import(mofloResolveURL('@xenova/transformers'));
+    env.allowLocalModels = false;
+    env.backends.onnx.wasm.numThreads = 1;
+
+    pipeline = await createPipeline('feature-extraction', EMBEDDING_MODEL_NEURAL, {
+      quantized: false,
+    });
+
+    useTransformers = true;
+    if (debug) console.error('[semantic-search] Using Transformers.js neural model');
+    return true;
+  } catch (err) {
+    if (debug) console.error(`[semantic-search] Transformers.js unavailable: ${err.message?.split('\n')[0]}`);
+    useTransformers = false;
+    return false;
+  }
+}
+
+async function generateNeuralEmbedding(text) {
+  if (!pipeline) return null;
+  try {
+    const output = await pipeline(text, { pooling: 'mean', normalize: true });
+    return Array.from(output.data);
+  } catch {
+    return null;
+  }
+}
+
+// ============================================================================
+// Domain-Aware Semantic Hash Embeddings (fallback)
+// ============================================================================
+
+const DOMAIN_CLUSTERS = {
+  database: ['typeorm', 'mongodb', 'database', 'entity', 'schema', 'table', 'collection',
+             'query', 'sql', 'nosql', 'orm', 'model', 'migration', 'repository', 'column',
+             'relation', 'foreign', 'primary', 'index', 'constraint', 'transaction',
+             'mikroorm', 'mikro', 'postgresql', 'postgres', 'soft', 'delete', 'deletedat'],
+  frontend: ['react', 'component', 'ui', 'styling', 'css', 'html', 'jsx', 'tsx', 'frontend',
+             'material', 'mui', 'tailwind', 'dom', 'render', 'hook', 'state', 'props',
+             'redux', 'context', 'styled', 'emotion', 'theme', 'layout', 'responsive',
+             'mantis', 'syncfusion', 'scheduler', 'i18n', 'intl', 'locale'],
+  backend: ['fastify', 'api', 'route', 'handler', 'rest', 'endpoint', 'server', 'controller',
+            'middleware', 'request', 'response', 'http', 'express', 'nest', 'graphql',
+            'websocket', 'socket', 'cors', 'auth', 'jwt', 'session', 'cookie',
+            'awilix', 'dependency', 'injection', 'scope'],
+  testing: ['test', 'testing', 'vitest', 'jest', 'mock', 'spy', 'assert', 'expect', 'describe',
+            'it', 'spec', 'unit', 'integration', 'e2e', 'playwright', 'cypress', 'coverage',
+            'fixture', 'stub', 'fake', 'snapshot', 'beforeeach', 'aftereach',
+            'anti-pattern', 'antipattern', 'mocking'],
+  tenancy: ['tenant', 'tenancy', 'companyid', 'company', 'isolation', 'multi', 'multitenant',
+            'organization', 'workspace', 'account', 'customer', 'client', 'subdomain'],
+  security: ['security', 'auth', 'authentication', 'authorization', 'permission', 'role',
+             'access', 'token', 'jwt', 'oauth', 'password', 'encrypt', 'hash', 'salt',
+             'csrf', 'xss', 'injection', 'sanitize', 'validate', 'rbac'],
+  patterns: ['pattern', 'service', 'factory', 'singleton', 'decorator', 'adapter', 'facade',
+             'observer', 'strategy', 'command', 'repository', 'usecase', 'domain', 'ddd',
+             'clean', 'architecture', 'solid', 'dry', 'kiss', 'functional', 'pipeasync'],
+  workflow: ['workflow', 'pipeline', 'ci', 'cd', 'deploy', 'build', 'actions',
+             'hook', 'trigger', 'job', 'step', 'artifact', 'release', 'version', 'tag'],
+  memory: ['memory', 'cache', 'store', 'persist', 'storage', 'redis', 'session', 'state',
+           'buffer', 'queue', 'stack', 'heap', 'gc', 'leak', 'embedding', 'vector', 'hnsw',
+           'semantic', 'search', 'index', 'retrieval'],
+  agent: ['agent', 'swarm', 'coordinator', 'orchestrator', 'task', 'worker', 'spawn',
+          'parallel', 'concurrent', 'async', 'promise', 'queue', 'priority', 'schedule'],
+  github: ['github', 'issue', 'branch', 'pr', 'pull', 'request', 'merge', 'commit', 'push',
+           'clone', 'fork', 'remote', 'origin', 'main', 'master', 'checkout', 'rebase',
+           'squash', 'repository', 'repo', 'gh', 'git', 'assignee', 'label', 'mandatory',
+           'checklist', 'closes', 'fixes', 'conventional', 'feat', 'refactor'],
+  documentation: ['guidance', 'documentation', 'docs', 'readme', 'guide', 'tutorial',
+                  'reference', 'standard', 'convention', 'rule', 'policy', 'template',
+                  'example', 'usage', 'instruction', 'meta', 'index', 'umbrella', 'claude',
+                  'optimized', 'audience', 'structure', 'format', 'markdown']
+};
+
+const COMMON_WORDS = new Set([
+  'the', 'a', 'an', 'is', 'are', 'was', 'were', 'be', 'been', 'being', 'have', 'has', 'had',
+  'do', 'does', 'did', 'will', 'would', 'could', 'should', 'may', 'might', 'must', 'shall',
+  'can', 'need', 'to', 'of', 'in', 'for', 'on', 'with', 'at', 'by', 'from', 'as', 'into',
+  'through', 'during', 'before', 'after', 'above', 'below', 'between', 'under', 'and', 'but',
+  'or', 'nor', 'so', 'yet', 'both', 'either', 'neither', 'not', 'only', 'own', 'same', 'than',
+  'too', 'very', 'just', 'also', 'this', 'that', 'these', 'those', 'it', 'its', 'if', 'then',
+  'else', 'when', 'where', 'why', 'how', 'all', 'each', 'every', 'any', 'some', 'no', 'yes',
+  'use', 'using', 'used', 'uses', 'get', 'set', 'new', 'see', 'like', 'make', 'made'
+]);
+
+function hash(str, seed = 0) {
+  let h = seed ^ str.length;
+  for (let i = 0; i < str.length; i++) {
+    h ^= str.charCodeAt(i);
+    h = Math.imul(h, 0x5bd1e995);
+    h ^= h >>> 15;
+  }
+  return h >>> 0;
+}
+
+// Pre-compute domain signatures
+const domainSignatures = {};
+for (const [domain, keywords] of Object.entries(DOMAIN_CLUSTERS)) {
+  const sig = new Float32Array(EMBEDDING_DIMS);
+  for (const kw of keywords) {
+    for (let h = 0; h < 2; h++) {
+      const idx = hash(kw + '_dom_' + domain, h) % EMBEDDING_DIMS;
+      sig[idx] = 1;
+    }
+  }
+  domainSignatures[domain] = sig;
+}
+
+function semanticHashEmbed(text, dims = EMBEDDING_DIMS) {
+  const vec = new Float32Array(dims);
+  const lowerText = text.toLowerCase();
+  const words = lowerText.replace(/[^a-z0-9\s]/g, ' ').split(/\s+/).filter(w => w.length > 1);
+
+  if (words.length === 0) return vec;
+
+  // Add domain signatures
+  for (const [domain, keywords] of Object.entries(DOMAIN_CLUSTERS)) {
+    let matchCount = 0;
+    for (const kw of keywords) {
+      if (lowerText.includes(kw)) matchCount++;
+    }
+    if (matchCount > 0) {
+      const weight = Math.min(2.0, 0.5 + matchCount * 0.3);
+      const sig = domainSignatures[domain];
+      for (let i = 0; i < dims; i++) {
+        vec[i] += sig[i] * weight;
+      }
+    }
+  }
+
+  // Add word features
+  for (const word of words) {
+    const isCommon = COMMON_WORDS.has(word);
+    const weight = isCommon ? 0.2 : (word.length > 6 ? 0.8 : 0.5);
+    for (let h = 0; h < 3; h++) {
+      const idx = hash(word, h * 17) % dims;
+      const sign = (hash(word, h * 31 + 1) % 2 === 0) ? 1 : -1;
+      vec[idx] += sign * weight;
+    }
+  }
+
+  // Add bigrams
+  for (let i = 0; i < words.length - 1; i++) {
+    if (COMMON_WORDS.has(words[i]) && COMMON_WORDS.has(words[i + 1])) continue;
+    const bigram = words[i] + '_' + words[i + 1];
+    const idx = hash(bigram, 42) % dims;
+    const sign = (hash(bigram, 43) % 2 === 0) ? 1 : -1;
+    vec[idx] += sign * 0.4;
+  }
+
+  // Add trigrams
+  for (let i = 0; i < words.length - 2; i++) {
+    const trigram = words[i] + '_' + words[i + 1] + '_' + words[i + 2];
+    const idx = hash(trigram, 99) % dims;
+    const sign = (hash(trigram, 100) % 2 === 0) ? 1 : -1;
+    vec[idx] += sign * 0.3;
+  }
+
+  // L2 normalize
+  let norm = 0;
+  for (let i = 0; i < dims; i++) norm += vec[i] * vec[i];
+  norm = Math.sqrt(norm);
+  if (norm > 0) {
+    for (let i = 0; i < dims; i++) vec[i] /= norm;
+  }
+
+  return vec;
+}
+
+// ============================================================================
+// Unified Embedding Generator (matches stored embeddings)
+// ============================================================================
+
+/**
+ * Generate query embedding using the SAME model as stored embeddings.
+ * Checks what model was used for stored entries and matches it.
+ */
+async function generateQueryEmbedding(queryText, db) {
+  // Check what model the stored entries use
+  let modelCheckSql = `SELECT embedding_model, COUNT(*) as cnt FROM memory_entries
+     WHERE status = 'active' AND embedding IS NOT NULL AND embedding != ''
+     ${namespace ? "AND namespace = ?" : ""}
+     GROUP BY embedding_model ORDER BY cnt DESC LIMIT 1`;
+  const modelStmt = db.prepare(modelCheckSql);
+  modelStmt.bind(namespace ? [namespace] : []);
+  const modelCheck = modelStmt.step() ? modelStmt.getAsObject() : null;
+  modelStmt.free();
+
+  const storedModel = modelCheck?.embedding_model || EMBEDDING_MODEL_HASH;
+
+  if (debug) console.error(`[semantic-search] Stored model: ${storedModel}`);
+
+  // If stored embeddings are neural, try to use neural for query too
+  // Accept both canonical name and legacy 'onnx' tag (both use the same Xenova pipeline)
+  if (storedModel === EMBEDDING_MODEL_NEURAL || storedModel === 'onnx') {
+    await loadTransformersModel();
+    if (useTransformers) {
+      const neuralEmb = await generateNeuralEmbedding(queryText);
+      if (neuralEmb && neuralEmb.length === EMBEDDING_DIMS) {
+        return { embedding: neuralEmb, model: EMBEDDING_MODEL_NEURAL };
+      }
+    }
+    // Neural failed — warn about model mismatch
+    if (!json) {
+      console.error('[semantic-search] WARNING: Stored embeddings use neural model but Transformers.js unavailable.');
+      console.error('[semantic-search] Results may be poor. Run: npx flo-embeddings --force');
+    }
+  }
+
+  // Use hash embeddings (either matching stored hash model, or as fallback)
+  const hashEmb = Array.from(semanticHashEmbed(queryText));
+  return { embedding: hashEmb, model: EMBEDDING_MODEL_HASH };
+}
+
+// ============================================================================
+// Search Functions
+// ============================================================================
+
+function cosineSimilarity(a, b) {
+  if (!a || !b || a.length !== b.length) return 0;
+  let dot = 0;
+  for (let i = 0; i < a.length; i++) {
+    dot += a[i] * b[i];
+  }
+  return dot; // Already L2 normalized
+}
+
+async function getDb() {
+  if (!existsSync(DB_PATH)) {
+    throw new Error(`Database not found: ${DB_PATH}`);
+  }
+  const SQL = await initSqlJs();
+  const buffer = readFileSync(DB_PATH);
+  return new SQL.Database(buffer);
+}
+
+async function semanticSearch(queryText, options = {}) {
+  const { limit = 5, namespace = null, threshold = 0.3 } = options;
+  const startTime = performance.now();
+
+  const db = await getDb();
+
+  // Generate query embedding matching the stored model
+  const { embedding: queryEmbedding, model: queryModel } = await generateQueryEmbedding(queryText, db);
+
+  if (debug) console.error(`[semantic-search] Query model: ${queryModel}`);
+
+  // Get all entries with embeddings
+  let sql = `
+    SELECT id, key, namespace, content, embedding, embedding_model, metadata
+    FROM memory_entries
+    WHERE status = 'active' AND embedding IS NOT NULL AND embedding != ''
+  `;
+  const params = [];
+
+  if (namespace) {
+    sql += ` AND namespace = ?`;
+    params.push(namespace);
+  }
+
+  const stmt = db.prepare(sql);
+  stmt.bind(params);
+
+  // Calculate similarity scores
+  const results = [];
+  while (stmt.step()) {
+    const entry = stmt.getAsObject();
+    try {
+      const storedIsNeural = NEURAL_ALIASES.has(entry.embedding_model);
+      const queryIsNeural = NEURAL_ALIASES.has(queryModel);
+      if (entry.embedding_model && entry.embedding_model !== queryModel && !(storedIsNeural && queryIsNeural)) continue;
+
+      const embedding = JSON.parse(entry.embedding);
+      if (!Array.isArray(embedding) || embedding.length !== EMBEDDING_DIMS) continue;
+
+      const similarity = cosineSimilarity(queryEmbedding, embedding);
+
+      if (similarity >= threshold) {
+        let metadata = {};
+        try {
+          metadata = JSON.parse(entry.metadata || '{}');
+        } catch {}
+
+        results.push({
+          key: entry.key,
+          namespace: entry.namespace,
+          score: similarity,
+          preview: entry.content.substring(0, 150).replace(/\n/g, ' '),
+          type: metadata.type || 'unknown',
+          parentDoc: metadata.parentDoc || null,
+          chunkTitle: metadata.chunkTitle || null,
+        });
+      }
+    } catch {
+      // Skip entries with invalid embeddings
+    }
+  }
+  stmt.free();
+
+  db.close();
+
+  // Sort by similarity (descending) and limit
+  results.sort((a, b) => b.score - a.score);
+  const topResults = results.slice(0, limit);
+
+  const searchTime = performance.now() - startTime;
+
+  return {
+    query: queryText,
+    results: topResults,
+    totalMatches: results.length,
+    searchTime: `${searchTime.toFixed(0)}ms`,
+    indexType: 'vector-cosine',
+    model: queryModel,
+  };
+}
+
+// ============================================================================
+// Main
+// ============================================================================
+
+async function main() {
+  if (!json) {
+    console.log('');
+    console.log(`[semantic-search] Query: "${query}"`);
+  }
+
+  try {
+    // --with-tests: search both the specified namespace (or code-map) and tests
+    // Auto-route: if query contains test keywords and no namespace specified, also search tests
+    const autoRouteTests = !namespace && TEST_KEYWORDS.test(query);
+    let results;
+
+    if (withTests || autoRouteTests) {
+      const primaryNs = namespace || 'code-map';
+      const primaryResults = await semanticSearch(query, { limit, namespace: primaryNs, threshold });
+      const testResults = await semanticSearch(query, { limit, namespace: 'tests', threshold });
+
+      // Merge and re-sort by score
+      const merged = [...primaryResults.results, ...testResults.results]
+        .sort((a, b) => b.score - a.score)
+        .slice(0, limit);
+
+      results = {
+        ...primaryResults,
+        results: merged,
+        totalMatches: primaryResults.totalMatches + testResults.totalMatches,
+        searchTime: `${parseInt(primaryResults.searchTime) + parseInt(testResults.searchTime)}ms`,
+        namespaces: [primaryNs, 'tests'],
+      };
+
+      if (!json && autoRouteTests) {
+        console.log(`[semantic-search] Auto-routed to tests namespace (query contains test keywords)`);
+      }
+    } else {
+      results = await semanticSearch(query, { limit, namespace, threshold });
+    }
+
+    if (json) {
+      console.log(JSON.stringify(results, null, 2));
+      return;
+    }
+
+    console.log(`[semantic-search] Found ${results.totalMatches} matches (${results.searchTime}) [${results.model}]`);
+    console.log('');
+
+    if (results.results.length === 0) {
+      console.log('No results found above threshold. Try lowering --threshold or broadening your query.');
+      return;
+    }
+
+    // Display results
+    console.log('┌─────────────────────────────────────────────────────────────────────────────┐');
+    console.log('│ Rank │ Score │ Key                          │ Type   │ Preview             │');
+    console.log('├─────────────────────────────────────────────────────────────────────────────┤');
+
+    for (let i = 0; i < results.results.length; i++) {
+      const r = results.results[i];
+      const rank = String(i + 1).padStart(4);
+      const score = r.score.toFixed(3);
+      const key = r.key.substring(0, 28).padEnd(28);
+      const type = (r.type || '').substring(0, 6).padEnd(6);
+      const preview = r.preview.substring(0, 18).padEnd(18);
+
+      console.log(`│ ${rank} │ ${score} │ ${key} │ ${type} │ ${preview}… │`);
+    }
+
+    console.log('└─────────────────────────────────────────────────────────────────────────────┘');
+
+    // Show chunk context
+    console.log('');
+    console.log('Top result details:');
+    const top = results.results[0];
+    console.log(`  Key: ${top.key}`);
+    console.log(`  Score: ${top.score.toFixed(4)}`);
+    if (top.chunkTitle) console.log(`  Section: ${top.chunkTitle}`);
+    if (top.parentDoc) console.log(`  Parent: ${top.parentDoc}`);
+    console.log(`  Preview: ${top.preview}...`);
+
+  } catch (err) {
+    console.error(`[semantic-search] Error: ${err.message}`);
+    process.exit(1);
+  }
+}
+
+main();