mindforge-cc 9.0.0 → 10.0.1

package/.agent/bin/lib/verify.cjs

@@ -1,851 +0,0 @@
-/**
- * Verify — Verification suite, consistency, and health validation
- */
-
-const fs = require('fs');
-const path = require('path');
-const os = require('os');
-const { safeReadFile, loadConfig, normalizePhaseName, execGit, findPhaseInternal, getMilestoneInfo, stripShippedMilestones, extractCurrentMilestone, planningDir, planningRoot, output, error } = require('./core.cjs');
-const { extractFrontmatter, parseMustHavesBlock } = require('./frontmatter.cjs');
-const { writeStateMd } = require('./state.cjs');
-
-function cmdVerifySummary(cwd, summaryPath, checkFileCount, raw) {
-  if (!summaryPath) {
-    error('summary-path required');
-  }
-
-  const fullPath = path.join(cwd, summaryPath);
-  const checkCount = checkFileCount || 2;
-
-  // Check 1: Summary exists
-  if (!fs.existsSync(fullPath)) {
-    const result = {
-      passed: false,
-      checks: {
-        summary_exists: false,
-        files_created: { checked: 0, found: 0, missing: [] },
-        commits_exist: false,
-        self_check: 'not_found',
-      },
-      errors: ['SUMMARY.md not found'],
-    };
-    output(result, raw, 'failed');
-    return;
-  }
-
-  const content = fs.readFileSync(fullPath, 'utf-8');
-  const errors = [];
-
-  // Check 2: Spot-check files mentioned in summary
-  const mentionedFiles = new Set();
-  const patterns = [
-    /`([^`]+\.[a-zA-Z]+)`/g,
-    /(?:Created|Modified|Added|Updated|Edited):\s*`?([^\s`]+\.[a-zA-Z]+)`?/gi,
-  ];
-
-  for (const pattern of patterns) {
-    let m;
-    while ((m = pattern.exec(content)) !== null) {
-      const filePath = m[1];
-      if (filePath && !filePath.startsWith('http') && filePath.includes('/')) {
-        mentionedFiles.add(filePath);
-      }
-    }
-  }
-
-  const filesToCheck = Array.from(mentionedFiles).slice(0, checkCount);
-  const missing = [];
-  for (const file of filesToCheck) {
-    if (!fs.existsSync(path.join(cwd, file))) {
-      missing.push(file);
-    }
-  }
-
-  // Check 3: Commits exist
-  const commitHashPattern = /\b[0-9a-f]{7,40}\b/g;
-  const hashes = content.match(commitHashPattern) || [];
-  let commitsExist = false;
-  if (hashes.length > 0) {
-    for (const hash of hashes.slice(0, 3)) {
-      const result = execGit(cwd, ['cat-file', '-t', hash]);
-      if (result.exitCode === 0 && result.stdout === 'commit') {
-        commitsExist = true;
-        break;
-      }
-    }
-  }
-
-  // Check 4: Self-check section
-  let selfCheck = 'not_found';
-  const selfCheckPattern = /##\s*(?:Self[- ]?Check|Verification|Quality Check)/i;
-  if (selfCheckPattern.test(content)) {
-    const passPattern = /(?:all\s+)?(?:pass|✓|✅|complete|succeeded)/i;
-    const failPattern = /(?:fail|✗|❌|incomplete|blocked)/i;
-    const checkSection = content.slice(content.search(selfCheckPattern));
-    if (failPattern.test(checkSection)) {
-      selfCheck = 'failed';
-    } else if (passPattern.test(checkSection)) {
-      selfCheck = 'passed';
-    }
-  }
-
-  if (missing.length > 0) errors.push('Missing files: ' + missing.join(', '));
-  if (!commitsExist && hashes.length > 0) errors.push('Referenced commit hashes not found in git history');
-  if (selfCheck === 'failed') errors.push('Self-check section indicates failure');
-
-  const checks = {
-    summary_exists: true,
-    files_created: { checked: filesToCheck.length, found: filesToCheck.length - missing.length, missing },
-    commits_exist: commitsExist,
-    self_check: selfCheck,
-  };
-
-  const passed = missing.length === 0 && selfCheck !== 'failed';
-  const result = { passed, checks, errors };
-  output(result, raw, passed ? 'passed' : 'failed');
-}
-
-function cmdVerifyPlanStructure(cwd, filePath, raw) {
-  if (!filePath) { error('file path required'); }
-  const fullPath = path.isAbsolute(filePath) ? filePath : path.join(cwd, filePath);
-  const content = safeReadFile(fullPath);
-  if (!content) { output({ error: 'File not found', path: filePath }, raw); return; }
-
-  const fm = extractFrontmatter(content);
-  const errors = [];
-  const warnings = [];
-
-  // Check required frontmatter fields
-  const required = ['phase', 'plan', 'type', 'wave', 'depends_on', 'files_modified', 'autonomous', 'must_haves'];
-  for (const field of required) {
-    if (fm[field] === undefined) errors.push(`Missing required frontmatter field: ${field}`);
-  }
-
-  // Parse and check task elements
-  const taskPattern = /<task[^>]*>([\s\S]*?)<\/task>/g;
-  const tasks = [];
-  let taskMatch;
-  while ((taskMatch = taskPattern.exec(content)) !== null) {
-    const taskContent = taskMatch[1];
-    const nameMatch = taskContent.match(/<name>([\s\S]*?)<\/name>/);
-    const taskName = nameMatch ? nameMatch[1].trim() : 'unnamed';
-    const hasFiles = /<files>/.test(taskContent);
-    const hasAction = /<action>/.test(taskContent);
-    const hasVerify = /<verify>/.test(taskContent);
-    const hasDone = /<done>/.test(taskContent);
-
-    if (!nameMatch) errors.push('Task missing <name> element');
-    if (!hasAction) errors.push(`Task '${taskName}' missing <action>`);
-    if (!hasVerify) warnings.push(`Task '${taskName}' missing <verify>`);
-    if (!hasDone) warnings.push(`Task '${taskName}' missing <done>`);
-    if (!hasFiles) warnings.push(`Task '${taskName}' missing <files>`);
-
-    tasks.push({ name: taskName, hasFiles, hasAction, hasVerify, hasDone });
-  }
-
-  if (tasks.length === 0) warnings.push('No <task> elements found');
-
-  // Wave/depends_on consistency
-  if (fm.wave && parseInt(fm.wave) > 1 && (!fm.depends_on || (Array.isArray(fm.depends_on) && fm.depends_on.length === 0))) {
-    warnings.push('Wave > 1 but depends_on is empty');
-  }
-
-  // Autonomous/checkpoint consistency
-  const hasCheckpoints = /<task\s+type=["']?checkpoint/.test(content);
-  if (hasCheckpoints && fm.autonomous !== 'false' && fm.autonomous !== false) {
-    errors.push('Has checkpoint tasks but autonomous is not false');
-  }
-
-  output({
-    valid: errors.length === 0,
-    errors,
-    warnings,
-    task_count: tasks.length,
-    tasks,
-    frontmatter_fields: Object.keys(fm),
-  }, raw, errors.length === 0 ? 'valid' : 'invalid');
-}
-
-function cmdVerifyPhaseCompleteness(cwd, phase, raw) {
-  if (!phase) { error('phase required'); }
-  const phaseInfo = findPhaseInternal(cwd, phase);
-  if (!phaseInfo || !phaseInfo.found) {
-    output({ error: 'Phase not found', phase }, raw);
-    return;
-  }
-
-  const errors = [];
-  const warnings = [];
-  const phaseDir = path.join(cwd, phaseInfo.directory);
-
-  // List plans and summaries
-  let files;
-  try { files = fs.readdirSync(phaseDir); } catch { output({ error: 'Cannot read phase directory' }, raw); return; }
-
-  const plans = files.filter(f => f.match(/-PLAN\.md$/i));
-  const summaries = files.filter(f => f.match(/-SUMMARY\.md$/i));
-
-  // Extract plan IDs (everything before -PLAN.md)
-  const planIds = new Set(plans.map(p => p.replace(/-PLAN\.md$/i, '')));
-  const summaryIds = new Set(summaries.map(s => s.replace(/-SUMMARY\.md$/i, '')));
-
-  // Plans without summaries
-  const incompletePlans = [...planIds].filter(id => !summaryIds.has(id));
-  if (incompletePlans.length > 0) {
-    errors.push(`Plans without summaries: ${incompletePlans.join(', ')}`);
-  }
-
-  // Summaries without plans (orphans)
-  const orphanSummaries = [...summaryIds].filter(id => !planIds.has(id));
-  if (orphanSummaries.length > 0) {
-    warnings.push(`Summaries without plans: ${orphanSummaries.join(', ')}`);
-  }
-
-  output({
-    complete: errors.length === 0,
-    phase: phaseInfo.phase_number,
-    plan_count: plans.length,
-    summary_count: summaries.length,
-    incomplete_plans: incompletePlans,
-    orphan_summaries: orphanSummaries,
-    errors,
-    warnings,
-  }, raw, errors.length === 0 ? 'complete' : 'incomplete');
-}
-
-function cmdVerifyReferences(cwd, filePath, raw) {
-  if (!filePath) { error('file path required'); }
-  const fullPath = path.isAbsolute(filePath) ? filePath : path.join(cwd, filePath);
-  const content = safeReadFile(fullPath);
-  if (!content) { output({ error: 'File not found', path: filePath }, raw); return; }
-
-  const found = [];
-  const missing = [];
-
-  // Find @-references: @path/to/file (must contain / to be a file path)
-  const atRefs = content.match(/@([^\s\n,)]+\/[^\s\n,)]+)/g) || [];
-  for (const ref of atRefs) {
-    const cleanRef = ref.slice(1); // remove @
-    const resolved = cleanRef.startsWith('~/')
-      ? path.join(process.env.HOME || '', cleanRef.slice(2))
-      : path.join(cwd, cleanRef);
-    if (fs.existsSync(resolved)) {
-      found.push(cleanRef);
-    } else {
-      missing.push(cleanRef);
-    }
-  }
-
-  // Find backtick file paths that look like real paths (contain / and have extension)
-  const backtickRefs = content.match(/`([^`]+\/[^`]+\.[a-zA-Z]{1,10})`/g) || [];
-  for (const ref of backtickRefs) {
-    const cleanRef = ref.slice(1, -1); // remove backticks
-    if (cleanRef.startsWith('http') || cleanRef.includes('${') || cleanRef.includes('{{')) continue;
-    if (found.includes(cleanRef) || missing.includes(cleanRef)) continue; // dedup
-    const resolved = path.join(cwd, cleanRef);
-    if (fs.existsSync(resolved)) {
-      found.push(cleanRef);
-    } else {
-      missing.push(cleanRef);
-    }
-  }
-
-  output({
-    valid: missing.length === 0,
-    found: found.length,
-    missing,
-    total: found.length + missing.length,
-  }, raw, missing.length === 0 ? 'valid' : 'invalid');
-}
-
-function cmdVerifyCommits(cwd, hashes, raw) {
-  if (!hashes || hashes.length === 0) { error('At least one commit hash required'); }
-
-  const valid = [];
-  const invalid = [];
-  for (const hash of hashes) {
-    const result = execGit(cwd, ['cat-file', '-t', hash]);
-    if (result.exitCode === 0 && result.stdout.trim() === 'commit') {
-      valid.push(hash);
-    } else {
-      invalid.push(hash);
-    }
-  }
-
-  output({
-    all_valid: invalid.length === 0,
-    valid,
-    invalid,
-    total: hashes.length,
-  }, raw, invalid.length === 0 ? 'valid' : 'invalid');
-}
-
-function cmdVerifyArtifacts(cwd, planFilePath, raw) {
-  if (!planFilePath) { error('plan file path required'); }
-  const fullPath = path.isAbsolute(planFilePath) ? planFilePath : path.join(cwd, planFilePath);
-  const content = safeReadFile(fullPath);
-  if (!content) { output({ error: 'File not found', path: planFilePath }, raw); return; }
-
-  const artifacts = parseMustHavesBlock(content, 'artifacts');
-  if (artifacts.length === 0) {
-    output({ error: 'No must_haves.artifacts found in frontmatter', path: planFilePath }, raw);
-    return;
-  }
-
-  const results = [];
-  for (const artifact of artifacts) {
-    if (typeof artifact === 'string') continue; // skip simple string items
-    const artPath = artifact.path;
-    if (!artPath) continue;
-
-    const artFullPath = path.join(cwd, artPath);
-    const exists = fs.existsSync(artFullPath);
-    const check = { path: artPath, exists, issues: [], passed: false };
-
-    if (exists) {
-      const fileContent = safeReadFile(artFullPath) || '';
-      const lineCount = fileContent.split('\n').length;
-
-      if (artifact.min_lines && lineCount < artifact.min_lines) {
-        check.issues.push(`Only ${lineCount} lines, need ${artifact.min_lines}`);
-      }
-      if (artifact.contains && !fileContent.includes(artifact.contains)) {
-        check.issues.push(`Missing pattern: ${artifact.contains}`);
-      }
-      if (artifact.exports) {
-        const exports = Array.isArray(artifact.exports) ? artifact.exports : [artifact.exports];
-        for (const exp of exports) {
-          if (!fileContent.includes(exp)) check.issues.push(`Missing export: ${exp}`);
-        }
-      }
-      check.passed = check.issues.length === 0;
-    } else {
-      check.issues.push('File not found');
-    }
-
-    results.push(check);
-  }
-
-  const passed = results.filter(r => r.passed).length;
-  output({
-    all_passed: passed === results.length,
-    passed,
-    total: results.length,
-    artifacts: results,
-  }, raw, passed === results.length ? 'valid' : 'invalid');
-}
-
-function cmdVerifyKeyLinks(cwd, planFilePath, raw) {
-  if (!planFilePath) { error('plan file path required'); }
-  const fullPath = path.isAbsolute(planFilePath) ? planFilePath : path.join(cwd, planFilePath);
-  const content = safeReadFile(fullPath);
-  if (!content) { output({ error: 'File not found', path: planFilePath }, raw); return; }
-
-  const keyLinks = parseMustHavesBlock(content, 'key_links');
-  if (keyLinks.length === 0) {
-    output({ error: 'No must_haves.key_links found in frontmatter', path: planFilePath }, raw);
-    return;
-  }
-
-  const results = [];
-  for (const link of keyLinks) {
-    if (typeof link === 'string') continue;
-    const check = { from: link.from, to: link.to, via: link.via || '', verified: false, detail: '' };
-
-    const sourceContent = safeReadFile(path.join(cwd, link.from || ''));
-    if (!sourceContent) {
-      check.detail = 'Source file not found';
-    } else if (link.pattern) {
-      try {
-        const regex = new RegExp(link.pattern);
-        if (regex.test(sourceContent)) {
-          check.verified = true;
-          check.detail = 'Pattern found in source';
-        } else {
-          const targetContent = safeReadFile(path.join(cwd, link.to || ''));
-          if (targetContent && regex.test(targetContent)) {
-            check.verified = true;
-            check.detail = 'Pattern found in target';
-          } else {
-            check.detail = `Pattern "${link.pattern}" not found in source or target`;
-          }
-        }
-      } catch {
-        check.detail = `Invalid regex pattern: ${link.pattern}`;
-      }
-    } else {
-      // No pattern: just check source references target
-      if (sourceContent.includes(link.to || '')) {
-        check.verified = true;
-        check.detail = 'Target referenced in source';
-      } else {
-        check.detail = 'Target not referenced in source';
-      }
-    }
-
-    results.push(check);
-  }
-
-  const verified = results.filter(r => r.verified).length;
-  output({
-    all_verified: verified === results.length,
-    verified,
-    total: results.length,
-    links: results,
-  }, raw, verified === results.length ? 'valid' : 'invalid');
-}
-
-function cmdValidateConsistency(cwd, raw) {
-  const roadmapPath = path.join(planningDir(cwd), 'ROADMAP.md');
-  const phasesDir = path.join(planningDir(cwd), 'phases');
-  const errors = [];
-  const warnings = [];
-
-  // Check for ROADMAP
-  if (!fs.existsSync(roadmapPath)) {
-    errors.push('ROADMAP.md not found');
-    output({ passed: false, errors, warnings }, raw, 'failed');
-    return;
-  }
-
-  const roadmapContentRaw = fs.readFileSync(roadmapPath, 'utf-8');
-  const roadmapContent = extractCurrentMilestone(roadmapContentRaw, cwd);
-
-  // Extract phases from ROADMAP (archived milestones already stripped)
-  const roadmapPhases = new Set();
-  const phasePattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:/gi;
-  let m;
-  while ((m = phasePattern.exec(roadmapContent)) !== null) {
-    roadmapPhases.add(m[1]);
-  }
-
-  // Get phases on disk
-  const diskPhases = new Set();
-  try {
-    const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    const dirs = entries.filter(e => e.isDirectory()).map(e => e.name);
-    for (const dir of dirs) {
-      const dm = dir.match(/^(\d+[A-Z]?(?:\.\d+)*)/i);
-      if (dm) diskPhases.add(dm[1]);
-    }
-  } catch { /* intentionally empty */ }
-
-  // Check: phases in ROADMAP but not on disk
-  for (const p of roadmapPhases) {
-    if (!diskPhases.has(p) && !diskPhases.has(normalizePhaseName(p))) {
-      warnings.push(`Phase ${p} in ROADMAP.md but no directory on disk`);
-    }
-  }
-
-  // Check: phases on disk but not in ROADMAP
-  for (const p of diskPhases) {
-    const unpadded = String(parseInt(p, 10));
-    if (!roadmapPhases.has(p) && !roadmapPhases.has(unpadded)) {
-      warnings.push(`Phase ${p} exists on disk but not in ROADMAP.md`);
-    }
-  }
-
-  // Check: sequential phase numbers (integers only, skip in custom naming mode)
-  const config = loadConfig(cwd);
-  if (config.phase_naming !== 'custom') {
-    const integerPhases = [...diskPhases]
-      .filter(p => !p.includes('.'))
-      .map(p => parseInt(p, 10))
-      .sort((a, b) => a - b);
-
-    for (let i = 1; i < integerPhases.length; i++) {
-      if (integerPhases[i] !== integerPhases[i - 1] + 1) {
-        warnings.push(`Gap in phase numbering: ${integerPhases[i - 1]} → ${integerPhases[i]}`);
-      }
-    }
-  }
-
-  // Check: plan numbering within phases
-  try {
-    const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    const dirs = entries.filter(e => e.isDirectory()).map(e => e.name).sort();
-
-    for (const dir of dirs) {
-      const phaseFiles = fs.readdirSync(path.join(phasesDir, dir));
-      const plans = phaseFiles.filter(f => f.endsWith('-PLAN.md')).sort();
-
-      // Extract plan numbers
-      const planNums = plans.map(p => {
-        const pm = p.match(/-(\d{2})-PLAN\.md$/);
-        return pm ? parseInt(pm[1], 10) : null;
-      }).filter(n => n !== null);
-
-      for (let i = 1; i < planNums.length; i++) {
-        if (planNums[i] !== planNums[i - 1] + 1) {
-          warnings.push(`Gap in plan numbering in ${dir}: plan ${planNums[i - 1]} → ${planNums[i]}`);
-        }
-      }
-
-      // Check: plans without summaries (completed plans)
-      const summaries = phaseFiles.filter(f => f.endsWith('-SUMMARY.md'));
-      const planIds = new Set(plans.map(p => p.replace('-PLAN.md', '')));
-      const summaryIds = new Set(summaries.map(s => s.replace('-SUMMARY.md', '')));
-
-      // Summary without matching plan is suspicious
-      for (const sid of summaryIds) {
-        if (!planIds.has(sid)) {
-          warnings.push(`Summary ${sid}-SUMMARY.md in ${dir} has no matching PLAN.md`);
-        }
-      }
-    }
-  } catch { /* intentionally empty */ }
-
-  // Check: frontmatter in plans has required fields
-  try {
-    const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    const dirs = entries.filter(e => e.isDirectory()).map(e => e.name);
-
-    for (const dir of dirs) {
-      const phaseFiles = fs.readdirSync(path.join(phasesDir, dir));
-      const plans = phaseFiles.filter(f => f.endsWith('-PLAN.md'));
-
-      for (const plan of plans) {
-        const content = fs.readFileSync(path.join(phasesDir, dir, plan), 'utf-8');
-        const fm = extractFrontmatter(content);
-
-        if (!fm.wave) {
-          warnings.push(`${dir}/${plan}: missing 'wave' in frontmatter`);
-        }
-      }
-    }
-  } catch { /* intentionally empty */ }
-
-  const passed = errors.length === 0;
-  output({ passed, errors, warnings, warning_count: warnings.length }, raw, passed ? 'passed' : 'failed');
-}
-
-function cmdValidateHealth(cwd, options, raw) {
-  // Guard: detect if CWD is the home directory (likely accidental)
-  const resolved = path.resolve(cwd);
-  if (resolved === os.homedir()) {
-    output({
-      status: 'error',
-      errors: [{ code: 'E010', message: `CWD is home directory (${resolved}) — health check would read the wrong .planning/ directory. Run from your project root instead.`, fix: 'cd into your project directory and retry' }],
-      warnings: [],
-      info: [{ code: 'I010', message: `Resolved CWD: ${resolved}` }],
-      repairable_count: 0,
-    }, raw);
-    return;
-  }
-
-  const planBase = planningDir(cwd);
-  const planRoot = planningRoot(cwd);
-  const projectPath = path.join(planRoot, 'PROJECT.md');
-  const roadmapPath = path.join(planBase, 'ROADMAP.md');
-  const statePath = path.join(planBase, 'STATE.md');
-  const configPath = path.join(planRoot, 'config.json');
-  const phasesDir = path.join(planBase, 'phases');
-
-  const errors = [];
-  const warnings = [];
-  const info = [];
-  const repairs = [];
-
-  // Helper to add issue
-  const addIssue = (severity, code, message, fix, repairable = false) => {
-    const issue = { code, message, fix, repairable };
-    if (severity === 'error') errors.push(issue);
-    else if (severity === 'warning') warnings.push(issue);
-    else info.push(issue);
-  };
-
-  // ─── Check 1: .planning/ exists ───────────────────────────────────────────
-  if (!fs.existsSync(planBase)) {
-    addIssue('error', 'E001', '.planning/ directory not found', 'Run /mindforge-new-project to initialize');
-    output({
-      status: 'broken',
-      errors,
-      warnings,
-      info,
-      repairable_count: 0,
-    }, raw);
-    return;
-  }
-
-  // ─── Check 2: PROJECT.md exists and has required sections ─────────────────
-  if (!fs.existsSync(projectPath)) {
-    addIssue('error', 'E002', 'PROJECT.md not found', 'Run /mindforge-new-project to create');
-  } else {
-    const content = fs.readFileSync(projectPath, 'utf-8');
-    const requiredSections = ['## What This Is', '## Core Value', '## Requirements'];
-    for (const section of requiredSections) {
-      if (!content.includes(section)) {
-        addIssue('warning', 'W001', `PROJECT.md missing section: ${section}`, 'Add section manually');
-      }
-    }
-  }
-
-  // ─── Check 3: ROADMAP.md exists ───────────────────────────────────────────
-  if (!fs.existsSync(roadmapPath)) {
-    addIssue('error', 'E003', 'ROADMAP.md not found', 'Run /mindforge-new-milestone to create roadmap');
-  }
-
-  // ─── Check 4: STATE.md exists and references valid phases ─────────────────
-  if (!fs.existsSync(statePath)) {
-    addIssue('error', 'E004', 'STATE.md not found', 'Run /mindforge-health --repair to regenerate', true);
-    repairs.push('regenerateState');
-  } else {
-    const stateContent = fs.readFileSync(statePath, 'utf-8');
-    // Extract phase references from STATE.md
-    const phaseRefs = [...stateContent.matchAll(/[Pp]hase\s+(\d+(?:\.\d+)*)/g)].map(m => m[1]);
-    // Get disk phases
-    const diskPhases = new Set();
-    try {
-      const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-      for (const e of entries) {
-        if (e.isDirectory()) {
-          const m = e.name.match(/^(\d+(?:\.\d+)*)/);
-          if (m) diskPhases.add(m[1]);
-        }
-      }
-    } catch { /* intentionally empty */ }
-    // Check for invalid references
-    for (const ref of phaseRefs) {
-      const normalizedRef = String(parseInt(ref, 10)).padStart(2, '0');
-      if (!diskPhases.has(ref) && !diskPhases.has(normalizedRef) && !diskPhases.has(String(parseInt(ref, 10)))) {
-        // Only warn if phases dir has any content (not just an empty project)
-        if (diskPhases.size > 0) {
-          addIssue(
-            'warning',
-            'W002',
-            `STATE.md references phase ${ref}, but only phases ${[...diskPhases].sort().join(', ')} exist`,
-            'Review STATE.md manually before changing it; /mindforge-health --repair will not overwrite an existing STATE.md for phase mismatches'
-          );
-        }
-      }
-    }
-  }
-
-  // ─── Check 5: config.json valid JSON + valid schema ───────────────────────
-  if (!fs.existsSync(configPath)) {
-    addIssue('warning', 'W003', 'config.json not found', 'Run /mindforge-health --repair to create with defaults', true);
-    repairs.push('createConfig');
-  } else {
-    try {
-      const raw = fs.readFileSync(configPath, 'utf-8');
-      const parsed = JSON.parse(raw);
-      // Validate known fields
-      const validProfiles = ['quality', 'balanced', 'budget', 'inherit'];
-      if (parsed.model_profile && !validProfiles.includes(parsed.model_profile)) {
-        addIssue('warning', 'W004', `config.json: invalid model_profile "${parsed.model_profile}"`, `Valid values: ${validProfiles.join(', ')}`);
-      }
-    } catch (err) {
-      addIssue('error', 'E005', `config.json: JSON parse error - ${err.message}`, 'Run /mindforge-health --repair to reset to defaults', true);
-      repairs.push('resetConfig');
-    }
-  }
-
-  // ─── Check 5b: Nyquist validation key presence ──────────────────────────
-  if (fs.existsSync(configPath)) {
-    try {
-      const configRaw = fs.readFileSync(configPath, 'utf-8');
-      const configParsed = JSON.parse(configRaw);
-      if (configParsed.workflow && configParsed.workflow.nyquist_validation === undefined) {
-        addIssue('warning', 'W008', 'config.json: workflow.nyquist_validation absent (defaults to enabled but agents may skip)', 'Run /mindforge-health --repair to add key', true);
-        if (!repairs.includes('addNyquistKey')) repairs.push('addNyquistKey');
-      }
-    } catch { /* intentionally empty */ }
-  }
-
-  // ─── Check 6: Phase directory naming (NN-name format) ─────────────────────
-  try {
-    const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    for (const e of entries) {
-      if (e.isDirectory() && !e.name.match(/^\d{2}(?:\.\d+)*-[\w-]+$/)) {
-        addIssue('warning', 'W005', `Phase directory "${e.name}" doesn't follow NN-name format`, 'Rename to match pattern (e.g., 01-setup)');
-      }
-    }
-  } catch { /* intentionally empty */ }
-
-  // ─── Check 7: Orphaned plans (PLAN without SUMMARY) ───────────────────────
-  try {
-    const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    for (const e of entries) {
-      if (!e.isDirectory()) continue;
-      const phaseFiles = fs.readdirSync(path.join(phasesDir, e.name));
-      const plans = phaseFiles.filter(f => f.endsWith('-PLAN.md') || f === 'PLAN.md');
-      const summaries = phaseFiles.filter(f => f.endsWith('-SUMMARY.md') || f === 'SUMMARY.md');
-      const summaryBases = new Set(summaries.map(s => s.replace('-SUMMARY.md', '').replace('SUMMARY.md', '')));
-
-      for (const plan of plans) {
-        const planBase = plan.replace('-PLAN.md', '').replace('PLAN.md', '');
-        if (!summaryBases.has(planBase)) {
-          addIssue('info', 'I001', `${e.name}/${plan} has no SUMMARY.md`, 'May be in progress');
-        }
-      }
-    }
-  } catch { /* intentionally empty */ }
-
-  // ─── Check 7b: Nyquist VALIDATION.md consistency ────────────────────────
-  try {
-    const phaseEntries = fs.readdirSync(phasesDir, { withFileTypes: true });
-    for (const e of phaseEntries) {
-      if (!e.isDirectory()) continue;
-      const phaseFiles = fs.readdirSync(path.join(phasesDir, e.name));
-      const hasResearch = phaseFiles.some(f => f.endsWith('-RESEARCH.md'));
-      const hasValidation = phaseFiles.some(f => f.endsWith('-VALIDATION.md'));
-      if (hasResearch && !hasValidation) {
-        const researchFile = phaseFiles.find(f => f.endsWith('-RESEARCH.md'));
-        const researchContent = fs.readFileSync(path.join(phasesDir, e.name, researchFile), 'utf-8');
-        if (researchContent.includes('## Validation Architecture')) {
-          addIssue('warning', 'W009', `Phase ${e.name}: has Validation Architecture in RESEARCH.md but no VALIDATION.md`, 'Re-run /mindforge-plan-phase with --research to regenerate');
-        }
-      }
-    }
-  } catch { /* intentionally empty */ }
-
-  // ─── Check 8: Run existing consistency checks ─────────────────────────────
-  // Inline subset of cmdValidateConsistency
-  if (fs.existsSync(roadmapPath)) {
-    const roadmapContentRaw = fs.readFileSync(roadmapPath, 'utf-8');
-    const roadmapContent = extractCurrentMilestone(roadmapContentRaw, cwd);
-    const roadmapPhases = new Set();
-    const phasePattern = /#{2,4}\s*Phase\s+(\d+[A-Z]?(?:\.\d+)*)\s*:/gi;
-    let m;
-    while ((m = phasePattern.exec(roadmapContent)) !== null) {
-      roadmapPhases.add(m[1]);
-    }
-
-    const diskPhases = new Set();
-    try {
-      const entries = fs.readdirSync(phasesDir, { withFileTypes: true });
-      for (const e of entries) {
-        if (e.isDirectory()) {
-          const dm = e.name.match(/^(\d+[A-Z]?(?:\.\d+)*)/i);
-          if (dm) diskPhases.add(dm[1]);
-        }
-      }
-    } catch { /* intentionally empty */ }
-
-    // Phases in ROADMAP but not on disk
-    for (const p of roadmapPhases) {
-      const padded = String(parseInt(p, 10)).padStart(2, '0');
-      if (!diskPhases.has(p) && !diskPhases.has(padded)) {
-        addIssue('warning', 'W006', `Phase ${p} in ROADMAP.md but no directory on disk`, 'Create phase directory or remove from roadmap');
-      }
-    }
-
-    // Phases on disk but not in ROADMAP
-    for (const p of diskPhases) {
-      const unpadded = String(parseInt(p, 10));
-      if (!roadmapPhases.has(p) && !roadmapPhases.has(unpadded)) {
-        addIssue('warning', 'W007', `Phase ${p} exists on disk but not in ROADMAP.md`, 'Add to roadmap or remove directory');
-      }
-    }
-  }
-
-  // ─── Perform repairs if requested ─────────────────────────────────────────
-  const repairActions = [];
-  if (options.repair && repairs.length > 0) {
-    for (const repair of repairs) {
-      try {
-        switch (repair) {
-          case 'createConfig':
-          case 'resetConfig': {
-            const defaults = {
-              model_profile: 'balanced',
-              commit_docs: true,
-              search_gitignored: false,
-              branching_strategy: 'none',
-              phase_branch_template: 'mindforge/phase-{phase}-{slug}',
-              milestone_branch_template: 'mindforge/{milestone}-{slug}',
-              quick_branch_template: null,
-              workflow: {
-                research: true,
-                plan_check: true,
-                verifier: true,
-                nyquist_validation: true,
-              },
-              parallelization: true,
-              brave_search: false,
-            };
-            fs.writeFileSync(configPath, JSON.stringify(defaults, null, 2), 'utf-8');
-            repairActions.push({ action: repair, success: true, path: 'config.json' });
-            break;
-          }
-          case 'regenerateState': {
-            // Create timestamped backup before overwriting
-            if (fs.existsSync(statePath)) {
-              const timestamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 19);
-              const backupPath = `${statePath}.bak-${timestamp}`;
-              fs.copyFileSync(statePath, backupPath);
-              repairActions.push({ action: 'backupState', success: true, path: backupPath });
-            }
-            // Generate minimal STATE.md from ROADMAP.md structure
-            const milestone = getMilestoneInfo(cwd);
-            let stateContent = '# Session State\n\n';
-            stateContent += '## Project Reference\n\n';
-            stateContent += 'See: .planning/PROJECT.md\n\n';
-            stateContent += '## Position\n\n';
-            stateContent += `**Milestone:** ${milestone.version} ${milestone.name}\n`;
-            stateContent += '**Current phase:** (determining...)\n';
-            stateContent += '**Status:** Resuming\n\n';
-            stateContent += '## Session Log\n\n';
-            stateContent += `- ${new Date().toISOString().split('T')[0]}: STATE.md regenerated by /mindforge-health --repair\n`;
-            writeStateMd(statePath, stateContent, cwd);
-            repairActions.push({ action: repair, success: true, path: 'STATE.md' });
-            break;
-          }
-          case 'addNyquistKey': {
-            if (fs.existsSync(configPath)) {
-              try {
-                const configRaw = fs.readFileSync(configPath, 'utf-8');
-                const configParsed = JSON.parse(configRaw);
-                if (!configParsed.workflow) configParsed.workflow = {};
-                if (configParsed.workflow.nyquist_validation === undefined) {
-                  configParsed.workflow.nyquist_validation = true;
-                  fs.writeFileSync(configPath, JSON.stringify(configParsed, null, 2), 'utf-8');
-                }
-                repairActions.push({ action: repair, success: true, path: 'config.json' });
-              } catch (err) {
-                repairActions.push({ action: repair, success: false, error: err.message });
-              }
-            }
-            break;
-          }
-        }
-      } catch (err) {
-        repairActions.push({ action: repair, success: false, error: err.message });
-      }
-    }
-  }
-
-  // ─── Determine overall status ─────────────────────────────────────────────
-  let status;
-  if (errors.length > 0) {
-    status = 'broken';
-  } else if (warnings.length > 0) {
-    status = 'degraded';
-  } else {
-    status = 'healthy';
-  }
-
-  const repairableCount = errors.filter(e => e.repairable).length +
-                         warnings.filter(w => w.repairable).length;
-
-  output({
-    status,
-    errors,
-    warnings,
-    info,
-    repairable_count: repairableCount,
-    repairs_performed: repairActions.length > 0 ? repairActions : undefined,
-  }, raw);
-}
-
-module.exports = {
-  cmdVerifySummary,
-  cmdVerifyPlanStructure,
-  cmdVerifyPhaseCompleteness,
-  cmdVerifyReferences,
-  cmdVerifyCommits,
-  cmdVerifyArtifacts,
-  cmdVerifyKeyLinks,
-  cmdValidateConsistency,
-  cmdValidateHealth,
-};