mindforge-cc 11.5.1 → 11.6.0

package/.agent/skills/arxiv/SKILL.md

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+---
+name: arxiv
+description: "Search arXiv papers by keyword, author, category, or ID."
+version: 1.0.0
+---
+
+# arXiv Research
+
+Search and retrieve academic papers from arXiv via their free REST API. No API key, no dependencies — just curl.
+
+## Quick Reference
+
+| Action | Command |
+|--------|---------|
+| Search papers | `curl "https://export.arxiv.org/api/query?search_query=all:QUERY&max_results=5"` |
+| Get specific paper | `curl "https://export.arxiv.org/api/query?id_list=2402.03300"` |
+| Read abstract (web) | `web_extract(urls=["https://arxiv.org/abs/2402.03300"])` |
+| Read full paper (PDF) | `web_extract(urls=["https://arxiv.org/pdf/2402.03300"])` |
+
+## Searching Papers
+
+The API returns Atom XML. Parse with `grep`/`sed` or pipe through `python3` for clean output.
+
+### Basic search
+
+```bash
+curl -s "https://export.arxiv.org/api/query?search_query=all:GRPO+reinforcement+learning&max_results=5"
+```
+
+### Clean output (parse XML to readable format)
+
+```bash
+curl -s "https://export.arxiv.org/api/query?search_query=all:GRPO+reinforcement+learning&max_results=5&sortBy=submittedDate&sortOrder=descending" | python3 -c "
+import sys, xml.etree.ElementTree as ET
+ns = {'a': 'http://www.w3.org/2005/Atom'}
+root = ET.parse(sys.stdin).getroot()
+for i, entry in enumerate(root.findall('a:entry', ns)):
+    title = entry.find('a:title', ns).text.strip().replace('\n', ' ')
+    arxiv_id = entry.find('a:id', ns).text.strip().split('/abs/')[-1]
+    published = entry.find('a:published', ns).text[:10]
+    authors = ', '.join(a.find('a:name', ns).text for a in entry.findall('a:author', ns))
+    summary = entry.find('a:summary', ns).text.strip()[:200]
+    cats = ', '.join(c.get('term') for c in entry.findall('a:category', ns))
+    print(f'{i+1}. [{arxiv_id}] {title}')
+    print(f'   Authors: {authors}')
+    print(f'   Published: {published} | Categories: {cats}')
+    print(f'   Abstract: {summary}...')
+    print(f'   PDF: https://arxiv.org/pdf/{arxiv_id}')
+    print()
+"
+```
+
+## Search Query Syntax
+
+| Prefix | Searches | Example |
+|--------|----------|---------|
+| `all:` | All fields | `all:transformer+attention` |
+| `ti:` | Title | `ti:large+language+models` |
+| `au:` | Author | `au:vaswani` |
+| `abs:` | Abstract | `abs:reinforcement+learning` |
+| `cat:` | Category | `cat:cs.AI` |
+| `co:` | Comment | `co:accepted+NeurIPS` |
+
+### Boolean operators
+
+```
+# AND (default when using +)
+search_query=all:transformer+attention
+
+# OR
+search_query=all:GPT+OR+all:BERT
+
+# AND NOT
+search_query=all:language+model+ANDNOT+all:vision
+
+# Exact phrase
+search_query=ti:"chain+of+thought"
+
+# Combined
+search_query=au:hinton+AND+cat:cs.LG
+```
+
+## Sort and Pagination
+
+| Parameter | Options |
+|-----------|---------|
+| `sortBy` | `relevance`, `lastUpdatedDate`, `submittedDate` |
+| `sortOrder` | `ascending`, `descending` |
+| `start` | Result offset (0-based) |
+| `max_results` | Number of results (default 10, max 30000) |
+
+```bash
+# Latest 10 papers in cs.AI
+curl -s "https://export.arxiv.org/api/query?search_query=cat:cs.AI&sortBy=submittedDate&sortOrder=descending&max_results=10"
+```
+
+## Fetching Specific Papers
+
+```bash
+# By arXiv ID
+curl -s "https://export.arxiv.org/api/query?id_list=2402.03300"
+
+# Multiple papers
+curl -s "https://export.arxiv.org/api/query?id_list=2402.03300,2401.12345,2403.00001"
+```
+
+## BibTeX Generation
+
+After fetching metadata for a paper, generate a BibTeX entry:
+
+{% raw %}
+```bash
+curl -s "https://export.arxiv.org/api/query?id_list=1706.03762" | python3 -c "
+import sys, xml.etree.ElementTree as ET
+ns = {'a': 'http://www.w3.org/2005/Atom', 'arxiv': 'http://arxiv.org/schemas/atom'}
+root = ET.parse(sys.stdin).getroot()
+entry = root.find('a:entry', ns)
+if entry is None: sys.exit('Paper not found')
+title = entry.find('a:title', ns).text.strip().replace('\n', ' ')
+authors = ' and '.join(a.find('a:name', ns).text for a in entry.findall('a:author', ns))
+year = entry.find('a:published', ns).text[:4]
+raw_id = entry.find('a:id', ns).text.strip().split('/abs/')[-1]
+cat = entry.find('arxiv:primary_category', ns)
+primary = cat.get('term') if cat is not None else 'cs.LG'
+last_name = entry.find('a:author', ns).find('a:name', ns).text.split()[-1]
+print(f'@article{{{last_name}{year}_{raw_id.replace(\".\", \"\")},')
+print(f'  title     = {{{title}}},')
+print(f'  author    = {{{authors}}},')
+print(f'  year      = {{{year}}},')
+print(f'  eprint    = {{{raw_id}}},')
+print(f'  archivePrefix = {{arXiv}},')
+print(f'  primaryClass  = {{{primary}}},')
+print(f'  url       = {{https://arxiv.org/abs/{raw_id}}}')
+print('}')
+"
+```
+{% endraw %}
+
+## Reading Paper Content
+
+After finding a paper, read it:
+
+```
+# Abstract page (fast, metadata + abstract)
+web_extract(urls=["https://arxiv.org/abs/2402.03300"])
+
+# Full paper (PDF → markdown via Firecrawl)
+web_extract(urls=["https://arxiv.org/pdf/2402.03300"])
+```
+
+For local PDF processing, see the `ocr-and-documents` skill.
+
+## Common Categories
+
+| Category | Field |
+|----------|-------|
+| `cs.AI` | Artificial Intelligence |
+| `cs.CL` | Computation and Language (NLP) |
+| `cs.CV` | Computer Vision |
+| `cs.LG` | Machine Learning |
+| `cs.CR` | Cryptography and Security |
+| `stat.ML` | Machine Learning (Statistics) |
+| `math.OC` | Optimization and Control |
+| `physics.comp-ph` | Computational Physics |
+
+Full list: https://arxiv.org/category_taxonomy
+
+## Helper Script
+
+The `scripts/search_arxiv.py` script handles XML parsing and provides clean output:
+
+```bash
+python scripts/search_arxiv.py "GRPO reinforcement learning"
+python scripts/search_arxiv.py "transformer attention" --max 10 --sort date
+python scripts/search_arxiv.py --author "Yann LeCun" --max 5
+python scripts/search_arxiv.py --category cs.AI --sort date
+python scripts/search_arxiv.py --id 2402.03300
+python scripts/search_arxiv.py --id 2402.03300,2401.12345
+```
+
+No dependencies — uses only Python stdlib.
+
+---
+
+## Semantic Scholar (Citations, Related Papers, Author Profiles)
+
+arXiv doesn't provide citation data or recommendations. Use the **Semantic Scholar API** for that — free, no key needed for basic use (1 req/sec), returns JSON.
+
+### Get paper details + citations
+
+```bash
+# By arXiv ID
+curl -s "https://api.semanticscholar.org/graph/v1/paper/arXiv:2402.03300?fields=title,authors,citationCount,referenceCount,influentialCitationCount,year,abstract" | python3 -m json.tool
+
+# By Semantic Scholar paper ID or DOI
+curl -s "https://api.semanticscholar.org/graph/v1/paper/DOI:10.1234/example?fields=title,citationCount"
+```
+
+### Get citations OF a paper (who cited it)
+
+```bash
+curl -s "https://api.semanticscholar.org/graph/v1/paper/arXiv:2402.03300/citations?fields=title,authors,year,citationCount&limit=10" | python3 -m json.tool
+```
+
+### Get references FROM a paper (what it cites)
+
+```bash
+curl -s "https://api.semanticscholar.org/graph/v1/paper/arXiv:2402.03300/references?fields=title,authors,year,citationCount&limit=10" | python3 -m json.tool
+```
+
+### Search papers (alternative to arXiv search, returns JSON)
+
+```bash
+curl -s "https://api.semanticscholar.org/graph/v1/paper/search?query=GRPO+reinforcement+learning&limit=5&fields=title,authors,year,citationCount,externalIds" | python3 -m json.tool
+```
+
+### Get paper recommendations
+
+```bash
+curl -s -X POST "https://api.semanticscholar.org/recommendations/v1/papers/" \
+  -H "Content-Type: application/json" \
+  -d '{"positivePaperIds": ["arXiv:2402.03300"], "negativePaperIds": []}' | python3 -m json.tool
+```
+
+### Author profile
+
+```bash
+curl -s "https://api.semanticscholar.org/graph/v1/author/search?query=Yann+LeCun&fields=name,hIndex,citationCount,paperCount" | python3 -m json.tool
+```
+
+### Useful Semantic Scholar fields
+
+`title`, `authors`, `year`, `abstract`, `citationCount`, `referenceCount`, `influentialCitationCount`, `isOpenAccess`, `openAccessPdf`, `fieldsOfStudy`, `publicationVenue`, `externalIds` (contains arXiv ID, DOI, etc.)
+
+---
+
+## Complete Research Workflow
+
+1. **Discover**: `python scripts/search_arxiv.py "your topic" --sort date --max 10`
+2. **Assess impact**: `curl -s "https://api.semanticscholar.org/graph/v1/paper/arXiv:ID?fields=citationCount,influentialCitationCount"`
+3. **Read abstract**: `web_extract(urls=["https://arxiv.org/abs/ID"])`
+4. **Read full paper**: `web_extract(urls=["https://arxiv.org/pdf/ID"])`
+5. **Find related work**: `curl -s "https://api.semanticscholar.org/graph/v1/paper/arXiv:ID/references?fields=title,citationCount&limit=20"`
+6. **Get recommendations**: POST to Semantic Scholar recommendations endpoint
+7. **Track authors**: `curl -s "https://api.semanticscholar.org/graph/v1/author/search?query=NAME"`
+
+## Rate Limits
+
+| API | Rate | Auth |
+|-----|------|------|
+| arXiv | ~1 req / 3 seconds | None needed |
+| Semantic Scholar | 1 req / second | None (100/sec with API key) |
+
+## Notes
+
+- arXiv returns Atom XML — use the helper script or parsing snippet for clean output
+- Semantic Scholar returns JSON — pipe through `python3 -m json.tool` for readability
+- arXiv IDs: old format (`hep-th/0601001`) vs new (`2402.03300`)
+- PDF: `https://arxiv.org/pdf/{id}` — Abstract: `https://arxiv.org/abs/{id}`
+- HTML (when available): `https://arxiv.org/html/{id}`
+- For local PDF processing, see the `ocr-and-documents` skill
+
+## ID Versioning
+
+- `arxiv.org/abs/1706.03762` always resolves to the **latest** version
+- `arxiv.org/abs/1706.03762v1` points to a **specific** immutable version
+- When generating citations, preserve the version suffix you actually read to prevent citation drift (a later version may substantially change content)
+- The API `<id>` field returns the versioned URL (e.g., `http://arxiv.org/abs/1706.03762v7`)
+
+## Withdrawn Papers
+
+Papers can be withdrawn after submission. When this happens:
+- The `<summary>` field contains a withdrawal notice (look for "withdrawn" or "retracted")
+- Metadata fields may be incomplete
+- Always check the summary before treating a result as a valid paper

package/.agent/skills/blogwatcher/SKILL.md

@@ -0,0 +1,130 @@
+---
+name: blogwatcher
+description: "Monitor blogs and RSS/Atom feeds via blogwatcher-cli tool."
+version: 2.0.0
+prerequisites:
+  commands: [blogwatcher-cli]
+---
+
+# Blogwatcher
+
+Track blog and RSS/Atom feed updates with the `blogwatcher-cli` tool. Supports automatic feed discovery, HTML scraping fallback, OPML import, and read/unread article management.
+
+## Installation
+
+Pick one method:
+
+- **Go:** `go install github.com/JulienTant/blogwatcher-cli/cmd/blogwatcher-cli@latest`
+- **Docker:** `docker run --rm -v blogwatcher-cli:/data ghcr.io/julientant/blogwatcher-cli`
+- **Binary (Linux amd64):** `curl -sL https://github.com/JulienTant/blogwatcher-cli/releases/latest/download/blogwatcher-cli_linux_amd64.tar.gz | tar xz -C /usr/local/bin blogwatcher-cli`
+- **Binary (Linux arm64):** `curl -sL https://github.com/JulienTant/blogwatcher-cli/releases/latest/download/blogwatcher-cli_linux_arm64.tar.gz | tar xz -C /usr/local/bin blogwatcher-cli`
+- **Binary (macOS Apple Silicon):** `curl -sL https://github.com/JulienTant/blogwatcher-cli/releases/latest/download/blogwatcher-cli_darwin_arm64.tar.gz | tar xz -C /usr/local/bin blogwatcher-cli`
+- **Binary (macOS Intel):** `curl -sL https://github.com/JulienTant/blogwatcher-cli/releases/latest/download/blogwatcher-cli_darwin_amd64.tar.gz | tar xz -C /usr/local/bin blogwatcher-cli`
+
+All releases: https://github.com/JulienTant/blogwatcher-cli/releases
+
+### Docker with persistent storage
+
+By default the database lives at `~/.blogwatcher-cli/blogwatcher-cli.db`. In Docker this is lost on container restart. Use `BLOGWATCHER_DB` or a volume mount to persist it:
+
+```bash
+# Named volume (simplest)
+docker run --rm -v blogwatcher-cli:/data -e BLOGWATCHER_DB=/data/blogwatcher-cli.db ghcr.io/julientant/blogwatcher-cli scan
+
+# Host bind mount
+docker run --rm -v /path/on/host:/data -e BLOGWATCHER_DB=/data/blogwatcher-cli.db ghcr.io/julientant/blogwatcher-cli scan
+```
+
+### Migrating from the original blogwatcher
+
+If upgrading from `Hyaxia/blogwatcher`, move your database:
+
+```bash
+mv ~/.blogwatcher/blogwatcher.db ~/.blogwatcher-cli/blogwatcher-cli.db
+```
+
+The binary name changed from `blogwatcher` to `blogwatcher-cli`.
+
+## Common Commands
+
+### Managing blogs
+
+- Add a blog: `blogwatcher-cli add "My Blog" https://example.com`
+- Add with explicit feed: `blogwatcher-cli add "My Blog" https://example.com --feed-url https://example.com/feed.xml`
+- Add with HTML scraping: `blogwatcher-cli add "My Blog" https://example.com --scrape-selector "article h2 a"`
+- List tracked blogs: `blogwatcher-cli blogs`
+- Remove a blog: `blogwatcher-cli remove "My Blog" --yes`
+- Import from OPML: `blogwatcher-cli import subscriptions.opml`
+
+### Scanning and reading
+
+- Scan all blogs: `blogwatcher-cli scan`
+- Scan one blog: `blogwatcher-cli scan "My Blog"`
+- List unread articles: `blogwatcher-cli articles`
+- List all articles: `blogwatcher-cli articles --all`
+- Filter by blog: `blogwatcher-cli articles --blog "My Blog"`
+- Filter by category: `blogwatcher-cli articles --category "Engineering"`
+- Mark article read: `blogwatcher-cli read 1`
+- Mark article unread: `blogwatcher-cli unread 1`
+- Mark all read: `blogwatcher-cli read-all`
+- Mark all read for a blog: `blogwatcher-cli read-all --blog "My Blog" --yes`
+
+## Environment Variables
+
+All flags can be set via environment variables with the `BLOGWATCHER_` prefix:
+
+| Variable | Description |
+|---|---|
+| `BLOGWATCHER_DB` | Path to SQLite database file |
+| `BLOGWATCHER_WORKERS` | Number of concurrent scan workers (default: 8) |
+| `BLOGWATCHER_SILENT` | Only output "scan done" when scanning |
+| `BLOGWATCHER_YES` | Skip confirmation prompts |
+| `BLOGWATCHER_CATEGORY` | Default filter for articles by category |
+
+## Example Output
+
+```
+$ blogwatcher-cli blogs
+Tracked blogs (1):
+
+  xkcd
+    URL: https://xkcd.com
+    Feed: https://xkcd.com/atom.xml
+    Last scanned: 2026-04-03 10:30
+```
+
+```
+$ blogwatcher-cli scan
+Scanning 1 blog(s)...
+
+  xkcd
+    Source: RSS | Found: 4 | New: 4
+
+Found 4 new article(s) total!
+```
+
+```
+$ blogwatcher-cli articles
+Unread articles (2):
+
+  [1] [new] Barrel - Part 13
+       Blog: xkcd
+       URL: https://xkcd.com/3095/
+       Published: 2026-04-02
+       Categories: Comics, Science
+
+  [2] [new] Volcano Fact
+       Blog: xkcd
+       URL: https://xkcd.com/3094/
+       Published: 2026-04-01
+       Categories: Comics
+```
+
+## Notes
+
+- Auto-discovers RSS/Atom feeds from blog homepages when no `--feed-url` is provided.
+- Falls back to HTML scraping if RSS fails and `--scrape-selector` is configured.
+- Categories from RSS/Atom feeds are stored and can be used to filter articles.
+- Import blogs in bulk from OPML files exported by Feedly, Inoreader, NewsBlur, etc.
+- Database stored at `~/.blogwatcher-cli/blogwatcher-cli.db` by default (override with `--db` or `BLOGWATCHER_DB`).
+- Use `blogwatcher-cli <command> --help` to discover all flags and options.