milens 0.2.0

package/dist/store/db.js

@@ -0,0 +1,260 @@
+import BetterSqlite3 from 'better-sqlite3';
+import { readFileSync } from 'node:fs';
+import { join, dirname } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { createHash } from 'node:crypto';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+export class Database {
+    db;
+    stmts;
+    constructor(dbPath) {
+        this.db = new BetterSqlite3(dbPath);
+        this.db.pragma('journal_mode = WAL');
+        this.db.pragma('synchronous = NORMAL');
+        this.db.pragma('foreign_keys = ON');
+        this.db.pragma('cache_size = -8000'); // 8MB page cache
+        this.applySchema();
+        this.stmts = this.prepareStatements();
+    }
+    prepareStatements() {
+        return {
+            checkHash: this.db.prepare('SELECT hash FROM file_hashes WHERE path = ?'),
+            upsertHash: this.db.prepare(`INSERT INTO file_hashes (path, hash) VALUES (?, ?)
+         ON CONFLICT(path) DO UPDATE SET hash = excluded.hash, analyzed_at = datetime('now')`),
+            insertSym: this.db.prepare(`INSERT OR REPLACE INTO symbols (id, name, kind, file_path, start_line, end_line, exported, parent_id, signature)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`),
+            insertLink: this.db.prepare(`INSERT OR REPLACE INTO links (id, from_id, to_id, type, confidence, line_number)
+         VALUES (?, ?, ?, ?, ?, ?)`),
+            searchFts: this.db.prepare(`SELECT s.* FROM symbol_fts f
+         JOIN symbols s ON s.rowid = f.rowid
+         WHERE symbol_fts MATCH ?
+         ORDER BY rank LIMIT ?`),
+            byName: this.db.prepare('SELECT * FROM symbols WHERE name = ?'),
+            byId: this.db.prepare('SELECT * FROM symbols WHERE id = ?'),
+            byFile: this.db.prepare('SELECT * FROM symbols WHERE file_path = ?'),
+            linksIn: this.db.prepare('SELECT * FROM links WHERE to_id = ?'),
+            linksOut: this.db.prepare('SELECT * FROM links WHERE from_id = ?'),
+            upstream: this.db.prepare(`
+        WITH RECURSIVE upstream(id, depth, via) AS (
+          SELECT from_id, 1, type FROM links WHERE to_id = ? AND type IN ('calls', 'imports', 'extends', 'implements')
+          UNION
+          SELECT l.from_id, u.depth + 1, l.type
+          FROM links l JOIN upstream u ON l.to_id = u.id
+          WHERE u.depth < ? AND l.type IN ('calls', 'imports', 'extends', 'implements')
+        )
+        SELECT DISTINCT s.*, u.depth, u.via FROM upstream u JOIN symbols s ON s.id = u.id ORDER BY u.depth
+      `),
+            downstream: this.db.prepare(`
+        WITH RECURSIVE downstream(id, depth, via) AS (
+          SELECT to_id, 1, type FROM links WHERE from_id = ? AND type IN ('calls', 'imports', 'extends', 'implements')
+          UNION
+          SELECT l.to_id, d.depth + 1, l.type
+          FROM links l JOIN downstream d ON l.from_id = d.id
+          WHERE d.depth < ? AND l.type IN ('calls', 'imports', 'extends', 'implements')
+        )
+        SELECT DISTINCT s.*, d.depth, d.via FROM downstream d JOIN symbols s ON s.id = d.id ORDER BY d.depth
+      `),
+            countSymbols: this.db.prepare('SELECT COUNT(*) as c FROM symbols'),
+            countLinks: this.db.prepare('SELECT COUNT(*) as c FROM links'),
+            countFiles: this.db.prepare('SELECT COUNT(*) as c FROM file_hashes'),
+            deleteFileLinks: this.db.prepare('DELETE FROM links WHERE from_id IN (SELECT id FROM symbols WHERE file_path = ?)'),
+            deleteFileSymbols: this.db.prepare('DELETE FROM symbols WHERE file_path = ?'),
+        };
+    }
+    applySchema() {
+        let sql;
+        try {
+            sql = readFileSync(join(__dirname, 'schema.sql'), 'utf-8');
+        }
+        catch {
+            sql = readFileSync(join(__dirname, '..', '..', 'src', 'store', 'schema.sql'), 'utf-8');
+        }
+        this.db.exec(sql);
+    }
+    // ── File hash tracking ──
+    isFileUpToDate(filePath, content) {
+        const hash = createHash('sha256').update(content).digest('hex').slice(0, 16);
+        const row = this.stmts.checkHash.get(filePath);
+        return row?.hash === hash;
+    }
+    upsertFileHash(filePath, content) {
+        const hash = createHash('sha256').update(content).digest('hex').slice(0, 16);
+        this.stmts.upsertHash.run(filePath, hash);
+    }
+    // ── Symbol CRUD ──
+    insertSymbol(sym) {
+        this.stmts.insertSym.run(sym.id, sym.name, sym.kind, sym.filePath, sym.startLine, sym.endLine, sym.exported ? 1 : 0, sym.parentId ?? null, sym.signature ?? null);
+    }
+    insertLink(link) {
+        this.stmts.insertLink.run(link.id, link.fromId, link.toId, link.type, link.confidence, link.line ?? null);
+    }
+    // ── Queries ──
+    searchSymbols(query, limit = 20) {
+        const rows = this.stmts.searchFts.all(query, limit);
+        return rows.map(rowToSymbol);
+    }
+    findSymbolByName(name) {
+        const rows = this.stmts.byName.all(name);
+        return rows.map(rowToSymbol);
+    }
+    findSymbolById(id) {
+        const row = this.stmts.byId.get(id);
+        return row ? rowToSymbol(row) : null;
+    }
+    getSymbolsByFile(filePath) {
+        const rows = this.stmts.byFile.all(filePath);
+        return rows.map(rowToSymbol);
+    }
+    getIncomingLinks(symbolId) {
+        const rows = this.stmts.linksIn.all(symbolId);
+        return rows.map(rowToLink);
+    }
+    getOutgoingLinks(symbolId) {
+        const rows = this.stmts.linksOut.all(symbolId);
+        return rows.map(rowToLink);
+    }
+    findUpstream(symbolId, maxDepth = 3) {
+        const rows = this.stmts.upstream.all(symbolId, maxDepth);
+        return rows.map(r => ({ symbol: rowToSymbol(r), depth: r.depth, via: r.via }));
+    }
+    findDownstream(symbolId, maxDepth = 3) {
+        const rows = this.stmts.downstream.all(symbolId, maxDepth);
+        return rows.map(r => ({ symbol: rowToSymbol(r), depth: r.depth, via: r.via }));
+    }
+    getStats() {
+        const symbols = this.stmts.countSymbols.get().c;
+        const links = this.stmts.countLinks.get().c;
+        const files = this.stmts.countFiles.get().c;
+        return { symbols, links, files };
+    }
+    getAllSymbols() {
+        const rows = this.db.prepare('SELECT * FROM symbols').all();
+        return rows.map(rowToSymbol);
+    }
+    getAllLinks() {
+        const rows = this.db.prepare('SELECT * FROM links').all();
+        return rows.map(rowToLink);
+    }
+    findDeadCode(kind, limit = 50) {
+        const sql = kind
+            ? `SELECT s.* FROM symbols s
+         LEFT JOIN links l ON l.to_id = s.id AND l.type != 'contains'
+         WHERE s.exported = 1 AND s.kind = ? AND l.id IS NULL
+         LIMIT ?`
+            : `SELECT s.* FROM symbols s
+         LEFT JOIN links l ON l.to_id = s.id AND l.type != 'contains'
+         WHERE s.exported = 1 AND l.id IS NULL
+         LIMIT ?`;
+        const rows = kind
+            ? this.db.prepare(sql).all(kind, limit)
+            : this.db.prepare(sql).all(limit);
+        return rows.map(rowToSymbol);
+    }
+    getTypeHierarchy(symbolId) {
+        const ancestors = this.db.prepare(`
+      WITH RECURSIVE up(id, depth) AS (
+        SELECT to_id, 1 FROM links WHERE from_id = ? AND type IN ('extends', 'implements')
+        UNION
+        SELECT l.to_id, u.depth + 1
+        FROM links l JOIN up u ON l.from_id = u.id
+        WHERE l.type IN ('extends', 'implements') AND u.depth < 10
+      )
+      SELECT DISTINCT s.*, u.depth FROM up u JOIN symbols s ON s.id = u.id ORDER BY u.depth
+    `).all(symbolId);
+        const descendants = this.db.prepare(`
+      WITH RECURSIVE down(id, depth) AS (
+        SELECT from_id, 1 FROM links WHERE to_id = ? AND type IN ('extends', 'implements')
+        UNION
+        SELECT l.from_id, d.depth + 1
+        FROM links l JOIN down d ON l.to_id = d.id
+        WHERE l.type IN ('extends', 'implements') AND d.depth < 10
+      )
+      SELECT DISTINCT s.*, d.depth FROM down d JOIN symbols s ON s.id = d.id ORDER BY d.depth
+    `).all(symbolId);
+        return {
+            ancestors: ancestors.map(r => ({ symbol: rowToSymbol(r), depth: r.depth })),
+            descendants: descendants.map(r => ({ symbol: rowToSymbol(r), depth: r.depth })),
+        };
+    }
+    findPath(fromName, toName, maxDepth = 5) {
+        const fromSyms = this.findSymbolByName(fromName);
+        const toSyms = this.findSymbolByName(toName);
+        if (fromSyms.length === 0 || toSyms.length === 0)
+            return null;
+        const fromId = fromSyms[0].id;
+        const toIds = new Set(toSyms.map(s => s.id));
+        // BFS outgoing from source
+        const rows = this.db.prepare(`
+      WITH RECURSIVE path(id, depth, via) AS (
+        SELECT to_id, 1, type FROM links WHERE from_id = ? AND type != 'contains'
+        UNION
+        SELECT l.to_id, p.depth + 1, l.type
+        FROM links l JOIN path p ON l.from_id = p.id
+        WHERE l.type != 'contains' AND p.depth < ?
+      )
+      SELECT DISTINCT s.*, p.depth, p.via FROM path p JOIN symbols s ON s.id = p.id ORDER BY p.depth
+    `).all(fromId, maxDepth);
+        const result = [];
+        for (const r of rows) {
+            result.push({ symbol: rowToSymbol(r), depth: r.depth, via: r.via });
+            if (toIds.has(r.id))
+                break;
+        }
+        const found = result.find(r => toIds.has(r.symbol.id));
+        if (!found)
+            return null;
+        return result.filter(r => r.depth <= found.depth);
+    }
+    getChangedFiles() {
+        const rows = this.db.prepare('SELECT DISTINCT file_path FROM symbols').all();
+        return rows.map((r) => r.file_path);
+    }
+    // ── Maintenance ──
+    deleteFileData(filePath) {
+        this.stmts.deleteFileLinks.run(filePath);
+        this.stmts.deleteFileSymbols.run(filePath);
+    }
+    rebuildSearch() {
+        this.db.exec(`INSERT INTO symbol_fts(symbol_fts) VALUES('rebuild')`);
+    }
+    clearSymbolsAndLinks() {
+        this.db.exec('DELETE FROM symbols');
+        this.db.exec('DELETE FROM links');
+    }
+    clear() {
+        this.db.exec('DELETE FROM symbols');
+        this.db.exec('DELETE FROM links');
+        this.db.exec('DELETE FROM file_hashes');
+    }
+    transaction(fn) {
+        return this.db.transaction(fn)();
+    }
+    close() {
+        this.db.close();
+    }
+}
+// ── Row mappers ──
+function rowToSymbol(row) {
+    return {
+        id: row.id,
+        name: row.name,
+        kind: row.kind,
+        filePath: row.file_path,
+        startLine: row.start_line,
+        endLine: row.end_line,
+        exported: row.exported === 1,
+        parentId: row.parent_id ?? undefined,
+        signature: row.signature ?? undefined,
+    };
+}
+function rowToLink(row) {
+    return {
+        id: row.id,
+        fromId: row.from_id,
+        toId: row.to_id,
+        type: row.type,
+        confidence: row.confidence,
+        line: row.line_number ?? undefined,
+    };
+}
+//# sourceMappingURL=db.js.map

package/dist/store/db.js.map

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package/dist/store/registry.d.ts

@@ -0,0 +1,13 @@
+import type { RepoEntry } from '../types.js';
+export declare class RepoRegistry {
+    private entries;
+    constructor();
+    private load;
+    private save;
+    register(rootPath: string, dbPath: string, hash: string): void;
+    findByRoot(rootPath: string): RepoEntry | undefined;
+    findDbPath(rootPath: string): string | null;
+    listAll(): RepoEntry[];
+    remove(rootPath: string): boolean;
+}
+//# sourceMappingURL=registry.d.ts.map

package/dist/store/registry.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../src/store/registry.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAK7C,qBAAa,YAAY;IACvB,OAAO,CAAC,OAAO,CAAmB;;IAMlC,OAAO,CAAC,IAAI;IAWZ,OAAO,CAAC,IAAI;IAKZ,QAAQ,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI;IAiB9D,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,GAAG,SAAS;IAKnD,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI;IAO3C,OAAO,IAAI,SAAS,EAAE;IAItB,MAAM,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO;CAUlC"}

package/dist/store/registry.js

@@ -0,0 +1,69 @@
+import { join, resolve } from 'node:path';
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
+import { homedir } from 'node:os';
+const MILENS_HOME = join(homedir(), '.milens');
+const REGISTRY_FILE = join(MILENS_HOME, 'registry.json');
+export class RepoRegistry {
+    entries = [];
+    constructor() {
+        this.load();
+    }
+    load() {
+        try {
+            if (existsSync(REGISTRY_FILE)) {
+                const data = JSON.parse(readFileSync(REGISTRY_FILE, 'utf-8'));
+                this.entries = Array.isArray(data) ? data : [];
+            }
+        }
+        catch {
+            this.entries = [];
+        }
+    }
+    save() {
+        mkdirSync(MILENS_HOME, { recursive: true });
+        writeFileSync(REGISTRY_FILE, JSON.stringify(this.entries, null, 2));
+    }
+    register(rootPath, dbPath, hash) {
+        const absolute = resolve(rootPath);
+        const idx = this.entries.findIndex(e => e.rootPath === absolute);
+        const entry = {
+            rootPath: absolute,
+            dbPath: resolve(dbPath),
+            analyzedAt: new Date().toISOString(),
+            hash,
+        };
+        if (idx >= 0) {
+            this.entries[idx] = entry;
+        }
+        else {
+            this.entries.push(entry);
+        }
+        this.save();
+    }
+    findByRoot(rootPath) {
+        const absolute = resolve(rootPath);
+        return this.entries.find(e => e.rootPath === absolute);
+    }
+    findDbPath(rootPath) {
+        const entry = this.findByRoot(rootPath);
+        if (!entry)
+            return null;
+        if (!existsSync(entry.dbPath))
+            return null;
+        return entry.dbPath;
+    }
+    listAll() {
+        return [...this.entries];
+    }
+    remove(rootPath) {
+        const absolute = resolve(rootPath);
+        const before = this.entries.length;
+        this.entries = this.entries.filter(e => e.rootPath !== absolute);
+        if (this.entries.length < before) {
+            this.save();
+            return true;
+        }
+        return false;
+    }
+}
+//# sourceMappingURL=registry.js.map

package/dist/store/registry.js.map

@@ -0,0 +1 @@
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package/dist/store/schema.sql

@@ -0,0 +1,60 @@
+-- milens code intelligence database schema
+
+CREATE TABLE IF NOT EXISTS symbols (
+  id    TEXT PRIMARY KEY,
+  name  TEXT NOT NULL,
+  kind  TEXT NOT NULL,
+  file_path   TEXT NOT NULL,
+  start_line  INTEGER,
+  end_line    INTEGER,
+  exported    INTEGER DEFAULT 0,
+  parent_id   TEXT,
+  signature   TEXT
+);
+
+CREATE TABLE IF NOT EXISTS links (
+  id          TEXT PRIMARY KEY,
+  from_id     TEXT NOT NULL,
+  to_id       TEXT NOT NULL,
+  type        TEXT NOT NULL,
+  confidence  REAL DEFAULT 1.0,
+  line_number INTEGER
+);
+
+CREATE TABLE IF NOT EXISTS file_hashes (
+  path        TEXT PRIMARY KEY,
+  hash        TEXT NOT NULL,
+  analyzed_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+CREATE TABLE IF NOT EXISTS meta (
+  key   TEXT PRIMARY KEY,
+  value TEXT
+);
+
+CREATE INDEX IF NOT EXISTS idx_symbols_name ON symbols(name);
+CREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_path);
+CREATE INDEX IF NOT EXISTS idx_symbols_kind ON symbols(kind);
+CREATE INDEX IF NOT EXISTS idx_links_from   ON links(from_id);
+CREATE INDEX IF NOT EXISTS idx_links_to     ON links(to_id);
+CREATE INDEX IF NOT EXISTS idx_links_type   ON links(type);
+
+-- FTS5 full-text search on symbol names and paths
+CREATE VIRTUAL TABLE IF NOT EXISTS symbol_fts USING fts5(
+  name,
+  file_path,
+  kind,
+  content='symbols',
+  content_rowid='rowid'
+);
+
+-- Triggers to keep FTS in sync
+CREATE TRIGGER IF NOT EXISTS symbols_ai AFTER INSERT ON symbols BEGIN
+  INSERT INTO symbol_fts(rowid, name, file_path, kind)
+  VALUES (new.rowid, new.name, new.file_path, new.kind);
+END;
+
+CREATE TRIGGER IF NOT EXISTS symbols_ad AFTER DELETE ON symbols BEGIN
+  INSERT INTO symbol_fts(symbol_fts, rowid, name, file_path, kind)
+  VALUES ('delete', old.rowid, old.name, old.file_path, old.kind);
+END;

package/dist/types.d.ts

@@ -0,0 +1,67 @@
+export type SymbolKind = 'function' | 'class' | 'method' | 'interface' | 'variable' | 'type' | 'enum' | 'struct' | 'trait' | 'module';
+export interface CodeSymbol {
+    id: string;
+    name: string;
+    kind: SymbolKind;
+    filePath: string;
+    startLine: number;
+    endLine: number;
+    exported: boolean;
+    parentId?: string;
+    signature?: string;
+}
+export type LinkType = 'imports' | 'calls' | 'extends' | 'implements' | 'contains';
+export interface SymbolLink {
+    id: string;
+    fromId: string;
+    toId: string;
+    type: LinkType;
+    confidence: number;
+    line?: number;
+}
+export interface RawImport {
+    filePath: string;
+    modulePath: string;
+    names: Array<{
+        name: string;
+        alias?: string;
+    }>;
+    isDefault: boolean;
+    isWildcard: boolean;
+    line: number;
+}
+export interface RawCall {
+    filePath: string;
+    enclosingSymbolId: string;
+    calleeName: string;
+    receiver?: string;
+    line: number;
+}
+export interface RawHeritage {
+    filePath: string;
+    childName: string;
+    parentName: string;
+    type: 'extends' | 'implements';
+    line: number;
+}
+export interface ExtractionResult {
+    symbols: CodeSymbol[];
+    imports: RawImport[];
+    calls: RawCall[];
+    heritage: RawHeritage[];
+    exportedNames: Set<string>;
+}
+export interface AnalysisStats {
+    filesScanned: number;
+    filesParsed: number;
+    symbolCount: number;
+    linkCount: number;
+    durationMs: number;
+}
+export interface RepoEntry {
+    rootPath: string;
+    dbPath: string;
+    analyzedAt: string;
+    hash: string;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/types.d.ts.map

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package/dist/types.js

@@ -0,0 +1,3 @@
+// ── Core domain types for milens code intelligence ──
+export {};
+//# sourceMappingURL=types.js.map

package/dist/types.js.map

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package/package.json

@@ -0,0 +1,60 @@
+{
+  "name": "milens",
+  "version": "0.2.0",
+  "description": "Lightweight Code Intelligence Platform — analyze codebases and build knowledge graphs",
+  "type": "module",
+  "bin": {
+    "milens": "./dist/cli.js"
+  },
+  "files": [
+    "dist/",
+    "README.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "build": "tsc && node -e \"require('fs').copyFileSync('src/store/schema.sql','dist/store/schema.sql')\"",
+    "dev": "tsx src/cli.ts",
+    "test": "vitest run",
+    "test:watch": "vitest",
+    "lint": "tsc --noEmit",
+    "prepublishOnly": "npm run build && npm test",
+    "self-analyze": "tsx src/cli.ts analyze -p . --force --verbose",
+    "self-serve": "tsx src/cli.ts serve -p . --http --port 3100"
+  },
+  "keywords": [
+    "code-intelligence",
+    "knowledge-graph",
+    "mcp",
+    "tree-sitter",
+    "static-analysis",
+    "codebase-indexer",
+    "ai-agent"
+  ],
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/fuze210699/milens.git"
+  },
+  "homepage": "https://github.com/fuze210699/milens#readme",
+  "bugs": {
+    "url": "https://github.com/fuze210699/milens/issues"
+  },
+  "engines": {
+    "node": ">=20.0.0"
+  },
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.29.0",
+    "better-sqlite3": "^11.0.0",
+    "commander": "^12.0.0",
+    "ignore": "^7.0.0",
+    "tree-sitter-wasms": "^0.1.12",
+    "web-tree-sitter": "^0.24.7"
+  },
+  "license": "MIT",
+  "devDependencies": {
+    "@types/better-sqlite3": "^7.0.0",
+    "@types/node": "^20.0.0",
+    "tsx": "^4.0.0",
+    "typescript": "^5.4.0",
+    "vitest": "^4.0.0"
+  }
+}