milens 0.2.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2026 milens contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+<p align="center">
+  <strong>milens</strong><br>
+  <em>Lightweight Code Intelligence Engine</em>
+</p>
+
+<p align="center">
+  <a href="#features">Features</a> •
+  <a href="#quick-start">Quick Start</a> •
+  <a href="#cli-commands">CLI</a> •
+  <a href="#mcp-server">MCP Server</a> •
+  <a href="#architecture">Architecture</a> •
+  <a href="#adding-a-language">Extend</a>
+</p>
+
+---
+
+Parse codebases into **knowledge graphs** — symbols, imports, calls, inheritance — and serve them to **AI agents** via the [Model Context Protocol (MCP)](https://modelcontextprotocol.io/).
+
+## Features
+
+- **8 languages** — TypeScript, JavaScript, Python, Java, Go, Rust, PHP, Vue
+- **Declarative grammars** — add a new language by writing a config object, not extraction code
+- **SQLite + FTS5** — full-text symbol search + recursive CTE graph traversal
+- **Token-compact MCP** — 4 tools with minimal output, saving 40-60% tokens for AI agents
+- **Incremental indexing** — file-hash based, only re-parses changed files
+- **Multi-repo registry** — manage multiple codebases from `~/.milens/`
+- **Dual transport** — MCP over stdio (VS Code / Cursor) or HTTP (remote agents)
+
+## Quick Start
+
+```bash
+# Install dependencies
+npm install
+
+# Index the current project
+npx tsx src/cli.ts analyze -p . --verbose
+
+# Search for symbols
+npx tsx src/cli.ts search "UserService"
+
+# Start MCP server for AI agents
+npx tsx src/cli.ts serve --http --port 3100
+```
+
+## CLI Commands
+
+### `analyze` — Index a codebase
+
+```bash
+milens analyze -p /path/to/repo --verbose --force
+```
+
+Scans source files, parses symbols using tree-sitter, resolves imports/calls/inheritance, and stores everything in a local SQLite database at `.milens/milens.db`.
+
+| Flag | Description |
+|---|---|
+| `-p, --path` | Repository root (default: `.`) |
+| `-o, --output` | Custom output directory for the database |
+| `-v, --verbose` | Show detailed progress |
+| `-f, --force` | Force full re-index (skip hash check) |
+
+### `search` — Find symbols
+
+```bash
+milens search "createUser" --limit 10
+```
+
+Full-text search across all indexed symbol names using FTS5.
+
+### `inspect` — 360° symbol context
+
+```bash
+milens inspect "AuthService"
+```
+
+Shows a symbol's incoming references (who calls/uses it) and outgoing dependencies (what it calls/imports/extends).
+
+### `impact` — Blast radius analysis
+
+```bash
+milens impact "UserModel" --direction upstream --depth 3
+```
+
+Answers: *"What breaks if this symbol changes?"* Uses recursive CTEs to traverse the dependency graph up to N levels deep.
+
+| Flag | Description |
+|---|---|
+| `-d, --direction` | `upstream` (default) or `downstream` |
+| `--depth` | Max traversal depth (default: `3`) |
+
+### `status` — Index stats
+
+```bash
+milens status -p /path/to/repo
+```
+
+Shows symbol count, link count, file count, and last indexed time.
+
+### `serve` — Start MCP server
+
+```bash
+# stdio transport (for VS Code / Cursor)
+milens serve -p /path/to/repo
+
+# HTTP transport (for remote agents)
+milens serve -p /path/to/repo --http --port 3100
+```
+
+## MCP Server
+
+milens exposes 4 tools via the Model Context Protocol:
+
+| Tool | Description | Key params |
+|---|---|---|
+| `search` | Find symbols by name/keyword (FTS5) | `query`, `limit` |
+| `inspect` | Incoming refs, outgoing deps, hierarchy | `name` |
+| `impact` | Blast radius with depth grouping | `target`, `direction`, `depth` |
+| `status` | Index stats for a repository | `repo` |
+
+### VS Code / Cursor Integration
+
+Add to your MCP settings (`mcp.json`):
+
+```json
+{
+  "servers": {
+    "milens": {
+      "command": "npx",
+      "args": ["tsx", "/path/to/milens/src/cli.ts", "serve", "-p", "/path/to/repo"]
+    }
+  }
+}
+```
+
+### HTTP Mode
+
+```bash
+milens serve --http --port 3100
+```
+
+Endpoint: `POST http://localhost:3100/mcp`
+
+## Architecture
+
+```
+src/
+  cli.ts              — CLI entry point (commander)
+  types.ts            — Shared type definitions
+  parser/
+    loader.ts         — Tree-sitter WASM loading
+    extract.ts        — Universal extractor + LangSpec interface
+    lang-*.ts         — Declarative grammar per language
+    languages.ts      — Language registry
+  analyzer/
+    scanner.ts        — File discovery (.gitignore aware)
+    resolver.ts       — Import + call + heritage resolution
+    engine.ts         — Pipeline orchestrator
+  store/
+    schema.sql        — SQLite schema with FTS5
+    db.ts             — Database adapter with recursive CTE queries
+    registry.ts       — Multi-repo registry (~/.milens/)
+  server/
+    mcp.ts            — MCP server (stdio + HTTP transports)
+```
+
+### How It Works
+
+1. **Scan** — Discover source files respecting `.gitignore`
+2. **Parse** — Extract symbols (functions, classes, interfaces, ...) via tree-sitter WASM grammars
+3. **Resolve** — Link imports → symbols, calls → definitions, inheritance chains
+4. **Store** — Write symbols + links to SQLite with FTS5 search index
+5. **Serve** — Expose the knowledge graph via MCP tools or CLI
+
+### Design Decisions
+
+- **Declarative `LangSpec`**: Each language is a config object with tree-sitter queries. One universal extractor processes all languages — no per-language extraction code.
+- **SQLite recursive CTE**: Impact analysis traverses the graph inside the database. No need to load the full graph into memory.
+- **Token-compact output**: MCP responses use minimal structured text, not verbose descriptions.
+- **Incremental by default**: File content is hashed; only changed files get re-parsed on subsequent runs.
+
+## Adding a Language
+
+Create `src/parser/lang-xxx.ts`:
+
+```typescript
+import type { LangSpec } from './extract.js';
+
+const spec: LangSpec = {
+  id: 'xxx',
+  extensions: ['.xxx'],
+  wasmName: 'tree-sitter-xxx',
+  queries: {
+    functions: `(function_definition name: (identifier) @name) @def`,
+    classes: `(class_definition name: (identifier) @name) @def`,
+    // add queries using tree-sitter playground
+  },
+  resolveImport(raw, fromFile, root, aliases) {
+    // return resolved file path or null
+  },
+};
+
+export default spec;
+```
+
+Then register it in `src/parser/languages.ts`.
+
+## Requirements
+
+- Node.js >= 20.0.0
+
+## License
+
+[MIT](LICENSE)

package/dist/analyzer/engine.d.ts

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+import type { AnalysisStats } from '../types.js';
+interface EngineOptions {
+    rootPath: string;
+    dbPath: string;
+    verbose?: boolean;
+    force?: boolean;
+    aliases?: Record<string, string>;
+}
+export declare function analyze(opts: EngineOptions): Promise<AnalysisStats>;
+export {};
+//# sourceMappingURL=engine.d.ts.map

package/dist/analyzer/engine.d.ts.map

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package/dist/analyzer/engine.js

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+import { readFileSync } from 'node:fs';
+import { resolve } from 'node:path';
+import { scanFiles } from './scanner.js';
+import { langForFile } from '../parser/languages.js';
+import { getParser, loadLanguage } from '../parser/loader.js';
+import { extractFromTree, clearQueryCache } from '../parser/extract.js';
+import { extractVueScript } from '../parser/lang-vue.js';
+import { resolveLinks } from './resolver.js';
+import { Database } from '../store/db.js';
+export async function analyze(opts) {
+    const t0 = Date.now();
+    const rootPath = resolve(opts.rootPath);
+    const db = new Database(opts.dbPath);
+    const aliases = opts.aliases ?? {};
+    if (opts.force)
+        db.clear();
+    // Phase 1: Scan files
+    const files = scanFiles(rootPath, opts.verbose);
+    if (opts.verbose)
+        console.log(`[scan] Found ${files.length} source files`);
+    // Phase 2: Group files by language for cache-friendly processing
+    const langGroups = new Map();
+    for (const file of files) {
+        const spec = langForFile(file.relativePath);
+        if (!spec)
+            continue;
+        const group = langGroups.get(spec.wasmName) ?? [];
+        group.push({ ...file, spec });
+        langGroups.set(spec.wasmName, group);
+    }
+    // Phase 3: Parse & extract — process each language group together
+    // This keeps the same parser/language/compiled queries hot in cache
+    const symbolsByFile = new Map();
+    const allSymbols = [];
+    const allImports = [];
+    const allCalls = [];
+    const allHeritage = [];
+    const resolvedImportPaths = new Map();
+    const parsedFiles = new Set();
+    let filesParsed = 0;
+    for (const [wasmName, group] of langGroups) {
+        // Pre-load parser + language once per group
+        const parser = await getParser(wasmName);
+        const lang = await loadLanguage(wasmName);
+        for (const file of group) {
+            const source = readFileSync(file.absolutePath, 'utf-8');
+            // Skip unchanged files (incremental)
+            if (!opts.force && db.isFileUpToDate(file.relativePath, source)) {
+                if (opts.verbose)
+                    console.log(`[skip] ${file.relativePath} (unchanged)`);
+                continue;
+            }
+            try {
+                const result = parseFile(source, file.relativePath, file.spec, parser, lang);
+                if (!result)
+                    continue;
+                symbolsByFile.set(file.relativePath, result.symbols);
+                allSymbols.push(...result.symbols);
+                allImports.push(...result.imports);
+                allCalls.push(...result.calls);
+                allHeritage.push(...result.heritage);
+                // Resolve import paths eagerly
+                for (const imp of result.imports) {
+                    const resolved = file.spec.resolveImport(imp.modulePath, imp.filePath, rootPath, aliases);
+                    if (resolved) {
+                        resolvedImportPaths.set(`${imp.filePath}::${imp.modulePath}`, resolved);
+                    }
+                }
+                db.upsertFileHash(file.relativePath, source);
+                parsedFiles.add(file.relativePath);
+                filesParsed++;
+                if (opts.verbose)
+                    console.log(`[parse] ${file.relativePath}: ${result.symbols.length} symbols`);
+            }
+            catch (err) {
+                if (opts.verbose)
+                    console.error(`[error] ${file.relativePath}: ${err}`);
+            }
+        }
+    }
+    // Phase 4: Load unchanged files' symbols for cross-file resolution
+    if (!opts.force) {
+        for (const [, group] of langGroups) {
+            for (const file of group) {
+                if (!parsedFiles.has(file.relativePath)) {
+                    const existing = db.getSymbolsByFile(file.relativePath);
+                    if (existing.length > 0) {
+                        symbolsByFile.set(file.relativePath, existing);
+                        allSymbols.push(...existing);
+                    }
+                }
+            }
+        }
+    }
+    // Phase 5: Resolve cross-file links
+    const links = resolveLinks({
+        symbolsByFile,
+        allSymbols,
+        imports: allImports,
+        calls: allCalls,
+        heritage: allHeritage,
+        resolvedImportPaths,
+    });
+    if (opts.verbose)
+        console.log(`[link] Resolved ${links.length} relationships`);
+    // Phase 6: Persist to database in single transaction
+    db.transaction(() => {
+        if (opts.force) {
+            db.clearSymbolsAndLinks();
+        }
+        else {
+            for (const fp of parsedFiles)
+                db.deleteFileData(fp);
+        }
+        for (const sym of allSymbols) {
+            if (opts.force || parsedFiles.has(sym.filePath))
+                db.insertSymbol(sym);
+        }
+        for (const link of links)
+            db.insertLink(link);
+        db.rebuildSearch();
+    });
+    const stats = {
+        filesScanned: files.length,
+        filesParsed,
+        symbolCount: allSymbols.length,
+        linkCount: links.length,
+        durationMs: Date.now() - t0,
+    };
+    if (opts.verbose) {
+        console.log(`[done] ${stats.symbolCount} symbols, ${stats.linkCount} links in ${stats.durationMs}ms`);
+    }
+    clearQueryCache();
+    db.close();
+    return stats;
+}
+function parseFile(source, filePath, spec, parser, lang) {
+    let code = source;
+    let lineOffset = 0;
+    // Vue SFC: extract <script> block
+    if (spec.id === 'vue') {
+        const script = extractVueScript(source);
+        if (!script)
+            return null;
+        code = script.content;
+        lineOffset = script.lineOffset;
+    }
+    const tree = parser.parse(code);
+    const result = extractFromTree(tree, lang, spec, filePath);
+    // Adjust line numbers for Vue offset
+    if (lineOffset > 0) {
+        for (const sym of result.symbols) {
+            sym.startLine += lineOffset;
+            sym.endLine += lineOffset;
+        }
+        for (const imp of result.imports)
+            imp.line += lineOffset;
+        for (const call of result.calls)
+            call.line += lineOffset;
+    }
+    return result;
+}
+//# sourceMappingURL=engine.js.map

package/dist/analyzer/engine.js.map

@@ -0,0 +1 @@
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package/dist/analyzer/resolver.d.ts

@@ -0,0 +1,12 @@
+import type { CodeSymbol, SymbolLink, RawImport, RawCall, RawHeritage } from '../types.js';
+interface ResolutionInput {
+    symbolsByFile: Map<string, CodeSymbol[]>;
+    allSymbols: CodeSymbol[];
+    imports: RawImport[];
+    calls: RawCall[];
+    heritage: RawHeritage[];
+    resolvedImportPaths: Map<string, string>;
+}
+export declare function resolveLinks(input: ResolutionInput): SymbolLink[];
+export {};
+//# sourceMappingURL=resolver.d.ts.map

package/dist/analyzer/resolver.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"resolver.d.ts","sourceRoot":"","sources":["../../src/analyzer/resolver.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,WAAW,EAAY,MAAM,aAAa,CAAC;AAErG,UAAU,eAAe;IACvB,aAAa,EAAE,GAAG,CAAC,MAAM,EAAE,UAAU,EAAE,CAAC,CAAC;IACzC,UAAU,EAAE,UAAU,EAAE,CAAC;IACzB,OAAO,EAAE,SAAS,EAAE,CAAC;IACrB,KAAK,EAAE,OAAO,EAAE,CAAC;IACjB,QAAQ,EAAE,WAAW,EAAE,CAAC;IACxB,mBAAmB,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC1C;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,eAAe,GAAG,UAAU,EAAE,CA+FjE"}

package/dist/analyzer/resolver.js

@@ -0,0 +1,119 @@
+export function resolveLinks(input) {
+    const links = [];
+    const symbolByName = buildNameIndex(input.allSymbols);
+    // Build imported names per file: file → (name → targetFile)
+    const importedNamesPerFile = new Map();
+    for (const imp of input.imports) {
+        const targetFile = input.resolvedImportPaths.get(`${imp.filePath}::${imp.modulePath}`);
+        if (!targetFile)
+            continue;
+        let fileImports = importedNamesPerFile.get(imp.filePath);
+        if (!fileImports) {
+            fileImports = new Map();
+            importedNamesPerFile.set(imp.filePath, fileImports);
+        }
+        for (const { name } of imp.names) {
+            fileImports.set(name, targetFile);
+        }
+    }
+    // ── Resolve imports ──
+    for (const imp of input.imports) {
+        const targetFile = input.resolvedImportPaths.get(`${imp.filePath}::${imp.modulePath}`);
+        if (!targetFile)
+            continue;
+        const targetSymbols = input.symbolsByFile.get(targetFile);
+        if (!targetSymbols)
+            continue;
+        // Find the importing symbol (file-level or specific)
+        const fromId = `${imp.filePath}#module:_top:0`;
+        if (imp.names.length > 0) {
+            for (const { name } of imp.names) {
+                const target = targetSymbols.find(s => s.name === name && s.exported);
+                if (target) {
+                    links.push(makeLink(fromId, target.id, 'imports', 0.95, imp.line));
+                }
+            }
+        }
+        else {
+            // Wildcard or default import — link to file module
+            const target = targetSymbols.find(s => s.exported);
+            if (target) {
+                links.push(makeLink(fromId, target.id, 'imports', 0.7, imp.line));
+            }
+        }
+    }
+    // ── Resolve calls (import-aware) ──
+    for (const call of input.calls) {
+        const candidates = symbolByName.get(call.calleeName);
+        if (!candidates || candidates.length === 0)
+            continue;
+        // Priority: same file > imported symbol > unique global > ambiguous
+        const sameFile = candidates.filter(s => s.filePath === call.filePath);
+        if (sameFile.length > 0) {
+            links.push(makeLink(call.enclosingSymbolId, sameFile[0].id, 'calls', 0.9, call.line));
+            continue;
+        }
+        // Check if callee was imported into this file
+        const fileImports = importedNamesPerFile.get(call.filePath);
+        const importedFromFile = fileImports?.get(call.calleeName);
+        if (importedFromFile) {
+            const imported = candidates.find(s => s.filePath === importedFromFile);
+            if (imported) {
+                links.push(makeLink(call.enclosingSymbolId, imported.id, 'calls', 0.95, call.line));
+                continue;
+            }
+        }
+        const match = candidates[0];
+        const confidence = candidates.length === 1 ? 0.8 : 0.5;
+        links.push(makeLink(call.enclosingSymbolId, match.id, 'calls', confidence, call.line));
+    }
+    // ── Resolve heritage (extends/implements) ──
+    for (const h of input.heritage) {
+        const children = symbolByName.get(h.childName);
+        const parents = symbolByName.get(h.parentName);
+        if (!children || !parents)
+            continue;
+        const child = children.find(s => s.filePath === h.filePath) ?? children[0];
+        const parent = parents[0];
+        if (child && parent) {
+            links.push(makeLink(child.id, parent.id, h.type, 0.95, h.line));
+        }
+    }
+    // ── Containment links (method → class) ──
+    for (const sym of input.allSymbols) {
+        if (sym.parentId) {
+            links.push(makeLink(sym.parentId, sym.id, 'contains', 1.0));
+        }
+    }
+    return deduplicateLinks(links);
+}
+// ── Helpers ──
+function buildNameIndex(symbols) {
+    const index = new Map();
+    for (const s of symbols) {
+        const arr = index.get(s.name) ?? [];
+        arr.push(s);
+        index.set(s.name, arr);
+    }
+    return index;
+}
+function makeLink(fromId, toId, type, confidence, line) {
+    return {
+        id: `${fromId}->${type}->${toId}`,
+        fromId,
+        toId,
+        type,
+        confidence,
+        line,
+    };
+}
+function deduplicateLinks(links) {
+    const seen = new Set();
+    return links.filter(l => {
+        if (seen.has(l.id))
+            return false;
+        seen.add(l.id);
+        return true;
+    });
+}
+//# sourceMappingURL=resolver.js.map

package/dist/analyzer/resolver.js.map

@@ -0,0 +1 @@
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package/dist/analyzer/scanner.d.ts

@@ -0,0 +1,6 @@
+export interface ScannedFile {
+    relativePath: string;
+    absolutePath: string;
+}
+export declare function scanFiles(rootPath: string, verbose?: boolean): ScannedFile[];
+//# sourceMappingURL=scanner.d.ts.map

package/dist/analyzer/scanner.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"scanner.d.ts","sourceRoot":"","sources":["../../src/analyzer/scanner.ts"],"names":[],"mappings":"AAKA,MAAM,WAAW,WAAW;IAC1B,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,wBAAgB,SAAS,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,UAAQ,GAAG,WAAW,EAAE,CA0C1E"}

package/dist/analyzer/scanner.js

@@ -0,0 +1,73 @@
+import { join, relative } from 'node:path';
+import { readFileSync, statSync, readdirSync } from 'node:fs';
+import ignore from 'ignore';
+import { supportedExtensions } from '../parser/languages.js';
+export function scanFiles(rootPath, verbose = false) {
+    const exts = new Set(supportedExtensions());
+    const ig = loadIgnoreRules(rootPath);
+    const results = [];
+    function walk(dir) {
+        let entries;
+        try {
+            entries = readdirSync(dir);
+        }
+        catch {
+            return;
+        }
+        for (const entry of entries) {
+            const abs = join(dir, entry);
+            const rel = relative(rootPath, abs).replace(/\\/g, '/');
+            // Skip hidden dirs and common non-source dirs
+            if (entry.startsWith('.'))
+                continue;
+            if (SKIP_DIRS.has(entry) && dir === rootPath)
+                continue;
+            if (ig.ignores(rel))
+                continue;
+            let stat;
+            try {
+                stat = statSync(abs);
+            }
+            catch {
+                continue;
+            }
+            if (stat.isDirectory()) {
+                if (SKIP_DIRS.has(entry))
+                    continue;
+                walk(abs);
+            }
+            else if (stat.isFile()) {
+                const ext = '.' + entry.split('.').pop()?.toLowerCase();
+                if (exts.has(ext)) {
+                    results.push({ relativePath: rel, absolutePath: abs });
+                }
+                else if (verbose) {
+                    // Skip non-supported files silently
+                }
+            }
+        }
+    }
+    walk(rootPath);
+    return results;
+}
+function loadIgnoreRules(rootPath) {
+    const ig = ignore();
+    // Always ignore these
+    ig.add(['node_modules', 'dist', 'build', '.git', '__pycache__', 'vendor', 'target']);
+    // Read .gitignore if present
+    try {
+        const content = readFileSync(join(rootPath, '.gitignore'), 'utf-8');
+        ig.add(content);
+    }
+    catch { /* no .gitignore */ }
+    return ig;
+}
+const SKIP_DIRS = new Set([
+    'node_modules', '.git', 'dist', 'build', 'out',
+    '.next', '.nuxt', '.svelte-kit',
+    '__pycache__', '.venv', 'venv', 'env',
+    'vendor', 'target',
+    '.idea', '.vscode',
+    'coverage', '.nyc_output',
+]);
+//# sourceMappingURL=scanner.js.map

package/dist/analyzer/scanner.js.map

@@ -0,0 +1 @@
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package/dist/cli.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":""}