mcp-sequential-research 1.0.0

package/dist/compilers.js.map

@@ -0,0 +1 @@
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package/dist/format.d.ts

@@ -0,0 +1,84 @@
+/**
+ * Formatting utilities for sequential research output
+ */
+import type { Citation, ReportSection } from "./schema.js";
+/**
+ * Generate a unique ID with optional prefix
+ */
+export declare function generateId(prefix?: string): string;
+/**
+ * Get current ISO timestamp
+ */
+export declare function isoNow(): string;
+/**
+ * Format a citation for inline display
+ */
+export declare function formatCitationInline(citation: Citation): string;
+/**
+ * Format a citation for the sources section
+ */
+export declare function formatCitationFull(citation: Citation): string;
+/**
+ * Format a report section as markdown
+ */
+export declare function formatSection(section: ReportSection): string;
+/**
+ * Format multiple sections as markdown document
+ */
+export declare function formatSections(sections: ReportSection[]): string;
+/**
+ * Format sources list as markdown
+ */
+export declare function formatSourcesList(sources: Citation[], style?: "inline" | "footnote" | "endnote"): string;
+/**
+ * Count words in text (simple whitespace split)
+ */
+export declare function countWords(text: string): number;
+/**
+ * Create a markdown table from data
+ */
+export declare function formatTable(headers: string[], rows: string[][]): string;
+/**
+ * Wrap text in a markdown callout/admonition
+ */
+export declare function formatCallout(content: string, type?: "note" | "warning" | "info" | "tip"): string;
+/**
+ * Escape special markdown characters in text
+ */
+export declare function escapeMarkdown(text: string): string;
+/**
+ * Truncate text to a maximum length with ellipsis
+ */
+export declare function truncate(text: string, maxLength: number): string;
+/**
+ * Format a list as markdown bullet points
+ */
+export declare function formatBulletList(items: string[]): string;
+/**
+ * Format a numbered list
+ */
+export declare function formatNumberedList(items: string[]): string;
+/**
+ * Create a blockquote
+ */
+export declare function formatBlockquote(text: string): string;
+/**
+ * Format code block with optional language
+ */
+export declare function formatCodeBlock(code: string, language?: string): string;
+/**
+ * Deduplicate citations by ID
+ */
+export declare function deduplicateCitations(citations: Citation[]): Citation[];
+/**
+ * Renumber citations sequentially
+ */
+export declare function renumberCitations(citations: Citation[]): {
+    citations: Citation[];
+    mapping: Map<string, string>;
+};
+/**
+ * Apply citation renumbering to text
+ */
+export declare function applyCitationMapping(text: string, mapping: Map<string, string>): string;
+//# sourceMappingURL=format.d.ts.map

package/dist/format.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"format.d.ts","sourceRoot":"","sources":["../src/format.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE3D;;GAEG;AACH,wBAAgB,UAAU,CAAC,MAAM,GAAE,MAAa,GAAG,MAAM,CAIxD;AAED;;GAEG;AACH,wBAAgB,MAAM,IAAI,MAAM,CAE/B;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CAE/D;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CAmB7D;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,CAG5D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,QAAQ,EAAE,aAAa,EAAE,GAAG,MAAM,CAEhE;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAC/B,OAAO,EAAE,QAAQ,EAAE,EACnB,KAAK,GAAE,QAAQ,GAAG,UAAU,GAAG,SAAoB,GAClD,MAAM,CAmBR;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAE/C;AAED;;GAEG;AACH,wBAAgB,WAAW,CACzB,OAAO,EAAE,MAAM,EAAE,EACjB,IAAI,EAAE,MAAM,EAAE,EAAE,GACf,MAAM,CAMR;AAED;;GAEG;AACH,wBAAgB,aAAa,CAC3B,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,KAAc,GACjD,MAAM,CASR;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;GAEG;AACH,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAGhE;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAExD;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAE1D;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAKrD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,GAAE,MAAW,GAAG,MAAM,CAE3E;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,QAAQ,EAAE,GAAG,QAAQ,EAAE,CAOtE;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAC/B,SAAS,EAAE,QAAQ,EAAE,GACpB;IAAE,SAAS,EAAE,QAAQ,EAAE,CAAC;IAAC,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;CAAE,CAQzD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC3B,MAAM,CAMR"}

package/dist/format.js

@@ -0,0 +1,177 @@
+/**
+ * Formatting utilities for sequential research output
+ */
+/**
+ * Generate a unique ID with optional prefix
+ */
+export function generateId(prefix = "id") {
+    const timestamp = Date.now().toString(36);
+    const random = Math.random().toString(36).substring(2, 8);
+    return `${prefix}-${timestamp}-${random}`;
+}
+/**
+ * Get current ISO timestamp
+ */
+export function isoNow() {
+    return new Date().toISOString();
+}
+/**
+ * Format a citation for inline display
+ */
+export function formatCitationInline(citation) {
+    return `[${citation.id}]`;
+}
+/**
+ * Format a citation for the sources section
+ */
+export function formatCitationFull(citation) {
+    const parts = [];
+    parts.push(`**${citation.id}**:`);
+    parts.push(citation.title);
+    if (citation.url) {
+        parts.push(`<${citation.url}>`);
+    }
+    if (citation.source_type !== "web") {
+        parts.push(`(${citation.source_type})`);
+    }
+    if (citation.accessed_date) {
+        parts.push(`[Accessed: ${citation.accessed_date}]`);
+    }
+    return parts.join(" ");
+}
+/**
+ * Format a report section as markdown
+ */
+export function formatSection(section) {
+    const heading = "#".repeat(section.level) + " " + section.heading;
+    return `${heading}\n\n${section.content}`;
+}
+/**
+ * Format multiple sections as markdown document
+ */
+export function formatSections(sections) {
+    return sections.map(formatSection).join("\n\n");
+}
+/**
+ * Format sources list as markdown
+ */
+export function formatSourcesList(sources, style = "inline") {
+    if (sources.length === 0) {
+        return "*No sources cited.*";
+    }
+    const lines = [];
+    if (style === "endnote") {
+        lines.push("## Sources\n");
+    }
+    else {
+        lines.push("---\n");
+        lines.push("### References\n");
+    }
+    for (const source of sources) {
+        lines.push(`- ${formatCitationFull(source)}`);
+    }
+    return lines.join("\n");
+}
+/**
+ * Count words in text (simple whitespace split)
+ */
+export function countWords(text) {
+    return text.split(/\s+/).filter(Boolean).length;
+}
+/**
+ * Create a markdown table from data
+ */
+export function formatTable(headers, rows) {
+    const headerRow = `| ${headers.join(" | ")} |`;
+    const separator = `| ${headers.map(() => "---").join(" | ")} |`;
+    const dataRows = rows.map((row) => `| ${row.join(" | ")} |`);
+    return [headerRow, separator, ...dataRows].join("\n");
+}
+/**
+ * Wrap text in a markdown callout/admonition
+ */
+export function formatCallout(content, type = "note") {
+    const icons = {
+        note: "📝",
+        warning: "⚠️",
+        info: "ℹ️",
+        tip: "💡",
+    };
+    return `> ${icons[type]} **${type.charAt(0).toUpperCase() + type.slice(1)}**\n> \n> ${content.split("\n").join("\n> ")}`;
+}
+/**
+ * Escape special markdown characters in text
+ */
+export function escapeMarkdown(text) {
+    return text.replace(/([*_`\[\]()#>+\-.!])/g, "\\$1");
+}
+/**
+ * Truncate text to a maximum length with ellipsis
+ */
+export function truncate(text, maxLength) {
+    if (text.length <= maxLength)
+        return text;
+    return text.substring(0, maxLength - 3) + "...";
+}
+/**
+ * Format a list as markdown bullet points
+ */
+export function formatBulletList(items) {
+    return items.map((item) => `- ${item}`).join("\n");
+}
+/**
+ * Format a numbered list
+ */
+export function formatNumberedList(items) {
+    return items.map((item, i) => `${i + 1}. ${item}`).join("\n");
+}
+/**
+ * Create a blockquote
+ */
+export function formatBlockquote(text) {
+    return text
+        .split("\n")
+        .map((line) => `> ${line}`)
+        .join("\n");
+}
+/**
+ * Format code block with optional language
+ */
+export function formatCodeBlock(code, language = "") {
+    return `\`\`\`${language}\n${code}\n\`\`\``;
+}
+/**
+ * Deduplicate citations by ID
+ */
+export function deduplicateCitations(citations) {
+    const seen = new Set();
+    return citations.filter((citation) => {
+        if (seen.has(citation.id))
+            return false;
+        seen.add(citation.id);
+        return true;
+    });
+}
+/**
+ * Renumber citations sequentially
+ */
+export function renumberCitations(citations) {
+    const mapping = new Map();
+    const renumbered = citations.map((citation, index) => {
+        const newId = `[${index + 1}]`;
+        mapping.set(citation.id, newId);
+        return { ...citation, id: newId };
+    });
+    return { citations: renumbered, mapping };
+}
+/**
+ * Apply citation renumbering to text
+ */
+export function applyCitationMapping(text, mapping) {
+    let result = text;
+    for (const [oldId, newId] of mapping) {
+        result = result.replaceAll(oldId, newId);
+    }
+    return result;
+}
+//# sourceMappingURL=format.js.map

package/dist/format.js.map

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package/dist/index.d.ts

@@ -0,0 +1,10 @@
+#!/usr/bin/env node
+/**
+ * MCP Sequential Research Server
+ *
+ * Exposes two tools via stdio transport:
+ * - sequential_research_plan: Generate structured research queries
+ * - sequential_research_compile: Compile results into a report
+ */
+export {};
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA;;;;;;GAMG"}

package/dist/index.js

@@ -0,0 +1,251 @@
+#!/usr/bin/env node
+/**
+ * MCP Sequential Research Server
+ *
+ * Exposes two tools via stdio transport:
+ * - sequential_research_plan: Generate structured research queries
+ * - sequential_research_compile: Compile results into a report
+ */
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
+import { PlanInputSchema, CompileInputSchema } from "./schema.js";
+import { generatePlan } from "./planners.js";
+import { compileReport } from "./compilers.js";
+// Create MCP server
+const server = new Server({
+    name: "mcp-sequential-research",
+    version: "1.0.0",
+}, {
+    capabilities: {
+        tools: {},
+    },
+});
+// Tool definitions with JSON Schema for MCP
+const TOOLS = [
+    {
+        name: "sequential_research_plan",
+        description: `Generate a structured research plan with queries, extraction goals, and expected result schemas.
+
+Use this tool when:
+- Your prompt involves multiple concepts requiring systematic investigation
+- You need a reproducible search strategy
+- You want query coverage analysis and deduplication guidance
+
+The plan includes:
+- Ordered research queries with priorities and dependencies
+- Extraction goals for each query
+- Expected result schema for validation
+- Execution order (parallel groups)
+
+After receiving the plan, execute queries using appropriate MCP tools (search_patents, Google Custom Search, etc.),
+then pass results to sequential_research_compile.`,
+        inputSchema: {
+            type: "object",
+            properties: {
+                topic: {
+                    type: "string",
+                    description: "The research topic or question to investigate",
+                },
+                depth: {
+                    type: "string",
+                    enum: ["shallow", "standard", "deep"],
+                    default: "standard",
+                    description: "Research depth: shallow (3-5 queries), standard (5-10 queries), deep (10-20 queries)",
+                },
+                focus_areas: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "Specific aspects to focus on (e.g., ['technical details', 'market analysis'])",
+                },
+                constraints: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "Research constraints or exclusions (e.g., ['no paywalled sources', 'english only'])",
+                },
+                output_format: {
+                    type: "string",
+                    enum: ["markdown", "json", "structured"],
+                    default: "markdown",
+                    description: "Desired format for the final compiled output",
+                },
+            },
+            required: ["topic"],
+        },
+    },
+    {
+        name: "sequential_research_compile",
+        description: `Compile research results into a structured markdown report with citations and sources.
+
+Use this tool when:
+- You have executed searches via Google Patents MCP, Google Search MCP, or other sources
+- You want a report with proper citations and risk analysis
+- You need machine-parseable citation references for downstream processing
+
+Input requirements:
+- The original plan from sequential_research_plan
+- Raw results array matching the expected schema (query_id, success, data, sources)
+
+Output includes:
+- Executive summary
+- Organized sections by query type
+- Inline citations [S1], [S2], etc.
+- Consolidated sources table
+- Statistics on query coverage
+
+Citation format: Inline references like [S1] with a sources table at the end for claim-miner compatibility.`,
+        inputSchema: {
+            type: "object",
+            properties: {
+                plan: {
+                    type: "object",
+                    description: "The research plan from sequential_research_plan",
+                },
+                raw_results: {
+                    type: "array",
+                    items: {
+                        type: "object",
+                        properties: {
+                            query_id: { type: "string", description: "Query ID this result corresponds to" },
+                            success: { type: "boolean", description: "Whether the query execution succeeded" },
+                            data: { type: "object", description: "Extracted data matching the result schema" },
+                            sources: {
+                                type: "array",
+                                items: {
+                                    type: "object",
+                                    properties: {
+                                        id: { type: "string", description: "Citation ID (e.g., S1, S2)" },
+                                        source_type: { type: "string", enum: ["web", "document", "api", "database", "manual"] },
+                                        title: { type: "string" },
+                                        url: { type: "string" },
+                                        accessed_date: { type: "string" },
+                                        excerpt: { type: "string" },
+                                    },
+                                    required: ["id", "source_type", "title"],
+                                },
+                                description: "Sources consulted for this query",
+                            },
+                            error: { type: "string", description: "Error message if success is false" },
+                        },
+                        required: ["query_id", "success"],
+                    },
+                    description: "Raw results from executing the plan queries",
+                },
+                include_sources: {
+                    type: "boolean",
+                    default: true,
+                    description: "Include sources section in output",
+                },
+                include_methodology: {
+                    type: "boolean",
+                    default: false,
+                    description: "Include methodology section in output",
+                },
+                citation_style: {
+                    type: "string",
+                    enum: ["inline", "footnote", "endnote"],
+                    default: "inline",
+                    description: "How to format citations in the output",
+                },
+            },
+            required: ["plan", "raw_results"],
+        },
+    },
+];
+// Handle list tools request
+server.setRequestHandler(ListToolsRequestSchema, async () => {
+    return {
+        tools: TOOLS,
+    };
+});
+// Handle tool calls
+server.setRequestHandler(CallToolRequestSchema, async (request) => {
+    const { name, arguments: args } = request.params;
+    try {
+        switch (name) {
+            case "sequential_research_plan": {
+                // Validate input
+                const parsed = PlanInputSchema.safeParse(args);
+                if (!parsed.success) {
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: `Validation error: ${parsed.error.message}`,
+                            },
+                        ],
+                        isError: true,
+                    };
+                }
+                // Generate plan
+                const plan = generatePlan(parsed.data);
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: JSON.stringify(plan, null, 2),
+                        },
+                    ],
+                };
+            }
+            case "sequential_research_compile": {
+                // Validate input
+                const parsed = CompileInputSchema.safeParse(args);
+                if (!parsed.success) {
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: `Validation error: ${parsed.error.message}`,
+                            },
+                        ],
+                        isError: true,
+                    };
+                }
+                // Compile report
+                const report = compileReport(parsed.data);
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: JSON.stringify(report, null, 2),
+                        },
+                    ],
+                };
+            }
+            default:
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: `Unknown tool: ${name}`,
+                        },
+                    ],
+                    isError: true,
+                };
+        }
+    }
+    catch (error) {
+        const errorMessage = error instanceof Error ? error.message : String(error);
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: `Error executing ${name}: ${errorMessage}`,
+                },
+            ],
+            isError: true,
+        };
+    }
+});
+// Run server
+async function main() {
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+    console.error("MCP Sequential Research server running on stdio");
+}
+main().catch((error) => {
+    console.error("Fatal error:", error);
+    process.exit(1);
+});
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/planners.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Research Plan Generation
+ *
+ * Deterministic planner that generates structured research queries
+ * and extraction goals without calling external services.
+ */
+import type { PlanInput, PlanOutput } from "./schema.js";
+/**
+ * Main plan generation function
+ */
+export declare function generatePlan(input: PlanInput): PlanOutput;
+//# sourceMappingURL=planners.d.ts.map

package/dist/planners.d.ts.map

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