mcp-codebase-intelligence 0.1.0

package/dist/tools/goto-definition.js

@@ -0,0 +1,77 @@
+import { readFileSync } from "fs";
+export const gotoDefinitionTool = {
+    name: "goto_definition",
+    description: "Go to the definition of a symbol at a specific position in a file. Uses LSP for precise type-aware resolution — resolves through imports, type aliases, and inheritance.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            file_path: {
+                type: "string",
+                description: "Absolute path to the file",
+            },
+            line: {
+                type: "number",
+                description: "Line number (1-based)",
+            },
+            character: {
+                type: "number",
+                description: "Column number (0-based)",
+            },
+        },
+        required: ["file_path", "line", "character"],
+    },
+};
+export async function handleGotoDefinition(lspManager, args) {
+    const client = lspManager.getClientForFile(args.file_path);
+    if (!client) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: `No LSP server available for ${args.file_path}. LSP features require a running language server.`,
+                },
+            ],
+        };
+    }
+    const locations = await client.getDefinition(args.file_path, args.line, args.character);
+    if (locations.length === 0) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: `No definition found at ${args.file_path}:${args.line}:${args.character}`,
+                },
+            ],
+        };
+    }
+    const results = locations.map((loc) => {
+        const filePath = loc.uri.replace("file://", "");
+        let context = "";
+        try {
+            const lines = readFileSync(filePath, "utf-8").split("\n");
+            const startLine = Math.max(0, loc.line - 2);
+            const endLine = Math.min(lines.length, loc.line + 3);
+            context = lines
+                .slice(startLine, endLine)
+                .map((l, i) => {
+                const lineNum = startLine + i + 1;
+                const marker = lineNum === loc.line ? " >>>" : "    ";
+                return `${marker} ${lineNum}: ${l}`;
+            })
+                .join("\n");
+        }
+        catch {
+            // ignore read errors
+        }
+        return `${filePath}:${loc.line}:${loc.character}\n${context}`;
+    });
+    return {
+        content: [
+            {
+                type: "text",
+                text: `Definition(s) found:\n\n${results.join("\n\n")}`,
+            },
+        ],
+    };
+}
+//# sourceMappingURL=goto-definition.js.map

package/dist/tools/goto-definition.js.map

@@ -0,0 +1 @@
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package/dist/tools/natural-language-query.d.ts

@@ -0,0 +1,23 @@
+import { CodeGraph } from "../graph/code-graph.js";
+export declare const naturalLanguageQueryTool: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: "object";
+        properties: {
+            query: {
+                type: string;
+                description: string;
+            };
+        };
+        required: string[];
+    };
+};
+export declare function handleNaturalLanguageQuery(graph: CodeGraph, args: {
+    query: string;
+}): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};

package/dist/tools/natural-language-query.js

@@ -0,0 +1,426 @@
+export const naturalLanguageQueryTool = {
+    name: "query_codebase",
+    description: "Answer natural language questions about the codebase structure. Examples: 'Find all API endpoints', 'Show the auth flow', 'What modules depend on the database layer?', 'List all exported classes', 'What does the orders module do?'. Translates questions into graph queries.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            query: {
+                type: "string",
+                description: "Natural language question about the codebase",
+            },
+        },
+        required: ["query"],
+    },
+};
+export function handleNaturalLanguageQuery(graph, args) {
+    const query = args.query.toLowerCase().trim();
+    const intent = classifyIntent(query);
+    const db = graph.getDb();
+    let text;
+    switch (intent.type) {
+        case "find_endpoints":
+            text = findEndpoints(db);
+            break;
+        case "find_classes":
+            text = findByKind(db, "class", intent.target);
+            break;
+        case "find_functions":
+            text = findByKind(db, "function", intent.target);
+            break;
+        case "find_interfaces":
+            text = findByKind(db, "interface", intent.target);
+            break;
+        case "find_exports":
+            text = findExports(db, intent.target);
+            break;
+        case "dependency_of":
+            text = dependencyOf(graph, intent.target);
+            break;
+        case "dependents_of":
+            text = dependentsOf(graph, intent.target);
+            break;
+        case "module_summary":
+            text = moduleSummary(db, intent.target);
+            break;
+        case "entry_points":
+            text = findEntryPoints(db);
+            break;
+        case "largest_files":
+            text = findLargestFiles(db);
+            break;
+        case "symbol_search":
+            text = symbolSearch(graph, intent.target ?? query);
+            break;
+    }
+    return {
+        content: [{ type: "text", text }],
+    };
+}
+function classifyIntent(query) {
+    // Endpoints / routes / API
+    if (/\b(endpoint|route|api|handler|controller)\b/.test(query)) {
+        return { type: "find_endpoints" };
+    }
+    // Classes
+    if (/\b(class|classes)\b/.test(query) && !/depend/.test(query)) {
+        const target = extractTarget(query);
+        return { type: "find_classes", target };
+    }
+    // Interfaces
+    if (/\b(interface|interfaces|contract)\b/.test(query)) {
+        const target = extractTarget(query);
+        return { type: "find_interfaces", target };
+    }
+    // Functions
+    if (/\b(function|functions|method|methods)\b/.test(query) && !/depend/.test(query)) {
+        const target = extractTarget(query);
+        return { type: "find_functions", target };
+    }
+    // Exports
+    if (/\b(export|exports|public api)\b/.test(query)) {
+        const target = extractTarget(query);
+        return { type: "find_exports", target };
+    }
+    // Dependency / imports: "what does X depend on" / "what does X import"
+    if (/\b(depend on|depends on|import|imports from|uses)\b/.test(query)) {
+        const target = extractTarget(query);
+        if (target)
+            return { type: "dependency_of", target };
+    }
+    // Dependents: "what depends on X" / "who uses X" / "what references X"
+    if (/\b(depends on|depend on|who uses|what uses|references|consumers of|callers of)\b/.test(query)) {
+        const target = extractAfter(query, /(?:depends? on|who uses|what uses|references|consumers of|callers of)\s+/);
+        if (target)
+            return { type: "dependents_of", target };
+    }
+    // Module summary: "what does X do" / "describe X" / "summarize X"
+    if (/\b(what does|describe|summarize|overview|about)\b/.test(query)) {
+        const target = extractTarget(query);
+        if (target)
+            return { type: "module_summary", target };
+    }
+    // Entry points
+    if (/\b(entry point|main|entrypoint|start)\b/.test(query)) {
+        return { type: "entry_points" };
+    }
+    // Largest / most complex
+    if (/\b(largest|biggest|most complex|most symbols)\b/.test(query)) {
+        return { type: "largest_files" };
+    }
+    // Fallback: symbol search
+    const target = extractTarget(query);
+    return { type: "symbol_search", target: target || query };
+}
+function extractTarget(query) {
+    // Try to extract a meaningful target from the query
+    // Look for quoted strings first
+    const quoted = query.match(/["'`]([^"'`]+)["'`]/);
+    if (quoted)
+        return quoted[1];
+    // Look for file-like patterns
+    const fileLike = query.match(/\b([\w/.-]+\.\w+)\b/);
+    if (fileLike)
+        return fileLike[1];
+    // Look for CamelCase or specific identifiers
+    const camel = query.match(/\b([A-Z][a-zA-Z0-9]+)\b/);
+    if (camel)
+        return camel[1];
+    // Try to extract noun after common prepositions
+    const afterPrep = query.match(/(?:in|from|of|about|the)\s+(\w+)/);
+    if (afterPrep)
+        return afterPrep[1];
+    return undefined;
+}
+function extractAfter(query, pattern) {
+    const match = query.match(pattern);
+    if (!match)
+        return undefined;
+    const rest = query.substring(match.index + match[0].length).trim();
+    // Take the first word or quoted string
+    const quoted = rest.match(/^["'`]([^"'`]+)["'`]/);
+    if (quoted)
+        return quoted[1];
+    const word = rest.match(/^([\w./-]+)/);
+    return word?.[1];
+}
+function findEndpoints(db) {
+    // Look for common endpoint patterns: route handlers, HTTP methods, decorators
+    const patterns = [
+        "app.get", "app.post", "app.put", "app.delete", "app.patch",
+        "router.get", "router.post", "router.put", "router.delete",
+        "GET", "POST", "PUT", "DELETE", "PATCH",
+        "RequestMapping", "GetMapping", "PostMapping",
+        "handle", "handler", "endpoint",
+    ];
+    const results = [];
+    // Search for handler-like functions
+    const handlerRows = db.prepare(`
+    SELECT s.name, s.kind, f.path as file, s.line_start as line, s.signature as sig
+    FROM symbols s
+    JOIN files f ON s.file_id = f.id
+    WHERE (s.name LIKE '%handler%' OR s.name LIKE '%Handler%'
+           OR s.name LIKE '%endpoint%' OR s.name LIKE '%Endpoint%'
+           OR s.name LIKE '%route%' OR s.name LIKE '%Route%'
+           OR s.name LIKE '%controller%' OR s.name LIKE '%Controller%')
+      AND s.kind IN ('function', 'method', 'class')
+    ORDER BY f.path, s.line_start
+    LIMIT 50
+  `).all();
+    results.push(...handlerRows);
+    // Search for HTTP method references
+    const refRows = db.prepare(`
+    SELECT DISTINCT s.name, s.kind, f.path as file, s.line_start as line, s.signature as sig
+    FROM references_ r
+    JOIN symbols s ON r.from_symbol_id = s.id
+    JOIN files f ON s.file_id = f.id
+    WHERE r.to_symbol_bare_name IN ('get', 'post', 'put', 'delete', 'patch')
+      AND r.kind = 'call'
+    ORDER BY f.path, s.line_start
+    LIMIT 50
+  `).all();
+    results.push(...refRows);
+    if (results.length === 0) {
+        return "No API endpoints or route handlers found in the indexed codebase.";
+    }
+    const lines = ["# API Endpoints & Handlers\n"];
+    const seen = new Set();
+    for (const r of results) {
+        const key = `${r.file}:${r.line}:${r.name}`;
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        const sig = r.sig ? ` -- \`${r.sig}\`` : "";
+        lines.push(`- **${r.name}** (${r.kind}) in \`${r.file}:${r.line}\`${sig}`);
+    }
+    return lines.join("\n");
+}
+function findByKind(db, kind, target) {
+    const filter = target
+        ? `AND (s.name LIKE ? OR f.path LIKE ?)`
+        : "";
+    const params = [kind];
+    if (target) {
+        params.push(`%${target}%`, `%${target}%`);
+    }
+    const rows = db.prepare(`
+    SELECT s.name, s.kind, f.path as file, s.line_start as line, s.signature as sig, s.is_exported as exported
+    FROM symbols s
+    JOIN files f ON s.file_id = f.id
+    WHERE s.kind = ? ${filter}
+    ORDER BY s.is_exported DESC, f.path, s.line_start
+    LIMIT 50
+  `).all(...params);
+    if (rows.length === 0) {
+        return target
+            ? `No ${kind}s found matching "${target}".`
+            : `No ${kind}s found in the indexed codebase.`;
+    }
+    const label = kind.charAt(0).toUpperCase() + kind.slice(1);
+    const lines = [`# ${label}s${target ? ` matching "${target}"` : ""}\n`];
+    for (const r of rows) {
+        const exp = r.exported ? " (exported)" : "";
+        const sig = r.sig ? ` -- \`${r.sig}\`` : "";
+        lines.push(`- **${r.name}**${exp} in \`${r.file}:${r.line}\`${sig}`);
+    }
+    return lines.join("\n");
+}
+function findExports(db, target) {
+    const filter = target ? `AND f.path LIKE ?` : "";
+    const params = [];
+    if (target)
+        params.push(`%${target}%`);
+    const rows = db.prepare(`
+    SELECT s.name, s.kind, f.path as file, s.line_start as line, s.signature as sig
+    FROM symbols s
+    JOIN files f ON s.file_id = f.id
+    WHERE s.is_exported = 1 ${filter}
+    ORDER BY f.path, s.line_start
+    LIMIT 100
+  `).all(...params);
+    if (rows.length === 0) {
+        return target
+            ? `No exports found in files matching "${target}".`
+            : "No exported symbols found.";
+    }
+    const lines = [`# Exported Symbols${target ? ` (${target})` : ""}\n`];
+    // Group by file
+    const byFile = new Map();
+    for (const r of rows) {
+        const list = byFile.get(r.file) ?? [];
+        list.push(r);
+        byFile.set(r.file, list);
+    }
+    for (const [file, symbols] of byFile) {
+        lines.push(`## ${file}`);
+        for (const s of symbols) {
+            const sig = s.sig ? ` -- \`${s.sig}\`` : "";
+            lines.push(`  - ${s.kind} **${s.name}**${sig}`);
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+function dependencyOf(graph, target) {
+    const db = graph.getDb();
+    // Find files matching the target
+    const files = db.prepare(`
+    SELECT f.path, i.source_path as importSource, i.imported_name as importedName
+    FROM files f
+    JOIN imports i ON i.file_id = f.id
+    WHERE f.path LIKE ?
+    ORDER BY f.path, i.line
+    LIMIT 100
+  `).all(`%${target}%`);
+    if (files.length === 0) {
+        return `No imports found for files matching "${target}". The file may not import anything or may not be indexed.`;
+    }
+    const lines = [`# Dependencies of "${target}"\n`];
+    const byFile = new Map();
+    for (const r of files) {
+        const list = byFile.get(r.path) ?? [];
+        list.push({ source: r.importSource, name: r.importedName });
+        byFile.set(r.path, list);
+    }
+    for (const [file, deps] of byFile) {
+        lines.push(`## ${file}`);
+        for (const d of deps) {
+            lines.push(`  - \`${d.name}\` from \`${d.source}\``);
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+function dependentsOf(graph, target) {
+    const refs = graph.getReferences(target, 2);
+    if (refs.length === 0) {
+        return `No dependents found for "${target}". It may not be referenced by other symbols.`;
+    }
+    const lines = [`# Dependents of "${target}"\n`];
+    const byFile = new Map();
+    for (const r of refs) {
+        const list = byFile.get(r.fromFile) ?? [];
+        list.push(r);
+        byFile.set(r.fromFile, list);
+    }
+    for (const [file, fileRefs] of byFile) {
+        lines.push(`## ${file}`);
+        for (const r of fileRefs) {
+            lines.push(`  - **${r.fromSymbol}** (${r.fromKind}) --[${r.refKind}]--> ${r.toSymbol} (line ${r.refLine})`);
+        }
+        lines.push("");
+    }
+    lines.push(`\n**${refs.length} total references across ${byFile.size} files**`);
+    return lines.join("\n");
+}
+function moduleSummary(db, target) {
+    if (!target)
+        return "Please specify a module or file to summarize.";
+    // Find matching files
+    const files = db.prepare(`
+    SELECT id, path FROM files WHERE path LIKE ? LIMIT 10
+  `).all(`%${target}%`);
+    if (files.length === 0) {
+        return `No files found matching "${target}".`;
+    }
+    const lines = [`# Module Summary: "${target}"\n`];
+    for (const file of files) {
+        const symbols = db.prepare(`
+      SELECT name, kind, line_start as line, signature as sig, is_exported as exported
+      FROM symbols WHERE file_id = ?
+      ORDER BY line_start
+    `).all(file.id);
+        const imports = db.prepare(`
+      SELECT source_path as source, imported_name as name FROM imports WHERE file_id = ?
+    `).all(file.id);
+        lines.push(`## ${file.path}`);
+        if (imports.length > 0) {
+            lines.push(`\n**Imports:** ${imports.map((i) => `\`${i.name}\` from \`${i.source}\``).join(", ")}`);
+        }
+        const exported = symbols.filter((s) => s.exported);
+        const internal = symbols.filter((s) => !s.exported);
+        if (exported.length > 0) {
+            lines.push(`\n**Exports (${exported.length}):**`);
+            for (const s of exported) {
+                const sig = s.sig ? ` -- \`${s.sig}\`` : "";
+                lines.push(`  - ${s.kind} **${s.name}**${sig}`);
+            }
+        }
+        if (internal.length > 0) {
+            lines.push(`\n**Internal (${internal.length}):**`);
+            for (const s of internal) {
+                lines.push(`  - ${s.kind} ${s.name}`);
+            }
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+function findEntryPoints(db) {
+    // Entry points: main functions, index files, files with no importers
+    const mainFuncs = db.prepare(`
+    SELECT s.name, s.kind, f.path as file, s.line_start as line
+    FROM symbols s
+    JOIN files f ON s.file_id = f.id
+    WHERE s.name IN ('main', 'Main', 'run', 'start', 'init', 'bootstrap', 'setup')
+      AND s.kind IN ('function', 'method')
+    ORDER BY f.path
+    LIMIT 20
+  `).all();
+    const indexFiles = db.prepare(`
+    SELECT path FROM files
+    WHERE path LIKE '%/index.%' OR path LIKE '%/main.%' OR path LIKE '%/app.%' OR path LIKE '%/server.%'
+    ORDER BY path
+    LIMIT 20
+  `).all();
+    const lines = ["# Entry Points\n"];
+    if (mainFuncs.length > 0) {
+        lines.push("## Main Functions");
+        for (const f of mainFuncs) {
+            lines.push(`  - **${f.name}** (${f.kind}) in \`${f.file}:${f.line}\``);
+        }
+        lines.push("");
+    }
+    if (indexFiles.length > 0) {
+        lines.push("## Entry Files");
+        for (const f of indexFiles) {
+            lines.push(`  - \`${f.path}\``);
+        }
+        lines.push("");
+    }
+    if (mainFuncs.length === 0 && indexFiles.length === 0) {
+        return "No obvious entry points found. Look for files named main.*, index.*, app.*, or functions named main/run/start.";
+    }
+    return lines.join("\n");
+}
+function findLargestFiles(db) {
+    const rows = db.prepare(`
+    SELECT f.path, COUNT(s.id) as symbolCount
+    FROM files f
+    LEFT JOIN symbols s ON s.file_id = f.id
+    GROUP BY f.id
+    ORDER BY symbolCount DESC
+    LIMIT 20
+  `).all();
+    if (rows.length === 0) {
+        return "No files indexed yet.";
+    }
+    const lines = ["# Largest Files by Symbol Count\n"];
+    for (const r of rows) {
+        lines.push(`- **${r.symbolCount}** symbols -- \`${r.path}\``);
+    }
+    return lines.join("\n");
+}
+function symbolSearch(graph, target) {
+    const results = graph.findSymbols({ name: target, limit: 30 });
+    if (results.length === 0) {
+        return `No symbols found matching "${target}". Try a different search term or run reindex.`;
+    }
+    const lines = [`# Symbols matching "${target}"\n`];
+    for (const r of results) {
+        const sig = r.signature ? ` -- \`${r.signature}\`` : "";
+        const exp = r.isExported ? " (exported)" : "";
+        lines.push(`- ${r.kind} **${r.name}**${exp} in \`${r.filePath}:${r.lineStart}\`${sig}`);
+    }
+    return lines.join("\n");
+}
+//# sourceMappingURL=natural-language-query.js.map

package/dist/tools/natural-language-query.js.map

@@ -0,0 +1 @@
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package/dist/tools/reindex.d.ts

@@ -0,0 +1,15 @@
+import { FileWatcher } from "../indexer/file-watcher.js";
+export declare const reindexTool: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: "object";
+        properties: {};
+    };
+};
+export declare function handleReindex(watcher: FileWatcher): Promise<{
+    content: {
+        type: "text";
+        text: string;
+    }[];
+}>;

package/dist/tools/reindex.js

@@ -0,0 +1,20 @@
+export const reindexTool = {
+    name: "reindex",
+    description: "Trigger a full re-index of the codebase. Useful after major changes or when results seem stale.",
+    inputSchema: {
+        type: "object",
+        properties: {},
+    },
+};
+export async function handleReindex(watcher) {
+    await watcher.initialIndex();
+    return {
+        content: [
+            {
+                type: "text",
+                text: "Re-indexing complete.",
+            },
+        ],
+    };
+}
+//# sourceMappingURL=reindex.js.map

package/dist/tools/reindex.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"reindex.js","sourceRoot":"","sources":["../../src/tools/reindex.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,WAAW,GAAG;IACzB,IAAI,EAAE,SAAS;IACf,WAAW,EAAE,iGAAiG;IAC9G,WAAW,EAAE;QACX,IAAI,EAAE,QAAiB;QACvB,UAAU,EAAE,EAAE;KACf;CACF,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,OAAoB;IACtD,MAAM,OAAO,CAAC,YAAY,EAAE,CAAC;IAE7B,OAAO;QACL,OAAO,EAAE;YACP;gBACE,IAAI,EAAE,MAAe;gBACrB,IAAI,EAAE,uBAAuB;aAC9B;SACF;KACF,CAAC;AACJ,CAAC"}

package/dist/tools/semantic-diff.d.ts

@@ -0,0 +1,32 @@
+import { CodeGraph } from "../graph/code-graph.js";
+export declare const semanticDiffTool: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: "object";
+        properties: {
+            git_ref: {
+                type: string;
+                description: string;
+            };
+            diff: {
+                type: string;
+                description: string;
+            };
+            depth: {
+                type: string;
+                description: string;
+            };
+        };
+    };
+};
+export declare function handleSemanticDiff(graph: CodeGraph, args: {
+    diff?: string;
+    git_ref?: string;
+    depth?: number;
+}, projectRoot?: string): {
+    content: {
+        type: "text";
+        text: string;
+    }[];
+};