mcp-codebase-intelligence 0.1.0

package/dist/tools/semantic-diff.js

@@ -0,0 +1,407 @@
+import { execSync } from "child_process";
+export const semanticDiffTool = {
+    name: "semantic_diff",
+    description: "Analyze the semantic impact of a git diff or code change. Identifies which symbols were modified/added/removed, finds all downstream dependents, and produces a structured impact report. Preferred: use `git_ref` (e.g. 'HEAD~1', 'HEAD~5', 'main', 'staged') to let the tool run git diff directly — avoids truncation of large diffs. Alternatively pass raw diff text via `diff`.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            git_ref: {
+                type: "string",
+                description: "Git ref to diff against (e.g. 'HEAD~1', 'HEAD~5', 'main', 'staged', 'unstaged'). The tool runs git diff internally — use this instead of passing diff text to avoid truncation.",
+            },
+            diff: {
+                type: "string",
+                description: "Raw unified diff text. Only use if git_ref is not applicable (e.g. for non-git diffs).",
+            },
+            depth: {
+                type: "number",
+                description: "How many levels of transitive dependents to follow (default: 2, max: 5)",
+            },
+        },
+    },
+};
+export function handleSemanticDiff(graph, args, projectRoot) {
+    const depth = Math.min(Math.max(args.depth ?? 2, 1), 5);
+    let diffText = args.diff ?? "";
+    // If git_ref is provided, run git diff directly to avoid AI truncation
+    if (args.git_ref && projectRoot) {
+        try {
+            const ref = args.git_ref.trim();
+            let cmd;
+            if (ref === "staged") {
+                cmd = "git diff --staged";
+            }
+            else if (ref === "unstaged") {
+                cmd = "git diff";
+            }
+            else {
+                // Sanitize: only allow safe git ref characters
+                const safeRef = ref.replace(/[^a-zA-Z0-9_.~\-/^]/g, "");
+                cmd = `git diff ${safeRef}`;
+            }
+            diffText = execSync(cmd, {
+                cwd: projectRoot,
+                maxBuffer: 10 * 1024 * 1024, // 10MB
+                encoding: "utf-8",
+            });
+        }
+        catch (err) {
+            const message = err instanceof Error ? err.message : String(err);
+            return {
+                content: [
+                    {
+                        type: "text",
+                        text: `Failed to run git diff: ${message}`,
+                    },
+                ],
+            };
+        }
+    }
+    if (!diffText) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: "No diff provided. Use `git_ref` (e.g. 'HEAD~1', 'staged') or pass raw diff text via `diff`.",
+                },
+            ],
+        };
+    }
+    const hunks = parseDiff(diffText);
+    if (hunks.length === 0) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: "No file changes detected in the provided diff.",
+                },
+            ],
+        };
+    }
+    // Collect all affected symbols across all changed files
+    const allImpacts = [];
+    const filesSummary = [];
+    for (const hunk of hunks) {
+        const filePath = hunk.newFile !== "/dev/null" ? hunk.newFile : hunk.oldFile;
+        const linesChanged = hunk.addedLines.length + hunk.removedLines.length;
+        // Find symbols affected by this hunk
+        const affected = findAffectedSymbols(graph, hunk);
+        filesSummary.push({
+            file: filePath,
+            status: hunk.status,
+            symbolsAffected: affected.length,
+            linesChanged,
+        });
+        // For each affected symbol, find dependents
+        for (const sym of affected) {
+            const refs = graph.getReferences(sym.name, depth);
+            // Exclude self-references (same file, same symbol)
+            const externalRefs = refs.filter((r) => r.fromFile !== sym.filePath || r.fromSymbol !== sym.name);
+            const dependentFiles = [
+                ...new Set(externalRefs.map((r) => r.fromFile)),
+            ];
+            allImpacts.push({
+                symbol: sym,
+                directDependents: externalRefs.filter((r) => r.depth === 1).length,
+                totalDependents: externalRefs.length,
+                dependentFiles,
+                references: externalRefs.map((r) => ({
+                    fromSymbol: r.fromSymbol,
+                    fromFile: r.fromFile,
+                    fromLine: r.fromLine,
+                    refKind: r.refKind,
+                    depth: r.depth,
+                })),
+            });
+        }
+    }
+    // Build the report
+    return {
+        content: [
+            {
+                type: "text",
+                text: buildReport(hunks, filesSummary, allImpacts, depth),
+            },
+        ],
+    };
+}
+function buildReport(hunks, filesSummary, impacts, depth) {
+    const sections = [];
+    // --- Header ---
+    const totalFiles = hunks.length;
+    const totalSymbols = impacts.length;
+    const totalDependents = impacts.reduce((s, i) => s + i.totalDependents, 0);
+    const allDependentFiles = [
+        ...new Set(impacts.flatMap((i) => i.dependentFiles)),
+    ];
+    sections.push(`# Semantic Diff Analysis\n\n` +
+        `**${totalFiles} file(s) changed** → **${totalSymbols} symbol(s) affected** → **${totalDependents} dependent(s)** across **${allDependentFiles.length} file(s)**`);
+    // --- Files Changed ---
+    sections.push(`\n## Files Changed\n`);
+    for (const f of filesSummary) {
+        const statusIcon = f.status === "added"
+            ? "+"
+            : f.status === "deleted"
+                ? "-"
+                : f.status === "renamed"
+                    ? "→"
+                    : "M";
+        sections.push(`  ${statusIcon} ${f.file} (${f.linesChanged} lines, ${f.symbolsAffected} symbols)`);
+    }
+    // --- Modified Symbols ---
+    if (impacts.length > 0) {
+        sections.push(`\n## Affected Symbols\n`);
+        // Group by change type
+        const added = impacts.filter((i) => i.symbol.changeType === "added");
+        const modified = impacts.filter((i) => i.symbol.changeType === "modified");
+        const removed = impacts.filter((i) => i.symbol.changeType === "removed");
+        if (added.length > 0) {
+            sections.push(`### Added`);
+            for (const i of added) {
+                const sig = i.symbol.signature ? ` — \`${i.symbol.signature}\`` : "";
+                sections.push(`  + ${i.symbol.kind} **${i.symbol.name}**${sig}`);
+            }
+        }
+        if (modified.length > 0) {
+            sections.push(`### Modified`);
+            for (const i of modified) {
+                const sig = i.symbol.signature ? ` — \`${i.symbol.signature}\`` : "";
+                const deps = i.totalDependents > 0
+                    ? ` (${i.directDependents} direct, ${i.totalDependents} total dependents)`
+                    : "";
+                sections.push(`  M ${i.symbol.kind} **${i.symbol.name}**${sig}${deps}`);
+            }
+        }
+        if (removed.length > 0) {
+            sections.push(`### Removed`);
+            for (const i of removed) {
+                const deps = i.totalDependents > 0
+                    ? ` ⚠️ **${i.totalDependents} broken reference(s)**`
+                    : "";
+                sections.push(`  - ${i.symbol.kind} **${i.symbol.name}**${deps}`);
+            }
+        }
+    }
+    // --- Impact Details ---
+    const impactsWithDeps = impacts.filter((i) => i.totalDependents > 0);
+    if (impactsWithDeps.length > 0) {
+        sections.push(`\n## Impact Details\n`);
+        for (const impact of impactsWithDeps) {
+            sections.push(`### ${impact.symbol.kind} \`${impact.symbol.name}\` (${impact.symbol.filePath}:${impact.symbol.lineStart})`);
+            // Group dependents by file
+            const byFile = new Map();
+            for (const ref of impact.references) {
+                const list = byFile.get(ref.fromFile) ?? [];
+                list.push(ref);
+                byFile.set(ref.fromFile, list);
+            }
+            for (const [file, refs] of byFile) {
+                const lines = refs
+                    .map((r) => `    ${r.fromSymbol} (line ${r.fromLine}) --[${r.refKind}]-->`)
+                    .join("\n");
+                sections.push(`  ${file}:\n${lines}`);
+            }
+        }
+    }
+    // --- Risk Assessment ---
+    const removedWithDeps = impacts.filter((i) => i.symbol.changeType === "removed" && i.totalDependents > 0);
+    const highImpact = impacts.filter((i) => i.totalDependents > 5);
+    if (removedWithDeps.length > 0 || highImpact.length > 0) {
+        sections.push(`\n## ⚠️ Risk Assessment\n`);
+        if (removedWithDeps.length > 0) {
+            sections.push(`**Breaking changes detected:** ${removedWithDeps.length} removed symbol(s) with active references:`);
+            for (const i of removedWithDeps) {
+                sections.push(`  - \`${i.symbol.name}\` is referenced ${i.totalDependents} time(s) in ${i.dependentFiles.length} file(s): ${i.dependentFiles.join(", ")}`);
+            }
+        }
+        if (highImpact.length > 0) {
+            sections.push(`\n**High-impact changes:** ${highImpact.length} symbol(s) with >5 dependents:`);
+            for (const i of highImpact) {
+                sections.push(`  - \`${i.symbol.name}\` → ${i.totalDependents} dependents across ${i.dependentFiles.length} files`);
+            }
+        }
+    }
+    return sections.join("\n");
+}
+// --- Diff Parsing ---
+function parseDiff(diffText) {
+    const hunks = [];
+    const lines = diffText.split("\n");
+    let i = 0;
+    while (i < lines.length) {
+        // Find diff header: "diff --git a/path b/path"
+        if (!lines[i].startsWith("diff --git")) {
+            i++;
+            continue;
+        }
+        const diffLine = lines[i];
+        i++;
+        // Parse file paths
+        let oldFile = "";
+        let newFile = "";
+        let status = "modified";
+        // Look for --- and +++ lines
+        while (i < lines.length && !lines[i].startsWith("@@")) {
+            if (lines[i].startsWith("--- ")) {
+                oldFile = lines[i].substring(4);
+                if (oldFile.startsWith("a/"))
+                    oldFile = oldFile.substring(2);
+                if (oldFile === "/dev/null")
+                    status = "added";
+            }
+            else if (lines[i].startsWith("+++ ")) {
+                newFile = lines[i].substring(4);
+                if (newFile.startsWith("b/"))
+                    newFile = newFile.substring(2);
+                if (newFile === "/dev/null")
+                    status = "deleted";
+            }
+            else if (lines[i].startsWith("rename from")) {
+                status = "renamed";
+            }
+            i++;
+        }
+        // If no --- / +++ found, try to extract from the diff --git line
+        if (!oldFile && !newFile) {
+            const match = diffLine.match(/diff --git a\/(.+) b\/(.+)/);
+            if (match) {
+                oldFile = match[1];
+                newFile = match[2];
+            }
+        }
+        // Parse hunks for this file
+        const addedLines = [];
+        const removedLines = [];
+        let minLine = Infinity;
+        let maxLine = 0;
+        while (i < lines.length && !lines[i].startsWith("diff --git")) {
+            if (lines[i].startsWith("@@")) {
+                // Parse hunk header: @@ -old,count +new,count @@
+                const match = lines[i].match(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/);
+                if (match) {
+                    let oldLineNum = parseInt(match[1], 10);
+                    let newLineNum = parseInt(match[2], 10);
+                    i++;
+                    while (i < lines.length &&
+                        !lines[i].startsWith("@@") &&
+                        !lines[i].startsWith("diff --git")) {
+                        if (lines[i].startsWith("+") && !lines[i].startsWith("+++")) {
+                            addedLines.push(newLineNum);
+                            minLine = Math.min(minLine, newLineNum);
+                            maxLine = Math.max(maxLine, newLineNum);
+                            newLineNum++;
+                        }
+                        else if (lines[i].startsWith("-") && !lines[i].startsWith("---")) {
+                            removedLines.push(oldLineNum);
+                            minLine = Math.min(minLine, oldLineNum);
+                            maxLine = Math.max(maxLine, oldLineNum);
+                            oldLineNum++;
+                        }
+                        else {
+                            // Context line
+                            oldLineNum++;
+                            newLineNum++;
+                        }
+                        i++;
+                    }
+                }
+                else {
+                    i++;
+                }
+            }
+            else {
+                i++;
+            }
+        }
+        if (minLine === Infinity)
+            minLine = 1;
+        if (maxLine === 0)
+            maxLine = minLine;
+        hunks.push({
+            filePath: newFile || oldFile,
+            oldFile,
+            newFile,
+            addedLines,
+            removedLines,
+            changedLineStart: minLine,
+            changedLineEnd: maxLine,
+            status,
+        });
+    }
+    return hunks;
+}
+// --- Symbol Impact Detection ---
+function findAffectedSymbols(graph, hunk) {
+    const result = [];
+    if (hunk.status === "added") {
+        // New file — all symbols are "added"
+        const symbols = graph.findSymbols({ scope: hunk.newFile, limit: 100 });
+        for (const sym of symbols) {
+            if (sym.filePath === hunk.newFile || sym.filePath.endsWith("/" + hunk.newFile)) {
+                result.push({
+                    ...sym,
+                    filePath: sym.filePath,
+                    changeType: "added",
+                });
+            }
+        }
+        return result;
+    }
+    if (hunk.status === "deleted") {
+        // Deleted file — find symbols from old index (they might still be in DB)
+        const symbols = graph.findSymbols({ scope: hunk.oldFile, limit: 100 });
+        for (const sym of symbols) {
+            if (sym.filePath === hunk.oldFile || sym.filePath.endsWith("/" + hunk.oldFile)) {
+                result.push({
+                    ...sym,
+                    filePath: sym.filePath,
+                    changeType: "removed",
+                });
+            }
+        }
+        return result;
+    }
+    // Modified file — find symbols that overlap with changed lines
+    const filePath = hunk.newFile;
+    // Try both the path as-is and with the project root
+    const db = graph.getDb();
+    // Find the file in the index — try exact match and suffix match
+    const fileRow = db
+        .prepare(`SELECT id, path FROM files WHERE path = ? OR path LIKE ?`)
+        .get(filePath, `%/${filePath}`);
+    if (!fileRow)
+        return result;
+    const actualPath = fileRow.path;
+    // Get all symbols in this file
+    const allSymbols = db
+        .prepare(`SELECT name, kind, line_start as lineStart, line_end as lineEnd, signature
+       FROM symbols WHERE file_id = ? ORDER BY line_start`)
+        .all(fileRow.id);
+    // Check which symbols overlap with changed lines
+    const changedLineSet = new Set([...hunk.addedLines, ...hunk.removedLines]);
+    for (const sym of allSymbols) {
+        let overlaps = false;
+        // Check if any changed line falls within this symbol's range
+        for (const line of changedLineSet) {
+            if (line >= sym.lineStart && line <= sym.lineEnd) {
+                overlaps = true;
+                break;
+            }
+        }
+        // Also check using the hunk's overall range
+        if (!overlaps &&
+            sym.lineStart <= hunk.changedLineEnd &&
+            sym.lineEnd >= hunk.changedLineStart) {
+            overlaps = true;
+        }
+        if (overlaps) {
+            result.push({
+                ...sym,
+                filePath: actualPath,
+                changeType: "modified",
+            });
+        }
+    }
+    return result;
+}
+//# sourceMappingURL=semantic-diff.js.map

package/dist/tools/semantic-diff.js.map

@@ -0,0 +1 @@
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package/dist/utils/logger.d.ts

@@ -0,0 +1,6 @@
+export declare const logger: {
+    debug: (msg: string, data?: unknown) => void;
+    info: (msg: string, data?: unknown) => void;
+    warn: (msg: string, data?: unknown) => void;
+    error: (msg: string, data?: unknown) => void;
+};

package/dist/utils/logger.js

@@ -0,0 +1,15 @@
+const LOG_LEVELS = { debug: 0, info: 1, warn: 2, error: 3 };
+const currentLevel = process.env.LOG_LEVEL || "info";
+function log(level, message, data) {
+    if (LOG_LEVELS[level] < LOG_LEVELS[currentLevel])
+        return;
+    const entry = { timestamp: new Date().toISOString(), level, message, ...(data ? { data } : {}) };
+    process.stderr.write(JSON.stringify(entry) + "\n");
+}
+export const logger = {
+    debug: (msg, data) => log("debug", msg, data),
+    info: (msg, data) => log("info", msg, data),
+    warn: (msg, data) => log("warn", msg, data),
+    error: (msg, data) => log("error", msg, data),
+};
+//# sourceMappingURL=logger.js.map

package/dist/utils/logger.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"logger.js","sourceRoot":"","sources":["../../src/utils/logger.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAW,CAAC;AAGrE,MAAM,YAAY,GAAc,OAAO,CAAC,GAAG,CAAC,SAAsB,IAAI,MAAM,CAAC;AAE7E,SAAS,GAAG,CAAC,KAAe,EAAE,OAAe,EAAE,IAAc;IAC3D,IAAI,UAAU,CAAC,KAAK,CAAC,GAAG,UAAU,CAAC,YAAY,CAAC;QAAE,OAAO;IACzD,MAAM,KAAK,GAAG,EAAE,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC;IACjG,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAC,MAAM,MAAM,GAAG;IACpB,KAAK,EAAE,CAAC,GAAW,EAAE,IAAc,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,EAAE,IAAI,CAAC;IAC/D,IAAI,EAAE,CAAC,GAAW,EAAE,IAAc,EAAE,EAAE,CAAC,GAAG,CAAC,MAAM,EAAE,GAAG,EAAE,IAAI,CAAC;IAC7D,IAAI,EAAE,CAAC,GAAW,EAAE,IAAc,EAAE,EAAE,CAAC,GAAG,CAAC,MAAM,EAAE,GAAG,EAAE,IAAI,CAAC;IAC7D,KAAK,EAAE,CAAC,GAAW,EAAE,IAAc,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,EAAE,IAAI,CAAC;CAChE,CAAC"}

package/package.json

@@ -0,0 +1,68 @@
+{
+  "name": "mcp-codebase-intelligence",
+  "version": "0.1.0",
+  "description": "MCP server providing semantic code intelligence — symbol search, references, call graphs, impact analysis, and architecture diagrams via tree-sitter",
+  "type": "module",
+  "main": "dist/index.js",
+  "bin": {
+    "mcp-codebase-intelligence": "dist/index.js"
+  },
+  "files": [
+    "dist",
+    "LICENSE",
+    "README.md"
+  ],
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsx src/index.ts",
+    "start": "node dist/index.js",
+    "test": "node --import tsx --test tests/*.test.ts",
+    "typecheck": "tsc --noEmit",
+    "prepublishOnly": "npm run build"
+  },
+  "keywords": [
+    "mcp",
+    "model-context-protocol",
+    "code-intelligence",
+    "tree-sitter",
+    "static-analysis",
+    "semantic-diff",
+    "code-review",
+    "typescript",
+    "python",
+    "go",
+    "rust",
+    "java"
+  ],
+  "author": "Gaurav Tiwari <tiwarigaurav1992@gmail.com>",
+  "license": "MIT",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/g-tiwari/mcp-codebase-intelligence.git"
+  },
+  "homepage": "https://github.com/g-tiwari/mcp-codebase-intelligence",
+  "bugs": {
+    "url": "https://github.com/g-tiwari/mcp-codebase-intelligence/issues"
+  },
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.27.1",
+    "better-sqlite3": "^12.8.0",
+    "chokidar": "^5.0.0",
+    "glob": "^13.0.6",
+    "tree-sitter": "^0.21.1",
+    "tree-sitter-go": "^0.21.0",
+    "tree-sitter-java": "^0.21.0",
+    "tree-sitter-python": "^0.21.0",
+    "tree-sitter-rust": "^0.21.0",
+    "tree-sitter-typescript": "^0.23.2",
+    "typescript-language-server": "^5.1.3",
+    "vscode-languageserver-protocol": "^3.17.5",
+    "zod": "^3.25.76"
+  },
+  "devDependencies": {
+    "@types/better-sqlite3": "^7.6.13",
+    "@types/node": "^25.5.0",
+    "tsx": "^4.21.0",
+    "typescript": "^5.9.3"
+  }
+}