matterviz 0.3.6 → 0.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/EmptyState.svelte.d.ts +9 -0
- package/dist/FilePicker.svelte +360 -0
- package/dist/FilePicker.svelte.d.ts +17 -0
- package/dist/Icon.svelte +44 -0
- package/dist/Icon.svelte.d.ts +13 -0
- package/dist/MillerIndexInput.svelte +66 -0
- package/dist/MillerIndexInput.svelte.d.ts +7 -0
- package/dist/api/mp.d.ts +6 -0
- package/dist/api/mp.js +22 -0
- package/dist/api/optimade.d.ts +45 -0
- package/dist/api/optimade.js +141 -0
- package/dist/app.css +244 -0
- package/dist/brillouin/BrillouinZone.svelte +554 -0
- package/dist/brillouin/BrillouinZone.svelte.d.ts +84 -0
- package/dist/brillouin/BrillouinZoneControls.svelte +144 -0
- package/dist/brillouin/BrillouinZoneControls.svelte.d.ts +17 -0
- package/dist/brillouin/BrillouinZoneExportPane.svelte +146 -0
- package/dist/brillouin/BrillouinZoneExportPane.svelte.d.ts +15 -0
- package/dist/brillouin/BrillouinZoneInfoPane.svelte +146 -0
- package/dist/brillouin/BrillouinZoneInfoPane.svelte.d.ts +13 -0
- package/dist/brillouin/BrillouinZoneScene.svelte +522 -0
- package/dist/brillouin/BrillouinZoneScene.svelte.d.ts +49 -0
- package/dist/brillouin/BrillouinZoneTooltip.svelte +83 -0
- package/dist/brillouin/BrillouinZoneTooltip.svelte.d.ts +8 -0
- package/dist/brillouin/compute.d.ts +17 -0
- package/dist/brillouin/compute.js +422 -0
- package/dist/brillouin/index.d.ts +8 -0
- package/dist/brillouin/index.js +7 -0
- package/dist/brillouin/types.d.ts +43 -0
- package/dist/brillouin/types.js +1 -0
- package/dist/chempot-diagram/ChemPotDiagram.svelte +328 -0
- package/dist/chempot-diagram/ChemPotDiagram.svelte.d.ts +13 -0
- package/dist/chempot-diagram/ChemPotDiagram2D.svelte +843 -0
- package/dist/chempot-diagram/ChemPotDiagram2D.svelte.d.ts +16 -0
- package/dist/chempot-diagram/ChemPotDiagram3D.svelte +3191 -0
- package/dist/chempot-diagram/ChemPotDiagram3D.svelte.d.ts +16 -0
- package/dist/chempot-diagram/ChemPotScene3D.svelte.d.ts +7 -0
- package/dist/chempot-diagram/async-compute.svelte.d.ts +3 -0
- package/dist/chempot-diagram/async-compute.svelte.js +80 -0
- package/dist/chempot-diagram/chempot-worker.d.ts +1 -0
- package/dist/chempot-diagram/chempot-worker.js +12 -0
- package/dist/chempot-diagram/color.d.ts +10 -0
- package/dist/chempot-diagram/color.js +32 -0
- package/dist/chempot-diagram/compute.d.ts +48 -0
- package/dist/chempot-diagram/compute.js +804 -0
- package/dist/chempot-diagram/index.d.ts +6 -0
- package/dist/chempot-diagram/index.js +6 -0
- package/dist/chempot-diagram/pointer.d.ts +16 -0
- package/dist/chempot-diagram/pointer.js +40 -0
- package/dist/chempot-diagram/temperature.d.ts +15 -0
- package/dist/chempot-diagram/temperature.js +34 -0
- package/dist/chempot-diagram/types.d.ts +81 -0
- package/dist/chempot-diagram/types.js +28 -0
- package/dist/colors/index.d.ts +47 -0
- package/dist/colors/index.js +204 -0
- package/dist/composition/BarChart.svelte +297 -0
- package/dist/composition/BarChart.svelte.d.ts +39 -0
- package/dist/composition/BubbleChart.svelte +218 -0
- package/dist/composition/BubbleChart.svelte.d.ts +28 -0
- package/dist/composition/Composition.svelte +165 -0
- package/dist/composition/Composition.svelte.d.ts +15 -0
- package/dist/composition/Formula.svelte +268 -0
- package/dist/composition/Formula.svelte.d.ts +19 -0
- package/dist/composition/FormulaFilter.svelte +1263 -0
- package/dist/composition/FormulaFilter.svelte.d.ts +51 -0
- package/dist/composition/PieChart.svelte +324 -0
- package/dist/composition/PieChart.svelte.d.ts +37 -0
- package/dist/composition/chem-sys.d.ts +8 -0
- package/dist/composition/chem-sys.js +85 -0
- package/dist/composition/format.d.ts +15 -0
- package/dist/composition/format.js +111 -0
- package/dist/composition/index.d.ts +21 -0
- package/dist/composition/index.js +15 -0
- package/dist/composition/parse.d.ts +56 -0
- package/dist/composition/parse.js +486 -0
- package/dist/constants.d.ts +29 -0
- package/dist/constants.js +99 -0
- package/dist/controls.d.ts +14 -0
- package/dist/controls.js +30 -0
- package/dist/convex-hull/ConvexHull.svelte +157 -0
- package/dist/convex-hull/ConvexHull.svelte.d.ts +13 -0
- package/dist/convex-hull/ConvexHull2D.svelte +827 -0
- package/dist/convex-hull/ConvexHull2D.svelte.d.ts +11 -0
- package/dist/convex-hull/ConvexHull3D.svelte +1801 -0
- package/dist/convex-hull/ConvexHull3D.svelte.d.ts +8 -0
- package/dist/convex-hull/ConvexHull4D.svelte +1394 -0
- package/dist/convex-hull/ConvexHull4D.svelte.d.ts +8 -0
- package/dist/convex-hull/ConvexHullControls.svelte +535 -0
- package/dist/convex-hull/ConvexHullControls.svelte.d.ts +48 -0
- package/dist/convex-hull/ConvexHullInfoPane.svelte +125 -0
- package/dist/convex-hull/ConvexHullInfoPane.svelte.d.ts +20 -0
- package/dist/convex-hull/ConvexHullStats.svelte +929 -0
- package/dist/convex-hull/ConvexHullStats.svelte.d.ts +17 -0
- package/dist/convex-hull/ConvexHullTooltip.svelte +131 -0
- package/dist/convex-hull/ConvexHullTooltip.svelte.d.ts +33 -0
- package/dist/convex-hull/GasPressureControls.svelte +247 -0
- package/dist/convex-hull/GasPressureControls.svelte.d.ts +11 -0
- package/dist/convex-hull/StructurePopup.svelte +151 -0
- package/dist/convex-hull/StructurePopup.svelte.d.ts +18 -0
- package/dist/convex-hull/TemperatureSlider.svelte +140 -0
- package/dist/convex-hull/TemperatureSlider.svelte.d.ts +8 -0
- package/dist/convex-hull/barycentric-coords.d.ts +18 -0
- package/dist/convex-hull/barycentric-coords.js +182 -0
- package/dist/convex-hull/demo-temperature.d.ts +6 -0
- package/dist/convex-hull/demo-temperature.js +38 -0
- package/dist/convex-hull/gas-thermodynamics.d.ts +16 -0
- package/dist/convex-hull/gas-thermodynamics.js +306 -0
- package/dist/convex-hull/helpers.d.ts +117 -0
- package/dist/convex-hull/helpers.js +718 -0
- package/dist/convex-hull/index.d.ts +119 -0
- package/dist/convex-hull/index.js +58 -0
- package/dist/convex-hull/thermodynamics.d.ts +67 -0
- package/dist/convex-hull/thermodynamics.js +1757 -0
- package/dist/convex-hull/types.d.ts +162 -0
- package/dist/convex-hull/types.js +36 -0
- package/dist/coordination/CoordinationBarPlot.svelte +311 -0
- package/dist/coordination/CoordinationBarPlot.svelte.d.ts +30 -0
- package/dist/coordination/calc-coordination.d.ts +15 -0
- package/dist/coordination/calc-coordination.js +63 -0
- package/dist/coordination/index.d.ts +8 -0
- package/dist/coordination/index.js +7 -0
- package/dist/effects.svelte.d.ts +12 -0
- package/dist/effects.svelte.js +37 -0
- package/dist/element/BohrAtom.svelte.d.ts +20 -0
- package/dist/element/ElementHeading.svelte +26 -0
- package/dist/element/ElementHeading.svelte.d.ts +8 -0
- package/dist/element/ElementPhoto.svelte +57 -0
- package/dist/element/ElementPhoto.svelte.d.ts +9 -0
- package/dist/element/ElementStats.svelte +80 -0
- package/dist/element/ElementStats.svelte.d.ts +8 -0
- package/dist/element/ElementTile.svelte +484 -0
- package/dist/element/ElementTile.svelte.d.ts +29 -0
- package/dist/element/Nucleus.svelte.d.ts +17 -0
- package/dist/element/data.d.ts +2 -0
- package/dist/element/data.js +2 -0
- package/dist/element/index.d.ts +8 -0
- package/dist/element/index.js +7 -0
- package/dist/element/types.d.ts +57 -0
- package/dist/element/types.js +1 -0
- package/dist/feedback/ClickFeedback.svelte +58 -0
- package/dist/feedback/ClickFeedback.svelte.d.ts +12 -0
- package/dist/feedback/DragOverlay.svelte +42 -0
- package/dist/feedback/DragOverlay.svelte.d.ts +7 -0
- package/dist/feedback/Spinner.svelte.d.ts +7 -0
- package/dist/feedback/StatusMessage.svelte.d.ts +9 -0
- package/dist/feedback/index.d.ts +4 -0
- package/dist/feedback/index.js +4 -0
- package/dist/fermi-surface/FermiSlice.svelte +197 -0
- package/dist/fermi-surface/FermiSlice.svelte.d.ts +24 -0
- package/dist/fermi-surface/FermiSurface.svelte +606 -0
- package/dist/fermi-surface/FermiSurface.svelte.d.ts +83 -0
- package/dist/fermi-surface/FermiSurfaceControls.svelte +448 -0
- package/dist/fermi-surface/FermiSurfaceControls.svelte.d.ts +35 -0
- package/dist/fermi-surface/FermiSurfaceScene.svelte +797 -0
- package/dist/fermi-surface/FermiSurfaceScene.svelte.d.ts +50 -0
- package/dist/fermi-surface/FermiSurfaceTooltip.svelte +85 -0
- package/dist/fermi-surface/FermiSurfaceTooltip.svelte.d.ts +8 -0
- package/dist/fermi-surface/compute.d.ts +5 -0
- package/dist/fermi-surface/compute.js +538 -0
- package/dist/fermi-surface/constants.d.ts +9 -0
- package/dist/fermi-surface/constants.js +27 -0
- package/dist/fermi-surface/export.d.ts +5 -0
- package/dist/fermi-surface/export.js +51 -0
- package/dist/fermi-surface/index.d.ts +12 -0
- package/dist/fermi-surface/index.js +13 -0
- package/dist/fermi-surface/marching-cubes.d.ts +2 -0
- package/dist/fermi-surface/marching-cubes.js +2 -0
- package/dist/fermi-surface/parse.d.ts +2 -0
- package/dist/fermi-surface/parse.js +494 -0
- package/dist/fermi-surface/symmetry.d.ts +3 -0
- package/dist/fermi-surface/symmetry.js +46 -0
- package/dist/fermi-surface/types.d.ts +111 -0
- package/dist/fermi-surface/types.js +4 -0
- package/dist/heatmap-matrix/HeatmapMatrix.svelte +1547 -0
- package/dist/heatmap-matrix/HeatmapMatrix.svelte.d.ts +110 -0
- package/dist/heatmap-matrix/HeatmapMatrixControls.svelte +225 -0
- package/dist/heatmap-matrix/HeatmapMatrixControls.svelte.d.ts +30 -0
- package/dist/heatmap-matrix/index.d.ts +53 -0
- package/dist/heatmap-matrix/index.js +100 -0
- package/dist/heatmap-matrix/shared.d.ts +2 -0
- package/dist/heatmap-matrix/shared.js +4 -0
- package/dist/icons.d.ts +569 -0
- package/dist/icons.js +648 -0
- package/dist/index.d.ts +39 -0
- package/dist/index.js +39 -0
- package/dist/io/decompress.d.ts +11 -0
- package/dist/io/decompress.js +76 -0
- package/dist/io/export.d.ts +16 -0
- package/dist/io/export.js +338 -0
- package/dist/io/fetch.d.ts +5 -0
- package/dist/io/fetch.js +43 -0
- package/dist/io/file-drop.d.ts +7 -0
- package/dist/io/file-drop.js +42 -0
- package/dist/io/index.d.ts +7 -0
- package/dist/io/index.js +6 -0
- package/dist/io/is-binary.d.ts +1 -0
- package/dist/io/is-binary.js +20 -0
- package/dist/io/types.d.ts +8 -0
- package/dist/io/types.js +1 -0
- package/dist/io/url-drop.d.ts +2 -0
- package/dist/io/url-drop.js +154 -0
- package/dist/isosurface/Isosurface.svelte +285 -0
- package/dist/isosurface/Isosurface.svelte.d.ts +8 -0
- package/dist/isosurface/IsosurfaceControls.svelte +277 -0
- package/dist/isosurface/IsosurfaceControls.svelte.d.ts +9 -0
- package/dist/isosurface/index.d.ts +5 -0
- package/dist/isosurface/index.js +6 -0
- package/dist/isosurface/parse.d.ts +6 -0
- package/dist/isosurface/parse.js +552 -0
- package/dist/isosurface/slice.d.ts +11 -0
- package/dist/isosurface/slice.js +141 -0
- package/dist/isosurface/types.d.ts +56 -0
- package/dist/isosurface/types.js +227 -0
- package/dist/keyboard.d.ts +3 -0
- package/dist/keyboard.js +23 -0
- package/dist/labels.d.ts +53 -0
- package/dist/labels.js +278 -0
- package/dist/layout/FullscreenToggle.svelte +50 -0
- package/dist/layout/FullscreenToggle.svelte.d.ts +7 -0
- package/dist/layout/InfoCard.svelte +120 -0
- package/dist/layout/InfoCard.svelte.d.ts +21 -0
- package/dist/layout/InfoTag.svelte +185 -0
- package/dist/layout/InfoTag.svelte.d.ts +19 -0
- package/dist/layout/PropertyFilter.svelte +247 -0
- package/dist/layout/PropertyFilter.svelte.d.ts +24 -0
- package/dist/layout/SettingsSection.svelte +148 -0
- package/dist/layout/SettingsSection.svelte.d.ts +17 -0
- package/dist/layout/SubpageGrid.svelte +82 -0
- package/dist/layout/SubpageGrid.svelte.d.ts +14 -0
- package/dist/layout/fullscreen.d.ts +9 -0
- package/dist/layout/fullscreen.js +53 -0
- package/dist/layout/index.d.ts +10 -0
- package/dist/layout/index.js +8 -0
- package/dist/layout/json-tree/JsonNode.svelte +548 -0
- package/dist/layout/json-tree/JsonNode.svelte.d.ts +11 -0
- package/dist/layout/json-tree/JsonTree.svelte +1230 -0
- package/dist/layout/json-tree/JsonTree.svelte.d.ts +6 -0
- package/dist/layout/json-tree/JsonValue.svelte.d.ts +9 -0
- package/dist/layout/json-tree/index.d.ts +3 -0
- package/dist/layout/json-tree/index.js +3 -0
- package/dist/layout/json-tree/types.d.ts +74 -0
- package/dist/layout/json-tree/types.js +2 -0
- package/dist/layout/json-tree/utils.d.ts +29 -0
- package/dist/layout/json-tree/utils.js +642 -0
- package/dist/marching-cubes.d.ts +14 -0
- package/dist/marching-cubes.js +535 -0
- package/dist/math.d.ts +105 -0
- package/dist/math.js +920 -0
- package/dist/overlays/ContextMenu.svelte +162 -0
- package/dist/overlays/ContextMenu.svelte.d.ts +25 -0
- package/dist/overlays/CopyButton.svelte +45 -0
- package/dist/overlays/CopyButton.svelte.d.ts +8 -0
- package/dist/overlays/DragControlTab.svelte +98 -0
- package/dist/overlays/DragControlTab.svelte.d.ts +8 -0
- package/dist/overlays/DraggablePane.svelte +487 -0
- package/dist/overlays/DraggablePane.svelte.d.ts +36 -0
- package/dist/overlays/InfoPaneCards.svelte +149 -0
- package/dist/overlays/InfoPaneCards.svelte.d.ts +22 -0
- package/dist/overlays/index.d.ts +3 -0
- package/dist/overlays/index.js +3 -0
- package/dist/periodic-table/PeriodicTable.svelte +480 -0
- package/dist/periodic-table/PeriodicTable.svelte.d.ts +55 -0
- package/dist/periodic-table/PeriodicTableControls.svelte +557 -0
- package/dist/periodic-table/PeriodicTableControls.svelte.d.ts +24 -0
- package/dist/periodic-table/PropertySelect.svelte +38 -0
- package/dist/periodic-table/PropertySelect.svelte.d.ts +13 -0
- package/dist/periodic-table/TableInset.svelte.d.ts +9 -0
- package/dist/periodic-table/index.d.ts +10 -0
- package/dist/periodic-table/index.js +4 -0
- package/dist/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +1092 -0
- package/dist/phase-diagram/IsobaricBinaryPhaseDiagram.svelte.d.ts +44 -0
- package/dist/phase-diagram/PhaseDiagramControls.svelte +444 -0
- package/dist/phase-diagram/PhaseDiagramControls.svelte.d.ts +30 -0
- package/dist/phase-diagram/PhaseDiagramEditorPane.svelte +127 -0
- package/dist/phase-diagram/PhaseDiagramEditorPane.svelte.d.ts +15 -0
- package/dist/phase-diagram/PhaseDiagramExportPane.svelte +184 -0
- package/dist/phase-diagram/PhaseDiagramExportPane.svelte.d.ts +19 -0
- package/dist/phase-diagram/PhaseDiagramTooltip.svelte +391 -0
- package/dist/phase-diagram/PhaseDiagramTooltip.svelte.d.ts +16 -0
- package/dist/phase-diagram/TdbInfoPanel.svelte +203 -0
- package/dist/phase-diagram/TdbInfoPanel.svelte.d.ts +12 -0
- package/dist/phase-diagram/build-diagram.d.ts +11 -0
- package/dist/phase-diagram/build-diagram.js +160 -0
- package/dist/phase-diagram/colors.d.ts +35 -0
- package/dist/phase-diagram/colors.js +51 -0
- package/dist/phase-diagram/diagram-input.d.ts +29 -0
- package/dist/phase-diagram/diagram-input.js +3 -0
- package/dist/phase-diagram/index.d.ts +13 -0
- package/dist/phase-diagram/index.js +11 -0
- package/dist/phase-diagram/parse.d.ts +55 -0
- package/dist/phase-diagram/parse.js +273 -0
- package/dist/phase-diagram/svg-to-diagram.d.ts +2 -0
- package/dist/phase-diagram/svg-to-diagram.js +867 -0
- package/dist/phase-diagram/types.d.ts +93 -0
- package/dist/phase-diagram/types.js +1 -0
- package/dist/phase-diagram/utils.d.ts +118 -0
- package/dist/phase-diagram/utils.js +600 -0
- package/dist/plot/bar/BarPlot.svelte +1755 -0
- package/dist/plot/bar/BarPlot.svelte.d.ts +84 -0
- package/dist/plot/bar/BarPlotControls.svelte +67 -0
- package/dist/plot/bar/BarPlotControls.svelte.d.ts +18 -0
- package/dist/plot/bar/SpacegroupBarPlot.svelte +293 -0
- package/dist/plot/bar/SpacegroupBarPlot.svelte.d.ts +9 -0
- package/dist/plot/bar/data.d.ts +40 -0
- package/dist/plot/bar/data.js +154 -0
- package/dist/plot/bar/geometry.d.ts +39 -0
- package/dist/plot/bar/geometry.js +60 -0
- package/dist/plot/bar/index.d.ts +3 -0
- package/dist/plot/bar/index.js +3 -0
- package/dist/plot/box/BoxPlot.svelte +1462 -0
- package/dist/plot/box/BoxPlot.svelte.d.ts +94 -0
- package/dist/plot/box/BoxPlotControls.svelte +109 -0
- package/dist/plot/box/BoxPlotControls.svelte.d.ts +19 -0
- package/dist/plot/box/Violin.svelte +14 -0
- package/dist/plot/box/Violin.svelte.d.ts +70 -0
- package/dist/plot/box/box-plot.d.ts +55 -0
- package/dist/plot/box/box-plot.js +126 -0
- package/dist/plot/box/index.d.ts +5 -0
- package/dist/plot/box/index.js +5 -0
- package/dist/plot/box/kde.d.ts +16 -0
- package/dist/plot/box/kde.js +160 -0
- package/dist/plot/box/quantile.d.ts +3 -0
- package/dist/plot/box/quantile.js +53 -0
- package/dist/plot/core/auto-place.d.ts +43 -0
- package/dist/plot/core/auto-place.js +122 -0
- package/dist/plot/core/axis-utils.d.ts +46 -0
- package/dist/plot/core/axis-utils.js +110 -0
- package/dist/plot/core/components/AxisLabel.svelte +51 -0
- package/dist/plot/core/components/AxisLabel.svelte.d.ts +16 -0
- package/dist/plot/core/components/ColorBar.svelte +724 -0
- package/dist/plot/core/components/ColorBar.svelte.d.ts +31 -0
- package/dist/plot/core/components/ColorScaleSelect.svelte +55 -0
- package/dist/plot/core/components/ColorScaleSelect.svelte.d.ts +15 -0
- package/dist/plot/core/components/ControlPane.svelte +46 -0
- package/dist/plot/core/components/ControlPane.svelte.d.ts +13 -0
- package/dist/plot/core/components/FillArea.svelte +234 -0
- package/dist/plot/core/components/FillArea.svelte.d.ts +21 -0
- package/dist/plot/core/components/InteractiveAxisLabel.svelte +96 -0
- package/dist/plot/core/components/InteractiveAxisLabel.svelte.d.ts +14 -0
- package/dist/plot/core/components/Line.svelte +101 -0
- package/dist/plot/core/components/Line.svelte.d.ts +15 -0
- package/dist/plot/core/components/PlotAxis.svelte +171 -0
- package/dist/plot/core/components/PlotAxis.svelte.d.ts +25 -0
- package/dist/plot/core/components/PlotControls.svelte +525 -0
- package/dist/plot/core/components/PlotControls.svelte.d.ts +4 -0
- package/dist/plot/core/components/PlotLegend.svelte +580 -0
- package/dist/plot/core/components/PlotLegend.svelte.d.ts +30 -0
- package/dist/plot/core/components/PlotTooltip.svelte +83 -0
- package/dist/plot/core/components/PlotTooltip.svelte.d.ts +25 -0
- package/dist/plot/core/components/PortalSelect.svelte +257 -0
- package/dist/plot/core/components/PortalSelect.svelte.d.ts +16 -0
- package/dist/plot/core/components/ReferenceLine.svelte +204 -0
- package/dist/plot/core/components/ReferenceLine.svelte.d.ts +20 -0
- package/dist/plot/core/components/ReferenceLine3D.svelte +156 -0
- package/dist/plot/core/components/ReferenceLine3D.svelte.d.ts +14 -0
- package/dist/plot/core/components/ReferencePlane.svelte +175 -0
- package/dist/plot/core/components/ReferencePlane.svelte.d.ts +14 -0
- package/dist/plot/core/components/ZeroLines.svelte +97 -0
- package/dist/plot/core/components/ZeroLines.svelte.d.ts +33 -0
- package/dist/plot/core/components/ZoomRect.svelte +23 -0
- package/dist/plot/core/components/ZoomRect.svelte.d.ts +8 -0
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- package/dist/src/lib/overlays/ContextMenu.svelte +0 -162
- package/dist/src/lib/overlays/CopyButton.svelte +0 -45
- package/dist/src/lib/overlays/DragControlTab.svelte +0 -98
- package/dist/src/lib/overlays/DraggablePane.svelte +0 -487
- package/dist/src/lib/overlays/InfoPaneCards.svelte +0 -149
- package/dist/src/lib/overlays/index.ts +0 -3
- package/dist/src/lib/periodic-table/PeriodicTable.svelte +0 -469
- package/dist/src/lib/periodic-table/PeriodicTableControls.svelte +0 -557
- package/dist/src/lib/periodic-table/PropertySelect.svelte +0 -37
- package/dist/src/lib/periodic-table/index.ts +0 -12
- package/dist/src/lib/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +0 -1086
- package/dist/src/lib/phase-diagram/PhaseDiagramControls.svelte +0 -444
- package/dist/src/lib/phase-diagram/PhaseDiagramEditorPane.svelte +0 -126
- package/dist/src/lib/phase-diagram/PhaseDiagramExportPane.svelte +0 -184
- package/dist/src/lib/phase-diagram/PhaseDiagramTooltip.svelte +0 -391
- package/dist/src/lib/phase-diagram/TdbInfoPanel.svelte +0 -203
- package/dist/src/lib/phase-diagram/build-diagram.ts +0 -186
- package/dist/src/lib/phase-diagram/colors.ts +0 -58
- package/dist/src/lib/phase-diagram/diagram-input.ts +0 -40
- package/dist/src/lib/phase-diagram/index.ts +0 -13
- package/dist/src/lib/phase-diagram/parse.ts +0 -348
- package/dist/src/lib/phase-diagram/svg-to-diagram.ts +0 -1023
- package/dist/src/lib/phase-diagram/types.ts +0 -144
- package/dist/src/lib/phase-diagram/utils.ts +0 -775
- package/dist/src/lib/plot/AxisLabel.svelte +0 -51
- package/dist/src/lib/plot/BarPlot.svelte +0 -2113
- package/dist/src/lib/plot/BarPlotControls.svelte +0 -66
- package/dist/src/lib/plot/BinnedScatterPlot.svelte +0 -1114
- package/dist/src/lib/plot/ColorBar.svelte +0 -721
- package/dist/src/lib/plot/ColorScaleSelect.svelte +0 -54
- package/dist/src/lib/plot/ElementScatter.svelte +0 -63
- package/dist/src/lib/plot/FillArea.svelte +0 -223
- package/dist/src/lib/plot/Histogram.svelte +0 -1558
- package/dist/src/lib/plot/HistogramControls.svelte +0 -212
- package/dist/src/lib/plot/InteractiveAxisLabel.svelte +0 -96
- package/dist/src/lib/plot/Line.svelte +0 -84
- package/dist/src/lib/plot/PlotAxis.svelte +0 -169
- package/dist/src/lib/plot/PlotControls.svelte +0 -537
- package/dist/src/lib/plot/PlotLegend.svelte +0 -569
- package/dist/src/lib/plot/PlotTooltip.svelte +0 -67
- package/dist/src/lib/plot/PortalSelect.svelte +0 -253
- package/dist/src/lib/plot/ReferenceLine.svelte +0 -204
- package/dist/src/lib/plot/ReferenceLine3D.svelte +0 -156
- package/dist/src/lib/plot/ReferencePlane.svelte +0 -175
- package/dist/src/lib/plot/ScatterPlot.svelte +0 -2778
- package/dist/src/lib/plot/ScatterPlot3D.svelte +0 -529
- package/dist/src/lib/plot/ScatterPlot3DControls.svelte +0 -437
- package/dist/src/lib/plot/ScatterPlot3DScene.svelte +0 -912
- package/dist/src/lib/plot/ScatterPlotControls.svelte +0 -306
- package/dist/src/lib/plot/ScatterPoint.svelte +0 -182
- package/dist/src/lib/plot/SpacegroupBarPlot.svelte +0 -293
- package/dist/src/lib/plot/Surface3D.svelte +0 -197
- package/dist/src/lib/plot/ZeroLines.svelte +0 -97
- package/dist/src/lib/plot/ZoomRect.svelte +0 -23
- package/dist/src/lib/plot/adaptive-density.ts +0 -316
- package/dist/src/lib/plot/auto-place.ts +0 -184
- package/dist/src/lib/plot/axis-utils.ts +0 -122
- package/dist/src/lib/plot/binned-scatter-types.ts +0 -83
- package/dist/src/lib/plot/data-cleaning.ts +0 -1069
- package/dist/src/lib/plot/data-transform.ts +0 -69
- package/dist/src/lib/plot/defaults.ts +0 -9
- package/dist/src/lib/plot/fill-utils.ts +0 -494
- package/dist/src/lib/plot/hover-lock.svelte.ts +0 -60
- package/dist/src/lib/plot/index.ts +0 -53
- package/dist/src/lib/plot/interactions.ts +0 -119
- package/dist/src/lib/plot/layout.ts +0 -425
- package/dist/src/lib/plot/reference-line.ts +0 -426
- package/dist/src/lib/plot/scales.ts +0 -654
- package/dist/src/lib/plot/svg.ts +0 -23
- package/dist/src/lib/plot/types.ts +0 -1144
- package/dist/src/lib/plot/utils/label-placement.ts +0 -541
- package/dist/src/lib/plot/utils/series-visibility.ts +0 -140
- package/dist/src/lib/plot/utils.ts +0 -11
- package/dist/src/lib/rdf/RdfPlot.svelte +0 -247
- package/dist/src/lib/rdf/calc-rdf.ts +0 -167
- package/dist/src/lib/rdf/index.ts +0 -27
- package/dist/src/lib/sanitize.ts +0 -126
- package/dist/src/lib/settings.ts +0 -1479
- package/dist/src/lib/spectral/Bands.svelte +0 -1040
- package/dist/src/lib/spectral/BandsAndDos.svelte +0 -134
- package/dist/src/lib/spectral/BrillouinBandsDos.svelte +0 -252
- package/dist/src/lib/spectral/Dos.svelte +0 -697
- package/dist/src/lib/spectral/helpers.ts +0 -1381
- package/dist/src/lib/spectral/index.ts +0 -8
- package/dist/src/lib/spectral/types.ts +0 -112
- package/dist/src/lib/state.svelte.ts +0 -64
- package/dist/src/lib/structure/Arrow.svelte +0 -72
- package/dist/src/lib/structure/AtomLegend.svelte +0 -815
- package/dist/src/lib/structure/Bond.svelte +0 -140
- package/dist/src/lib/structure/CanvasTooltip.svelte +0 -33
- package/dist/src/lib/structure/CellSelect.svelte +0 -349
- package/dist/src/lib/structure/Cylinder.svelte +0 -45
- package/dist/src/lib/structure/Lattice.svelte +0 -196
- package/dist/src/lib/structure/Structure.svelte +0 -2248
- package/dist/src/lib/structure/StructureControls.svelte +0 -1273
- package/dist/src/lib/structure/StructureExportPane.svelte +0 -252
- package/dist/src/lib/structure/StructureInfoPane.svelte +0 -737
- package/dist/src/lib/structure/StructureScene.svelte +0 -2255
- package/dist/src/lib/structure/atom-properties.ts +0 -316
- package/dist/src/lib/structure/bond-order-perception.ts +0 -447
- package/dist/src/lib/structure/bonding.ts +0 -944
- package/dist/src/lib/structure/export.ts +0 -861
- package/dist/src/lib/structure/index.ts +0 -291
- package/dist/src/lib/structure/label-placement.ts +0 -130
- package/dist/src/lib/structure/measure.ts +0 -45
- package/dist/src/lib/structure/parse.ts +0 -1705
- package/dist/src/lib/structure/partial-occupancy.ts +0 -183
- package/dist/src/lib/structure/pbc.ts +0 -164
- package/dist/src/lib/structure/supercell.ts +0 -226
- package/dist/src/lib/structure/validation.ts +0 -11
- package/dist/src/lib/symmetry/SymmetryStats.svelte +0 -226
- package/dist/src/lib/symmetry/WyckoffTable.svelte +0 -120
- package/dist/src/lib/symmetry/cell-transform.ts +0 -118
- package/dist/src/lib/symmetry/index.ts +0 -348
- package/dist/src/lib/symmetry/spacegroups.ts +0 -404
- package/dist/src/lib/table/HeatmapTable.svelte +0 -1833
- package/dist/src/lib/table/ToggleMenu.svelte +0 -385
- package/dist/src/lib/table/index.ts +0 -139
- package/dist/src/lib/theme/ThemeControl.svelte +0 -53
- package/dist/src/lib/theme/index.ts +0 -107
- package/dist/src/lib/time.ts +0 -71
- package/dist/src/lib/tooltip/TooltipContent.svelte +0 -58
- package/dist/src/lib/tooltip/index.ts +0 -2
- package/dist/src/lib/tooltip/types.ts +0 -13
- package/dist/src/lib/trajectory/Trajectory.svelte +0 -1545
- package/dist/src/lib/trajectory/TrajectoryError.svelte +0 -128
- package/dist/src/lib/trajectory/TrajectoryExportPane.svelte +0 -357
- package/dist/src/lib/trajectory/TrajectoryInfoPane.svelte +0 -313
- package/dist/src/lib/trajectory/constants.ts +0 -7
- package/dist/src/lib/trajectory/extract.ts +0 -196
- package/dist/src/lib/trajectory/format-detect.ts +0 -96
- package/dist/src/lib/trajectory/frame-reader.ts +0 -456
- package/dist/src/lib/trajectory/helpers.ts +0 -217
- package/dist/src/lib/trajectory/index.ts +0 -218
- package/dist/src/lib/trajectory/parse/ase.ts +0 -109
- package/dist/src/lib/trajectory/parse/hdf5.ts +0 -173
- package/dist/src/lib/trajectory/parse/index.ts +0 -411
- package/dist/src/lib/trajectory/parse/lammps.ts +0 -215
- package/dist/src/lib/trajectory/parse/vasp.ts +0 -102
- package/dist/src/lib/trajectory/parse/xyz.ts +0 -143
- package/dist/src/lib/trajectory/plotting.ts +0 -599
- package/dist/src/lib/trajectory/types.ts +0 -13
- package/dist/src/lib/utils.ts +0 -56
- package/dist/src/lib/xrd/XrdPlot.svelte +0 -615
- package/dist/src/lib/xrd/broadening.ts +0 -130
- package/dist/src/lib/xrd/calc-xrd.ts +0 -397
- package/dist/src/lib/xrd/index.ts +0 -38
- package/dist/src/lib/xrd/parse.ts +0 -858
- package/dist/webview.js +0 -29421
- package/icon.png +0 -0
- package/matterviz-0.3.2.vsix +0 -0
- package/matterviz-0.3.4.vsix +0 -0
- package/matterviz-0.3.5.vsix +0 -0
- package/scripts/sync-config.ts +0 -101
- package/src/declarations.d.ts +0 -2
- package/src/extension.ts +0 -972
- package/src/node-io.ts +0 -65
- package/src/types.ts +0 -17
- package/src/webview/JsonBrowser.svelte +0 -1079
- package/src/webview/PlotPanel.svelte +0 -346
- package/src/webview/detect.ts +0 -444
- package/src/webview/main.ts +0 -764
- package/src/webview/plot-utils.ts +0 -250
- package/test-fixtures/all-viz-types.json.gz +0 -0
- package/test-fixtures/plot-demo-data.json.gz +0 -0
- package/tests/detect.test.ts +0 -604
- package/tests/extension.test.ts +0 -2041
- package/tests/node-io.test.ts +0 -39
- package/tests/plot-utils.test.ts +0 -302
- package/tests/vite-plugin-json-gz.test.ts +0 -114
- package/tests/vscode-mock.ts +0 -18
- package/tests/webview.test.ts +0 -231
- package/tsconfig.json +0 -20
- package/vite-plugin-json-gz.ts +0 -29
- package/vite.config.ts +0 -34
- package/vite.extension.config.ts +0 -34
- /package/dist/{src/lib/EmptyState.svelte → EmptyState.svelte} +0 -0
- /package/dist/{src/lib/chempot-diagram → chempot-diagram}/ChemPotScene3D.svelte +0 -0
- /package/dist/{src/lib/colors → colors}/alloy-colors.json +0 -0
- /package/dist/{src/lib/colors → colors}/dark-mode-colors.json +0 -0
- /package/dist/{src/lib/colors → colors}/jmol-colors.json +0 -0
- /package/dist/{src/lib/colors → colors}/muted-colors.json +0 -0
- /package/dist/{src/lib/colors → colors}/pastel-colors.json +0 -0
- /package/dist/{src/lib/colors → colors}/vesta-colors.json +0 -0
- /package/dist/{src/lib/element → element}/BohrAtom.svelte +0 -0
- /package/dist/{src/lib/element → element}/Nucleus.svelte +0 -0
- /package/dist/{src/lib/element → element}/data.json +0 -0
- /package/dist/{src/lib/element → element}/data.json.gz +0 -0
- /package/dist/{src/lib/element → element}/data.json.gz.d.ts +0 -0
- /package/dist/{src/lib/element → element}/data.schema.json +0 -0
- /package/dist/{src/lib/element-image-urls.json → element-image-urls.json} +0 -0
- /package/dist/{src/lib/feedback → feedback}/Spinner.svelte +0 -0
- /package/dist/{src/lib/feedback → feedback}/StatusMessage.svelte +0 -0
- /package/dist/{src/lib/layout → layout}/json-tree/JsonValue.svelte +0 -0
- /package/dist/{src/lib/periodic-table → periodic-table}/TableInset.svelte +0 -0
- /package/dist/{src/lib/theme → theme}/themes.mjs +0 -0
- /package/dist/{src/lib/xrd → xrd}/atomic_scattering_params.json +0 -0
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import type { BandwidthOption, BasePlotProps, BoxHandlerProps, BoxPlotSeries, LegendConfig, Orientation, PanConfig, PlotConfig, RefLine, RefLineEvent, UserContentProps, ViolinKind, ViolinSide, WhiskerMode } from '..';
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bindings(): "orientation" | "display" | "show_controls" | "fullscreen" | "series" | "hovered" | "ref_lines" | "controls_open" | "x_axis" | "y_axis" | "whisker_mode" | "x2_axis" | "y2_axis" | "show_outliers" | "show_mean" | "kind" | "side";
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type BoxPlot<Metadata extends Record<string, unknown> = Record<string, unknown>> = InstanceType<typeof BoxPlot<Metadata>>;
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import type { Orientation, PlotConfig, ViolinKind, ViolinSide, WhiskerMode } from '..'
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let {
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orientation = $bindable(`vertical`),
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kind = $bindable(`box`),
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side = $bindable(`both`),
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x_axis = $bindable({}),
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y_axis = $bindable({}),
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display = $bindable({}),
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children,
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...rest
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}: Omit<PlotControlsProps, `children` | `post_children`> & {
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orientation?: Orientation
|
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whisker_mode?: WhiskerMode
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show_outliers?: boolean
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show_mean?: boolean
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kind?: ViolinKind
|
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side?: ViolinSide
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show_controls?: boolean
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controls_open?: boolean
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children?: Snippet<[{ orientation: Orientation } & Required<PlotConfig>]>
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} = $props()
|
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+
</script>
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+
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<PlotControls
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bind:show_controls
|
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bind:controls_open
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bind:x_axis
|
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+
bind:x2_axis
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bind:y_axis
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bind:y2_axis
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bind:display
|
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{...rest}
|
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>
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{@render children?.({ orientation, x_axis, x2_axis, y_axis, y2_axis, display })}
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<SettingsSection
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title="Box / Violin"
|
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current_values={{ orientation, kind, side, whisker_mode, show_outliers, show_mean }}
|
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on_reset={() => {
|
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orientation = `vertical`
|
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kind = DEFAULTS.box.kind
|
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side = DEFAULTS.box.side
|
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whisker_mode = DEFAULTS.box.whisker_mode
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show_outliers = DEFAULTS.box.show_outliers
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show_mean = DEFAULTS.box.show_mean
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}}
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style="display: flex; flex-wrap: wrap; gap: 2ex"
|
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+
>
|
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<label style="flex: 1">
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Orientation:
|
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<select bind:value={orientation} id="{uid}-orientation">
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<option value="vertical">Vertical</option>
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<option value="horizontal">Horizontal</option>
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</select>
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</label>
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<label style="flex: 1">
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Glyph:
|
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+
<select bind:value={kind} id="{uid}-kind">
|
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<option value="box">Box</option>
|
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<option value="violin">Violin</option>
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<option value="violin+box">Violin + Box</option>
|
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|
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</select>
|
|
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|
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</label>
|
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81
|
+
{#if kind !== `box`}
|
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|
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<label style="flex: 1">
|
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|
+
Violin side:
|
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84
|
+
<select bind:value={side} id="{uid}-side">
|
|
85
|
+
<option value="both">Both</option>
|
|
86
|
+
<option value="positive">Positive</option>
|
|
87
|
+
<option value="negative">Negative</option>
|
|
88
|
+
</select>
|
|
89
|
+
</label>
|
|
90
|
+
{/if}
|
|
91
|
+
<label style="flex: 1">
|
|
92
|
+
Whiskers:
|
|
93
|
+
<select bind:value={whisker_mode} id="{uid}-whisker-mode">
|
|
94
|
+
<option value="tukey">Tukey (1.5·IQR)</option>
|
|
95
|
+
<option value="minmax">Min/Max</option>
|
|
96
|
+
<option value="percentile">Percentile</option>
|
|
97
|
+
<option value="std">Std Dev</option>
|
|
98
|
+
</select>
|
|
99
|
+
</label>
|
|
100
|
+
<label style="flex: 1 1 100%">
|
|
101
|
+
<input type="checkbox" bind:checked={show_outliers} />
|
|
102
|
+
Show outliers
|
|
103
|
+
</label>
|
|
104
|
+
<label style="flex: 1 1 100%">
|
|
105
|
+
<input type="checkbox" bind:checked={show_mean} />
|
|
106
|
+
Show mean
|
|
107
|
+
</label>
|
|
108
|
+
</SettingsSection>
|
|
109
|
+
</PlotControls>
|
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
import type { Orientation, PlotConfig, ViolinKind, ViolinSide, WhiskerMode } from '..';
|
|
2
|
+
import type { PlotControlsProps } from '../core/types';
|
|
3
|
+
import type { Snippet } from 'svelte';
|
|
4
|
+
type $$ComponentProps = Omit<PlotControlsProps, `children` | `post_children`> & {
|
|
5
|
+
orientation?: Orientation;
|
|
6
|
+
whisker_mode?: WhiskerMode;
|
|
7
|
+
show_outliers?: boolean;
|
|
8
|
+
show_mean?: boolean;
|
|
9
|
+
kind?: ViolinKind;
|
|
10
|
+
side?: ViolinSide;
|
|
11
|
+
show_controls?: boolean;
|
|
12
|
+
controls_open?: boolean;
|
|
13
|
+
children?: Snippet<[{
|
|
14
|
+
orientation: Orientation;
|
|
15
|
+
} & Required<PlotConfig>]>;
|
|
16
|
+
};
|
|
17
|
+
declare const BoxPlotControls: import("svelte").Component<$$ComponentProps, {}, "orientation" | "display" | "show_controls" | "controls_open" | "x_axis" | "y_axis" | "whisker_mode" | "x2_axis" | "y2_axis" | "show_outliers" | "show_mean" | "kind" | "side">;
|
|
18
|
+
type BoxPlotControls = ReturnType<typeof BoxPlotControls>;
|
|
19
|
+
export default BoxPlotControls;
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
<script lang="ts">
|
|
2
|
+
// Thin wrapper around BoxPlot with violin defaults. A violin is the same chart as a box
|
|
3
|
+
// plot (per-series raw distribution on a categorical axis), so all the scaffolding is shared.
|
|
4
|
+
import type { ComponentProps } from 'svelte'
|
|
5
|
+
import BoxPlot from './BoxPlot.svelte'
|
|
6
|
+
|
|
7
|
+
let {
|
|
8
|
+
series = $bindable([]),
|
|
9
|
+
kind = $bindable(`violin`),
|
|
10
|
+
...rest
|
|
11
|
+
}: ComponentProps<typeof BoxPlot> = $props()
|
|
12
|
+
</script>
|
|
13
|
+
|
|
14
|
+
<BoxPlot bind:series bind:kind {...rest} />
|
|
@@ -0,0 +1,70 @@
|
|
|
1
|
+
declare const Violin: import("svelte").Component<import("svelte/elements").HTMLAttributes<HTMLDivElement> & import("..").BasePlotProps & import("..").PlotConfig & {
|
|
2
|
+
series?: import("./box-plot").BoxPlotSeries<Record<string, unknown>>[] | undefined;
|
|
3
|
+
orientation?: import("..").Orientation;
|
|
4
|
+
legend?: import("..").LegendConfig | null;
|
|
5
|
+
show_legend?: boolean;
|
|
6
|
+
box?: {
|
|
7
|
+
color?: string;
|
|
8
|
+
opacity?: number;
|
|
9
|
+
stroke_width?: number;
|
|
10
|
+
stroke_color?: string;
|
|
11
|
+
border_radius?: number;
|
|
12
|
+
} | undefined;
|
|
13
|
+
whisker?: {
|
|
14
|
+
width?: number;
|
|
15
|
+
color?: string;
|
|
16
|
+
cap_fraction?: number;
|
|
17
|
+
} | undefined;
|
|
18
|
+
median_style?: {
|
|
19
|
+
width?: number;
|
|
20
|
+
color?: string;
|
|
21
|
+
} | undefined;
|
|
22
|
+
outlier_style?: {
|
|
23
|
+
radius?: number;
|
|
24
|
+
opacity?: number;
|
|
25
|
+
stroke_width?: number;
|
|
26
|
+
} | undefined;
|
|
27
|
+
whisker_mode?: import("./box-plot").WhiskerMode;
|
|
28
|
+
whisker_range?: number;
|
|
29
|
+
whisker_percentiles?: [number, number];
|
|
30
|
+
show_outliers?: boolean;
|
|
31
|
+
show_mean?: boolean;
|
|
32
|
+
show_value_labels?: boolean;
|
|
33
|
+
value_label_stat?: `median` | `mean`;
|
|
34
|
+
value_label_format?: string;
|
|
35
|
+
kind?: import("./box-plot").ViolinKind;
|
|
36
|
+
side?: import("./box-plot").ViolinSide;
|
|
37
|
+
bandwidth?: import("./box-plot").BandwidthOption;
|
|
38
|
+
violin_width?: number;
|
|
39
|
+
violin_style?: {
|
|
40
|
+
opacity?: number;
|
|
41
|
+
stroke_width?: number;
|
|
42
|
+
} | undefined;
|
|
43
|
+
kde_points?: number;
|
|
44
|
+
kde_cut?: number;
|
|
45
|
+
kde_max_samples?: number;
|
|
46
|
+
kde_clip?: [number | null, number | null];
|
|
47
|
+
tooltip?: import("svelte").Snippet<[import("./box-plot").BoxHandlerProps<Record<string, unknown>>]> | undefined;
|
|
48
|
+
user_content?: import("svelte").Snippet<[import("..").UserContentProps]>;
|
|
49
|
+
header_controls?: import("svelte").Snippet<[{
|
|
50
|
+
height: number;
|
|
51
|
+
width: number;
|
|
52
|
+
fullscreen: boolean;
|
|
53
|
+
}]> | undefined;
|
|
54
|
+
controls_extra?: import("svelte").Snippet<[{
|
|
55
|
+
orientation: import("..").Orientation;
|
|
56
|
+
} & Required<import("..").PlotConfig>]> | undefined;
|
|
57
|
+
change?: ((data: import("./box-plot").BoxHandlerProps<Record<string, unknown>> | null) => void) | undefined;
|
|
58
|
+
on_box_click?: ((data: import("./box-plot").BoxHandlerProps<Record<string, unknown>> & {
|
|
59
|
+
event: MouseEvent | KeyboardEvent;
|
|
60
|
+
}) => void) | undefined;
|
|
61
|
+
on_box_hover?: ((data: (import("./box-plot").BoxHandlerProps<Record<string, unknown>> & {
|
|
62
|
+
event: MouseEvent | FocusEvent | KeyboardEvent;
|
|
63
|
+
}) | null) => void) | undefined;
|
|
64
|
+
ref_lines?: import("..").RefLine[];
|
|
65
|
+
on_ref_line_click?: ((event: import("..").RefLineEvent) => void) | undefined;
|
|
66
|
+
on_ref_line_hover?: ((event: import("..").RefLineEvent | null) => void) | undefined;
|
|
67
|
+
pan?: import("..").PanConfig;
|
|
68
|
+
}, {}, "series" | "kind">;
|
|
69
|
+
type Violin = ReturnType<typeof Violin>;
|
|
70
|
+
export default Violin;
|
|
@@ -0,0 +1,55 @@
|
|
|
1
|
+
import type { HandlerProps } from '../core/types';
|
|
2
|
+
export type WhiskerMode = `tukey` | `minmax` | `percentile` | `std`;
|
|
3
|
+
export type ViolinKind = `box` | `violin` | `violin+box`;
|
|
4
|
+
export type ViolinSide = `both` | `positive` | `negative`;
|
|
5
|
+
export type BandwidthOption = number | `silverman` | `scott`;
|
|
6
|
+
export interface BoxPlotSeries<Metadata = Record<string, unknown>> {
|
|
7
|
+
id?: string | number;
|
|
8
|
+
y: readonly number[];
|
|
9
|
+
label?: string;
|
|
10
|
+
color?: string;
|
|
11
|
+
box_width?: number;
|
|
12
|
+
visible?: boolean;
|
|
13
|
+
legend_group?: string;
|
|
14
|
+
metadata?: Metadata;
|
|
15
|
+
x_axis?: `x1` | `x2`;
|
|
16
|
+
y_axis?: `y1` | `y2`;
|
|
17
|
+
whisker_mode?: WhiskerMode;
|
|
18
|
+
whisker_range?: number;
|
|
19
|
+
whisker_percentiles?: [number, number];
|
|
20
|
+
kind?: ViolinKind;
|
|
21
|
+
side?: ViolinSide;
|
|
22
|
+
bandwidth?: BandwidthOption;
|
|
23
|
+
violin_width?: number;
|
|
24
|
+
clip?: [number | null, number | null];
|
|
25
|
+
category?: string;
|
|
26
|
+
}
|
|
27
|
+
export interface BoxHandlerProps<Metadata = Record<string, unknown>> extends HandlerProps<Metadata> {
|
|
28
|
+
box_idx: number;
|
|
29
|
+
stats: BoxStats;
|
|
30
|
+
color: string;
|
|
31
|
+
category_label?: string;
|
|
32
|
+
active_y_axis: `y1` | `y2`;
|
|
33
|
+
active_x_axis: `x1` | `x2`;
|
|
34
|
+
}
|
|
35
|
+
export interface BoxStats {
|
|
36
|
+
min: number;
|
|
37
|
+
max: number;
|
|
38
|
+
q1: number;
|
|
39
|
+
median: number;
|
|
40
|
+
q3: number;
|
|
41
|
+
mean: number;
|
|
42
|
+
whisker_low: number;
|
|
43
|
+
whisker_high: number;
|
|
44
|
+
outliers: number[];
|
|
45
|
+
n: number;
|
|
46
|
+
}
|
|
47
|
+
export interface BoxStatsOptions {
|
|
48
|
+
whisker_mode?: WhiskerMode;
|
|
49
|
+
whisker_range?: number;
|
|
50
|
+
whisker_percentiles?: [number, number];
|
|
51
|
+
collect_outliers?: boolean;
|
|
52
|
+
}
|
|
53
|
+
export declare const WHISKER_MODES: readonly ["tukey", "minmax", "percentile", "std"];
|
|
54
|
+
export declare const is_whisker_mode: (val: string) => val is WhiskerMode;
|
|
55
|
+
export declare function compute_box_stats(values: readonly number[], opts?: BoxStatsOptions): BoxStats;
|
|
@@ -0,0 +1,126 @@
|
|
|
1
|
+
// Box plot statistics: compute quartiles, whiskers and outliers from a raw distribution.
|
|
2
|
+
// Single source of truth for the quantile math used by BoxPlot.svelte.
|
|
3
|
+
import { ascending } from 'd3-array';
|
|
4
|
+
import { quantile_unordered } from './quantile';
|
|
5
|
+
export const WHISKER_MODES = [`tukey`, `minmax`, `percentile`, `std`];
|
|
6
|
+
const WHISKER_MODE_SET = new Set(WHISKER_MODES);
|
|
7
|
+
export const is_whisker_mode = (val) => WHISKER_MODE_SET.has(val);
|
|
8
|
+
const EMPTY_STATS = {
|
|
9
|
+
min: NaN,
|
|
10
|
+
max: NaN,
|
|
11
|
+
q1: NaN,
|
|
12
|
+
median: NaN,
|
|
13
|
+
q3: NaN,
|
|
14
|
+
mean: NaN,
|
|
15
|
+
whisker_low: NaN,
|
|
16
|
+
whisker_high: NaN,
|
|
17
|
+
outliers: [],
|
|
18
|
+
n: 0,
|
|
19
|
+
};
|
|
20
|
+
const clamp01 = (val) => Math.max(0, Math.min(1, val));
|
|
21
|
+
function collect_outliers_by_scan(values, low_bound, high_bound, collect) {
|
|
22
|
+
if (!collect)
|
|
23
|
+
return [];
|
|
24
|
+
const outliers = [];
|
|
25
|
+
for (const val of values)
|
|
26
|
+
if (val < low_bound || val > high_bound)
|
|
27
|
+
outliers.push(val);
|
|
28
|
+
outliers.sort(ascending);
|
|
29
|
+
return outliers;
|
|
30
|
+
}
|
|
31
|
+
function tukey_scan(values, low_bound, high_bound, collect, data_min, data_max) {
|
|
32
|
+
let whisker_low = Infinity;
|
|
33
|
+
let whisker_high = -Infinity;
|
|
34
|
+
const outliers = [];
|
|
35
|
+
for (const val of values) {
|
|
36
|
+
if (val < low_bound || val > high_bound) {
|
|
37
|
+
if (collect)
|
|
38
|
+
outliers.push(val);
|
|
39
|
+
}
|
|
40
|
+
else {
|
|
41
|
+
if (val < whisker_low)
|
|
42
|
+
whisker_low = val;
|
|
43
|
+
if (val > whisker_high)
|
|
44
|
+
whisker_high = val;
|
|
45
|
+
}
|
|
46
|
+
}
|
|
47
|
+
if (collect)
|
|
48
|
+
outliers.sort(ascending);
|
|
49
|
+
return {
|
|
50
|
+
whisker_low: whisker_low === Infinity ? data_min : whisker_low,
|
|
51
|
+
whisker_high: whisker_high === -Infinity ? data_max : whisker_high,
|
|
52
|
+
outliers,
|
|
53
|
+
};
|
|
54
|
+
}
|
|
55
|
+
// Compute box plot statistics for a raw numeric distribution.
|
|
56
|
+
// Quartiles use type-7 linear interpolation, matching d3/numpy/pandas defaults.
|
|
57
|
+
// Non-finite values are filtered out; the input array is never mutated.
|
|
58
|
+
export function compute_box_stats(values, opts = {}) {
|
|
59
|
+
const { whisker_mode = `tukey`, whisker_range = 1.5, whisker_percentiles = [5, 95], collect_outliers = true, } = opts;
|
|
60
|
+
const vals = values.filter((val) => Number.isFinite(val));
|
|
61
|
+
const n_vals = vals.length;
|
|
62
|
+
if (n_vals === 0)
|
|
63
|
+
return { ...EMPTY_STATS, outliers: [] };
|
|
64
|
+
let sum = 0;
|
|
65
|
+
let data_min = Infinity;
|
|
66
|
+
let data_max = -Infinity;
|
|
67
|
+
for (const val of vals) {
|
|
68
|
+
sum += val;
|
|
69
|
+
if (val < data_min)
|
|
70
|
+
data_min = val;
|
|
71
|
+
if (val > data_max)
|
|
72
|
+
data_max = val;
|
|
73
|
+
}
|
|
74
|
+
const mean = sum / n_vals;
|
|
75
|
+
const qtl = (p) => quantile_unordered(vals, p);
|
|
76
|
+
const collect_beyond = (lo, hi) => collect_outliers_by_scan(vals, lo, hi, collect_outliers);
|
|
77
|
+
const q1 = qtl(0.25);
|
|
78
|
+
const median = qtl(0.5);
|
|
79
|
+
const q3 = qtl(0.75);
|
|
80
|
+
let whisker_low;
|
|
81
|
+
let whisker_high;
|
|
82
|
+
let outliers = [];
|
|
83
|
+
if (whisker_mode === `minmax`) {
|
|
84
|
+
whisker_low = data_min;
|
|
85
|
+
whisker_high = data_max;
|
|
86
|
+
}
|
|
87
|
+
else if (whisker_mode === `percentile`) {
|
|
88
|
+
// Order-defensively so reversed input like [95, 5] still yields low <= high
|
|
89
|
+
const pct_low = Math.min(...whisker_percentiles);
|
|
90
|
+
const pct_high = Math.max(...whisker_percentiles);
|
|
91
|
+
whisker_low = qtl(clamp01(pct_low / 100));
|
|
92
|
+
whisker_high = qtl(clamp01(pct_high / 100));
|
|
93
|
+
outliers = collect_beyond(whisker_low, whisker_high);
|
|
94
|
+
}
|
|
95
|
+
else if (whisker_mode === `std`) {
|
|
96
|
+
let variance_sum = 0;
|
|
97
|
+
for (const val of vals) {
|
|
98
|
+
const delta = val - mean;
|
|
99
|
+
variance_sum += delta * delta;
|
|
100
|
+
}
|
|
101
|
+
const std = n_vals > 1 ? Math.sqrt(variance_sum / (n_vals - 1)) : 0;
|
|
102
|
+
const low_bound = mean - whisker_range * std;
|
|
103
|
+
const high_bound = mean + whisker_range * std;
|
|
104
|
+
// Clamp whisker ends to the data extent so they never extend past real values
|
|
105
|
+
whisker_low = Math.max(data_min, low_bound);
|
|
106
|
+
whisker_high = Math.min(data_max, high_bound);
|
|
107
|
+
outliers = collect_beyond(low_bound, high_bound);
|
|
108
|
+
}
|
|
109
|
+
else {
|
|
110
|
+
// tukey (default): whiskers extend to the most extreme datum within range*IQR of the quartiles
|
|
111
|
+
const iqr = q3 - q1;
|
|
112
|
+
({ whisker_low, whisker_high, outliers } = tukey_scan(vals, q1 - whisker_range * iqr, q3 + whisker_range * iqr, collect_outliers, data_min, data_max));
|
|
113
|
+
}
|
|
114
|
+
return {
|
|
115
|
+
min: data_min,
|
|
116
|
+
max: data_max,
|
|
117
|
+
q1,
|
|
118
|
+
median,
|
|
119
|
+
q3,
|
|
120
|
+
mean,
|
|
121
|
+
whisker_low,
|
|
122
|
+
whisker_high,
|
|
123
|
+
outliers,
|
|
124
|
+
n: n_vals,
|
|
125
|
+
};
|
|
126
|
+
}
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
export interface KdeResult {
|
|
2
|
+
grid: number[];
|
|
3
|
+
density: number[];
|
|
4
|
+
bandwidth: number;
|
|
5
|
+
}
|
|
6
|
+
export interface KdeOptions {
|
|
7
|
+
bandwidth?: number | `silverman` | `scott`;
|
|
8
|
+
n_points?: number;
|
|
9
|
+
cut?: number;
|
|
10
|
+
clip?: [number | null, number | null];
|
|
11
|
+
range?: [number, number];
|
|
12
|
+
max_samples?: number;
|
|
13
|
+
}
|
|
14
|
+
export declare function silverman_bandwidth(sorted: readonly number[]): number;
|
|
15
|
+
export declare function scott_bandwidth(samples: readonly number[]): number;
|
|
16
|
+
export declare function gaussian_kde(samples: readonly number[], opts?: KdeOptions): KdeResult;
|
|
@@ -0,0 +1,160 @@
|
|
|
1
|
+
// 1-D Gaussian kernel density estimation for violin plots.
|
|
2
|
+
// Pure and unit-tested; mirrors the style of box-plot.ts. Never mutates inputs.
|
|
3
|
+
import { quantile_sorted, quantile_unordered } from './quantile';
|
|
4
|
+
const KDE_EXACT_SAMPLE_LIMIT = 1024;
|
|
5
|
+
const KDE_TAIL_SIGMA = 6;
|
|
6
|
+
function sample_deviation(sorted) {
|
|
7
|
+
const n_vals = sorted.length;
|
|
8
|
+
if (n_vals < 2)
|
|
9
|
+
return 0;
|
|
10
|
+
let sum = 0;
|
|
11
|
+
for (const val of sorted)
|
|
12
|
+
sum += val;
|
|
13
|
+
const mean = sum / n_vals;
|
|
14
|
+
let variance_sum = 0;
|
|
15
|
+
for (const val of sorted) {
|
|
16
|
+
const delta = val - mean;
|
|
17
|
+
variance_sum += delta * delta;
|
|
18
|
+
}
|
|
19
|
+
return Math.sqrt(variance_sum / (n_vals - 1));
|
|
20
|
+
}
|
|
21
|
+
// Silverman's rule of thumb: 0.9 * min(std, IQR/1.34) * n^(-1/5). Matches scipy/seaborn.
|
|
22
|
+
// (`sigma` floors to std then 1 to avoid a zero bandwidth.)
|
|
23
|
+
const silverman_from_stats = (n_vals, std, iqr) => {
|
|
24
|
+
const spread = iqr > 0 ? Math.min(std, iqr / 1.34) : std;
|
|
25
|
+
const sigma = spread > 0 ? spread : std > 0 ? std : 1;
|
|
26
|
+
return 0.9 * sigma * n_vals ** (-1 / 5);
|
|
27
|
+
};
|
|
28
|
+
export function silverman_bandwidth(sorted) {
|
|
29
|
+
if (sorted.length < 2)
|
|
30
|
+
return 1;
|
|
31
|
+
const iqr = quantile_sorted(sorted, 0.75) - quantile_sorted(sorted, 0.25);
|
|
32
|
+
return silverman_from_stats(sorted.length, sample_deviation(sorted), iqr);
|
|
33
|
+
}
|
|
34
|
+
function silverman_bandwidth_unordered(samples) {
|
|
35
|
+
if (samples.length < 2)
|
|
36
|
+
return 1;
|
|
37
|
+
const q1 = quantile_unordered(samples, 0.25);
|
|
38
|
+
const q3 = quantile_unordered(samples, 0.75);
|
|
39
|
+
return silverman_from_stats(samples.length, sample_deviation(samples), q3 - q1);
|
|
40
|
+
}
|
|
41
|
+
// Scott's rule: std * n^(-1/5) for 1-D data.
|
|
42
|
+
// `samples` need not be sorted (only uses sample_deviation, unlike silverman_bandwidth)
|
|
43
|
+
export function scott_bandwidth(samples) {
|
|
44
|
+
const n_vals = samples.length;
|
|
45
|
+
if (n_vals < 2)
|
|
46
|
+
return 1;
|
|
47
|
+
const std = sample_deviation(samples) || 1;
|
|
48
|
+
return std * n_vals ** (-1 / 5);
|
|
49
|
+
}
|
|
50
|
+
function exact_density(eval_samples, grid, band) {
|
|
51
|
+
const n_eval = eval_samples.length;
|
|
52
|
+
const norm = 1 / (n_eval * band * Math.sqrt(2 * Math.PI));
|
|
53
|
+
const density = Array.from({ length: grid.length }, () => 0);
|
|
54
|
+
for (let grid_idx = 0; grid_idx < grid.length; grid_idx++) {
|
|
55
|
+
const g_val = grid[grid_idx];
|
|
56
|
+
let sum = 0;
|
|
57
|
+
for (const sample of eval_samples) {
|
|
58
|
+
const u = (g_val - sample) / band;
|
|
59
|
+
sum += Math.exp(-0.5 * u * u);
|
|
60
|
+
}
|
|
61
|
+
density[grid_idx] = sum * norm;
|
|
62
|
+
}
|
|
63
|
+
return density;
|
|
64
|
+
}
|
|
65
|
+
function binned_density(eval_samples, grid, band) {
|
|
66
|
+
const n_eval = eval_samples.length;
|
|
67
|
+
let sample_min = Infinity;
|
|
68
|
+
let sample_max = -Infinity;
|
|
69
|
+
for (const sample of eval_samples) {
|
|
70
|
+
if (sample < sample_min)
|
|
71
|
+
sample_min = sample;
|
|
72
|
+
if (sample > sample_max)
|
|
73
|
+
sample_max = sample;
|
|
74
|
+
}
|
|
75
|
+
if (sample_max <= sample_min)
|
|
76
|
+
return exact_density(eval_samples, grid, band);
|
|
77
|
+
const bin_count = Math.min(1024, Math.max(128, grid.length * 4));
|
|
78
|
+
const counts = new Float64Array(bin_count);
|
|
79
|
+
const span = sample_max - sample_min;
|
|
80
|
+
const inv_bin_width = bin_count / span;
|
|
81
|
+
for (const sample of eval_samples) {
|
|
82
|
+
const idx = Math.min(bin_count - 1, Math.floor((sample - sample_min) * inv_bin_width));
|
|
83
|
+
counts[idx] += 1;
|
|
84
|
+
}
|
|
85
|
+
const centers = new Float64Array(bin_count);
|
|
86
|
+
const bin_width = span / bin_count;
|
|
87
|
+
for (let idx = 0; idx < bin_count; idx++)
|
|
88
|
+
centers[idx] = sample_min + (idx + 0.5) * bin_width;
|
|
89
|
+
const density = Array.from({ length: grid.length }, () => 0);
|
|
90
|
+
const norm = 1 / (n_eval * band * Math.sqrt(2 * Math.PI));
|
|
91
|
+
const radius = KDE_TAIL_SIGMA * band;
|
|
92
|
+
for (let grid_idx = 0; grid_idx < grid.length; grid_idx++) {
|
|
93
|
+
const g_val = grid[grid_idx];
|
|
94
|
+
const start = Math.max(0, Math.floor((g_val - radius - sample_min) * inv_bin_width));
|
|
95
|
+
const stop = Math.min(bin_count - 1, Math.floor((g_val + radius - sample_min) * inv_bin_width));
|
|
96
|
+
let sum = 0;
|
|
97
|
+
for (let bin_idx = start; bin_idx <= stop; bin_idx++) {
|
|
98
|
+
const count = counts[bin_idx];
|
|
99
|
+
if (count === 0)
|
|
100
|
+
continue;
|
|
101
|
+
const u = (g_val - centers[bin_idx]) / band;
|
|
102
|
+
sum += count * Math.exp(-0.5 * u * u);
|
|
103
|
+
}
|
|
104
|
+
density[grid_idx] = sum * norm;
|
|
105
|
+
}
|
|
106
|
+
return density;
|
|
107
|
+
}
|
|
108
|
+
// Estimate a smooth density from raw samples via a Gaussian kernel.
|
|
109
|
+
export function gaussian_kde(samples, opts = {}) {
|
|
110
|
+
const { bandwidth = `silverman`, n_points = 100, cut = 2, clip, range, max_samples } = opts;
|
|
111
|
+
const finite = samples.filter((val) => Number.isFinite(val));
|
|
112
|
+
const n_vals = finite.length;
|
|
113
|
+
if (n_vals === 0)
|
|
114
|
+
return { grid: [], density: [], bandwidth: 0 };
|
|
115
|
+
let data_min = Infinity;
|
|
116
|
+
let data_max = -Infinity;
|
|
117
|
+
for (const sample of finite) {
|
|
118
|
+
if (sample < data_min)
|
|
119
|
+
data_min = sample;
|
|
120
|
+
if (sample > data_max)
|
|
121
|
+
data_max = sample;
|
|
122
|
+
}
|
|
123
|
+
// Deterministic stride subsample for the density sum on large inputs.
|
|
124
|
+
// Do this before unordered quantile selection mutates `finite`.
|
|
125
|
+
let eval_samples = finite;
|
|
126
|
+
if (max_samples && n_vals > max_samples) {
|
|
127
|
+
const step = n_vals / max_samples;
|
|
128
|
+
const sampled = Array.from({ length: max_samples }, () => 0);
|
|
129
|
+
for (let idx = 0; idx < max_samples; idx++)
|
|
130
|
+
sampled[idx] = finite[Math.floor(idx * step)];
|
|
131
|
+
eval_samples = sampled;
|
|
132
|
+
}
|
|
133
|
+
let band = typeof bandwidth === `number`
|
|
134
|
+
? bandwidth
|
|
135
|
+
: bandwidth === `scott`
|
|
136
|
+
? scott_bandwidth(finite)
|
|
137
|
+
: silverman_bandwidth_unordered(finite);
|
|
138
|
+
band = Math.max(band, 1e-12); // guard against zero/negative bandwidth
|
|
139
|
+
const n_eval = eval_samples.length;
|
|
140
|
+
let lo = range ? range[0] : data_min - cut * band;
|
|
141
|
+
let hi = range ? range[1] : data_max + cut * band;
|
|
142
|
+
if (clip) {
|
|
143
|
+
if (clip[0] != null)
|
|
144
|
+
lo = Math.max(lo, clip[0]);
|
|
145
|
+
if (clip[1] != null)
|
|
146
|
+
hi = Math.min(hi, clip[1]);
|
|
147
|
+
}
|
|
148
|
+
// An inverted/collapsed range (e.g. clip [10, 5], or a clip bound outside the data) leaves
|
|
149
|
+
// no valid grid -> degrade to an empty density rather than a corrupted descending grid.
|
|
150
|
+
if (hi <= lo)
|
|
151
|
+
return { grid: [], density: [], bandwidth: band };
|
|
152
|
+
const points = Math.max(2, Math.floor(n_points));
|
|
153
|
+
const grid = Array.from({ length: points }, () => 0);
|
|
154
|
+
for (let idx = 0; idx < points; idx++)
|
|
155
|
+
grid[idx] = lo + ((hi - lo) * idx) / (points - 1);
|
|
156
|
+
const density = max_samples && n_eval > KDE_EXACT_SAMPLE_LIMIT
|
|
157
|
+
? binned_density(eval_samples, grid, band)
|
|
158
|
+
: exact_density(eval_samples, grid, band);
|
|
159
|
+
return { grid, density, bandwidth: band };
|
|
160
|
+
}
|