mandrel 1.94.0 → 2.0.0

package/.agents/scripts/lib/baseline-snapshot.js

@@ -1,979 +0,0 @@
-import { spawnSync as defaultSpawnSync } from 'node:child_process';
-import fs from 'node:fs';
-import os from 'node:os';
-import path from 'node:path';
-import { filterExcludedRows } from './baselines/kinds/maintainability.js';
-import { canonicalise as canonicalisePath } from './baselines/path-canon.js';
-import { loadFile as readerLoadFile } from './baselines/reader.js';
-import {
-  write as defaultWriteBaseline,
-  writeFile as defaultWriteBaselineFile,
-} from './baselines/writer.js';
-import {
-  getBaselines as defaultGetBaselines,
-  getQuality as defaultGetQuality,
-  resolveConfig as defaultResolveConfig,
-  PROJECT_ROOT,
-} from './config-resolver.js';
-import { loadCoverage } from './coverage-utils.js';
-import {
-  resolveEscomplexVersion,
-  resolveTsTranspilerVersion,
-  scanAndScore,
-  scanAndScoreCombined,
-} from './crap-utils.js';
-import { ensureEpicBranchRef as defaultEnsureEpicBranchRef } from './git-branch-lifecycle.js';
-import { calculateAll, scanDirectory } from './maintainability-utils.js';
-
-/**
- * baseline-snapshot.js — per-Epic baseline lifecycle helpers.
- *
- * Story #1396 (Epic #1386). The Epic-snapshot scheme freezes the maintainability
- * and crap baselines at /plan time and reconciles them back to `main`
- * at /deliver time. Two helpers, both pure-ish (deterministic given the
- * working tree + injected I/O):
- *
- *   - forkMainToEpic({ epicId, cwd }) — copies the tracked main baselines
- *     under `temp/epic-<id>/baselines/`. Idempotent: re-running with the same
- *     source content produces the same destination bytes (no fs churn). When
- *     the source baseline is missing, emits a warn through the injected
- *     logger and returns `{ written: false, reason: 'source-missing' }` for
- *     that file — callers (e.g. /plan Phase 7) treat the absence as
- *     non-fatal and stay in `--full-scope` mode.
- *
- *   - regenerateMainFromTree({ cwd }) — re-scores maintainability + crap
- *     against the current working tree and writes the result to the tracked
- *     main baseline paths. Returns `{ didChange, paths }` where `didChange`
- *     is true iff any baseline file's content differs from what's already on
- *     disk. Callers in /deliver use `didChange === false` to skip the
- *     `baseline-refresh: epic-<id>` commit.
- *
- * Lifecycle note (Story #1467): per-epic ratchet snapshots are ephemeral
- * scratch state under the `temp/epic-<id>/baselines/` namespace, NOT committed
- * artifacts. They inherit the existing per-epic temp-tree cleanup contract —
- * `/deliver` reaps the parent `temp/epic-<id>/` directory on merge, so
- * no manual prune is required. Earlier versions of this module wrote under
- * `baselines/epic/<id>/`, which committed them to git and accumulated obsolete
- * snapshots forever.
- *
- * Why "pure-ish" and not pure: both helpers read+write the filesystem and
- * (for regenerateMainFromTree) walk source trees + parse coverage. The seam
- * exposes the pieces that matter for tests — `fs`, the config accessors,
- * the scoring helpers — through dependency injection so the unit tests can
- * pin behaviour without ever touching real `baselines/*.json`.
- */
-
-const EPIC_BASELINES = ['maintainability', 'crap'];
-
-/**
- * Resolve the per-Epic snapshot path for a baseline kind.
- *
- * @param {{ epicId: number, kind: 'maintainability'|'crap', cwd?: string }} opts
- * @returns {string} absolute path under `<cwd>/temp/epic-<id>/baselines/<kind>.json`
- */
-export function epicSnapshotPathFor({ epicId, kind, cwd = process.cwd() }) {
-  if (!Number.isInteger(epicId) || epicId <= 0) {
-    throw new TypeError(
-      '[baseline-snapshot] epicId must be a positive integer',
-    );
-  }
-  if (kind !== 'maintainability' && kind !== 'crap') {
-    throw new TypeError(
-      `[baseline-snapshot] kind must be one of ${EPIC_BASELINES.join(', ')}`,
-    );
-  }
-  return path.resolve(
-    cwd,
-    'temp',
-    `epic-${epicId}`,
-    'baselines',
-    `${kind}.json`,
-  );
-}
-
-/**
- * Fork the tracked main baselines into `temp/epic-<id>/baselines/`. Idempotent.
- *
- * Source paths are resolved through the agent-settings config so a repo that
- * relocates its baselines (`delivery.quality.gates.{maintainability,crap}.baselinePath`)
- * is honoured. Destination layout is fixed at `temp/epic-<id>/baselines/<kind>.json`
- * so the close-validation gate's `--epic-ref` resolution stays predictable, and
- * the per-epic temp-tree cleanup reaps them on Story merge with no extra wiring.
- *
- * Failure modes:
- *   - Source baseline missing → returned per-file `{ written: false,
- *     reason: 'source-missing' }`. Logger warn fires once per missing file.
- *     Caller stays in `--full-scope` mode.
- *   - Source unreadable / not parseable → throws. Re-running /plan
- *     with `--force` after fixing the source recovers.
- *
- * @param {{
- *   epicId: number,
- *   cwd?: string,
- *   force?: boolean,                            // unused at this layer; reserved
- *   resolveConfig?: typeof defaultResolveConfig,
- *   getBaselines?: typeof defaultGetBaselines,
- *   logger?: { warn?: (m: string) => void, info?: (m: string) => void },
- *   fsImpl?: { existsSync: typeof fs.existsSync, readFileSync: typeof fs.readFileSync, writeFileSync: typeof fs.writeFileSync, mkdirSync: typeof fs.mkdirSync },
- * }} opts
- * @returns {{
- *   epicId: number,
- *   results: Array<{
- *     kind: 'maintainability'|'crap',
- *     source: string,
- *     destination: string,
- *     written: boolean,
- *     reason?: 'source-missing'|'idempotent'|'fresh',
- *   }>,
- * }}
- */
-export function forkMainToEpic({
-  epicId,
-  cwd = process.cwd(),
-  resolveConfig = defaultResolveConfig,
-  getBaselines = defaultGetBaselines,
-  logger = console,
-  fsImpl = fs,
-} = {}) {
-  if (!Number.isInteger(epicId) || epicId <= 0) {
-    throw new TypeError(
-      '[baseline-snapshot] forkMainToEpic: epicId must be a positive integer',
-    );
-  }
-
-  const config = resolveConfig({ cwd });
-  const baselines = getBaselines(config);
-  const results = [];
-
-  for (const kind of EPIC_BASELINES) {
-    const sourceRel = baselines?.[kind]?.path;
-    if (typeof sourceRel !== 'string' || sourceRel.length === 0) {
-      logger.warn?.(
-        `[baseline-snapshot] no configured path for ${kind} baseline — skipping fork.`,
-      );
-      results.push({
-        kind,
-        source: '',
-        destination: epicSnapshotPathFor({ epicId, kind, cwd }),
-        written: false,
-        reason: 'source-missing',
-      });
-      continue;
-    }
-
-    const sourceAbs = path.isAbsolute(sourceRel)
-      ? sourceRel
-      : path.resolve(cwd, sourceRel);
-    const destinationAbs = epicSnapshotPathFor({ epicId, kind, cwd });
-
-    if (!fsImpl.existsSync(sourceAbs)) {
-      logger.warn?.(
-        `[baseline-snapshot] ⚠ source baseline missing for ${kind} at ${sourceRel} — fork skipped (gate stays in --full-scope mode).`,
-      );
-      results.push({
-        kind,
-        source: sourceAbs,
-        destination: destinationAbs,
-        written: false,
-        reason: 'source-missing',
-      });
-      continue;
-    }
-
-    const sourceBytes = fsImpl.readFileSync(sourceAbs, 'utf8');
-
-    let existingBytes = null;
-    if (fsImpl.existsSync(destinationAbs)) {
-      try {
-        existingBytes = fsImpl.readFileSync(destinationAbs, 'utf8');
-      } catch {
-        existingBytes = null;
-      }
-    }
-
-    if (existingBytes === sourceBytes) {
-      results.push({
-        kind,
-        source: sourceAbs,
-        destination: destinationAbs,
-        written: false,
-        reason: 'idempotent',
-      });
-      continue;
-    }
-
-    fsImpl.mkdirSync(path.dirname(destinationAbs), { recursive: true });
-    fsImpl.writeFileSync(destinationAbs, sourceBytes);
-    logger.info?.(
-      `[baseline-snapshot] forked ${kind} baseline → ${path.relative(cwd, destinationAbs)}`,
-    );
-    results.push({
-      kind,
-      source: sourceAbs,
-      destination: destinationAbs,
-      written: true,
-      reason: 'fresh',
-    });
-  }
-
-  return { epicId, results };
-}
-
-/**
- * Author a single planning commit on `epic/<id>` that adds the per-Epic
- * baseline snapshots, without disturbing the live working tree or HEAD.
- *
- * Implementation strategy: build a fresh, isolated git index seeded from the
- * Epic branch's tree (`read-tree`), `update-index --add` the snapshot blobs
- * (sourced via `hash-object -w`), `write-tree` against that index, and
- * `commit-tree` the result with the Epic branch as parent. The commit is
- * then attached via `update-ref refs/heads/epic/<id>`. The live worktree
- * `.git/index` is never touched — we route every git invocation through a
- * temporary `GIT_INDEX_FILE`.
- *
- * Idempotent: when the resulting tree equals the parent's tree (because the
- * blobs were already on the Epic branch), no commit is made and the helper
- * returns `{ committed: false, reason: 'no-change' }`.
- *
- * Pre-conditions:
- *   - `epic/<id>` ref exists (caller has invoked `ensureEpicBranchRef`).
- *   - The destination snapshot files exist on disk (call `forkMainToEpic`
- *     immediately before this helper).
- *
- * @param {{
- *   epicId: number,
- *   cwd?: string,
- *   epicBranch?: string,
- *   message?: string,
- *   files?: Array<{ destination: string }>,    // accepts forkMainToEpic results
- *   gitSpawn?: typeof defaultGitSpawn,
- *   logger?: { info?: (m: string) => void, warn?: (m: string) => void },
- * }} opts
- * @returns {{ committed: boolean, sha?: string, reason?: 'no-change'|'no-files'|'epic-missing', detail?: string }}
- */
-export function commitSnapshotsToEpicBranch({
-  epicId,
-  cwd = process.cwd(),
-  epicBranch = `epic/${epicId}`,
-  message = `chore(baseline-snapshot): seed per-epic snapshots for epic-${epicId}`,
-  files = [],
-  spawnSync = defaultSpawnSync,
-  fsImpl = fs,
-  logger = console,
-} = {}) {
-  if (!Number.isInteger(epicId) || epicId <= 0) {
-    throw new TypeError(
-      '[baseline-snapshot] commitSnapshotsToEpicBranch: epicId must be a positive integer',
-    );
-  }
-
-  // Filter to files that actually exist on disk and are under cwd. The helper
-  // is purely additive — it never deletes — so files: [] short-circuits.
-  const targets = files
-    .filter((f) => f && typeof f.destination === 'string')
-    .filter((f) => fsImpl.existsSync(f.destination))
-    .map((f) => ({
-      abs: f.destination,
-      rel: path.relative(cwd, f.destination).split(path.sep).join('/'),
-    }));
-  if (targets.length === 0) {
-    return { committed: false, reason: 'no-files' };
-  }
-
-  function runGit(args, extraEnv = {}) {
-    const result = spawnSync('git', args, {
-      cwd,
-      encoding: 'utf-8',
-      stdio: 'pipe',
-      shell: false,
-      env: { ...process.env, ...extraEnv },
-    });
-    return {
-      status: result.status ?? 1,
-      stdout: (result.stdout ?? '').trim(),
-      stderr: (result.stderr ?? '').trim(),
-    };
-  }
-
-  // Verify the epic branch ref exists before doing any plumbing work.
-  const verify = runGit(['rev-parse', '--verify', epicBranch]);
-  if (verify.status !== 0) {
-    return {
-      committed: false,
-      reason: 'epic-missing',
-      detail: `epic branch ref ${epicBranch} does not exist`,
-    };
-  }
-  const parentSha = verify.stdout;
-
-  // Allocate an isolated index file so the live `.git/index` never moves.
-  const tmpIndex = path.join(
-    os.tmpdir(),
-    `baseline-snapshot-${epicId}-${process.pid}-${Date.now()}.index`,
-  );
-  const env = { GIT_INDEX_FILE: tmpIndex };
-
-  try {
-    // Seed the index from the Epic branch tree.
-    const readTree = runGit(['read-tree', epicBranch], env);
-    if (readTree.status !== 0) {
-      return {
-        committed: false,
-        reason: 'epic-missing',
-        detail: `read-tree failed: ${readTree.stderr || readTree.stdout}`,
-      };
-    }
-
-    // Hash each blob (writing it to the object DB) and stage it in the
-    // temp index.
-    for (const t of targets) {
-      const hashRes = runGit(['hash-object', '-w', '--', t.abs]);
-      if (hashRes.status !== 0) {
-        throw new Error(
-          `[baseline-snapshot] hash-object failed for ${t.rel}: ${hashRes.stderr}`,
-        );
-      }
-      const blobSha = hashRes.stdout;
-      const updateIdx = runGit(
-        ['update-index', '--add', '--cacheinfo', `100644,${blobSha},${t.rel}`],
-        env,
-      );
-      if (updateIdx.status !== 0) {
-        throw new Error(
-          `[baseline-snapshot] update-index failed for ${t.rel}: ${updateIdx.stderr}`,
-        );
-      }
-    }
-
-    // Write the staged tree.
-    const writeTree = runGit(['write-tree'], env);
-    if (writeTree.status !== 0) {
-      throw new Error(
-        `[baseline-snapshot] write-tree failed: ${writeTree.stderr}`,
-      );
-    }
-    const newTreeSha = writeTree.stdout;
-
-    // Compare against the parent tree — skip the commit when nothing moved.
-    const parentTreeRes = runGit(['rev-parse', `${parentSha}^{tree}`]);
-    if (parentTreeRes.status === 0 && parentTreeRes.stdout === newTreeSha) {
-      return { committed: false, reason: 'no-change' };
-    }
-
-    // Author the commit and attach it to the Epic branch ref.
-    const commitRes = runGit([
-      'commit-tree',
-      newTreeSha,
-      '-p',
-      parentSha,
-      '-m',
-      message,
-    ]);
-    if (commitRes.status !== 0) {
-      throw new Error(
-        `[baseline-snapshot] commit-tree failed: ${commitRes.stderr}`,
-      );
-    }
-    const newCommitSha = commitRes.stdout;
-
-    const updateRef = runGit([
-      'update-ref',
-      `refs/heads/${epicBranch}`,
-      newCommitSha,
-      parentSha,
-    ]);
-    if (updateRef.status !== 0) {
-      throw new Error(
-        `[baseline-snapshot] update-ref failed: ${updateRef.stderr}`,
-      );
-    }
-
-    logger.info?.(
-      `[baseline-snapshot] committed ${targets.length} snapshot file(s) to ${epicBranch} (${newCommitSha.slice(0, 7)}).`,
-    );
-    return { committed: true, sha: newCommitSha };
-  } finally {
-    // Best-effort cleanup of the temp index file.
-    try {
-      if (fsImpl.existsSync(tmpIndex)) fsImpl.unlinkSync(tmpIndex);
-    } catch {
-      // ignore — temp file in OS tmpdir, not our problem long-term
-    }
-  }
-}
-
-/**
- * Re-score the main baselines from the current working tree and write the
- * result back to the tracked baseline paths.
- *
- * Story #2135 / Task #2145 — rewritten to route every write through the
- * shared `lib/baselines/writer.js` funnel. The legacy `saveMaintainabilityFn`
- * / `saveCrapFn` injection seams are gone — the writer is itself the seam
- * (`writeFn` + `writeFileFn`), and the on-disk envelopes are now the
- * canonical V2 shape that `lib/baselines/reader.js` schema-validates.
- *
- * Change detection now uses the writer's structural-equality short-circuit
- * rather than write-then-byte-compare: we read the prior envelope through
- * the reader, pass it to the writer as `priorEnvelope`, and inspect the
- * returned envelope's `generatedAt`. When the rows + rollup are
- * structurally equal to the prior, the writer returns the prior envelope
- * unchanged and `didChange` stays false — no `writeFile` is invoked, the
- * on-disk bytes are guaranteed identical.
- *
- * Returns `{ didChange, files }` so callers (epic-deliver-finalize) can decide
- * whether to author a `baseline-refresh: epic-<id>` commit. `didChange` is the
- * union of per-file change detection — if any baseline's bytes change, the
- * commit is needed.
- *
- * Coverage source for crap regeneration defaults to `coverage/coverage-final.json`
- * via `delivery.quality.gates.crap.coveragePath`. When coverage is missing and
- * `requireCoverage` is true, the crap regeneration is skipped (didChange stays
- * false for that file) and a warn is emitted — the operator is expected to run
- * `npm run test:coverage` before /deliver if a refresh is anticipated.
- *
- * @param {{
- *   cwd?: string,
- *   resolveConfig?: typeof defaultResolveConfig,
- *   getBaselines?: typeof defaultGetBaselines,
- *   getQuality?: typeof defaultGetQuality,
- *   logger?: { warn?: (m: string) => void, info?: (m: string) => void },
- *   fsImpl?: { existsSync: typeof fs.existsSync, readFileSync: typeof fs.readFileSync, writeFileSync: typeof fs.writeFileSync, mkdirSync: typeof fs.mkdirSync, renameSync?: typeof fs.renameSync },
- *   scanDirectoryFn?: typeof scanDirectory,
- *   calculateAllFn?: typeof calculateAll,
- *   scanAndScoreFn?: typeof scanAndScore,
- *   loadCoverageFn?: typeof loadCoverage,
- *   resolveEscomplexVersionFn?: typeof resolveEscomplexVersion,
- *   resolveTsTranspilerVersionFn?: typeof resolveTsTranspilerVersion,
- *   writeFn?: typeof defaultWriteBaseline,
- *   writeFileFn?: typeof defaultWriteBaselineFile,
- *   loadPriorFn?: (absPath: string, kind: string) => object | null,
- * }} [opts]
- * @returns {Promise<{
- *   didChange: boolean,
- *   files: Array<{ kind: 'maintainability'|'crap', path: string, didChange: boolean, reason?: 'no-coverage'|'unchanged'|'updated' }>,
- * }>}
- */
-/**
- * Build the `files[]` entry for a baseline write, choosing between the
- * structural-equality short-circuit (no write, `reason: 'unchanged'`) and
- * the stamp-and-write path (`reason: 'updated'`). Story #4075 — collapses
- * the duplicated short-circuit branch shared by the MI and CRAP passes.
- *
- * @returns {{ entry: object, wrote: boolean }}
- */
-function commitBaselineEnvelope({
-  kind,
-  abs,
-  envelope,
-  priorEnvelope,
-  writeFileFn,
-  fsImpl,
-}) {
-  if (priorEnvelope && envelope === priorEnvelope) {
-    return {
-      entry: { kind, path: abs, didChange: false, reason: 'unchanged' },
-      wrote: false,
-    };
-  }
-  writeFileFn(abs, envelope, { fsImpl });
-  return {
-    entry: { kind, path: abs, didChange: true, reason: 'updated' },
-    wrote: true,
-  };
-}
-
-/**
- * Regenerate the maintainability baseline from a fresh tree scan. Returns
- * `null` when no maintainability baseline path is configured. The scanned
- * source list is returned so the CRAP pass can reuse it when the two passes
- * target the same dirs (Story #3663). Story #4075 — extracted from
- * `regenerateMainFromTree`.
- */
-async function regenerateMaintainability({
-  cwd,
-  baselines,
-  quality,
-  scanDirectoryFn,
-  calculateAllFn,
-  writeFn,
-  writeFileFn,
-  loadPriorFn,
-  fsImpl,
-}) {
-  const miPath = baselines?.maintainability?.path;
-  if (typeof miPath !== 'string' || miPath.length === 0) return null;
-
-  const miTargetDirs = quality?.maintainability?.targetDirs ?? [];
-  const miIgnoreGlobs = quality?.maintainability?.ignoreGlobs ?? [];
-  const miAbs = path.isAbsolute(miPath) ? miPath : path.resolve(cwd, miPath);
-  const miSourceList = [];
-  for (const dir of miTargetDirs) {
-    const abs = path.isAbsolute(dir) ? dir : path.resolve(cwd, dir);
-    scanDirectoryFn(abs, miSourceList, { cwd, ignoreGlobs: miIgnoreGlobs });
-  }
-  const scores = await calculateAllFn(miSourceList);
-
-  // Project the scoring helper's `{path: mi}` map onto the writer's
-  // canonical row shape. Story #2079 path-canon defence stays in place —
-  // the writer would canonicalise again, but doing it here keeps any
-  // pre-canonicalised comparison inside the function meaningful.
-  const miRows = filterExcludedRows(
-    Object.entries(scores).map(([key, mi]) => {
-      const rel = path.isAbsolute(key) ? path.relative(cwd, key) : key;
-      const posixRel = rel.split(path.sep).join('/');
-      return { path: canonicalisePath(posixRel), mi };
-    }),
-  );
-
-  const priorMi = loadPriorFn(miAbs, 'maintainability');
-  const envelope = writeFn({
-    kind: 'maintainability',
-    rows: miRows,
-    priorEnvelope: priorMi,
-  });
-  const { entry, wrote } = commitBaselineEnvelope({
-    kind: 'maintainability',
-    abs: miAbs,
-    envelope,
-    priorEnvelope: priorMi,
-    writeFileFn,
-    fsImpl,
-  });
-  return { entry, wrote, miSourceList, miTargetDirs, miIgnoreGlobs };
-}
-
-/**
- * Decide whether the CRAP pass can reuse the MI scan's file list — true only
- * when both passes target the same dirs with the same ignore globs
- * (Story #3663).
- */
-function crapDirsMatchMi({
-  miSourceList,
-  crapTargetDirs,
-  crapIgnoreGlobs,
-  miTargetDirs,
-  miIgnoreGlobs,
-}) {
-  return (
-    miSourceList !== null &&
-    crapTargetDirs.length === miTargetDirs.length &&
-    crapTargetDirs.every((d, i) => d === miTargetDirs[i]) &&
-    crapIgnoreGlobs.length === miIgnoreGlobs.length &&
-    crapIgnoreGlobs.every((g, i) => g === miIgnoreGlobs[i])
-  );
-}
-
-/**
- * Config-only sibling of `crapDirsMatchMi` (Story #4192): decide — before any
- * tree scan — whether the MI and CRAP passes target the same dirs with the
- * same ignore globs. When true, `regenerateMainFromTree` collapses the two
- * escomplex passes into a single combined `analyzeOnce` scan; when false it
- * falls back to the independent two-pass path. Pure array compare, no scan
- * list required.
- */
-function crapConfigMatchesMi({
-  crapTargetDirs,
-  crapIgnoreGlobs,
-  miTargetDirs,
-  miIgnoreGlobs,
-}) {
-  return (
-    crapTargetDirs.length === miTargetDirs.length &&
-    crapTargetDirs.every((d, i) => d === miTargetDirs[i]) &&
-    crapIgnoreGlobs.length === miIgnoreGlobs.length &&
-    crapIgnoreGlobs.every((g, i) => g === miIgnoreGlobs[i])
-  );
-}
-
-/**
- * Run the combined MI + CRAP single-pass scan once and project it into the
- * `{ calculateAllFn, scanDirectoryFn, scanAndScoreFn, loadCoverageFn }`
- * injection seams that `regenerateMaintainability` / `regenerateCrap` already
- * consume. Returns `null` when the combined path is NOT eligible (either
- * baseline unconfigured, dirs/globs differ, or coverage is required but
- * missing) — the caller then falls back to the two independent passes.
- *
- * Eligibility deliberately requires coverage to be present under
- * `requireCoverage`: when coverage is missing, the two-pass path takes a
- * dedicated `no-coverage` short-circuit for CRAP (no scan at all), and
- * reproducing that precise envelope is cleaner by deferring to the existing
- * `regenerateCrap` branch than by routing through the combined scanner.
- *
- * Story #4192 — collapses the duplicate escomplex AST parse on the full-tree
- * baseline path (2 parses/file → 1 parse/file). Byte-for-byte equivalent to
- * the two-pass path: the combined scan returns the same MI score map and the
- * same CRAP rows the separate passes would, and the downstream projection +
- * writer logic is shared verbatim.
- *
- * @returns {Promise<null | {
- *   calculateAllFn: () => Promise<Record<string, number>>,
- *   scanDirectoryFn: (dir: string, list: string[]) => string[],
- *   scanAndScoreFn: () => Promise<{ rows: Array<object> }>,
- *   loadCoverageFn: () => object,
- * }>}
- */
-async function buildCombinedScanSeams({
-  cwd,
-  baselines,
-  quality,
-  loadCoverageFn,
-  scanAndScoreCombinedFn,
-}) {
-  const miPath = baselines?.maintainability?.path;
-  const crapPath = baselines?.crap?.path;
-  if (
-    typeof miPath !== 'string' ||
-    miPath.length === 0 ||
-    typeof crapPath !== 'string' ||
-    crapPath.length === 0
-  ) {
-    return null; // both baselines must be configured to combine
-  }
-
-  const miTargetDirs = quality?.maintainability?.targetDirs ?? [];
-  const miIgnoreGlobs = quality?.maintainability?.ignoreGlobs ?? [];
-  const crapCfg = quality?.crap ?? {};
-  const crapTargetDirs = Array.isArray(crapCfg.targetDirs)
-    ? crapCfg.targetDirs
-    : [];
-  const crapIgnoreGlobs = Array.isArray(crapCfg.ignoreGlobs)
-    ? crapCfg.ignoreGlobs
-    : [];
-
-  if (
-    !crapConfigMatchesMi({
-      crapTargetDirs,
-      crapIgnoreGlobs,
-      miTargetDirs,
-      miIgnoreGlobs,
-    })
-  ) {
-    return null; // dirs/globs differ → two-pass fallback
-  }
-
-  const requireCoverage = crapCfg.requireCoverage !== false;
-  const coveragePath = crapCfg.coveragePath ?? 'coverage/coverage-final.json';
-  const coverageAbs = path.isAbsolute(coveragePath)
-    ? coveragePath
-    : path.resolve(cwd, coveragePath);
-  const coverage = loadCoverageFn(coverageAbs);
-
-  if (!coverage && requireCoverage) {
-    return null; // no coverage → let the two-pass CRAP short-circuit run
-  }
-
-  const { miScores, crap } = await scanAndScoreCombinedFn({
-    targetDirs: miTargetDirs,
-    coverage,
-    requireCoverage,
-    cwd,
-    ignoreGlobs: miIgnoreGlobs,
-  });
-
-  return {
-    // MI consumes the precomputed score map directly; the scanDirectory seam
-    // is short-circuited to a no-op list (the combined scan already walked
-    // the tree), so regenerateMaintainability's projection runs unchanged.
-    calculateAllFn: async () => miScores,
-    scanDirectoryFn: (_dir, list = []) => list,
-    // CRAP consumes the precomputed scan result; coverage is already loaded
-    // so its loadCoverage seam returns the same object without re-reading.
-    scanAndScoreFn: async () => crap,
-    loadCoverageFn: () => coverage,
-  };
-}
-
-/**
- * Regenerate the CRAP baseline from a fresh tree scan + coverage map.
- * Returns `null` when no CRAP baseline path is configured. Story #4075 —
- * extracted from `regenerateMainFromTree`.
- */
-async function regenerateCrap({
-  cwd,
-  baselines,
-  quality,
-  logger,
-  miScan,
-  scanAndScoreFn,
-  loadCoverageFn,
-  resolveEscomplexVersionFn,
-  resolveTsTranspilerVersionFn,
-  writeFn,
-  writeFileFn,
-  loadPriorFn,
-  fsImpl,
-}) {
-  const crapPath = baselines?.crap?.path;
-  if (typeof crapPath !== 'string' || crapPath.length === 0) return null;
-
-  const crapCfg = quality?.crap ?? {};
-  const crapTargetDirs = Array.isArray(crapCfg.targetDirs)
-    ? crapCfg.targetDirs
-    : [];
-  const crapIgnoreGlobs = Array.isArray(crapCfg.ignoreGlobs)
-    ? crapCfg.ignoreGlobs
-    : [];
-  const requireCoverage = crapCfg.requireCoverage !== false;
-  const coveragePath = crapCfg.coveragePath ?? 'coverage/coverage-final.json';
-  const crapAbs = path.isAbsolute(crapPath)
-    ? crapPath
-    : path.resolve(cwd, crapPath);
-  const coverageAbs = path.isAbsolute(coveragePath)
-    ? coveragePath
-    : path.resolve(cwd, coveragePath);
-  const coverage = loadCoverageFn(coverageAbs);
-
-  if (!coverage && requireCoverage) {
-    logger.warn?.(
-      `[baseline-snapshot] ⚠ no coverage at ${coveragePath} — skipping crap regeneration (refresh stays clean for this file).`,
-    );
-    return {
-      entry: {
-        kind: 'crap',
-        path: crapAbs,
-        didChange: false,
-        reason: 'no-coverage',
-      },
-      wrote: false,
-    };
-  }
-
-  const reusePreScan = crapDirsMatchMi({
-    miSourceList: miScan?.miSourceList ?? null,
-    crapTargetDirs,
-    crapIgnoreGlobs,
-    miTargetDirs: miScan?.miTargetDirs ?? [],
-    miIgnoreGlobs: miScan?.miIgnoreGlobs ?? [],
-  });
-  const { rows } = await scanAndScoreFn({
-    targetDirs: crapTargetDirs,
-    coverage,
-    requireCoverage,
-    cwd,
-    ignoreGlobs: crapIgnoreGlobs,
-    ...(reusePreScan && { preScannedFiles: miScan.miSourceList }),
-  });
-  // scanAndScore yields rows keyed by `file:`; the per-kind crap module's
-  // `projectRow` handles `path ?? file`, so the writer takes either.
-  // Filter to actually-scored rows here (crap is nullable for trivial
-  // methods); the writer's `assertEnvelope` would reject otherwise.
-  const crapRows = (rows ?? []).filter(
-    (r) => typeof r?.crap === 'number' && Number.isFinite(r.crap),
-  );
-
-  // CRAP gates need the running scorer's versions present on the
-  // envelope-adjacent shape; the V2 envelope itself only carries
-  // `kernelVersion`, so we stamp escomplex/tsTranspiler via the writer's
-  // `kernelVersion` override and let the existing per-kind module resolve
-  // the rest. We also resolve them eagerly so a test stub can pin them
-  // deterministically.
-  resolveEscomplexVersionFn(cwd);
-  resolveTsTranspilerVersionFn();
-
-  const priorCrap = loadPriorFn(crapAbs, 'crap');
-  const envelope = writeFn({
-    kind: 'crap',
-    rows: crapRows,
-    priorEnvelope: priorCrap,
-  });
-  return commitBaselineEnvelope({
-    kind: 'crap',
-    abs: crapAbs,
-    envelope,
-    priorEnvelope: priorCrap,
-    writeFileFn,
-    fsImpl,
-  });
-}
-
-export async function regenerateMainFromTree({
-  cwd = process.cwd(),
-  resolveConfig = defaultResolveConfig,
-  getBaselines = defaultGetBaselines,
-  getQuality = defaultGetQuality,
-  logger = console,
-  fsImpl = fs,
-  scanDirectoryFn = scanDirectory,
-  calculateAllFn = calculateAll,
-  scanAndScoreFn = scanAndScore,
-  scanAndScoreCombinedFn = scanAndScoreCombined,
-  loadCoverageFn = loadCoverage,
-  resolveEscomplexVersionFn = resolveEscomplexVersion,
-  resolveTsTranspilerVersionFn = resolveTsTranspilerVersion,
-  writeFn = defaultWriteBaseline,
-  writeFileFn = defaultWriteBaselineFile,
-  loadPriorFn = defaultLoadPriorEnvelope,
-} = {}) {
-  const config = resolveConfig({ cwd });
-  const baselines = getBaselines(config);
-  const quality = getQuality(config);
-
-  const files = [];
-  let didChange = false;
-
-  // Story #4192 — when MI and CRAP target the same dirs/globs (and coverage
-  // is present), collapse the two escomplex passes into a single combined
-  // `analyzeOnce` scan. The combined scan is projected into the same scan
-  // seams the two passes consume, so the MI/CRAP envelope projection + writer
-  // logic below runs byte-for-byte identically either way. When the combined
-  // path is not eligible, `combined` is `null` and the original two
-  // independent passes run.
-  //
-  // The combined path is an internal optimization of the *production-default*
-  // scan seams. A caller that injects its own `calculateAllFn` or
-  // `scanAndScoreFn` is explicitly opting into the two independent passes
-  // (the DI contract: "use my seam"), so the combined path defers to those
-  // injected seams rather than silently bypassing them. In production neither
-  // seam is overridden, so the optimization is always taken.
-  const usingDefaultScanSeams =
-    calculateAllFn === calculateAll && scanAndScoreFn === scanAndScore;
-  const combined = usingDefaultScanSeams
-    ? await buildCombinedScanSeams({
-        cwd,
-        baselines,
-        quality,
-        loadCoverageFn,
-        scanAndScoreCombinedFn,
-      })
-    : null;
-
-  const miCalculateAllFn = combined ? combined.calculateAllFn : calculateAllFn;
-  const miScanDirectoryFn = combined
-    ? combined.scanDirectoryFn
-    : scanDirectoryFn;
-  const crapScanAndScoreFn = combined
-    ? combined.scanAndScoreFn
-    : scanAndScoreFn;
-  const crapLoadCoverageFn = combined
-    ? combined.loadCoverageFn
-    : loadCoverageFn;
-
-  const miScan = await regenerateMaintainability({
-    cwd,
-    baselines,
-    quality,
-    scanDirectoryFn: miScanDirectoryFn,
-    calculateAllFn: miCalculateAllFn,
-    writeFn,
-    writeFileFn,
-    loadPriorFn,
-    fsImpl,
-  });
-  if (miScan) {
-    files.push(miScan.entry);
-    didChange = didChange || miScan.wrote;
-  }
-
-  const crapResult = await regenerateCrap({
-    cwd,
-    baselines,
-    quality,
-    logger,
-    miScan,
-    scanAndScoreFn: crapScanAndScoreFn,
-    loadCoverageFn: crapLoadCoverageFn,
-    resolveEscomplexVersionFn,
-    resolveTsTranspilerVersionFn,
-    writeFn,
-    writeFileFn,
-    loadPriorFn,
-    fsImpl,
-  });
-  if (crapResult) {
-    files.push(crapResult.entry);
-    didChange = didChange || crapResult.wrote;
-  }
-
-  return { didChange, files };
-}
-
-/**
- * Story #2135 / Task #2145 — load the prior envelope for the structural-
- * equality short-circuit. Reads the file through `reader.loadFile` (which
- * schema-validates against the per-kind envelope) and synthesises an
- * envelope object the writer can compare against. Returns `null` when the
- * file is missing, unreadable, or fails schema validation — in which case
- * the writer falls through to the normal stamp-and-write path.
- *
- * Exported as the default `loadPriorFn` so tests can replace it without
- * monkey-patching the module surface.
- */
-function defaultLoadPriorEnvelope(absPath, kind) {
-  try {
-    const parsed = readerLoadFile(absPath, { kind });
-    if (!parsed || !Array.isArray(parsed.rows)) return null;
-    // Synthesise the envelope shape the writer's short-circuit expects.
-    return {
-      $schema: `.agents/schemas/baselines/${kind}.schema.json`,
-      kernelVersion: parsed.kernelVersion,
-      generatedAt: parsed.generatedAt,
-      rollup: parsed.rollup,
-      rows: parsed.rows,
-    };
-  } catch {
-    return null;
-  }
-}
-
-/**
- * Story #1396 (re-targeted by Story #1467; relocated by Story #1585):
- * fork the tracked main baselines into `temp/epic/<id>/baselines/` and
- * commit the snapshots onto the Epic branch. Originally lived in
- * `epic-plan-spec.js`; relocated to the lower-level module so callers
- * (notably `lib/story-init/branch-initializer.js`) do not need to import
- * the heavy CLI script.
- *
- * `epic-plan-spec.js` re-exports this symbol to preserve the historic
- * import path and the existing test suite.
- *
- * Failure modes are non-fatal: a missing source baseline downgrades to a
- * `--full-scope` warning, an unresolvable Epic branch is logged and
- * skipped, and the helper never throws into the caller. Idempotent: the
- * downstream `commitSnapshotsToEpicBranch` returns `no-change` when the
- * staged tree matches the Epic branch tip, so subsequent invocations on
- * the same Epic produce no new commit.
- *
- * @param {{
- *   epicId: number,
- *   cwd?: string,
- *   baseBranch?: string,
- *   logger?: object,
- *   forkFn?: typeof forkMainToEpic,
- *   commitFn?: typeof commitSnapshotsToEpicBranch,
- *   ensureEpicBranchRefFn?: typeof defaultEnsureEpicBranchRef,
- * }} opts
- * @returns {{ fork: object, commit: object }}
- */
-export function forkAndCommitEpicSnapshot({
-  epicId,
-  cwd = PROJECT_ROOT,
-  baseBranch = 'main',
-  logger = console,
-  forkFn = forkMainToEpic,
-  commitFn = commitSnapshotsToEpicBranch,
-  ensureEpicBranchRefFn = defaultEnsureEpicBranchRef,
-} = {}) {
-  const epicBranch = `epic/${epicId}`;
-  try {
-    ensureEpicBranchRefFn(epicBranch, baseBranch, cwd, {
-      progress: () => {},
-    });
-  } catch (err) {
-    logger.warn?.(
-      `[baseline-snapshot] snapshot-fork: failed to ensure ${epicBranch}: ${err?.message ?? err}. Skipping fork.`,
-    );
-    return {
-      fork: { epicId, results: [] },
-      commit: { committed: false, reason: 'epic-missing' },
-    };
-  }
-  const fork = forkFn({ epicId, cwd, logger });
-  const commit = commitFn({
-    epicId,
-    cwd,
-    epicBranch,
-    files: fork.results.filter((r) => r.written || r.reason === 'idempotent'),
-    logger,
-  });
-  return { fork, commit };
-}