kirograph 0.28.0 → 0.28.1

package/dist/data/pixelrag-manager.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../../src/data/pixelrag-manager.ts"],
-  "sourcesContent": ["/**\n * PixelRAG lifecycle manager.\n *\n * Handles: Python check, pip install, index build (with manifest staleness),\n * server spawn + health poll, cleanup on exit.\n *\n * EXPERIMENTAL: This module is experimental and may change without notice.\n */\n\nimport * as fs from 'fs';\nimport * as os from 'os';\nimport * as path from 'path';\nimport { spawnSync, spawn } from 'child_process';\nimport type { ChildProcess } from 'child_process';\nimport type { PixelRAGManifestEntry } from './types';\n\n// Environment variables required to prevent FAISS/PyTorch OpenMP conflict on macOS.\n// Without OMP_NUM_THREADS=1 the two runtimes clash and segfault during model loading.\nconst PIXELRAG_ENV = {\n  ...process.env,\n  OMP_NUM_THREADS: '1',\n  KMP_DUPLICATE_LIB_OK: 'TRUE',\n};\n\n// \u2500\u2500 Python detection \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/** Returns the python3 binary name if available and \u2265 3.12, otherwise null. */\nexport function detectPython(): string | null {\n  for (const bin of ['python3', 'python']) {\n    try {\n      const result = spawnSync(bin, ['--version'], { encoding: 'utf8', timeout: 5000 });\n      if (result.status !== 0) continue;\n      const out = (result.stdout + result.stderr).trim();\n      const match = out.match(/Python (\\d+)\\.(\\d+)/);\n      if (!match) continue;\n      const [, major, minor] = match;\n      if (Number(major) >= 3 && Number(minor) >= 12) return bin;\n    } catch { /* not found */ }\n  }\n  return null;\n}\n\nexport function ensurePython(): string {\n  const bin = detectPython();\n  if (!bin) {\n    throw new Error(\n      'PixelRAG (visual PDF search) requires Python 3.12+.\\n' +\n      'Install from https://python.org or via brew: brew install python@3.12',\n    );\n  }\n  return bin;\n}\n\n// \u2500\u2500 pixelrag binary detection \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Finds the `pixelrag` CLI binary.\n * Searches: next to the Python executable, PATH, common brew paths.\n */\nfunction getPixelRAGBin(python: string): string {\n  // Look next to the Python executable (covers pip-installed scripts)\n  try {\n    const exe = spawnSync(python, ['-c', 'import sys; print(sys.executable)'], {\n      encoding: 'utf8', timeout: 5000,\n    }).stdout?.trim() ?? '';\n    if (exe) {\n      const candidate = path.join(path.dirname(exe), 'pixelrag');\n      if (fs.existsSync(candidate)) return candidate;\n    }\n  } catch { /* ignore */ }\n\n  // Try pixelrag in PATH\n  try {\n    const which = spawnSync('which', ['pixelrag'], { encoding: 'utf8', timeout: 3000 });\n    if (which.status === 0) {\n      const bin = which.stdout.trim();\n      if (bin) return bin;\n    }\n  } catch { /* ignore */ }\n\n  // Common brew locations\n  for (const loc of ['/opt/homebrew/bin/pixelrag', '/usr/local/bin/pixelrag']) {\n    if (fs.existsSync(loc)) return loc;\n  }\n\n  throw new Error(\n    'pixelrag binary not found.\\n' +\n    'Run: pip install pixelrag[index,serve] pixelrag-render[pdf]\\n' +\n    'Also requires poppler: brew install poppler',\n  );\n}\n\n// \u2500\u2500 WSL2 / platform checks \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function detectWSL2(): boolean {\n  try {\n    const version = fs.readFileSync('/proc/version', 'utf8');\n    return /microsoft|WSL/i.test(version);\n  } catch {\n    return false;\n  }\n}\n\n/** Returns free RAM in bytes. */\nfunction freeRam(): number {\n  return os.freemem();\n}\n\nconst WARN_RAM_BYTES  = 4 * 1024 * 1024 * 1024; // 4 GB\nconst BLOCK_RAM_BYTES = 2 * 1024 * 1024 * 1024; // 2 GB\n\nexport function checkRam(): 'ok' | 'warn' | 'block' {\n  const free = freeRam();\n  if (free < BLOCK_RAM_BYTES) return 'block';\n  if (free < WARN_RAM_BYTES)  return 'warn';\n  return 'ok';\n}\n\n// \u2500\u2500 PixelRAG installation \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nexport function isPixelRAGInstalled(python: string): boolean {\n  // Check the binary first (most reliable)\n  try {\n    const bin = getPixelRAGBin(python);\n    const result = spawnSync(bin, ['--help'], { encoding: 'utf8', timeout: 5000 });\n    return result.status === 0;\n  } catch { /* binary not found */ }\n  return false;\n}\n\nexport function installPixelRAG(python: string): void {\n  console.log('  Installing PixelRAG (pip install pixelrag[index,serve] pixelrag-render[pdf])\u2026');\n\n  // Detect brew-managed Python \u2014 requires --break-system-packages\n  let exePath = '';\n  try {\n    exePath = spawnSync(python, ['-c', 'import sys; print(sys.executable)'], {\n      encoding: 'utf8', timeout: 5000,\n    }).stdout?.trim() ?? '';\n  } catch { /* ignore */ }\n  const extraArgs = (exePath.includes('/opt/homebrew/') || exePath.includes('/usr/local/'))\n    ? ['--break-system-packages']\n    : [];\n\n  const result = spawnSync(\n    python,\n    ['-m', 'pip', 'install', 'pixelrag[index,serve]', 'pixelrag-render[pdf]', ...extraArgs],\n    { stdio: 'inherit', timeout: 300_000 },\n  );\n  if (result.status !== 0) {\n    throw new Error(\n      'pip install pixelrag failed. Check your Python environment.\\n' +\n      'Also ensure poppler is installed: brew install poppler',\n    );\n  }\n}\n\nexport function downloadPixelRAGModel(python: string): void {\n  // The model is downloaded automatically by pixelrag on first use;\n  // this function pre-warms the cache at install time.\n  const pixelragBin = getPixelRAGBin(python);\n  console.log('  Pre-downloading Qwen3-VL-Embedding-2B model (~4 GB)\u2026');\n  const result = spawnSync(\n    pixelragBin,\n    ['embed', '--help'], // lightweight call that triggers model cache check\n    { stdio: 'inherit', timeout: 1800_000, env: PIXELRAG_ENV },\n  );\n  if (result.status !== 0) {\n    console.warn('  \u26A0 Model pre-download may have failed \u2014 it will download on first use.');\n  }\n}\n\nexport function ensurePixelRAGInstalled(python: string): void {\n  if (!isPixelRAGInstalled(python)) {\n    installPixelRAG(python);\n  }\n}\n\n// \u2500\u2500 Manifest / staleness \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nfunction readManifest(manifestPath: string): PixelRAGManifestEntry[] {\n  try {\n    return JSON.parse(fs.readFileSync(manifestPath, 'utf8'));\n  } catch {\n    return [];\n  }\n}\n\nfunction writeManifest(manifestPath: string, entries: PixelRAGManifestEntry[]): void {\n  fs.writeFileSync(manifestPath, JSON.stringify(entries, null, 2));\n}\n\nfunction buildManifestEntries(absPaths: string[]): PixelRAGManifestEntry[] {\n  return absPaths.map(p => {\n    try {\n      const st = fs.statSync(p);\n      return { path: p, mtime: st.mtimeMs, size: st.size };\n    } catch {\n      return { path: p, mtime: 0, size: 0 };\n    }\n  });\n}\n\nfunction manifestIsStale(\n  current: PixelRAGManifestEntry[],\n  fresh: PixelRAGManifestEntry[],\n): boolean {\n  if (current.length !== fresh.length) return true;\n  const map = new Map(current.map(e => [e.path, e]));\n  for (const f of fresh) {\n    const c = map.get(f.path);\n    if (!c || c.mtime !== f.mtime || c.size !== f.size) return true;\n  }\n  return false;\n}\n\n// \u2500\u2500 Get flagged PDFs from kirograph DB \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\n/**\n * Queries the kirograph data DB for PDF datasets that have at least one page\n * with needs_ocr='true' or has_columns='true' (complex visual layout).\n * Returns absolute paths.\n */\nexport function getFlaggedPdfs(\n  rawDb: { all: (sql: string, params?: unknown[]) => unknown[] },\n  projectRoot: string,\n): string[] {\n  const datasets = rawDb.all(\n    `SELECT id, file_path FROM data_datasets WHERE format = 'pdf'`,\n  ) as { id: string; file_path: string }[];\n\n  const flagged: string[] = [];\n  for (const ds of datasets) {\n    const tableName = `data_rows_${ds.id.replace(/[^a-zA-Z0-9_]/g, '_')}`;\n    try {\n      const rows = rawDb.all(\n        `SELECT COUNT(*) as cnt FROM \"${tableName}\" WHERE needs_ocr = 'true' OR has_columns = 'true'`,\n      ) as { cnt: number }[];\n      if (rows[0]?.cnt > 0) {\n        const absPath = path.isAbsolute(ds.file_path)\n          ? ds.file_path\n          : path.join(projectRoot, ds.file_path);\n        flagged.push(absPath);\n      }\n    } catch { /* table not yet created \u2014 skip */ }\n  }\n  return flagged;\n}\n\n// \u2500\u2500 Index build \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\ninterface BuildIndexOptions {\n  python: string;\n  flaggedPdfs: string[];\n  projectRoot: string;\n  kirographDir: string;\n  force?: boolean;\n}\n\nexport function buildIndex(opts: BuildIndexOptions): void {\n  const { python, flaggedPdfs, kirographDir, force } = opts;\n  const indexDir     = path.join(kirographDir, 'pixelrag-index');\n  const stagingDir   = path.join(kirographDir, 'pixelrag-staging');\n  const manifestFile = path.join(kirographDir, 'pixelrag-manifest.json');\n  const idMapFile    = path.join(kirographDir, 'pixelrag-id-map.json');\n\n  if (flaggedPdfs.length === 0) {\n    console.log('  PixelRAG: no visually complex PDFs found \u2014 skipping index build.');\n    return;\n  }\n\n  const freshEntries  = buildManifestEntries(flaggedPdfs);\n  const currentEntries = readManifest(manifestFile);\n  const indexExists   = fs.existsSync(indexDir);\n\n  if (!force && indexExists && !manifestIsStale(currentEntries, freshEntries)) {\n    console.log(`  PixelRAG: index up to date (${flaggedPdfs.length} PDF${flaggedPdfs.length > 1 ? 's' : ''}).`);\n    return;\n  }\n\n  const pixelragBin = getPixelRAGBin(python);\n\n  // pixelrag PDFSource expects numerically-named files (0.pdf, 1.pdf, \u2026) so that\n  // article IDs are integers. We stage symlinks and keep an id\u2192path map.\n  if (fs.existsSync(stagingDir)) {\n    fs.rmSync(stagingDir, { recursive: true, force: true });\n  }\n  fs.mkdirSync(stagingDir, { recursive: true });\n\n  const idMap: Record<string, string> = {};\n  for (let i = 0; i < flaggedPdfs.length; i++) {\n    fs.symlinkSync(flaggedPdfs[i], path.join(stagingDir, `${i}.pdf`));\n    idMap[String(i)] = flaggedPdfs[i];\n  }\n\n  const tileEstimate = flaggedPdfs.length * 40;\n  const cpuMinutes   = Math.round(tileEstimate * 10 / 60);\n  const mpsMinutes   = Math.round(tileEstimate * 2 / 60);\n  console.log(\n    `  Building PixelRAG index: ~${tileEstimate} tiles` +\n    ` (~${cpuMinutes} min on CPU, ~${mpsMinutes} min on MPS)\u2026`,\n  );\n\n  const args = [\n    'index', 'build',\n    '--source',      stagingDir,\n    '--source-type', 'pdf',\n    '--output',      indexDir,\n    '--device',      'cpu',\n  ];\n  if (force) args.push('--force');\n\n  const result = spawnSync(pixelragBin, args, {\n    stdio: 'inherit',\n    timeout: 7200_000, // 2h hard limit\n    env: PIXELRAG_ENV,\n  });\n\n  // Clean up staging regardless of outcome\n  try { fs.rmSync(stagingDir, { recursive: true, force: true }); } catch { /* best-effort */ }\n\n  if (result.status !== 0) {\n    throw new Error('PixelRAG index build failed. Check Python output above for details.');\n  }\n\n  // Persist id map and manifest\n  fs.writeFileSync(idMapFile, JSON.stringify(idMap, null, 2));\n  writeManifest(manifestFile, freshEntries);\n  console.log(`  \u2713 PixelRAG index built (${flaggedPdfs.length} PDF${flaggedPdfs.length > 1 ? 's' : ''}).`);\n}\n\n// \u2500\u2500 Server lifecycle \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n\nlet _serverProcess: ChildProcess | null = null;\nlet _cleanupRegistered = false;\n\nfunction registerCleanup(): void {\n  if (_cleanupRegistered) return;\n  _cleanupRegistered = true;\n\n  const cleanup = (): void => {\n    if (_serverProcess) {\n      try { _serverProcess.kill('SIGTERM'); } catch { /* best-effort */ }\n      setTimeout(() => {\n        try { _serverProcess?.kill('SIGKILL'); } catch { /* best-effort */ }\n      }, 5000).unref();\n    }\n  };\n\n  process.on('exit', cleanup);\n  process.on('SIGINT',  () => { cleanup(); process.exit(0); });\n  process.on('SIGTERM', () => { cleanup(); process.exit(0); });\n}\n\nasync function pollHealth(endpoint: string, maxAttempts: number, intervalMs: number): Promise<boolean> {\n  for (let i = 0; i < maxAttempts; i++) {\n    await new Promise(r => setTimeout(r, intervalMs));\n    try {\n      const res = await fetch(`${endpoint}/health`, { signal: AbortSignal.timeout(2000) });\n      if (res.ok) return true;\n      if (res.status !== 404 && res.status !== 503) {\n        console.warn(`  \u26A0 Port ${endpoint}: unexpected response (${res.status}). Another process may be on this port.`);\n        return false;\n      }\n    } catch (e: unknown) {\n      const err = e as { code?: string };\n      if (err.code && err.code !== 'ECONNREFUSED' && err.code !== 'ECONNRESET' && err.code !== 'UND_ERR_CONNECT_TIMEOUT') {\n        console.warn(`  \u26A0 PixelRAG health check: ${String(e)}`);\n      }\n    }\n    if ((i + 1) % 8 === 0) {\n      console.log(`  PixelRAG loading model\u2026 ${Math.round((i + 1) * intervalMs / 1000)}s elapsed`);\n    }\n  }\n  return false;\n}\n\nexport async function startServer(python: string, port: number, kirographDir: string): Promise<void> {\n  const endpoint  = `http://localhost:${port}`;\n  const indexDir  = path.join(kirographDir, 'pixelrag-index');\n\n  const ramState = checkRam();\n  if (ramState === 'block') {\n    throw new Error(\n      `PixelRAG server requires at least 4 GB free RAM.\\n` +\n      `Current free: ${(freeRam() / 1024 / 1024 / 1024).toFixed(1)} GB.\\n` +\n      `Close other applications and retry, or disable enableVisualPDF.`,\n    );\n  }\n  if (ramState === 'warn') {\n    console.warn(\n      `  \u26A0 Low RAM: ${(freeRam() / 1024 / 1024 / 1024).toFixed(1)} GB free. ` +\n      `PixelRAG may degrade system performance.`,\n    );\n  }\n\n  if (detectWSL2()) {\n    console.warn(\n      '  \u26A0 WSL2 detected. Visual PDF search has known limitations:\\n' +\n      '    \u2022 Ensure your project is on the Linux filesystem (/home/...), not /mnt/c/...\\n' +\n      '    \u2022 Allocate at least 8 GB to WSL2 in %USERPROFILE%\\\\.wslconfig\\n' +\n      '    \u2022 CUDA requires updated NVIDIA drivers with WSL2 support',\n    );\n  }\n\n  // Check if already running\n  try {\n    const res = await fetch(`${endpoint}/health`, { signal: AbortSignal.timeout(2000) });\n    if (res.ok) {\n      console.log(`  PixelRAG server already running on port ${port}.`);\n      return;\n    }\n  } catch { /* not running */ }\n\n  if (!fs.existsSync(indexDir)) {\n    console.warn(\n      `  \u26A0 PixelRAG index not found at ${indexDir}.\\n` +\n      `  Run: kirograph index \u2014 to build it first.`,\n    );\n    return;\n  }\n\n  const pixelragBin = getPixelRAGBin(python);\n  console.log(`  Starting PixelRAG server on port ${port}\u2026`);\n\n  _serverProcess = spawn(\n    pixelragBin,\n    [\n      'serve',\n      '--index-dir',     indexDir,\n      '--tiles-dir',     path.join(indexDir, 'tiles'),\n      '--articles-json', path.join(indexDir, 'articles.json'),\n      '--port',          String(port),\n    ],\n    { stdio: ['ignore', 'ignore', 'ignore'], detached: false, env: PIXELRAG_ENV },\n  );\n\n  _serverProcess.on('error', err => {\n    console.warn(`  \u26A0 PixelRAG server error: ${err.message}`);\n  });\n\n  registerCleanup();\n\n  // Poll /health \u2014 startup only, 90 attempts \u00D7 2s = 3 minutes max\n  const ready = await pollHealth(endpoint, 90, 2000);\n  if (ready) {\n    console.log(`  \u2713 PixelRAG server ready on port ${port}.`);\n  } else {\n    console.warn(\n      `  \u26A0 PixelRAG server did not respond within 3 minutes.\\n` +\n      `  Visual PDF search calls will fail until it is ready.`,\n    );\n  }\n}\n"],
-  "mappings": 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-  "names": []
-}

package/dist/data/profiler.d.ts

@@ -1,29 +0,0 @@
-/**
- * Column Profiler
- *
- * Analyzes parsed rows to produce column profiles:
- * - Type inference (string, integer, float, boolean, date, null, mixed)
- * - Null count and percentage
- * - Cardinality (distinct values)
- * - Min/max values
- * - Mean (for numeric columns)
- * - Sample values (up to 5)
- */
-import type { DataColumn, ParsedRow } from './types';
-/**
- * Profile columns from a batch of rows.
- * Call repeatedly with batches, then call finalize() to get the final profiles.
- */
-export declare class ColumnProfiler {
-    private stats;
-    private columnOrder;
-    /**
-     * Process a batch of rows.
-     */
-    addBatch(rows: ParsedRow[], columns: string[]): void;
-    /**
-     * Finalize and return column profiles.
-     */
-    finalize(datasetId: string): DataColumn[];
-}
-//# sourceMappingURL=profiler.d.ts.map

package/dist/data/profiler.d.ts.map

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package/dist/data/queries.d.ts

@@ -1,95 +0,0 @@
-/**
- * Data Queries
- *
- * Read-side helpers for MCP tools and CLI commands.
- * Handles: list, describe, query (with filters), aggregate, search.
- */
-import type { DataSet, DataColumn, QueryFilter, AggregateMetric, CorrelationPair, JoinType, ColumnQuality } from './types';
-export interface ValidationRule {
-    column: string;
-    rules: string[];
-}
-export interface SampleHint {
-    column: string;
-    hint: string;
-}
-export declare class DataQueries {
-    private readonly db;
-    constructor(db: any);
-    listDatasets(): DataSet[];
-    describeDataset(datasetId: string): {
-        dataset: DataSet;
-        columns: DataColumn[];
-    } | null;
-    describeColumn(datasetId: string, columnName: string): DataColumn | null;
-    queryRows(datasetId: string, opts?: {
-        filters?: QueryFilter[];
-        columns?: string[];
-        limit?: number;
-        offset?: number;
-    }): {
-        rows: any[];
-        totalMatching: number;
-    } | null;
-    aggregate(datasetId: string, opts: {
-        groupBy: string[];
-        metrics: AggregateMetric[];
-        filters?: QueryFilter[];
-    }): {
-        rows: any[];
-    } | null;
-    searchColumns(datasetId: string, query: string): DataColumn[];
-    getStats(): {
-        datasets: number;
-        totalRows: number;
-        totalColumns: number;
-    };
-    join(opts: {
-        left: string;
-        right: string;
-        leftColumn: string;
-        rightColumn: string;
-        type?: JoinType;
-        columns?: string[];
-        limit?: number;
-    }): {
-        rows: any[];
-        totalMatching: number;
-    } | null;
-    correlations(datasetId: string, threshold?: number): CorrelationPair[] | null;
-    getHistory(datasetId: string, limit?: number): Array<{
-        id: number;
-        datasetId: string;
-        snapshotAt: number;
-        rowCount: number;
-        columnCount: number;
-        columns: Array<{
-            name: string;
-            type: string;
-            cardinality: number;
-            nullPct: number;
-        }>;
-        contentHash: string;
-    }> | null;
-    detectDrift(datasetId: string): {
-        hasDrift: boolean;
-        addedColumns: string[];
-        removedColumns: string[];
-        changedColumns: Array<{
-            name: string;
-            changes: string[];
-        }>;
-        rowCountDelta: number;
-    } | null;
-    quality(datasetId: string): ColumnQuality[] | null;
-    /**
-     * Infer validation rules from column profiles.
-     * Returns rules the code should apply when reading/writing this dataset.
-     */
-    validationRules(datasetId: string): ValidationRule[] | null;
-    /**
-     * From column profiles, provide hints for generating realistic test data.
-     */
-    sampleHints(datasetId: string): SampleHint[] | null;
-}
-//# sourceMappingURL=queries.d.ts.map

package/dist/data/queries.d.ts.map

@@ -1 +0,0 @@
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package/dist/data/types.d.ts

@@ -1,103 +0,0 @@
-/**
- * KiroGraph Data Module — Type Definitions
- *
- * Types for tabular data indexing, profiling, querying, and aggregation.
- * All populated only when enableData=true in config.
- */
-export interface DataSet {
-    id: string;
-    filePath: string;
-    format: 'csv' | 'tsv' | 'jsonl' | 'json' | 'xlsx' | 'parquet';
-    rowCount: number;
-    columnCount: number;
-    fileSize: number;
-    contentHash: string;
-    summary: string | null;
-    indexedAt: number;
-}
-export type InferredType = 'string' | 'integer' | 'float' | 'boolean' | 'date' | 'null' | 'mixed';
-export interface DataColumn {
-    id: string;
-    datasetId: string;
-    name: string;
-    position: number;
-    inferredType: InferredType;
-    nullable: boolean;
-    nullCount: number;
-    nullPct: number;
-    cardinality: number;
-    minValue: string | null;
-    maxValue: string | null;
-    meanValue: number | null;
-    sampleValues: string[];
-    summary: string | null;
-    updatedAt: number;
-}
-export interface QueryFilter {
-    column: string;
-    op: 'eq' | 'neq' | 'gt' | 'gte' | 'lt' | 'lte' | 'contains' | 'in' | 'is_null' | 'between';
-    value: any;
-}
-export type AggregateOp = 'count' | 'sum' | 'avg' | 'min' | 'max' | 'count_distinct';
-export interface AggregateMetric {
-    column: string;
-    op: AggregateOp;
-    alias?: string;
-}
-export interface JoinCondition {
-    leftColumn: string;
-    rightColumn: string;
-}
-export type JoinType = 'inner' | 'left' | 'right';
-export interface CorrelationPair {
-    column1: string;
-    column2: string;
-    correlation: number;
-    strength: 'strong' | 'moderate' | 'weak' | 'negligible';
-}
-export type DataRefType = 'reads' | 'writes' | 'imports' | 'configures';
-export interface DataCodeRef {
-    datasetId: string;
-    qualifiedName: string;
-    refType: DataRefType;
-    confidence: number;
-}
-export interface ParsedRow {
-    [column: string]: string | number | boolean | null;
-}
-export interface ParseResult {
-    columns: string[];
-    rows: ParsedRow[];
-    format: string;
-    totalRows: number;
-}
-export interface DataFormatParser {
-    name: string;
-    extensions: string[];
-    /** Check if the optional dependency is available */
-    isAvailable(): boolean;
-    /** Parse a file, yielding rows in batches via callback */
-    parse(filePath: string, opts: {
-        maxRows: number;
-        onBatch: (rows: ParsedRow[], columns: string[]) => void;
-    }): Promise<{
-        columns: string[];
-        totalRows: number;
-    }>;
-}
-export interface DataIndexResult {
-    datasetsIndexed: number;
-    rowsIndexed: number;
-    columnsProfiled: number;
-    errors: string[];
-    duration: number;
-}
-export interface ColumnQuality {
-    column: string;
-    riskScore: number;
-    nullRisk: number;
-    cardinalityRisk: number;
-    typeRisk: number;
-    issues: string[];
-}
-//# sourceMappingURL=types.d.ts.map

package/dist/data/types.d.ts.map

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package/dist/db/database.d.ts

@@ -1,190 +0,0 @@
-/**
- * KiroGraph Database Layer
- * Wraps node-sqlite3-wasm for portability (no native bindings needed).
- */
-import type { Node, Edge, FileRecord, NodeKind, GraphStats, NodeContext, NodeMetrics, SearchOptions } from '../types';
-import type { ArchPackage, ArchLayer, ArchPackageDep, ArchLayerDep, ArchCoupling } from '../architecture/types';
-export declare class GraphDatabase {
-    private db;
-    private projectRoot;
-    constructor(projectRoot: string);
-    private applySchema;
-    /**
-     * Apply memory schema tables. Called when enableMemory is true.
-     * Safe to call multiple times (CREATE IF NOT EXISTS).
-     */
-    applyMemorySchema(): void;
-    /**
-     * Apply docs schema tables. Called when enableDocs is true.
-     * Safe to call multiple times (CREATE IF NOT EXISTS).
-     */
-    applyDocsSchema(): void;
-    /**
-     * Apply data schema tables. Called when enableData is true.
-     * Safe to call multiple times (CREATE IF NOT EXISTS).
-     */
-    applyDataSchema(): void;
-    /**
-     * Apply patterns schema tables. Called when enablePatterns is true.
-     * Safe to call multiple times (CREATE IF NOT EXISTS).
-     */
-    applyPatternsSchema(): void;
-    /**
-     * Apply security schema tables. Called when enableSecurity is true.
-     * Safe to call multiple times (CREATE IF NOT EXISTS).
-     */
-    applySecuritySchema(): void;
-    /**
-     * Get the raw database handle (for MemoryDatabase).
-     */
-    getRawDb(): any;
-    private runMigrations;
-    upsertFile(record: FileRecord): void;
-    getFile(filePath: string): FileRecord | null;
-    getAllFiles(): FileRecord[];
-    deleteFile(filePath: string): void;
-    private rowToFile;
-    upsertNode(node: Node): void;
-    getNode(id: string): Node | null;
-    getNodesByFile(filePath: string): Node[];
-    getNodesByKind(kind: Node['kind']): Node[];
-    findNodesByExactName(name: string, kinds?: NodeKind[], limit?: number): Node[];
-    searchNodes(query: string, opts?: SearchOptions): Node[];
-    searchNodesByName(name: string, opts?: SearchOptions): Node[];
-    deleteNodesByFile(filePath: string): void;
-    private rowToNode;
-    insertEdge(edge: Edge): void;
-    getCallers(nodeId: string, limit?: number): Node[];
-    getCallees(nodeId: string, limit?: number): Node[];
-    getImpactRadius(nodeId: string, depth?: number): Node[];
-    getEdgesForNodes(nodeIds: string[]): Edge[];
-    /**
-     * Find files that import (depend on) the given file path.
-     * Used for affected-test traversal.
-     */
-    getDependentFiles(filePath: string): string[];
-    insertUnresolvedRef(sourceId: string, refName: string, refKind: string, filePath: string, line?: number, column?: number): void;
-    deleteUnresolvedRefsByFile(filePath: string): void;
-    /**
-     * Resolve pending references:
-     * - refKind='function': 3-strategy name matching → 'calls' edge
-     * - refKind='import': path-based resolution → 'imports' edge
-     *
-     * Returns the number of edges successfully created.
-     */
-    resolveUnresolvedRefs(): number;
-    /** @deprecated Use resolveUnresolvedRefs() */
-    resolveCallEdges(): number;
-    /**
-     * Resolve a module import path to the ID of the first node in the target file.
-     * Returns null if no indexed file matches.
-     */
-    private resolveImportPath;
-    getNodeContext(nodeId: string): NodeContext | null;
-    getNodeMetrics(nodeId: string): NodeMetrics;
-    /**
-     * Find symbols with no incoming edges (potential dead code).
-     * Excludes exported symbols since they may be consumed externally.
-     */
-    findDeadCode(limit?: number): Node[];
-    /**
-     * Find circular import dependencies using DFS over import edges.
-     * Returns arrays of file paths forming cycles.
-     */
-    findCircularDependencies(): string[][];
-    /**
-     * Find the shortest path between two nodes via directed BFS (outgoing edges only).
-     */
-    findPath(fromId: string, toId: string, maxDepth?: number): Node[];
-    /**
-     * Traverse type hierarchy via 'extends' and 'implements' edges.
-     * direction 'up' = base types, 'down' = derived types, 'both' = all.
-     */
-    getTypeHierarchy(nodeId: string, direction?: 'up' | 'down' | 'both'): Node[];
-    getEmbeddingCount(): number;
-    storeEmbedding(nodeId: string, embedding: Float32Array, model: string): void;
-    getEmbeddedNodeIds(): string[];
-    getAllEmbeddings(): Array<{
-        nodeId: string;
-        embedding: Float32Array;
-    }>;
-    getAllNodes(): import('../types').Node[];
-    /**
-     * Returns embeddable nodes in pages for memory-efficient streaming.
-     * `kinds` filters by node kind (e.g. ['function','method','class']).
-     * Returns an empty array when offset >= total count.
-     */
-    getEmbeddableNodesPaged(kinds: string[], limit: number, offset: number): import('../types').Node[];
-    /** Count of nodes whose kind is in the provided list. */
-    countEmbeddableNodes(kinds: string[]): number;
-    getAllEdges(): Edge[];
-    /**
-     * Find the top-N most-connected nodes by total edge degree (in + out).
-     * Excludes 'contains' edges (structural nesting, not semantic connections).
-     */
-    findHotspots(limit?: number): Array<Node & {
-        degree: number;
-        inDegree: number;
-        outDegree: number;
-    }>;
-    /**
-     * Find surprising cross-file connections: direct edges between nodes in
-     * structurally distant files. Scored by path distance × edge-kind weight.
-     */
-    findSurprisingConnections(limit?: number): Array<{
-        source: Node;
-        target: Node;
-        kind: string;
-        score: number;
-    }>;
-    getStats(): GraphStats;
-    clearArchitecture(): void;
-    upsertArchPackage(pkg: ArchPackage): void;
-    upsertArchLayer(layer: ArchLayer): void;
-    upsertArchFilePackage(filePath: string, packageId: string): void;
-    upsertArchFileLayer(filePath: string, layerId: string, confidence: number, matchedPattern: string): void;
-    upsertArchPackageDep(sourcePkg: string, targetPkg: string, depCount: number, files?: Array<{
-        from: string;
-        to: string;
-    }>): void;
-    upsertArchLayerDep(sourceLayer: string, targetLayer: string, depCount: number): void;
-    upsertArchCoupling(coupling: ArchCoupling): void;
-    getArchPackages(): ArchPackage[];
-    getArchLayers(): ArchLayer[];
-    getArchPackageDeps(): ArchPackageDep[];
-    getArchLayerDeps(): ArchLayerDep[];
-    getArchCoupling(): ArchCoupling[];
-    getArchStats(): {
-        packages: number;
-        layers: number;
-        packageDeps: number;
-    };
-    /**
-     * Return file-to-file import relationships by joining edges + nodes.
-     * Used by ArchitectureAnalyzer to roll up package-level dependencies.
-     */
-    getFileImportPairs(): Array<{
-        sourceFile: string;
-        targetFile: string;
-    }>;
-    getArchFilePackages(): Array<{
-        filePath: string;
-        packageId: string;
-    }>;
-    getArchFileLayers(): Array<{
-        filePath: string;
-        layerId: string;
-        confidence: number;
-        matchedPattern: string;
-    }>;
-    getArchitectureResult(): {
-        packages: ArchPackage[];
-        layers: ArchLayer[];
-        packageDeps: ArchPackageDep[];
-        layerDeps: ArchLayerDep[];
-        coupling: ArchCoupling[];
-    };
-    transaction<T>(fn: () => T): T;
-    close(): void;
-}
-//# sourceMappingURL=database.d.ts.map

package/dist/db/database.d.ts.map

@@ -1 +0,0 @@
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package/dist/docs/formats/asciidoc.d.ts

@@ -1,9 +0,0 @@
-/**
- * AsciiDoc Section Parser
- *
- * Handles: .adoc, .asciidoc
- * Parsing strategy: = heading hierarchy (= Title, == Section, === Subsection)
- */
-import type { DocFormatParser } from '../types';
-export declare const asciidocParser: DocFormatParser;
-//# sourceMappingURL=asciidoc.d.ts.map

package/dist/docs/formats/asciidoc.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"asciidoc.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/asciidoc.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AAiG5E,eAAO,MAAM,cAAc,EAAE,eAS5B,CAAC"}

package/dist/docs/formats/html.d.ts

@@ -1,10 +0,0 @@
-/**
- * HTML Section Parser
- *
- * Handles: .html, .htm
- * Parsing strategy: <h1>–<h6> heading tags.
- * Strips HTML tags from content for summary extraction.
- */
-import type { DocFormatParser } from '../types';
-export declare const htmlParser: DocFormatParser;
-//# sourceMappingURL=html.d.ts.map

package/dist/docs/formats/html.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"html.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/html.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AAyF5E,eAAO,MAAM,UAAU,EAAE,eASxB,CAAC"}

package/dist/docs/formats/index.d.ts

@@ -1,31 +0,0 @@
-/**
- * Documentation Format Registry
- *
- * Maps file extensions to their appropriate parser.
- * New parsers are registered here as they are implemented.
- */
-import type { DocFormatParser, ParseResult } from '../types';
-/**
- * Get the parser for a given file extension.
- * Returns null if no parser is registered for the extension.
- */
-export declare function getParser(filePath: string): DocFormatParser | null;
-/**
- * Parse a documentation file into sections.
- * Returns null if no parser is available for the file format.
- * Supports content-based detection for OpenAPI specs.
- */
-export declare function parseDocFile(content: string, filePath: string): ParseResult | null;
-/**
- * Check if a file extension is supported for documentation parsing.
- */
-export declare function isSupportedDocFormat(filePath: string): boolean;
-/**
- * Get all supported file extensions.
- */
-export declare function getSupportedExtensions(): string[];
-/**
- * Get all registered parser names.
- */
-export declare function getRegisteredParsers(): string[];
-//# sourceMappingURL=index.d.ts.map

package/dist/docs/formats/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,UAAU,CAAC;AAgC7D;;;GAGG;AACH,wBAAgB,SAAS,CAAC,QAAQ,EAAE,MAAM,GAAG,eAAe,GAAG,IAAI,CAGlE;AAED;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAUlF;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAE9D;AAED;;GAEG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,EAAE,CAEjD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,IAAI,MAAM,EAAE,CAE/C"}

package/dist/docs/formats/markdown.d.ts

@@ -1,11 +0,0 @@
-/**
- * Markdown Section Parser
- *
- * Handles: .md, .mdx, .cheatmd
- * Parsing strategy: ATX headings (# Heading) + setext headings (underline with = or -)
- *
- * Correctly ignores headings inside fenced code blocks (``` or ~~~).
- */
-import type { DocFormatParser } from '../types';
-export declare const markdownParser: DocFormatParser;
-//# sourceMappingURL=markdown.d.ts.map

package/dist/docs/formats/markdown.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"markdown.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/markdown.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AA0J5E,eAAO,MAAM,cAAc,EAAE,eAa5B,CAAC"}

package/dist/docs/formats/openapi.d.ts

@@ -1,17 +0,0 @@
-/**
- * OpenAPI/Swagger Section Parser
- *
- * Handles: .yaml, .yml, .json (when detected as OpenAPI spec)
- * Parsing strategy: Operations grouped by tag.
- * Each tag becomes a level-1 section, each operation becomes a level-2 section.
- *
- * Detection: file must contain "openapi:" or "swagger:" (YAML) or
- * "openapi" / "swagger" keys at root level (JSON).
- */
-import type { DocFormatParser } from '../types';
-export declare const openapiParser: DocFormatParser;
-/**
- * Check if a file is an OpenAPI spec (used by the format registry for content-based detection).
- */
-export declare function isOpenAPI(content: string, filePath: string): boolean;
-//# sourceMappingURL=openapi.d.ts.map

package/dist/docs/formats/openapi.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"openapi.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/openapi.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AAoO5E,eAAO,MAAM,aAAa,EAAE,eAa3B,CAAC;AAEF;;GAEG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAEpE"}

package/dist/docs/formats/org.d.ts

@@ -1,9 +0,0 @@
-/**
- * Org-mode Section Parser
- *
- * Handles: .org
- * Parsing strategy: * heading hierarchy (* Title, ** Section, *** Subsection)
- */
-import type { DocFormatParser } from '../types';
-export declare const orgParser: DocFormatParser;
-//# sourceMappingURL=org.d.ts.map

package/dist/docs/formats/org.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"org.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/org.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AAqG5E,eAAO,MAAM,SAAS,EAAE,eASvB,CAAC"}

package/dist/docs/formats/plaintext.d.ts

@@ -1,11 +0,0 @@
-/**
- * Plain Text Section Parser
- *
- * Handles: .txt
- * Parsing strategy: Paragraph-block splitting.
- * Treats blank-line-separated blocks as sections.
- * Lines that are ALL CAPS or followed by a line of dashes are treated as headings.
- */
-import type { DocFormatParser } from '../types';
-export declare const plaintextParser: DocFormatParser;
-//# sourceMappingURL=plaintext.d.ts.map

package/dist/docs/formats/plaintext.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"plaintext.d.ts","sourceRoot":"","sources":["../../../src/docs/formats/plaintext.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,eAAe,EAA8B,MAAM,UAAU,CAAC;AA+G5E,eAAO,MAAM,eAAe,EAAE,eAS7B,CAAC"}