kirograph 0.17.0 → 0.20.0

package/dist/data/types.d.ts

@@ -0,0 +1,103 @@
+/**
+ * KiroGraph Data Module — Type Definitions
+ *
+ * Types for tabular data indexing, profiling, querying, and aggregation.
+ * All populated only when enableData=true in config.
+ */
+export interface DataSet {
+    id: string;
+    filePath: string;
+    format: 'csv' | 'tsv' | 'jsonl' | 'json' | 'xlsx' | 'parquet';
+    rowCount: number;
+    columnCount: number;
+    fileSize: number;
+    contentHash: string;
+    summary: string | null;
+    indexedAt: number;
+}
+export type InferredType = 'string' | 'integer' | 'float' | 'boolean' | 'date' | 'null' | 'mixed';
+export interface DataColumn {
+    id: string;
+    datasetId: string;
+    name: string;
+    position: number;
+    inferredType: InferredType;
+    nullable: boolean;
+    nullCount: number;
+    nullPct: number;
+    cardinality: number;
+    minValue: string | null;
+    maxValue: string | null;
+    meanValue: number | null;
+    sampleValues: string[];
+    summary: string | null;
+    updatedAt: number;
+}
+export interface QueryFilter {
+    column: string;
+    op: 'eq' | 'neq' | 'gt' | 'gte' | 'lt' | 'lte' | 'contains' | 'in' | 'is_null' | 'between';
+    value: any;
+}
+export type AggregateOp = 'count' | 'sum' | 'avg' | 'min' | 'max' | 'count_distinct';
+export interface AggregateMetric {
+    column: string;
+    op: AggregateOp;
+    alias?: string;
+}
+export interface JoinCondition {
+    leftColumn: string;
+    rightColumn: string;
+}
+export type JoinType = 'inner' | 'left' | 'right';
+export interface CorrelationPair {
+    column1: string;
+    column2: string;
+    correlation: number;
+    strength: 'strong' | 'moderate' | 'weak' | 'negligible';
+}
+export type DataRefType = 'reads' | 'writes' | 'imports' | 'configures';
+export interface DataCodeRef {
+    datasetId: string;
+    qualifiedName: string;
+    refType: DataRefType;
+    confidence: number;
+}
+export interface ParsedRow {
+    [column: string]: string | number | boolean | null;
+}
+export interface ParseResult {
+    columns: string[];
+    rows: ParsedRow[];
+    format: string;
+    totalRows: number;
+}
+export interface DataFormatParser {
+    name: string;
+    extensions: string[];
+    /** Check if the optional dependency is available */
+    isAvailable(): boolean;
+    /** Parse a file, yielding rows in batches via callback */
+    parse(filePath: string, opts: {
+        maxRows: number;
+        onBatch: (rows: ParsedRow[], columns: string[]) => void;
+    }): Promise<{
+        columns: string[];
+        totalRows: number;
+    }>;
+}
+export interface DataIndexResult {
+    datasetsIndexed: number;
+    rowsIndexed: number;
+    columnsProfiled: number;
+    errors: string[];
+    duration: number;
+}
+export interface ColumnQuality {
+    column: string;
+    riskScore: number;
+    nullRisk: number;
+    cardinalityRisk: number;
+    typeRisk: number;
+    issues: string[];
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/data/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/db/database.d.ts

@@ -9,6 +9,35 @@ export declare class GraphDatabase {
     private projectRoot;
     constructor(projectRoot: string);
     private applySchema;
+    /**
+     * Apply memory schema tables. Called when enableMemory is true.
+     * Safe to call multiple times (CREATE IF NOT EXISTS).
+     */
+    applyMemorySchema(): void;
+    /**
+     * Apply docs schema tables. Called when enableDocs is true.
+     * Safe to call multiple times (CREATE IF NOT EXISTS).
+     */
+    applyDocsSchema(): void;
+    /**
+     * Apply data schema tables. Called when enableData is true.
+     * Safe to call multiple times (CREATE IF NOT EXISTS).
+     */
+    applyDataSchema(): void;
+    /**
+     * Apply patterns schema tables. Called when enablePatterns is true.
+     * Safe to call multiple times (CREATE IF NOT EXISTS).
+     */
+    applyPatternsSchema(): void;
+    /**
+     * Apply security schema tables. Called when enableSecurity is true.
+     * Safe to call multiple times (CREATE IF NOT EXISTS).
+     */
+    applySecuritySchema(): void;
+    /**
+     * Get the raw database handle (for MemoryDatabase).
+     */
+    getRawDb(): any;
     private runMigrations;
     upsertFile(record: FileRecord): void;
     getFile(filePath: string): FileRecord | null;
@@ -80,6 +109,34 @@ export declare class GraphDatabase {
         embedding: Float32Array;
     }>;
     getAllNodes(): import('../types').Node[];
+    /**
+     * Returns embeddable nodes in pages for memory-efficient streaming.
+     * `kinds` filters by node kind (e.g. ['function','method','class']).
+     * Returns an empty array when offset >= total count.
+     */
+    getEmbeddableNodesPaged(kinds: string[], limit: number, offset: number): import('../types').Node[];
+    /** Count of nodes whose kind is in the provided list. */
+    countEmbeddableNodes(kinds: string[]): number;
+    getAllEdges(): Edge[];
+    /**
+     * Find the top-N most-connected nodes by total edge degree (in + out).
+     * Excludes 'contains' edges (structural nesting, not semantic connections).
+     */
+    findHotspots(limit?: number): Array<Node & {
+        degree: number;
+        inDegree: number;
+        outDegree: number;
+    }>;
+    /**
+     * Find surprising cross-file connections: direct edges between nodes in
+     * structurally distant files. Scored by path distance × edge-kind weight.
+     */
+    findSurprisingConnections(limit?: number): Array<{
+        source: Node;
+        target: Node;
+        kind: string;
+        score: number;
+    }>;
     getStats(): GraphStats;
     clearArchitecture(): void;
     upsertArchPackage(pkg: ArchPackage): void;

package/dist/db/database.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"database.d.ts","sourceRoot":"","sources":["../../src/db/database.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAIH,OAAO,KAAK,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,QAAQ,EAAY,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAChI,OAAO,KAAK,EAAE,WAAW,EAAE,SAAS,EAAE,cAAc,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AAOhH,qBAAa,aAAa;IACxB,OAAO,CAAC,EAAE,CAAM;IAChB,OAAO,CAAC,WAAW,CAAS;gBAEhB,WAAW,EAAE,MAAM;IAgC/B,OAAO,CAAC,WAAW;IAOnB;;;OAGG;IACH,iBAAiB,IAAI,IAAI;IAQzB;;;OAGG;IACH,eAAe,IAAI,IAAI;IAQvB;;;OAGG;IACH,eAAe,IAAI,IAAI;IAQvB;;;OAGG;IACH,mBAAmB,IAAI,IAAI;IAY3B;;;OAGG;IACH,mBAAmB,IAAI,IAAI;IA0B3B;;OAEG;IACH,QAAQ,IAAI,GAAG;IAIf,OAAO,CAAC,aAAa;IAmCrB,UAAU,CAAC,MAAM,EAAE,UAAU,GAAG,IAAI;IAQpC,OAAO,CAAC,QAAQ,EAAE,MAAM,GAAG,UAAU,GAAG,IAAI;IAK5C,WAAW,IAAI,UAAU,EAAE;IAI3B,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;IAMlC,OAAO,CAAC,SAAS;IAajB,UAAU,CAAC,IAAI,EAAE,IAAI,GAAG,IAAI;IA4B5B,OAAO,CAAC,EAAE,EAAE,MAAM,GAAG,IAAI,GAAG,IAAI;IAKhC,cAAc,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,EAAE;IAIxC,cAAc,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,GAAG,IAAI,EAAE;IAI1C,oBAAoB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,QAAQ,EAAE,EAAE,KAAK,SAAK,GAAG,IAAI,EAAE;IAc1E,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,GAAE,aAAkB,GAAG,IAAI,EAAE;IAuC5D,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE,aAAkB,GAAG,IAAI,EAAE;IAsBjE,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;IASzC,OAAO,CAAC,SAAS;IA2BjB,UAAU,CAAC,IAAI,EAAE,IAAI,GAAG,IAAI;IAQ5B,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,IAAI,EAAE;IAU9C,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,SAAK,GAAG,IAAI,EAAE;IAU9C,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,SAAI,GAAG,IAAI,EAAE;IA0BlD,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE;IAgB3C;;;OAGG;IACH,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE;IAmB7C,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,IAAI;IAQ/H,0BAA0B,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;IAIlD;;;;;;OAMG;IACH,qBAAqB,IAAI,MAAM;IA2D/B,8CAA8C;IAC9C,gBAAgB,IAAI,MAAM;IAI1B;;;OAGG;IACH,OAAO,CAAC,iBAAiB;IAoCzB,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI;IAwBlD,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,WAAW;IAW3C;;;OAGG;IACH,YAAY,CAAC,KAAK,SAAK,GAAG,IAAI,EAAE;IAWhC;;;OAGG;IACH,wBAAwB,IAAI,MAAM,EAAE,EAAE;IA6CtC;;OAEG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,SAAK,GAAG,IAAI,EAAE;IAkD7D;;;OAGG;IACH,gBAAgB,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,GAAE,IAAI,GAAG,MAAM,GAAG,MAAe,GAAG,IAAI,EAAE;IAyCpF,iBAAiB,IAAI,MAAM;IAS3B,cAAc,CAAC,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI;IAQ5E,kBAAkB,IAAI,MAAM,EAAE;IAI9B,gBAAgB,IAAI,KAAK,CAAC;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,YAAY,CAAA;KAAE,CAAC;IAYtE,WAAW,IAAI,OAAO,UAAU,EAAE,IAAI,EAAE;IAIxC;;;;OAIG;IACH,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,UAAU,EAAE,IAAI,EAAE;IASlG,yDAAyD;IACzD,oBAAoB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM;IAO7C,WAAW,IAAI,IAAI,EAAE;IAQrB;;;OAGG;IACH,YAAY,CAAC,KAAK,SAAK,GAAG,KAAK,CAAC,IAAI,GAAG;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC;IAmB/F;;;OAGG;IACH,yBAAyB,CAAC,KAAK,SAAK,GAAG,KAAK,CAAC;QAAE,MAAM,EAAE,IAAI,CAAC;QAAC,MAAM,EAAE,IAAI,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;IAuDzG,QAAQ,IAAI,UAAU;IAmBtB,iBAAiB,IAAI,IAAI;IAUzB,iBAAiB,CAAC,GAAG,EAAE,WAAW,GAAG,IAAI;IAezC,eAAe,CAAC,KAAK,EAAE,SAAS,GAAG,IAAI;IAavC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,IAAI;IAOhE,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,GAAG,IAAI;IAQxG,oBAAoB,CAAC,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,GAAG,IAAI;IAQ/H,kBAAkB,CAAC,WAAW,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAQpF,kBAAkB,CAAC,QAAQ,EAAE,YAAY,GAAG,IAAI;IAQhD,eAAe,IAAI,WAAW,EAAE;IAehC,aAAa,IAAI,SAAS,EAAE;IAW5B,kBAAkB,IAAI,cAAc,EAAE;IAStC,gBAAgB,IAAI,YAAY,EAAE;IAQlC,eAAe,IAAI,YAAY,EAAE;IAUjC,YAAY,IAAI;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE;IAQzE;;;OAGG;IACH,kBAAkB,IAAI,KAAK,CAAC;QAAE,UAAU,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC;IAUvE,mBAAmB,IAAI,KAAK,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC;IAKrE,iBAAiB,IAAI,KAAK,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,UAAU,EAAE,MAAM,CAAC;QAAC,cAAc,EAAE,MAAM,CAAA;KAAE,CAAC;IAU7G,qBAAqB,IAAI;QACvB,QAAQ,EAAE,WAAW,EAAE,CAAC;QACxB,MAAM,EAAE,SAAS,EAAE,CAAC;QACpB,WAAW,EAAE,cAAc,EAAE,CAAC;QAC9B,SAAS,EAAE,YAAY,EAAE,CAAC;QAC1B,QAAQ,EAAE,YAAY,EAAE,CAAC;KAC1B;IAYD,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,MAAM,CAAC,GAAG,CAAC;IAY9B,KAAK,IAAI,IAAI;CAGd"}

package/dist/db/database.js

@@ -100,6 +100,58 @@ Or delete the lock manually: ${lockPath}`
       this.db.exec(sql);
     }
   }
+  /**
+   * Apply patterns schema tables. Called when enablePatterns is true.
+   * Safe to call multiple times (CREATE IF NOT EXISTS).
+   */
+  applyPatternsSchema() {
+    const schemaPath = path.join(__dirname, "../db/patterns-schema.sql");
+    if (fs.existsSync(schemaPath)) {
+      const sql = fs.readFileSync(schemaPath, "utf8");
+      this.db.exec(sql);
+    }
+    const tryAlter = (stmt) => {
+      try {
+        this.db.run(stmt);
+      } catch {
+      }
+    };
+    tryAlter("ALTER TABLE pattern_matches ADD COLUMN symbol_node_id TEXT");
+    tryAlter("CREATE INDEX IF NOT EXISTS idx_pm_symbol ON pattern_matches(symbol_node_id)");
+  }
+  /**
+   * Apply security schema tables. Called when enableSecurity is true.
+   * Safe to call multiple times (CREATE IF NOT EXISTS).
+   */
+  applySecuritySchema() {
+    const schemaPath = path.join(__dirname, "../db/security-schema.sql");
+    if (fs.existsSync(schemaPath)) {
+      const sql = fs.readFileSync(schemaPath, "utf8");
+      this.db.exec(sql);
+    }
+    const tryAlter = (stmt) => {
+      try {
+        this.db.run(stmt);
+      } catch {
+      }
+    };
+    tryAlter("ALTER TABLE sec_dependencies ADD COLUMN license TEXT");
+    tryAlter("ALTER TABLE sec_dependencies ADD COLUMN latest_version TEXT");
+    tryAlter("ALTER TABLE sec_dependencies ADD COLUMN latest_published INTEGER");
+    tryAlter("ALTER TABLE sec_dependencies ADD COLUMN staleness_score REAL");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN epss_score REAL");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN epss_percentile REAL");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN epss_fetched_at INTEGER");
+    tryAlter("CREATE INDEX IF NOT EXISTS idx_sec_deps_license ON sec_dependencies(license)");
+    tryAlter("CREATE INDEX IF NOT EXISTS idx_sec_deps_staleness ON sec_dependencies(staleness_score)");
+    tryAlter("CREATE INDEX IF NOT EXISTS idx_sec_vulns_epss ON sec_vulnerabilities(epss_score)");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN risk_score REAL");
+    tryAlter("CREATE INDEX IF NOT EXISTS idx_sec_vulns_risk ON sec_vulnerabilities(risk_score)");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN first_detected_at INTEGER");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN fix_available_since INTEGER");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN suppressed_at INTEGER");
+    tryAlter("ALTER TABLE sec_vulnerabilities ADD COLUMN remediated_at INTEGER");
+  }
   /**
    * Get the raw database handle (for MemoryDatabase).
    */
@@ -119,6 +171,14 @@ Or delete the lock manually: ${lockPath}`
       this.db.run("ALTER TABLE unresolved_refs ADD COLUMN attempted_strategies TEXT");
     } catch {
     }
+    try {
+      this.db.run("ALTER TABLE edges ADD COLUMN confidence TEXT NOT NULL DEFAULT 'extracted'");
+    } catch {
+    }
+    try {
+      this.db.run("ALTER TABLE edges ADD COLUMN confidence_score REAL NOT NULL DEFAULT 1.0");
+    } catch {
+    }
   }
   // ── Files ──────────────────────────────────────────────────────────────────
   upsertFile(record) {
@@ -290,9 +350,9 @@ Or delete the lock manually: ${lockPath}`
   // ── Edges ──────────────────────────────────────────────────────────────────
   insertEdge(edge) {
     this.db.run(
-      `INSERT OR IGNORE INTO edges (source, target, kind, metadata, line, column)
-       VALUES (?, ?, ?, ?, ?, ?)`,
-      [edge.source, edge.target, edge.kind, edge.metadata ? JSON.stringify(edge.metadata) : null, edge.line ?? null, edge.column ?? null]
+      `INSERT OR IGNORE INTO edges (source, target, kind, metadata, line, column, confidence, confidence_score)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?)`,
+      [edge.source, edge.target, edge.kind, edge.metadata ? JSON.stringify(edge.metadata) : null, edge.line ?? null, edge.column ?? null, edge.confidence ?? "extracted", edge.confidenceScore ?? 1]
     );
   }
   getCallers(nodeId, limit = 30) {
@@ -395,6 +455,8 @@ Or delete the lock manually: ${lockPath}`
       const { id: refId, source_id: sourceId, ref_name: refName, ref_kind: refKind, file_path: filePath, line, column } = ref;
       if (refKind === "function") {
         let target = this.db.get("SELECT id FROM nodes WHERE name = ? LIMIT 1", [refName]);
+        let confidence = "inferred";
+        let confidenceScore = 1;
         if (!target) {
           target = this.db.get(
             `SELECT id FROM nodes WHERE qualified_name LIKE ? LIMIT 1`,
@@ -406,16 +468,24 @@ Or delete the lock manually: ${lockPath}`
             "SELECT id FROM nodes WHERE lower(name) = lower(?) LIMIT 1",
             [refName]
           );
+          if (target) confidenceScore = 0.8;
+        }
+        if (target) {
+          const candidateCount = this.db.get("SELECT COUNT(*) as cnt FROM nodes WHERE name = ?", [refName]);
+          if (candidateCount && candidateCount.cnt > 1) {
+            confidence = "ambiguous";
+            confidenceScore = 1 / candidateCount.cnt;
+          }
         }
         if (target) {
-          this.insertEdge({ source: sourceId, target: target.id, kind: "calls", line: line ?? void 0, column: column ?? void 0 });
+          this.insertEdge({ source: sourceId, target: target.id, kind: "calls", line: line ?? void 0, column: column ?? void 0, confidence, confidenceScore });
           this.db.run("DELETE FROM unresolved_refs WHERE id = ?", [refId]);
           resolved++;
         }
       } else if (refKind === "import") {
         const targetFileNode = this.resolveImportPath(refName, filePath);
         if (targetFileNode) {
-          this.insertEdge({ source: sourceId, target: targetFileNode, kind: "imports", line: line ?? void 0, column: column ?? void 0 });
+          this.insertEdge({ source: sourceId, target: targetFileNode, kind: "imports", line: line ?? void 0, column: column ?? void 0, confidence: "inferred", confidenceScore: 1 });
           this.db.run("DELETE FROM unresolved_refs WHERE id = ?", [refId]);
           resolved++;
         }