kirograph 0.17.0 → 0.20.0

package/dist/core/pipeline.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/core/pipeline.ts"],
-  "sourcesContent": ["/**\n * IndexPipeline \u2014 full-index and incremental-sync pipelines.\n *\n * Owns the two heavy workflows:\n *   - indexAll(): scan all files, extract, store, resolve, detect frameworks,\n *                 generate embeddings, analyze architecture.\n *   - sync():     detect changed files via git (or full scan fallback),\n *                 re-extract only what changed, then run the same tail pipeline.\n *\n * Everything that touches the filesystem or sub-systems is injected via the\n * constructor, keeping this class testable and free of global state.\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { GraphDatabase } from '../db/database';\nimport { scanDirectory, hashContent, getChangedFiles, shouldIncludeFile } from '../sync/index';\nimport { extractFile } from '../extraction/extractor';\nimport { clearParserCache, initGrammars, hasWasmGrammar } from '../extraction/grammars';\nimport { detectFrameworks } from '../frameworks/index';\nimport { ReferenceResolver } from '../resolution/index';\nimport { VectorManager } from '../vectors/index';\nimport { ArchitectureAnalyzer } from '../architecture/index';\nimport type { KiroGraphConfig } from '../config';\nimport type { IndexResult, IndexProgress, SyncResult } from '../types';\nimport { LockManager } from './lock-manager';\nimport { Mutex } from '../utils';\n\nconst FILE_IO_BATCH_SIZE = 10;\n\nexport class IndexPipeline {\n  private readonly mutex = new Mutex();\n\n  constructor(\n    private readonly db: GraphDatabase,\n    private readonly vectors: VectorManager,\n    private readonly resolver: ReferenceResolver,\n    private readonly arch: ArchitectureAnalyzer,\n    private readonly lock: LockManager,\n    private readonly config: KiroGraphConfig,\n    private readonly projectRoot: string,\n  ) {}\n\n  async indexAll(opts?: {\n    onProgress?: (p: IndexProgress) => void;\n    force?: boolean;\n    signal?: AbortSignal;\n  }): Promise<IndexResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const errors: string[] = [];\n    let filesIndexed = 0;\n    let nodesCreated = 0;\n    let edgesCreated = 0;\n\n    // Track languages whose WASM parser is currently poisoned (ABORT=true on the module).\n    // Once a language's parser aborts, every subsequent parse call for that language\n    // fails instantly. We skip those files until clearParserCache + initGrammars succeeds.\n    const poisonedLanguages = new Set<string>();\n\n    try {\n      const files = await scanDirectory(this.projectRoot, this.config, opts?.signal);\n      opts?.onProgress?.({ phase: 'scanning', current: files.length, total: files.length });\n\n      // Batch-read files in parallel\n      const contentMap = new Map<string, Buffer>();\n      for (let b = 0; b < files.length; b += FILE_IO_BATCH_SIZE) {\n        const batch = files.slice(b, b + FILE_IO_BATCH_SIZE);\n        const results = await Promise.all(batch.map(f => fs.promises.readFile(f).catch(() => null)));\n        for (let i = 0; i < batch.length; i++) {\n          if (results[i]) contentMap.set(batch[i], results[i]!);\n        }\n      }\n\n      for (let i = 0; i < files.length; i++) {\n        const file = files[i];\n        opts?.onProgress?.({ phase: 'parsing', current: i + 1, total: files.length, currentFile: file });\n\n        try {\n          const content = contentMap.get(file);\n          if (!content) continue;\n          if (content.length > this.config.maxFileSize) continue;\n\n          const relPath = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n\n          if (!opts?.force) {\n            const existing = this.db.getFile(relPath);\n            if (existing && hashContent(content) === existing.contentHash) continue;\n          }\n\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot, content);\n          if (!extracted) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          filesIndexed++;\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            // Mark the language as poisoned so we skip remaining files of this language\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              // Recovery succeeded \u2014 un-poison all languages\n              poisonedLanguages.clear();\n            } catch {\n              errors.push('WASM runtime unrecoverable after crash \u2014 aborting batch');\n              break;\n            }\n          }\n        }\n      }\n\n      // Re-process files that have symbolCount=0 but should have symbols (WASM recovery)\n      const emptyFiles = this.db.getAllFiles().filter(\n        (f: any) => f.symbolCount === 0 && hasWasmGrammar(f.language)\n      );\n      if (emptyFiles.length > 0) {\n        opts?.onProgress?.({ phase: 'retrying', current: 0, total: emptyFiles.length });\n        for (let i = 0; i < emptyFiles.length; i++) {\n          const ef = emptyFiles[i];\n          const absPath = path.join(this.projectRoot, ef.path);\n          opts?.onProgress?.({ phase: 'retrying', current: i + 1, total: emptyFiles.length, currentFile: absPath });\n          try {\n            const extracted = await extractFile(absPath, this.projectRoot);\n            if (!extracted || extracted.nodes.length === 0) continue;\n\n            const oldNodes = this.db.getNodesByFile(extracted.filePath);\n            if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n            this.db.transaction(() => {\n              this.db.deleteNodesByFile(extracted.filePath);\n              this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n              this.db.upsertFile({\n                path: extracted.filePath,\n                contentHash: extracted.contentHash,\n                language: extracted.language,\n                fileSize: extracted.fileSize,\n                symbolCount: extracted.nodes.length,\n                indexedAt: Date.now(),\n              });\n              for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n              for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n              for (const ref of extracted.unresolvedRefs) {\n                this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n              }\n            });\n            filesIndexed++;\n          } catch {\n            // Already logged in first pass or genuinely broken \u2014 skip\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      opts?.onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        opts?.onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      // Detect frameworks\n      opts?.onProgress?.({ phase: 'detecting frameworks', current: 0, total: 1 });\n      const detectedFrameworks = await detectFrameworks(this.projectRoot, this.db);\n      const languages = [...new Set(this.db.getAllFiles().map(f => (f as any).language).filter(Boolean))];\n      opts?.onProgress?.({\n        phase: 'detecting frameworks', current: 1, total: 1,\n        meta: { frameworks: detectedFrameworks.map(f => f.name), languages },\n      });\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        opts?.onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          opts?.onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        opts?.onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            force: opts?.force,\n            onProgress: msg => opts?.onProgress?.({ phase: 'docs', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      // Index data files (if enabled)\n      if ((this.config as any).enableData) {\n        try {\n          const { DataIndexer } = await Promise.resolve().then(() => require('../data/indexer.js'));\n          this.db.applyDataSchema();\n          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await dataIndexer.indexAll({\n            onProgress: msg => opts?.onProgress?.({ phase: 'data', current: 0, total: 1, meta: { msg } }),\n          });\n\n          // Assign data files to 'data' architecture layer if architecture is enabled\n          if (this.config.enableArchitecture) {\n            try {\n              const rawDb = this.db.getRawDb();\n              // Check if arch_file_layers table exists\n              const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      return { success: errors.length === 0, filesIndexed, nodesCreated, edgesCreated, errors, duration: Date.now() - start };\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n\n  async sync(opts?: {\n    changedFiles?: string[];\n    onProgress?: (p: IndexProgress) => void;\n  }): Promise<SyncResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const changedFiles = opts?.changedFiles;\n    const onProgress = opts?.onProgress;\n    const result: SyncResult = {\n      added: [], modified: [], removed: [],\n      nodesCreated: 0, nodesUpdated: 0, nodesRemoved: 0,\n      edgesCreated: 0, edgesRemoved: 0,\n      filesScanned: 0, errors: [], duration: 0,\n    };\n\n    try {\n      const removeFile = async (rel: string) => {\n        const oldNodes = this.db.getNodesByFile(rel);\n        const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n        result.nodesRemoved += oldNodes.length;\n        result.edgesRemoved += oldEdgeCount;\n        await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n        this.db.deleteFile(rel);\n        this.db.deleteUnresolvedRefsByFile(rel);\n        result.removed.push(rel);\n      };\n\n      // \u2500\u2500 Exclude-rule cleanup \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n      // Remove any indexed files that now match the current exclude patterns.\n      // This handles the case where a user adds a new exclude pattern (e.g.\n      // \"**/.vite/**\") and expects those files to disappear from the index on\n      // the next sync without needing a full --force re-index.\n      const allIndexed = this.db.getAllFiles();\n      for (const f of allIndexed) {\n        if (!shouldIncludeFile(f.path, this.config)) {\n          onProgress?.({ phase: 'scanning', current: 0, total: 0, meta: { excludeCleanup: true, file: f.path } });\n          await removeFile(f.path);\n        }\n      }\n\n      let filesToProcess: string[];\n\n      onProgress?.({ phase: 'scanning', current: 0, total: 0 });\n\n      if (changedFiles) {\n        filesToProcess = changedFiles.map(f => path.resolve(this.projectRoot, f));\n      } else {\n        const gitChanged = await getChangedFiles(this.projectRoot, this.config);\n        const hasChanges = gitChanged.added.length > 0 || gitChanged.modified.length > 0 || gitChanged.removed.length > 0;\n\n        if (hasChanges) {\n          for (const p of gitChanged.removed) {\n            await removeFile(path.relative(this.projectRoot, p).replace(/\\\\/g, '/'));\n          }\n          filesToProcess = [...gitChanged.added, ...gitChanged.modified];\n        } else {\n          // Fallback: full scan + detect removed files\n          const indexed = new Set(this.db.getAllFiles().map(f => f.path));\n          const current = new Set(\n            (await scanDirectory(this.projectRoot, this.config))\n              .map(f => path.relative(this.projectRoot, f).replace(/\\\\/g, '/'))\n          );\n          result.filesScanned = current.size;\n          for (const p of indexed) {\n            if (!current.has(p)) await removeFile(p);\n          }\n          filesToProcess = await scanDirectory(this.projectRoot, this.config);\n        }\n      }\n\n      result.filesScanned = result.filesScanned || filesToProcess.length;\n      onProgress?.({ phase: 'scanning', current: result.filesScanned, total: result.filesScanned });\n\n      const poisonedLanguages = new Set<string>();\n\n      for (let i = 0; i < filesToProcess.length; i++) {\n        const file = filesToProcess[i];\n        onProgress?.({ phase: 'parsing', current: i + 1, total: filesToProcess.length, currentFile: file });\n\n        if (!fs.existsSync(file)) {\n          const rel = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n          await removeFile(rel);\n          continue;\n        }\n\n        try {\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot);\n          if (!extracted) continue;\n\n          const existing = this.db.getFile(extracted.filePath);\n          const isNew = !existing;\n          if (!isNew && existing!.contentHash === extracted.contentHash) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n          await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            result.nodesRemoved += oldNodes.length;\n            result.edgesRemoved += oldEdgeCount;\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); result.nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); result.edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          this.resolver.invalidateFile(extracted.filePath);\n          if (isNew) result.added.push(extracted.filePath);\n          else { result.modified.push(extracted.filePath); result.nodesUpdated += extracted.nodes.length; }\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          result.errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              poisonedLanguages.clear();\n            } catch {\n              result.errors.push('WASM runtime unrecoverable after crash \u2014 aborting sync');\n              break;\n            }\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      await detectFrameworks(this.projectRoot);\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled)\n      if (this.config.enableArchitecture) {\n        onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Re-index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'docs', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      // Re-index data files (if enabled)\n      if ((this.config as any).enableData) {\n        try {\n          const { DataIndexer } = await Promise.resolve().then(() => require('../data/indexer.js'));\n          this.db.applyDataSchema();\n          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await dataIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'data', current: 0, total: 1, meta: { msg } }),\n          });\n\n          // Assign data files to 'data' architecture layer if architecture is enabled\n          if (this.config.enableArchitecture) {\n            try {\n              const rawDb = this.db.getRawDb();\n              const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      result.duration = Date.now() - start;\n      return result;\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n}\n"],
-  "mappings": 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+  "sourcesContent": ["/**\n * IndexPipeline \u2014 full-index and incremental-sync pipelines.\n *\n * Owns the two heavy workflows:\n *   - indexAll(): scan all files, extract, store, resolve, detect frameworks,\n *                 generate embeddings, analyze architecture.\n *   - sync():     detect changed files via git (or full scan fallback),\n *                 re-extract only what changed, then run the same tail pipeline.\n *\n * Everything that touches the filesystem or sub-systems is injected via the\n * constructor, keeping this class testable and free of global state.\n */\n\nimport * as path from 'path';\nimport * as fs from 'fs';\nimport { GraphDatabase } from '../db/database';\nimport { scanDirectory, hashContent, getChangedFiles, shouldIncludeFile } from '../sync/index';\nimport { extractFile } from '../extraction/extractor';\nimport { clearParserCache, initGrammars, hasWasmGrammar } from '../extraction/grammars';\nimport { detectFrameworks } from '../frameworks/index';\nimport { ReferenceResolver } from '../resolution/index';\nimport { VectorManager } from '../vectors/index';\nimport { ArchitectureAnalyzer } from '../architecture/index';\nimport type { KiroGraphConfig } from '../config';\nimport type { IndexResult, IndexProgress, SyncResult } from '../types';\nimport { LockManager } from './lock-manager';\nimport { Mutex } from '../utils';\n\nconst FILE_IO_BATCH_SIZE = 10;\n\nexport class IndexPipeline {\n  private readonly mutex = new Mutex();\n\n  constructor(\n    private readonly db: GraphDatabase,\n    private readonly vectors: VectorManager,\n    private readonly resolver: ReferenceResolver,\n    private readonly arch: ArchitectureAnalyzer,\n    private readonly lock: LockManager,\n    private readonly config: KiroGraphConfig,\n    private readonly projectRoot: string,\n  ) {}\n\n  async indexAll(opts?: {\n    onProgress?: (p: IndexProgress) => void;\n    force?: boolean;\n    signal?: AbortSignal;\n  }): Promise<IndexResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const errors: string[] = [];\n    let filesIndexed = 0;\n    let nodesCreated = 0;\n    let edgesCreated = 0;\n\n    // Track languages whose WASM parser is currently poisoned (ABORT=true on the module).\n    // Once a language's parser aborts, every subsequent parse call for that language\n    // fails instantly. We skip those files until clearParserCache + initGrammars succeeds.\n    const poisonedLanguages = new Set<string>();\n\n    try {\n      const files = await scanDirectory(this.projectRoot, this.config, opts?.signal);\n      opts?.onProgress?.({ phase: 'scanning', current: files.length, total: files.length });\n\n      // Batch-read files in parallel\n      const contentMap = new Map<string, Buffer>();\n      for (let b = 0; b < files.length; b += FILE_IO_BATCH_SIZE) {\n        const batch = files.slice(b, b + FILE_IO_BATCH_SIZE);\n        const results = await Promise.all(batch.map(f => fs.promises.readFile(f).catch(() => null)));\n        for (let i = 0; i < batch.length; i++) {\n          if (results[i]) contentMap.set(batch[i], results[i]!);\n        }\n      }\n\n      for (let i = 0; i < files.length; i++) {\n        const file = files[i];\n        opts?.onProgress?.({ phase: 'parsing', current: i + 1, total: files.length, currentFile: file });\n\n        try {\n          const content = contentMap.get(file);\n          if (!content) continue;\n          if (content.length > this.config.maxFileSize) continue;\n\n          const relPath = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n\n          if (!opts?.force) {\n            const existing = this.db.getFile(relPath);\n            if (existing && hashContent(content) === existing.contentHash) continue;\n          }\n\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot, content);\n          if (!extracted) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          filesIndexed++;\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            // Mark the language as poisoned so we skip remaining files of this language\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              // Recovery succeeded \u2014 un-poison all languages\n              poisonedLanguages.clear();\n            } catch {\n              errors.push('WASM runtime unrecoverable after crash \u2014 aborting batch');\n              break;\n            }\n          }\n        }\n      }\n\n      // Re-process files that have symbolCount=0 but should have symbols (WASM recovery)\n      const emptyFiles = this.db.getAllFiles().filter(\n        (f: any) => f.symbolCount === 0 && hasWasmGrammar(f.language)\n      );\n      if (emptyFiles.length > 0) {\n        opts?.onProgress?.({ phase: 'retrying', current: 0, total: emptyFiles.length });\n        for (let i = 0; i < emptyFiles.length; i++) {\n          const ef = emptyFiles[i];\n          const absPath = path.join(this.projectRoot, ef.path);\n          opts?.onProgress?.({ phase: 'retrying', current: i + 1, total: emptyFiles.length, currentFile: absPath });\n          try {\n            const extracted = await extractFile(absPath, this.projectRoot);\n            if (!extracted || extracted.nodes.length === 0) continue;\n\n            const oldNodes = this.db.getNodesByFile(extracted.filePath);\n            if (oldNodes.length > 0) await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n            this.db.transaction(() => {\n              this.db.deleteNodesByFile(extracted.filePath);\n              this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n              this.db.upsertFile({\n                path: extracted.filePath,\n                contentHash: extracted.contentHash,\n                language: extracted.language,\n                fileSize: extracted.fileSize,\n                symbolCount: extracted.nodes.length,\n                indexedAt: Date.now(),\n              });\n              for (const node of extracted.nodes) { this.db.upsertNode(node); nodesCreated++; }\n              for (const edge of extracted.edges) { this.db.insertEdge(edge); edgesCreated++; }\n              for (const ref of extracted.unresolvedRefs) {\n                this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n              }\n            });\n            filesIndexed++;\n          } catch {\n            // Already logged in first pass or genuinely broken \u2014 skip\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      opts?.onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        opts?.onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      // Detect frameworks\n      opts?.onProgress?.({ phase: 'detecting frameworks', current: 0, total: 1 });\n      const detectedFrameworks = await detectFrameworks(this.projectRoot, this.db);\n      const languages = [...new Set(this.db.getAllFiles().map(f => (f as any).language).filter(Boolean))];\n      opts?.onProgress?.({\n        phase: 'detecting frameworks', current: 1, total: 1,\n        meta: { frameworks: detectedFrameworks.map(f => f.name), languages },\n      });\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        opts?.onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          opts?.onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled, or auto-enabled for security)\n      if (this.config.enableArchitecture || this.config.enableSecurity) {\n        if (this.config.enableSecurity && !this.config.enableArchitecture) {\n          const { logWarn } = await Promise.resolve().then(() => require('../errors.js'));\n          logWarn('enableSecurity requires enableArchitecture \u2014 auto-enabling architecture analysis for this run');\n        }\n        opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          opts?.onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        opts?.onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Run security analysis (if enabled)\n      if (this.config.enableSecurity) {\n        try {\n          const { SecurityPipeline } = await Promise.resolve().then(() => require('../security/pipeline.js'));\n          this.db.applySecuritySchema();\n          const secPipeline = new SecurityPipeline(this.db, this.config, this.projectRoot);\n          opts?.onProgress?.({ phase: 'security', current: 0, total: 1 });\n          await secPipeline.run((phase, current, total) =>\n            opts?.onProgress?.({ phase: 'security', current, total, meta: { secPhase: phase } })\n          );\n          opts?.onProgress?.({ phase: 'security', current: 1, total: 1 });\n        } catch { /* security analysis is non-critical */ }\n      }\n\n      // Index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            force: opts?.force,\n            onProgress: msg => opts?.onProgress?.({ phase: 'docs', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      // Index data files (if enabled)\n      if ((this.config as any).enableData) {\n        try {\n          const { DataIndexer } = await Promise.resolve().then(() => require('../data/indexer.js'));\n          this.db.applyDataSchema();\n          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await dataIndexer.indexAll({\n            onProgress: msg => opts?.onProgress?.({ phase: 'data', current: 0, total: 1, meta: { msg } }),\n          });\n\n          // Assign data files to 'data' architecture layer if architecture is enabled\n          if (this.config.enableArchitecture) {\n            try {\n              const rawDb = this.db.getRawDb();\n              // Check if arch_file_layers table exists\n              const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      // Index pattern matches (if enabled)\n      if ((this.config as any).enablePatterns) {\n        try {\n          this.db.applyPatternsSchema();\n          const { PatternIndexer } = await Promise.resolve().then(() => require('../patterns/indexer.js'));\n          const indexer = new PatternIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await indexer.indexAll((phase, current, total) => {\n            opts?.onProgress?.({ phase: 'patterns' as any, current, total });\n          });\n        } catch (err) {\n          // Patterns are non-critical \u2014 log and continue\n          const { logWarn } = await Promise.resolve().then(() => require('../errors.js'));\n          const msg = err instanceof Error ? err.message : String(err);\n          logWarn(`[patterns] Pattern indexing failed (non-critical): ${msg}`);\n        }\n      }\n\n      this.lock.clearDirty();\n      return { success: errors.length === 0, filesIndexed, nodesCreated, edgesCreated, errors, duration: Date.now() - start };\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n\n  async sync(opts?: {\n    changedFiles?: string[];\n    onProgress?: (p: IndexProgress) => void;\n  }): Promise<SyncResult> {\n    const release = await this.mutex.acquire();\n    this.lock.acquire();\n    const start = Date.now();\n    const changedFiles = opts?.changedFiles;\n    const onProgress = opts?.onProgress;\n    const result: SyncResult = {\n      added: [], modified: [], removed: [],\n      nodesCreated: 0, nodesUpdated: 0, nodesRemoved: 0,\n      edgesCreated: 0, edgesRemoved: 0,\n      filesScanned: 0, errors: [], duration: 0,\n    };\n\n    try {\n      const removeFile = async (rel: string) => {\n        const oldNodes = this.db.getNodesByFile(rel);\n        const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n        result.nodesRemoved += oldNodes.length;\n        result.edgesRemoved += oldEdgeCount;\n        await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n        this.db.deleteFile(rel);\n        this.db.deleteUnresolvedRefsByFile(rel);\n        // Clean up pattern matches for removed files\n        this.db.getRawDb().run('DELETE FROM pattern_matches WHERE file_path = ?', [rel]);\n        result.removed.push(rel);\n      };\n\n      // \u2500\u2500 Exclude-rule cleanup \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\n      // Remove any indexed files that now match the current exclude patterns.\n      // This handles the case where a user adds a new exclude pattern (e.g.\n      // \"**/.vite/**\") and expects those files to disappear from the index on\n      // the next sync without needing a full --force re-index.\n      const allIndexed = this.db.getAllFiles();\n      for (const f of allIndexed) {\n        if (!shouldIncludeFile(f.path, this.config)) {\n          onProgress?.({ phase: 'scanning', current: 0, total: 0, meta: { excludeCleanup: true, file: f.path } });\n          await removeFile(f.path);\n        }\n      }\n\n      let filesToProcess: string[];\n\n      onProgress?.({ phase: 'scanning', current: 0, total: 0 });\n\n      if (changedFiles) {\n        filesToProcess = changedFiles.map(f => path.resolve(this.projectRoot, f));\n      } else {\n        const gitChanged = await getChangedFiles(this.projectRoot, this.config);\n        const hasChanges = gitChanged.added.length > 0 || gitChanged.modified.length > 0 || gitChanged.removed.length > 0;\n\n        if (hasChanges) {\n          for (const p of gitChanged.removed) {\n            await removeFile(path.relative(this.projectRoot, p).replace(/\\\\/g, '/'));\n          }\n          filesToProcess = [...gitChanged.added, ...gitChanged.modified];\n        } else {\n          // Fallback: full scan + detect removed files\n          const indexed = new Set(this.db.getAllFiles().map(f => f.path));\n          const current = new Set(\n            (await scanDirectory(this.projectRoot, this.config))\n              .map(f => path.relative(this.projectRoot, f).replace(/\\\\/g, '/'))\n          );\n          result.filesScanned = current.size;\n          for (const p of indexed) {\n            if (!current.has(p)) await removeFile(p);\n          }\n          filesToProcess = await scanDirectory(this.projectRoot, this.config);\n        }\n      }\n\n      result.filesScanned = result.filesScanned || filesToProcess.length;\n      onProgress?.({ phase: 'scanning', current: result.filesScanned, total: result.filesScanned });\n\n      const poisonedLanguages = new Set<string>();\n\n      for (let i = 0; i < filesToProcess.length; i++) {\n        const file = filesToProcess[i];\n        onProgress?.({ phase: 'parsing', current: i + 1, total: filesToProcess.length, currentFile: file });\n\n        if (!fs.existsSync(file)) {\n          const rel = path.relative(this.projectRoot, file).replace(/\\\\/g, '/');\n          await removeFile(rel);\n          continue;\n        }\n\n        try {\n          // Skip files whose language parser is currently poisoned\n          const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n          const lang = detectLanguage(file);\n          if (poisonedLanguages.has(lang)) continue;\n\n          const extracted = await extractFile(file, this.projectRoot);\n          if (!extracted) continue;\n\n          const existing = this.db.getFile(extracted.filePath);\n          const isNew = !existing;\n          if (!isNew && existing!.contentHash === extracted.contentHash) continue;\n\n          const oldNodes = this.db.getNodesByFile(extracted.filePath);\n          const oldEdgeCount = this.db.getEdgesForNodes(oldNodes.map(n => n.id)).length;\n          await this.vectors.deleteEmbeddings(oldNodes.map(n => n.id));\n\n          this.db.transaction(() => {\n            result.nodesRemoved += oldNodes.length;\n            result.edgesRemoved += oldEdgeCount;\n            this.db.deleteNodesByFile(extracted.filePath);\n            this.db.deleteUnresolvedRefsByFile(extracted.filePath);\n            this.db.upsertFile({\n              path: extracted.filePath,\n              contentHash: extracted.contentHash,\n              language: extracted.language,\n              fileSize: extracted.fileSize,\n              symbolCount: extracted.nodes.length,\n              indexedAt: Date.now(),\n            });\n            for (const node of extracted.nodes) { this.db.upsertNode(node); result.nodesCreated++; }\n            for (const edge of extracted.edges) { this.db.insertEdge(edge); result.edgesCreated++; }\n            for (const ref of extracted.unresolvedRefs) {\n              this.db.insertUnresolvedRef(ref.sourceId, ref.refName, ref.refKind, extracted.filePath, ref.line, ref.column);\n            }\n          });\n\n          this.resolver.invalidateFile(extracted.filePath);\n          if (isNew) result.added.push(extracted.filePath);\n          else { result.modified.push(extracted.filePath); result.nodesUpdated += extracted.nodes.length; }\n        } catch (err) {\n          const msg = err instanceof Error ? err.message : String(err);\n          result.errors.push(`${file}: ${msg}`);\n\n          // Detect WASM runtime abort and attempt recovery\n          const isWasmCrash = (err as any)?.constructor?.name === 'RuntimeError'\n            || msg.includes('Aborted(') \n            || msg.includes('RuntimeError')\n            || msg.includes('WASM grammar exists but failed to load');\n          if (isWasmCrash) {\n            const { detectLanguage } = await Promise.resolve().then(() => require('../extraction/languages.js'));\n            const lang = detectLanguage(file);\n            poisonedLanguages.add(lang);\n\n            clearParserCache();\n            try {\n              await initGrammars();\n              poisonedLanguages.clear();\n            } catch {\n              result.errors.push('WASM runtime unrecoverable after crash \u2014 aborting sync');\n              break;\n            }\n          }\n        }\n      }\n\n      // Resolve cross-file references\n      onProgress?.({ phase: 'resolving', current: 0, total: 1 });\n      await this.resolver.resolveAll((current, total) => {\n        onProgress?.({ phase: 'resolving', current, total });\n      });\n\n      await detectFrameworks(this.projectRoot);\n\n      // Generate embeddings (if enabled)\n      if (this.vectors.isInitialized()) {\n        onProgress?.({ phase: 'embeddings', current: 0, total: 1 });\n        await this.vectors.embedAll((current, total) =>\n          onProgress?.({ phase: 'embeddings', current, total })\n        );\n      }\n\n      // Analyze architecture (if enabled, or auto-enabled for security)\n      if (this.config.enableArchitecture || this.config.enableSecurity) {\n        if (this.config.enableSecurity && !this.config.enableArchitecture) {\n          const { logWarn } = await Promise.resolve().then(() => require('../errors.js'));\n          logWarn('enableSecurity requires enableArchitecture \u2014 auto-enabling architecture analysis for this run');\n        }\n        onProgress?.({ phase: 'architecture', current: 0, total: 1 });\n        await this.arch.analyze(msg =>\n          onProgress?.({ phase: 'architecture', current: 0, total: 1, meta: { msg } })\n        );\n        onProgress?.({ phase: 'architecture', current: 1, total: 1 });\n      }\n\n      // Run security analysis (if enabled)\n      if (this.config.enableSecurity) {\n        try {\n          const { SecurityPipeline } = await Promise.resolve().then(() => require('../security/pipeline.js'));\n          this.db.applySecuritySchema();\n          const secPipeline = new SecurityPipeline(this.db, this.config, this.projectRoot);\n          onProgress?.({ phase: 'security', current: 0, total: 1 });\n          await secPipeline.run((phase, current, total) =>\n            onProgress?.({ phase: 'security', current, total, meta: { secPhase: phase } })\n          );\n          onProgress?.({ phase: 'security', current: 1, total: 1 });\n        } catch { /* security analysis is non-critical */ }\n      }\n\n      // Re-index documentation (if enabled)\n      if (this.config.enableDocs) {\n        try {\n          const { DocsIndexer } = await Promise.resolve().then(() => require('../docs/indexer.js'));\n          this.db.applyDocsSchema();\n          const docsIndexer = new DocsIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await docsIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'docs', current: 0, total: 1, meta: { msg } }),\n          });\n        } catch { /* docs indexing is non-critical */ }\n      }\n\n      // Re-index data files (if enabled)\n      if ((this.config as any).enableData) {\n        try {\n          const { DataIndexer } = await Promise.resolve().then(() => require('../data/indexer.js'));\n          this.db.applyDataSchema();\n          const dataIndexer = new DataIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n          await dataIndexer.indexAll({\n            onProgress: msg => onProgress?.({ phase: 'data', current: 0, total: 1, meta: { msg } }),\n          });\n\n          // Assign data files to 'data' architecture layer if architecture is enabled\n          if (this.config.enableArchitecture) {\n            try {\n              const rawDb = this.db.getRawDb();\n              const tableExists = rawDb.get(\"SELECT name FROM sqlite_master WHERE type='table' AND name='arch_file_layers'\");\n              if (tableExists) {\n                const datasets = rawDb.all('SELECT file_path FROM data_datasets') as Array<{ file_path: string }>;\n                for (const ds of datasets) {\n                  rawDb.run(\n                    `INSERT OR REPLACE INTO arch_file_layers (file_path, layer_id, confidence) VALUES (?, ?, ?)`,\n                    [ds.file_path, 'layer:data', 1.0],\n                  );\n                }\n              }\n            } catch { /* non-critical */ }\n          }\n        } catch { /* data indexing is non-critical */ }\n      }\n\n      // Re-index pattern matches for changed files (if enabled)\n      if ((this.config as any).enablePatterns) {\n        try {\n          const tableExists = this.db.getRawDb().get(\n            \"SELECT name FROM sqlite_master WHERE type='table' AND name='pattern_matches'\"\n          );\n          if (tableExists) {\n            const { PatternIndexer } = await Promise.resolve().then(() => require('../patterns/indexer.js'));\n            const { PatternLibraryLoader } = await Promise.resolve().then(() => require('../patterns/loader.js'));\n            const { PatternRunner } = await Promise.resolve().then(() => require('../patterns/runner.js'));\n            const runner = new PatternRunner();\n            if (runner.isAvailable()) {\n              const loader = new PatternLibraryLoader();\n              const builtinPath = require('path').join(__dirname, '../patterns/library');\n              const rules = loader.load(builtinPath, (this.config as any).patternLibraryPath);\n              const threshold = (this.config as any).patternSeverityThreshold ?? 'low';\n              const indexer = new PatternIndexer(this.db.getRawDb(), this.config, this.projectRoot);\n              const changedPaths = [...result.added, ...result.modified];\n              for (const filePath of changedPaths) {\n                const fileRecord = this.db.getFile(filePath);\n                const language = fileRecord?.language ?? 'unknown';\n                await indexer.indexFile(filePath, language, rules, runner, threshold, Date.now());\n              }\n            }\n          }\n        } catch { /* non-critical */ }\n      }\n\n      this.lock.clearDirty();\n      result.duration = Date.now() - start;\n      return result;\n    } finally {\n      this.lock.release();\n      release();\n    }\n  }\n}\n"],
+  "mappings": 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   "names": []
 }

package/dist/core/snapshot.d.ts

@@ -0,0 +1,58 @@
+/**
+ * KiroGraph Snapshot Manager
+ *
+ * Saves lightweight graph snapshots (node IDs + edge tuples) to
+ * .kirograph/snapshots/ and computes structural diffs between them.
+ */
+import type { GraphDatabase } from '../db/database';
+export interface SnapshotNode {
+    id: string;
+    name: string;
+    kind: string;
+    filePath: string;
+}
+export interface SnapshotEdge {
+    source: string;
+    target: string;
+    kind: string;
+}
+export interface GraphSnapshot {
+    label: string;
+    timestamp: number;
+    nodeCount: number;
+    edgeCount: number;
+    nodes: SnapshotNode[];
+    edges: SnapshotEdge[];
+}
+export interface GraphDiff {
+    from: {
+        label: string;
+        timestamp: number;
+    };
+    to: {
+        label: string;
+        timestamp: number;
+    };
+    addedNodes: SnapshotNode[];
+    removedNodes: SnapshotNode[];
+    addedEdges: SnapshotEdge[];
+    removedEdges: SnapshotEdge[];
+}
+export declare class SnapshotManager {
+    private readonly db;
+    private readonly snapshotsDir;
+    constructor(db: GraphDatabase, projectRoot: string);
+    private ensureDir;
+    save(label?: string): GraphSnapshot;
+    list(): Array<{
+        label: string;
+        timestamp: number;
+        nodeCount: number;
+        edgeCount: number;
+    }>;
+    load(label: string): GraphSnapshot | null;
+    loadLatest(): GraphSnapshot | null;
+    currentSnapshot(): GraphSnapshot;
+    diff(from: GraphSnapshot, to: GraphSnapshot): GraphDiff;
+}
+//# sourceMappingURL=snapshot.d.ts.map

package/dist/core/snapshot.d.ts.map

@@ -0,0 +1 @@
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package/dist/data/filters.d.ts

@@ -0,0 +1,23 @@
+/**
+ * Structured Filter → SQL WHERE Clause Builder
+ *
+ * Converts QueryFilter objects into parameterized SQL.
+ * Zero injection surface — column names are validated against schema,
+ * values are always parameterized.
+ */
+import type { QueryFilter } from './types';
+interface SQLClause {
+    where: string;
+    params: any[];
+}
+/**
+ * Build a parameterized WHERE clause from structured filters.
+ * All filters are ANDed together.
+ *
+ * @param filters - Array of QueryFilter objects
+ * @param validColumns - Set of valid column names (from schema)
+ * @returns SQL WHERE clause and parameter array
+ */
+export declare function buildWhereClause(filters: QueryFilter[], validColumns: Set<string>): SQLClause;
+export {};
+//# sourceMappingURL=filters.d.ts.map

package/dist/data/filters.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"filters.d.ts","sourceRoot":"","sources":["../../src/data/filters.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,SAAS,CAAC;AAE3C,UAAU,SAAS;IACjB,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,GAAG,EAAE,CAAC;CACf;AAcD;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,WAAW,EAAE,EAAE,YAAY,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,SAAS,CAoF7F"}

package/dist/data/indexer.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Data Indexer
+ *
+ * Orchestrates: scan data files → parse → profile columns → persist rows to SQLite.
+ * Supports incremental re-indexing via content hashes.
+ */
+import type { KiroGraphConfig } from '../config';
+import type { DataIndexResult } from './types';
+export declare class DataIndexer {
+    private readonly db;
+    private readonly config;
+    private readonly projectRoot;
+    constructor(db: any, config: KiroGraphConfig, projectRoot: string);
+    indexAll(opts?: {
+        force?: boolean;
+        onProgress?: (msg: string) => void;
+    }): Promise<DataIndexResult>;
+    indexFile(relPath: string, force?: boolean): Promise<{
+        rows: number;
+        columns: number;
+    } | null>;
+    private scanDataFiles;
+    private removeDeletedDatasets;
+}
+//# sourceMappingURL=indexer.d.ts.map

package/dist/data/indexer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"indexer.d.ts","sourceRoot":"","sources":["../../src/data/indexer.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AACjD,OAAO,KAAK,EAAuB,eAAe,EAAa,MAAM,SAAS,CAAC;AAkB/E,qBAAa,WAAW;IACtB,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAM;IACzB,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAkB;IACzC,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;gBAEzB,EAAE,EAAE,GAAG,EAAE,MAAM,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM;IAM3D,QAAQ,CAAC,IAAI,CAAC,EAAE;QAAE,KAAK,CAAC,EAAE,OAAO,CAAC;QAAC,UAAU,CAAC,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,IAAI,CAAA;KAAE,GAAG,OAAO,CAAC,eAAe,CAAC;IAyClG,SAAS,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,UAAQ,GAAG,OAAO,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI,CAAC;IA8GlG,OAAO,CAAC,aAAa;IAkCrB,OAAO,CAAC,qBAAqB;CAc9B"}

package/dist/data/linker.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Data ↔ Code Linker
+ *
+ * Detects references to data files in source code and populates data_code_refs.
+ * Patterns detected:
+ *   - readFileSync('data/users.csv'), readFile('path/to/file.csv')
+ *   - pd.read_csv('data/file.csv'), pd.read_excel(...)
+ *   - open('data/file.csv'), csv.reader(open(...))
+ *   - COPY FROM 'file.csv', \copy ... from 'file.csv'
+ *   - require('./data/file.json'), import ... from './data/file.json'
+ *   - fs.createReadStream('data/file.csv')
+ *   - String literals matching known data file paths
+ */
+/**
+ * Scan source code content for references to data files.
+ * Returns matched file paths with their reference type.
+ */
+export declare function detectDataReferences(sourceContent: string, knownDataPaths: Set<string>): Array<{
+    filePath: string;
+    refType: 'reads' | 'writes';
+    confidence: number;
+}>;
+/**
+ * Link data files to code symbols.
+ * Scans all indexed source files for references to known data file paths.
+ */
+export declare class DataCodeLinker {
+    private readonly db;
+    private readonly projectRoot;
+    constructor(db: any, projectRoot: string);
+    /**
+     * Populate data_code_refs by scanning source files for data file references.
+     * Returns the number of refs created.
+     */
+    linkAll(): number;
+}
+//# sourceMappingURL=linker.d.ts.map

package/dist/data/linker.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"linker.d.ts","sourceRoot":"","sources":["../../src/data/linker.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAqCH;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,aAAa,EAAE,MAAM,EACrB,cAAc,EAAE,GAAG,CAAC,MAAM,CAAC,GAC1B,KAAK,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,OAAO,GAAG,QAAQ,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,CAAC,CAoC9E;AAiCD;;;GAGG;AACH,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAM;IACzB,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;gBAEzB,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,MAAM;IAKxC;;;OAGG;IACH,OAAO,IAAI,MAAM;CAuDlB"}

package/dist/data/lint.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Data Lint
+ *
+ * Integrity checks for the data index:
+ * - Row count mismatch (stored vs actual table rows)
+ * - Schema consistency (columns in profile vs actual table)
+ * - Stale datasets (source file deleted or changed)
+ * - Missing optional deps (files skipped due to missing xlsx/parquetjs-lite)
+ * - Orphan code refs (refs pointing to deleted datasets)
+ */
+export interface LintIssue {
+    severity: 'error' | 'warning' | 'info';
+    dataset?: string;
+    message: string;
+}
+export interface LintResult {
+    issues: LintIssue[];
+    datasetsChecked: number;
+    healthy: number;
+}
+export declare class DataLinter {
+    private readonly db;
+    private readonly projectRoot;
+    constructor(db: any, projectRoot: string);
+    lint(): LintResult;
+}
+//# sourceMappingURL=lint.d.ts.map

package/dist/data/lint.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lint.d.ts","sourceRoot":"","sources":["../../src/data/lint.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAMH,MAAM,WAAW,SAAS;IACxB,QAAQ,EAAE,OAAO,GAAG,SAAS,GAAG,MAAM,CAAC;IACvC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,eAAe,EAAE,MAAM,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,UAAU;IACrB,OAAO,CAAC,QAAQ,CAAC,EAAE,CAAM;IACzB,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAS;gBAEzB,EAAE,EAAE,GAAG,EAAE,WAAW,EAAE,MAAM;IAKxC,IAAI,IAAI,UAAU;CAgFnB"}

package/dist/data/parsers/csv.d.ts

@@ -0,0 +1,11 @@
+/**
+ * CSV/TSV Streaming Parser
+ *
+ * Handles: .csv, .tsv
+ * Parses line-by-line without loading the full file into memory.
+ * Handles quoted fields, newlines within quotes, and various delimiters.
+ */
+import type { DataFormatParser } from '../types';
+export declare const csvParser: DataFormatParser;
+export declare const tsvParser: DataFormatParser;
+//# sourceMappingURL=csv.d.ts.map

package/dist/data/parsers/csv.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"csv.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/csv.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH,OAAO,KAAK,EAAE,gBAAgB,EAAa,MAAM,UAAU,CAAC;AAwG5D,eAAO,MAAM,SAAS,EAAE,gBAKvB,CAAC;AAEF,eAAO,MAAM,SAAS,EAAE,gBAKvB,CAAC"}

package/dist/data/parsers/excel.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Excel Parser (Optional Dependency)
+ *
+ * Handles: .xlsx, .xls
+ * Requires: xlsx package (optional dependency)
+ * Gracefully returns isAvailable()=false if not installed.
+ */
+import type { DataFormatParser } from '../types';
+export declare const excelParser: DataFormatParser;
+//# sourceMappingURL=excel.d.ts.map

package/dist/data/parsers/excel.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"excel.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/excel.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAa,MAAM,UAAU,CAAC;AAkB5D,eAAO,MAAM,WAAW,EAAE,gBA0DzB,CAAC"}

package/dist/data/parsers/index.d.ts

@@ -0,0 +1,28 @@
+/**
+ * Data Format Registry
+ *
+ * Maps file extensions to their appropriate parser.
+ * Gracefully skips formats whose optional dependencies are not installed.
+ */
+import type { DataFormatParser } from '../types';
+/**
+ * Get the parser for a given file extension.
+ * Returns null if no parser is registered or the optional dep is missing.
+ */
+export declare function getDataParser(filePath: string): DataFormatParser | null;
+/**
+ * Check if a file extension is supported for data parsing.
+ */
+export declare function isSupportedDataFormat(filePath: string): boolean;
+/**
+ * Get all supported extensions (only those with available deps).
+ */
+export declare function getAvailableExtensions(): string[];
+/**
+ * Get extensions that are registered but have missing optional deps.
+ */
+export declare function getUnavailableExtensions(): Array<{
+    ext: string;
+    parser: string;
+}>;
+//# sourceMappingURL=index.d.ts.map

package/dist/data/parsers/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,UAAU,CAAC;AA4BjD;;;GAGG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,gBAAgB,GAAG,IAAI,CAMvE;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAE/D;AAED;;GAEG;AACH,wBAAgB,sBAAsB,IAAI,MAAM,EAAE,CAMjD;AAED;;GAEG;AACH,wBAAgB,wBAAwB,IAAI,KAAK,CAAC;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC,CAQjF"}

package/dist/data/parsers/json-array.d.ts

@@ -0,0 +1,9 @@
+/**
+ * JSON Array Parser
+ *
+ * Handles: .json files that contain an array of objects
+ * For files in data/ directories (not package.json, tsconfig.json, etc.)
+ */
+import type { DataFormatParser } from '../types';
+export declare const jsonArrayParser: DataFormatParser;
+//# sourceMappingURL=json-array.d.ts.map

package/dist/data/parsers/json-array.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"json-array.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/json-array.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,gBAAgB,EAAa,MAAM,UAAU,CAAC;AAI5D,eAAO,MAAM,eAAe,EAAE,gBA6D7B,CAAC"}

package/dist/data/parsers/jsonl.d.ts

@@ -0,0 +1,9 @@
+/**
+ * JSONL/NDJSON Streaming Parser
+ *
+ * Handles: .jsonl, .ndjson
+ * Parses one JSON object per line without loading the full file.
+ */
+import type { DataFormatParser } from '../types';
+export declare const jsonlParser: DataFormatParser;
+//# sourceMappingURL=jsonl.d.ts.map

package/dist/data/parsers/jsonl.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"jsonl.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/jsonl.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,KAAK,EAAE,gBAAgB,EAAa,MAAM,UAAU,CAAC;AAI5D,eAAO,MAAM,WAAW,EAAE,gBAoDzB,CAAC"}

package/dist/data/parsers/parquet.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Parquet Parser (Optional Dependency)
+ *
+ * Handles: .parquet
+ * Requires: parquetjs-lite package (optional dependency)
+ * Gracefully returns isAvailable()=false if not installed.
+ */
+import type { DataFormatParser } from '../types';
+export declare const parquetParser: DataFormatParser;
+//# sourceMappingURL=parquet.d.ts.map

package/dist/data/parsers/parquet.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"parquet.d.ts","sourceRoot":"","sources":["../../../src/data/parsers/parquet.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAa,MAAM,UAAU,CAAC;AAuB5D,eAAO,MAAM,aAAa,EAAE,gBAyD3B,CAAC"}

package/dist/data/profiler.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Column Profiler
+ *
+ * Analyzes parsed rows to produce column profiles:
+ * - Type inference (string, integer, float, boolean, date, null, mixed)
+ * - Null count and percentage
+ * - Cardinality (distinct values)
+ * - Min/max values
+ * - Mean (for numeric columns)
+ * - Sample values (up to 5)
+ */
+import type { DataColumn, ParsedRow } from './types';
+/**
+ * Profile columns from a batch of rows.
+ * Call repeatedly with batches, then call finalize() to get the final profiles.
+ */
+export declare class ColumnProfiler {
+    private stats;
+    private columnOrder;
+    /**
+     * Process a batch of rows.
+     */
+    addBatch(rows: ParsedRow[], columns: string[]): void;
+    /**
+     * Finalize and return column profiles.
+     */
+    finalize(datasetId: string): DataColumn[];
+}
+//# sourceMappingURL=profiler.d.ts.map

package/dist/data/profiler.d.ts.map

@@ -0,0 +1 @@
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package/dist/data/queries.d.ts

@@ -0,0 +1,95 @@
+/**
+ * Data Queries
+ *
+ * Read-side helpers for MCP tools and CLI commands.
+ * Handles: list, describe, query (with filters), aggregate, search.
+ */
+import type { DataSet, DataColumn, QueryFilter, AggregateMetric, CorrelationPair, JoinType, ColumnQuality } from './types';
+export interface ValidationRule {
+    column: string;
+    rules: string[];
+}
+export interface SampleHint {
+    column: string;
+    hint: string;
+}
+export declare class DataQueries {
+    private readonly db;
+    constructor(db: any);
+    listDatasets(): DataSet[];
+    describeDataset(datasetId: string): {
+        dataset: DataSet;
+        columns: DataColumn[];
+    } | null;
+    describeColumn(datasetId: string, columnName: string): DataColumn | null;
+    queryRows(datasetId: string, opts?: {
+        filters?: QueryFilter[];
+        columns?: string[];
+        limit?: number;
+        offset?: number;
+    }): {
+        rows: any[];
+        totalMatching: number;
+    } | null;
+    aggregate(datasetId: string, opts: {
+        groupBy: string[];
+        metrics: AggregateMetric[];
+        filters?: QueryFilter[];
+    }): {
+        rows: any[];
+    } | null;
+    searchColumns(datasetId: string, query: string): DataColumn[];
+    getStats(): {
+        datasets: number;
+        totalRows: number;
+        totalColumns: number;
+    };
+    join(opts: {
+        left: string;
+        right: string;
+        leftColumn: string;
+        rightColumn: string;
+        type?: JoinType;
+        columns?: string[];
+        limit?: number;
+    }): {
+        rows: any[];
+        totalMatching: number;
+    } | null;
+    correlations(datasetId: string, threshold?: number): CorrelationPair[] | null;
+    getHistory(datasetId: string, limit?: number): Array<{
+        id: number;
+        datasetId: string;
+        snapshotAt: number;
+        rowCount: number;
+        columnCount: number;
+        columns: Array<{
+            name: string;
+            type: string;
+            cardinality: number;
+            nullPct: number;
+        }>;
+        contentHash: string;
+    }> | null;
+    detectDrift(datasetId: string): {
+        hasDrift: boolean;
+        addedColumns: string[];
+        removedColumns: string[];
+        changedColumns: Array<{
+            name: string;
+            changes: string[];
+        }>;
+        rowCountDelta: number;
+    } | null;
+    quality(datasetId: string): ColumnQuality[] | null;
+    /**
+     * Infer validation rules from column profiles.
+     * Returns rules the code should apply when reading/writing this dataset.
+     */
+    validationRules(datasetId: string): ValidationRule[] | null;
+    /**
+     * From column profiles, provide hints for generating realistic test data.
+     */
+    sampleHints(datasetId: string): SampleHint[] | null;
+}
+//# sourceMappingURL=queries.d.ts.map

package/dist/data/queries.d.ts.map

@@ -0,0 +1 @@
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