jbrowse-plugin-protein3d 0.0.3 → 0.0.5

package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js

@@ -2,7 +2,7 @@ import React, { useEffect, useState } from 'react';
 import { observer } from 'mobx-react';
 import { Button, DialogActions, DialogContent, Typography } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { getContainingView, getSession, } from '@jbrowse/core/util';
+import { getContainingView, getSession, isSessionWithAddTracks, } from '@jbrowse/core/util';
 import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
 // locals
 import { getDisplayName, getGeneDisplayName, getId, getTranscriptDisplayName, getTranscriptFeatures, } from './util';
@@ -42,8 +42,9 @@ const AlphaFoldDBSearch = observer(function ({ feature, model, handleClose, }) {
     const url = uniprotId
         ? `https://alphafold.ebi.ac.uk/files/AF-${uniprotId}-F1-model_v4.cif`
         : undefined;
-    const { seq: structureSequence, isLoading: isRemoteStructureSequenceLoading, error: remoteStructureSequenceError, } = useRemoteStructureFileSequence({ url });
+    const { sequences: structureSequences, isLoading: isRemoteStructureSequenceLoading, error: remoteStructureSequenceError, } = useRemoteStructureFileSequence({ url });
     const e = myGeneError || isoformProteinSequencesError || remoteStructureSequenceError;
+    const structureSequence = structureSequences?.[0];
     useEffect(() => {
         if (isoformSequences !== undefined) {
             const ret = options.find(f => isoformSequences[f.id()]?.seq.replaceAll('*', '') ==
@@ -55,34 +56,182 @@ const AlphaFoldDBSearch = observer(function ({ feature, model, handleClose, }) {
         React.createElement(DialogContent, { className: classes.dialogContent },
             e ? React.createElement(ErrorMessage, { error: e }) : null,
             React.createElement(Typography, null,
-                "Automatically find AlphaFoldDB entry for given transcript",
-                ' ',
+                "Automatically find AlphaFoldDB entry for given transcript via gene ID lookup ",
                 React.createElement(HelpButton, null)),
             isRemoteStructureSequenceLoading ? (React.createElement(LoadingEllipses, { variant: "h6", message: "Loading sequence from remote structure file" })) : null,
-            isMyGeneLoading ? (React.createElement(LoadingEllipses, { variant: "h6", message: "Looking up UniProt ID from mygene.info" })) : !uniprotId ? (React.createElement("div", null,
+            isMyGeneLoading ? (React.createElement(LoadingEllipses, { variant: "h6", message: "Looking up UniProt ID from mygene.info" })) : uniprotId ? null : (React.createElement("div", null,
                 "UniProt ID not found. Search sequence on AlphaFoldDB",
                 ' ',
                 React.createElement("a", { href: `https://alphafold.ebi.ac.uk/search/sequence/${userSelectedProteinSequence?.seq.replaceAll('*', '')}`, target: "_blank", rel: "noreferrer" }, "here"),
                 ' ',
                 React.createElement("br", null),
-                "After visiting the above link, then paste the structure URL into the Manual tab")) : null,
+                "After visiting the above link, then paste the structure URL into the Manual tab")),
             isIsoformProteinSequencesLoading ? (React.createElement(LoadingEllipses, { variant: "h6", message: "Loading protein sequences from transcript isoforms" })) : null,
             isoformSequences && structureSequence && selectedTranscript ? (React.createElement(React.Fragment, null,
                 React.createElement(TranscriptSelector, { val: userSelection ?? '', setVal: setUserSelection, structureSequence: structureSequence, feature: feature, isoforms: options, isoformSequences: isoformSequences }),
                 React.createElement(AlphaFoldDBSearchStatus, { uniprotId: uniprotId, selectedTranscript: selectedTranscript, structureSequence: structureSequence, isoformSequences: isoformSequences }))) : null),
         React.createElement(DialogActions, null,
-            React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel"),
+            React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => {
+                    handleClose();
+                } }, "Cancel"),
             React.createElement(Button, { variant: "contained", color: "primary", disabled: !uniprotId || !userSelectedProteinSequence || !selectedTranscript, onClick: () => {
                     session.addView('ProteinView', {
                         type: 'ProteinView',
-                        url,
-                        seq2: userSelectedProteinSequence?.seq,
-                        feature: selectedTranscript?.toJSON(),
-                        connectedViewId: view.id,
-                        displayName: `Protein view ${getGeneDisplayName(feature)} - ${getTranscriptDisplayName(selectedTranscript)}`,
+                        isFloating: true,
+                        structures: [
+                            {
+                                url,
+                                userProvidedTranscriptSequence: userSelectedProteinSequence?.seq,
+                                feature: selectedTranscript?.toJSON(),
+                                connectedViewId: view.id,
+                            },
+                        ],
+                        displayName: [
+                            'Protein view',
+                            uniprotId,
+                            getGeneDisplayName(feature),
+                            getTranscriptDisplayName(selectedTranscript),
+                        ].join(' - '),
                     });
                     handleClose();
-                } }, "Submit"))));
+                } }, "Launch 3-D protein structure view"),
+            React.createElement(Button, { variant: "contained", disabled: !uniprotId || !userSelectedProteinSequence || !selectedTranscript, onClick: () => {
+                    if (uniprotId && isSessionWithAddTracks(session)) {
+                        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+                        ;
+                        (async () => {
+                            try {
+                                session.addTemporaryAssembly?.({
+                                    name: uniprotId,
+                                    sequence: {
+                                        type: 'ReferenceSequenceTrack',
+                                        trackId: `${uniprotId}-ReferenceSequenceTrack`,
+                                        sequenceType: 'pep',
+                                        adapter: {
+                                            type: 'UnindexedFastaAdapter',
+                                            rewriteRefNames: "jexl:split(refName,'|')[1]",
+                                            fastaLocation: {
+                                                uri: `https://rest.uniprot.org/uniprotkb/${uniprotId}.fasta`,
+                                            },
+                                        },
+                                    },
+                                });
+                                const url = `https://rest.uniprot.org/uniprotkb/${uniprotId}.gff`;
+                                const res = await fetch(url);
+                                if (!res.ok) {
+                                    throw new Error(`HTTP ${res.status} fetching ${url}`);
+                                }
+                                const data = await res.text();
+                                const types = [
+                                    ...new Set(data
+                                        .split('\n')
+                                        .filter(f => !f.startsWith('#'))
+                                        .map(f => f.trim())
+                                        .filter(f => !!f)
+                                        .map(f => f.split('\t')[2])),
+                                ];
+                                types.forEach(type => {
+                                    const s = `${uniprotId}-${type}`;
+                                    session.addTrackConf({
+                                        type: 'FeatureTrack',
+                                        trackId: s,
+                                        name: type,
+                                        adapter: {
+                                            type: 'Gff3Adapter',
+                                            gffLocation: {
+                                                uri: `https://rest.uniprot.org/uniprotkb/${uniprotId}.gff`,
+                                            },
+                                        },
+                                        assemblyNames: [uniprotId],
+                                        displays: [
+                                            {
+                                                displayId: `${s}-LinearBasicDisplay`,
+                                                type: 'LinearBasicDisplay',
+                                                jexlFilters: [`get(feature,'type')=='${type}'`],
+                                            },
+                                        ],
+                                    });
+                                });
+                                session.addTrackConf({
+                                    type: 'FeatureTrack',
+                                    trackId: `${uniprotId}-Antigen`,
+                                    name: 'Antigen',
+                                    adapter: {
+                                        type: 'Gff3Adapter',
+                                        gffLocation: {
+                                            uri: `https://www.ebi.ac.uk/proteins/api/antigen/${uniprotId}?format=gff`,
+                                        },
+                                    },
+                                    assemblyNames: [uniprotId],
+                                });
+                                session.addTrackConf({
+                                    type: 'FeatureTrack',
+                                    trackId: `${uniprotId}-Variation`,
+                                    name: 'Variation',
+                                    adapter: {
+                                        type: 'UniProtVariationAdapter',
+                                        location: {
+                                            uri: `https://www.ebi.ac.uk/proteins/api/variation/${uniprotId}.json`,
+                                        },
+                                    },
+                                    assemblyNames: [uniprotId],
+                                });
+                                session.addTrackConf({
+                                    type: 'QuantitativeTrack',
+                                    trackId: `${uniprotId}-AlphaFold-confidence`,
+                                    name: 'AlphaFold confidence',
+                                    adapter: {
+                                        type: 'AlphaFoldConfidenceAdapter',
+                                        location: {
+                                            uri: `https://alphafold.ebi.ac.uk/files/AF-${uniprotId}-F1-confidence_v4.json`,
+                                        },
+                                    },
+                                    assemblyNames: [uniprotId],
+                                });
+                                session.addTrackConf({
+                                    type: 'MultiQuantitativeTrack',
+                                    trackId: `${uniprotId}-AlphaMissense-scores`,
+                                    name: 'AlphaMissense scores',
+                                    assemblyNames: [uniprotId],
+                                    adapter: {
+                                        type: 'AlphaMissensePathogenicityAdapter',
+                                        location: {
+                                            uri: `https://alphafold.ebi.ac.uk/files/AF-${uniprotId}-F1-aa-substitutions.csv`,
+                                        },
+                                    },
+                                    displays: [
+                                        {
+                                            type: 'MultiLinearWiggleDisplay',
+                                            displayId: `${uniprotId}-AlphaMissense-scores-MultiLinearWiggleDisplay`,
+                                            defaultRendering: 'multirowdensity',
+                                            renderers: {
+                                                MultiDensityRenderer: {
+                                                    type: 'MultiDensityRenderer',
+                                                    bicolorPivotValue: 0.5,
+                                                },
+                                            },
+                                        },
+                                    ],
+                                });
+                                const view = session.addView('LinearGenomeView', {
+                                    type: 'LinearGenomeView',
+                                    displayName: [
+                                        'Protein view',
+                                        uniprotId,
+                                        getGeneDisplayName(feature),
+                                        getTranscriptDisplayName(selectedTranscript),
+                                    ].join(' - '),
+                                });
+                                await view.navToLocString(uniprotId, uniprotId);
+                            }
+                            catch (e) {
+                                console.error(e);
+                                session.notifyError(`${e}`, e);
+                            }
+                        })();
+                    }
+                    handleClose();
+                } }, "Launch linear protein annotation view"))));
 });
 export default AlphaFoldDBSearch;
 //# sourceMappingURL=AlphaFoldDBSearch.js.map

package/dist/LaunchProteinView/components/AlphaFoldDBSearch.js.map

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package/dist/LaunchProteinView/components/AlphaFoldDBSearchStatus.js

@@ -17,10 +17,7 @@ export default function AlphaFoldDBSearchStatus({ uniprotId, selectedTranscript,
         ? `https://www.uniprot.org/uniprotkb/${uniprotId}/entry`
         : undefined;
     const [showAllProteinSequences, setShowAllProteinSequences] = useState(false);
-    return !uniprotId ? (React.createElement(Typography, null,
-        "Searching ",
-        getDisplayName(selectedTranscript),
-        " for UniProt ID")) : (React.createElement(React.Fragment, null,
+    return uniprotId ? (React.createElement(React.Fragment, null,
         React.createElement(Typography, null,
             "Found Uniprot ID:",
             ' ',
@@ -30,9 +27,14 @@ export default function AlphaFoldDBSearchStatus({ uniprotId, selectedTranscript,
             ' ',
             React.createElement("a", { href: url, target: "_blank", rel: "noreferrer" }, url)),
         structureSequence ? (React.createElement("div", { style: { margin: 20 } },
-            React.createElement(Button, { variant: "contained", color: "primary", onClick: () => setShowAllProteinSequences(!showAllProteinSequences) }, showAllProteinSequences
+            React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
+                    setShowAllProteinSequences(!showAllProteinSequences);
+                } }, showAllProteinSequences
                 ? 'Hide all isoform protein sequences'
                 : 'Show all isoform protein sequences'),
-            showAllProteinSequences ? (React.createElement(MSATable, { structureSequence: structureSequence, structureName: uniprotId, isoformSequences: isoformSequences })) : null)) : (React.createElement(NotFound, { uniprotId: uniprotId }))));
+            showAllProteinSequences ? (React.createElement(MSATable, { structureSequence: structureSequence, structureName: uniprotId, isoformSequences: isoformSequences })) : null)) : (React.createElement(NotFound, { uniprotId: uniprotId })))) : (React.createElement(Typography, null,
+        "Searching ",
+        getDisplayName(selectedTranscript),
+        " for UniProt ID"));
 }
 //# sourceMappingURL=AlphaFoldDBSearchStatus.js.map

package/dist/LaunchProteinView/components/AlphaFoldDBSearchStatus.js.map

@@ -1 +1 @@
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package/dist/LaunchProteinView/components/HelpButton.js

@@ -7,9 +7,13 @@ const HelpDialog = lazy(() => import('./HelpDialog'));
 export default function HelpButton() {
     const [show, setShow] = useState(false);
     return (React.createElement(React.Fragment, null,
-        React.createElement(IconButton, { onClick: () => setShow(true) },
+        React.createElement(IconButton, { onClick: () => {
+                setShow(true);
+            } },
             React.createElement(Help, null)),
         show ? (React.createElement(Suspense, { fallback: null },
-            React.createElement(HelpDialog, { handleClose: () => setShow(false) }))) : null));
+            React.createElement(HelpDialog, { handleClose: () => {
+                    setShow(false);
+                } }))) : null));
 }
 //# sourceMappingURL=HelpButton.js.map

package/dist/LaunchProteinView/components/HelpButton.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HelpButton.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/HelpButton.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,QAAQ;AACR,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAE3C,SAAS;AACT,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,CAAA;AAErD,MAAM,CAAC,OAAO,UAAU,UAAU;IAChC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,OAAO,CAAC,IAAI,CAAC,CAAA;YACf,CAAC;YAED,oBAAC,IAAI,OAAG,CACG;QACZ,IAAI,CAAC,CAAC,CAAC,CACN,oBAAC,QAAQ,IAAC,QAAQ,EAAE,IAAI;YACtB,oBAAC,UAAU,IACT,WAAW,EAAE,GAAG,EAAE;oBAChB,OAAO,CAAC,KAAK,CAAC,CAAA;gBAChB,CAAC,GACD,CACO,CACZ,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/HelpDialog.js

@@ -18,6 +18,8 @@ export default function HelpDialog({ handleClose, }) {
             React.createElement(Typography2, null, "If you run into challenges with this workflow e.g. your transcripts are not being found in mygene.info then you can use the Manual import form, or contact colin.diesh@gmail.com for troubleshooting")),
         React.createElement(Divider, null),
         React.createElement(DialogActions, null,
-            React.createElement(Button, { onClick: () => handleClose(), color: "primary" }, "Close"))));
+            React.createElement(Button, { onClick: () => {
+                    handleClose();
+                }, color: "primary" }, "Close"))));
 }
 //# sourceMappingURL=HelpDialog.js.map

package/dist/LaunchProteinView/components/HelpDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HelpDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/HelpDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,OAAO,EACP,UAAU,GAEX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,SAAS,WAAW,CAAC,EAAE,QAAQ,EAAmB;IAChD,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAG,QAAQ,CAAc,CAAA;AAClE,CAAC;AACD,MAAM,CAAC,OAAO,UAAU,UAAU,CAAC,EACjC,WAAW,GAGZ;IACC,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,MAAM;QAC3D,oBAAC,aAAa;YACZ,oBAAC,WAAW;;gBAEV;oBACE,mPAKK;oBACL,uLAIK;oBACL,wPAKK;oBACL,8PAKK;oBACL,+RAKK,CACF,CACO;YACd,oBAAC,WAAW,+MAIE,CACA;QAChB,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js

@@ -4,16 +4,24 @@ import { Tab, Tabs } from '@mui/material';
 // locals
 import AlphaFoldDBSearch from './AlphaFoldDBSearch';
 import UserProvidedStructure from './UserProvidedStructure';
+import ManualUniProtIDEntry from './ManualUniProtIDEntry';
 import TabPanel from './TabPanel';
 export default function LaunchProteinViewDialog({ handleClose, feature, model, }) {
     const [choice, setChoice] = useState(0);
-    return (React.createElement(Dialog, { maxWidth: "xl", title: "Launch protein view", onClose: () => handleClose(), open: true },
-        React.createElement(Tabs, { value: choice, onChange: (_, val) => setChoice(val) },
-            React.createElement(Tab, { value: 0, label: "Automatic lookup" }),
-            React.createElement(Tab, { value: 1, label: "Manual" })),
+    return (React.createElement(Dialog, { maxWidth: "xl", title: "Launch protein view", open: true, onClose: () => {
+            handleClose();
+        } },
+        React.createElement(Tabs, { value: choice, onChange: (_, val) => {
+                setChoice(val);
+            } },
+            React.createElement(Tab, { value: 0, label: "Automatic UniProt lookup" }),
+            React.createElement(Tab, { value: 1, label: "Manual UniProt entry" }),
+            React.createElement(Tab, { value: 2, label: "Open file manually" })),
         React.createElement(TabPanel, { value: choice, index: 0 },
             React.createElement(AlphaFoldDBSearch, { model: model, feature: feature, handleClose: handleClose })),
         React.createElement(TabPanel, { value: choice, index: 1 },
+            React.createElement(ManualUniProtIDEntry, { model: model, feature: feature, handleClose: handleClose })),
+        React.createElement(TabPanel, { value: choice, index: 2 },
             React.createElement(UserProvidedStructure, { model: model, feature: feature, handleClose: handleClose }))));
 }
 //# sourceMappingURL=LaunchProteinViewDialog.js.map

package/dist/LaunchProteinView/components/LaunchProteinViewDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LaunchProteinViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchProteinView/components/LaunchProteinViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAGzC,SAAS;AACT,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,qBAAqB,MAAM,yBAAyB,CAAA;AAC3D,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,CAAC,OAAO,UAAU,uBAAuB,CAAC,EAC9C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACvC,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,qBAAqB,EAC3B,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE;YACZ,WAAW,EAAE,CAAA;QACf,CAAC;QAED,oBAAC,IAAI,IACH,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,SAAS,CAAC,GAAG,CAAC,CAAA;YAChB,CAAC;YAED,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,0BAA0B,GAAG;YAClD,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,sBAAsB,GAAG;YAC9C,oBAAC,GAAG,IAAC,KAAK,EAAE,CAAC,EAAE,KAAK,EAAC,oBAAoB,GAAG,CACvC;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,iBAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,oBAAoB,IACnB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;YAC/B,oBAAC,qBAAqB,IACpB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACJ,CACV,CAAA;AACH,CAAC"}

package/dist/LaunchProteinView/components/MSATable.js

@@ -42,7 +42,9 @@ export default function MSATable({ structureName, structureSequence, isoformSequ
         ...Object.values(removedStars).map(({ feature, seq }) => `>${getTranscriptDisplayName(feature)}\n${seq}`),
     ].join('\n');
     return (React.createElement(React.Fragment, null,
-        React.createElement(FormControlLabel, { className: classes.margin, control: React.createElement(Checkbox, { onChange: event => setShowInFastaFormat(event.target.checked), checked: showInFastaFormat }), label: "Show in FASTA format?" }),
+        React.createElement(FormControlLabel, { className: classes.margin, control: React.createElement(Checkbox, { onChange: event => {
+                    setShowInFastaFormat(event.target.checked);
+                }, checked: showInFastaFormat }), label: "Show in FASTA format?" }),
         React.createElement(TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, fullWidth: true, value: showInFastaFormat ? l2 : l1, InputProps: {
                 readOnly: true,
                 classes: {

package/dist/LaunchProteinView/components/MSATable.js.map

@@ -1 +1 @@
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package/dist/LaunchProteinView/components/ManualUniProtIDEntry.d.ts

@@ -0,0 +1,8 @@
+import React from 'react';
+import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
+declare const ManualUniProtIDEntry: ({ feature, model, handleClose, }: {
+    feature: Feature;
+    model: AbstractTrackModel;
+    handleClose: () => void;
+}) => React.JSX.Element;
+export default ManualUniProtIDEntry;