jbrowse-plugin-protein3d 0.0.3 → 0.0.5

package/dist/test_data/gene.d.ts

@@ -1,67 +1,580 @@
 export declare const feature: {
-    strand: number;
-    source: string;
-    type: string;
-    start: number;
-    end: number;
-    phase: number;
-    derived_features: never[];
-    refName: string;
-    id: string;
-    parent: string;
-    gene_id: string;
-    transcript_id: string;
-    gene_type: string;
-    gene_name: string;
-    transcript_type: string;
-    transcript_name: string;
-    level: string;
-    protein_id: string;
-    transcript_support_level: string;
-    hgnc_id: string;
-    tag: string[];
-    ccdsid: string;
-    havana_gene: string;
-    havana_transcript: string;
-    subfeatures: {
-        strand: number;
-        source: string;
-        type: string;
-        start: number;
-        end: number;
-        phase: number;
-        derived_features: never[];
-        refName: string;
-        id: string;
-        parent: string;
-        gene_id: string;
-        transcript_id: string;
-        gene_type: string;
-        gene_name: string;
-        transcript_type: string;
-        transcript_name: string;
-        exon_number: string;
-        exon_id: string;
-        level: string;
-        protein_id: string;
-        transcript_support_level: string;
-        hgnc_id: string;
-        tag: string[];
-        ccdsid: string;
-        havana_gene: string;
-        havana_transcript: string;
-        uniqueId: string;
-        parentId: string;
-        __jbrowsefmt: {};
-    }[];
-    uniqueId: string;
-    parentId: string;
-    __jbrowsefmt: {};
+    readonly strand: -1;
+    readonly source: "HAVANA";
+    readonly type: "transcript";
+    readonly start: 51287257;
+    readonly end: 51297990;
+    readonly phase: 0;
+    readonly derived_features: readonly [];
+    readonly refName: "chr1";
+    readonly id: "ENST00000530004.5";
+    readonly parent: "ENSG00000085831.16";
+    readonly gene_id: "ENSG00000085831.16";
+    readonly transcript_id: "ENST00000530004.5";
+    readonly gene_type: "protein_coding";
+    readonly gene_name: "TTC39A";
+    readonly transcript_type: "protein_coding";
+    readonly transcript_name: "TTC39A-216";
+    readonly level: "2";
+    readonly protein_id: "ENSP00000431228.1";
+    readonly transcript_support_level: "1";
+    readonly hgnc_id: "HGNC:18657";
+    readonly tag: readonly ["basic", "CCDS"];
+    readonly ccdsid: "CCDS76162.1";
+    readonly havana_gene: "OTTHUMG00000008193.5";
+    readonly havana_transcript: "OTTHUMT00000387467.1";
+    readonly subfeatures: readonly [{
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51287257;
+        readonly end: 51288280;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:7";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "7";
+        readonly exon_id: "ENSE00000835623.5";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-0";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "three_prime_UTR";
+        readonly start: 51287257;
+        readonly end: 51288156;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "UTR3:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "7";
+        readonly exon_id: "ENSE00000835623.5";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-1";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51288156;
+        readonly end: 51288280;
+        readonly phase: 1;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "7";
+        readonly exon_id: "ENSE00000835623.5";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-2";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51288838;
+        readonly end: 51288955;
+        readonly phase: 1;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "6";
+        readonly exon_id: "ENSE00003633626.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-3";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51290004;
+        readonly end: 51290119;
+        readonly phase: 2;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "5";
+        readonly exon_id: "ENSE00003508941.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-4";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51290513;
+        readonly end: 51290625;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "4";
+        readonly exon_id: "ENSE00003479848.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-5";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51294390;
+        readonly end: 51294511;
+        readonly phase: 1;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "3";
+        readonly exon_id: "ENSE00003479532.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-6";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "CDS";
+        readonly start: 51296078;
+        readonly end: 51296155;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "CDS:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "2";
+        readonly exon_id: "ENSE00003608742.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-7";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "stop_codon";
+        readonly start: 51288156;
+        readonly end: 51288159;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "stop_codon:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "7";
+        readonly exon_id: "ENSE00000835623.5";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-8";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51288838;
+        readonly end: 51288955;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:6";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "6";
+        readonly exon_id: "ENSE00003633626.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-9";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51290004;
+        readonly end: 51290119;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "5";
+        readonly exon_id: "ENSE00003508941.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-10";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51290513;
+        readonly end: 51290625;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:4";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "4";
+        readonly exon_id: "ENSE00003479848.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-11";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51294390;
+        readonly end: 51294511;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:3";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "3";
+        readonly exon_id: "ENSE00003479532.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-12";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51296078;
+        readonly end: 51296170;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:2";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "2";
+        readonly exon_id: "ENSE00003608742.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-13";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "start_codon";
+        readonly start: 51296152;
+        readonly end: 51296155;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "start_codon:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "2";
+        readonly exon_id: "ENSE00003608742.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-14";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "five_prime_UTR";
+        readonly start: 51296155;
+        readonly end: 51296170;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "UTR5:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "2";
+        readonly exon_id: "ENSE00003608742.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-15";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "five_prime_UTR";
+        readonly start: 51297790;
+        readonly end: 51297990;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "UTR5:ENST00000530004.5";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "1";
+        readonly exon_id: "ENSE00002148799.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-16";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }, {
+        readonly strand: -1;
+        readonly source: "HAVANA";
+        readonly type: "exon";
+        readonly start: 51297790;
+        readonly end: 51297990;
+        readonly phase: 0;
+        readonly derived_features: readonly [];
+        readonly refName: "chr1";
+        readonly id: "exon:ENST00000530004.5:1";
+        readonly parent: "ENST00000530004.5";
+        readonly gene_id: "ENSG00000085831.16";
+        readonly transcript_id: "ENST00000530004.5";
+        readonly gene_type: "protein_coding";
+        readonly gene_name: "TTC39A";
+        readonly transcript_type: "protein_coding";
+        readonly transcript_name: "TTC39A-216";
+        readonly exon_number: "1";
+        readonly exon_id: "ENSE00002148799.1";
+        readonly level: "2";
+        readonly protein_id: "ENSP00000431228.1";
+        readonly transcript_support_level: "1";
+        readonly hgnc_id: "HGNC:18657";
+        readonly tag: readonly ["basic", "CCDS"];
+        readonly ccdsid: "CCDS76162.1";
+        readonly havana_gene: "OTTHUMG00000008193.5";
+        readonly havana_transcript: "OTTHUMT00000387467.1";
+        readonly uniqueId: "590611027-offset-601794870-0-17";
+        readonly parentId: "590611027-offset-601794870-0";
+        readonly __jbrowsefmt: {};
+    }];
+    readonly uniqueId: "590611027-offset-601794870-0";
+    readonly parentId: "590611027-offset-601794870";
+    readonly __jbrowsefmt: {};
 };
-export declare const alignment: {
-    consensus: string;
-    alns: {
-        id: string;
-        seq: string;
-    }[];
+export declare const pairwiseAlignment: {
+    readonly consensus: "                                                                                                                                                                                                                                                                                                                                                                                                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ";
+    readonly alns: readonly [{
+        readonly id: "a";
+        readonly seq: "MGQKGHKDSLYPCGGTPESSLHEALDQCMTALDLFLTNQFSEALSYLKPRTKESMYHSLTYATILEMQAMMTFDPQDILLAGNMMKEAQMLCQRHRRKSSVTDSFSSLVNRPTLGQFTEEEIHAEVCYAECLLQRAALTFLQGSSHGGAVRPRALHDPSHACSCPPGPGRQHLFLLQDENMVSFIKGGIKVRNSYQTYKELDSLVQSSQYCKGENHPHFEGGVKLGVGAFNLTLSMLPTRILRLLEFVGFSGNKDYGLLQLEEGASGHSFRSVLCVMLLLCYHTFLTFVLGTGNVNIEEAEKLLKPYLNRYPKGAIFLFFAGRIEVIKGNIDAAIRRFEECCEAQQHWKQFHHMCYWELMWCFTYKGQWKMSYFYADLLSKENCWSKATYIYMKAAYLSMFGKEDHKPFGDDEVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEMLEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPNALLELALLLMEQDRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSLENSSRSMVSSVSL-";
+    }, {
+        readonly id: "b";
+        readonly seq: "--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKAAYLSMFGKEDHKPFGDDEVELFRAVPGLKLKIAGKSLPTEKFAIRKSRRYFSSNPISLPVPALEMMYIWNGYAVIGKQPKLTDGILEIITKAEEMLEKGPENEYSVDDECLVKLLKGLCLKYLGRVQEAEENFRSISANEKKIKYDHYLIPNALLELALLLMEQDRNEEAIKLLESAKQNYKNYSMESRTHFRIQAATLQAKSSLENSSRSMVSSVSL*";
+    }];
 };

package/dist/test_data/gene.js

@@ -587,7 +587,7 @@ export const feature = {
     parentId: '590611027-offset-601794870',
     __jbrowsefmt: {},
 };
-export const alignment = {
+export const pairwiseAlignment = {
     consensus: '                                                                                                                                                                                                                                                                                                                                                                                                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ',
     alns: [
         {