jbrowse-plugin-msaview 2.2.11 → 2.3.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddHighlightModel/index.d.ts +1 -1
- package/dist/AddHighlightModel/index.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.d.ts +2 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js +1 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/configSchema.d.ts +1 -1
- package/dist/BgzipFastaMsaAdapter/configSchema.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/index.d.ts +1 -1
- package/dist/BgzipFastaMsaAdapter/index.js.map +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.d.ts +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js.map +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.js.map +1 -1
- package/dist/LaunchMsaView/components/LaunchMsaViewDialog.d.ts +1 -1
- package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.d.ts +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/launchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/launchView.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.d.ts +1 -2
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js +21 -14
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js +32 -35
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js +2 -2
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.d.ts +2 -0
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.js +1 -0
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +6 -8
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.d.ts +2 -2
- package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js.map +1 -1
- package/dist/LaunchMsaView/components/TranscriptSelector.d.ts +3 -3
- package/dist/LaunchMsaView/components/TranscriptSelector.js +4 -4
- package/dist/LaunchMsaView/components/TranscriptSelector.js.map +1 -1
- package/dist/LaunchMsaView/components/useTranscriptSelection.d.ts +1 -1
- package/dist/LaunchMsaView/components/useTranscriptSelection.js +1 -2
- package/dist/LaunchMsaView/components/useTranscriptSelection.js.map +1 -1
- package/dist/LaunchMsaView/components/util.js +1 -1
- package/dist/LaunchMsaView/components/util.js.map +1 -1
- package/dist/LaunchMsaView/index.d.ts +1 -1
- package/dist/LaunchMsaView/index.js.map +1 -1
- package/dist/LaunchMsaView/util.d.ts +1 -0
- package/dist/LaunchMsaView/util.js +10 -0
- package/dist/LaunchMsaView/util.js.map +1 -1
- package/dist/MsaViewPanel/afterCreateAutoruns.d.ts +10 -0
- package/dist/MsaViewPanel/afterCreateAutoruns.js +258 -0
- package/dist/MsaViewPanel/afterCreateAutoruns.js.map +1 -0
- package/dist/MsaViewPanel/blosum62.d.ts +2 -0
- package/dist/MsaViewPanel/blosum62.js +628 -0
- package/dist/MsaViewPanel/blosum62.js.map +1 -0
- package/dist/MsaViewPanel/components/LoadingBLAST.d.ts +1 -1
- package/dist/MsaViewPanel/components/LoadingBLAST.js.map +1 -1
- package/dist/MsaViewPanel/components/MsaViewPanel.d.ts +1 -1
- package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
- package/dist/MsaViewPanel/doLaunchBlast.d.ts +1 -1
- package/dist/MsaViewPanel/doLaunchBlast.js.map +1 -1
- package/dist/MsaViewPanel/genomeToMSA.d.ts +1 -1
- package/dist/MsaViewPanel/genomeToMSA.js.map +1 -1
- package/dist/MsaViewPanel/index.d.ts +1 -1
- package/dist/MsaViewPanel/index.js.map +1 -1
- package/dist/MsaViewPanel/model.d.ts +25 -39
- package/dist/MsaViewPanel/model.js +17 -309
- package/dist/MsaViewPanel/model.js.map +1 -1
- package/dist/MsaViewPanel/msaDataStore.d.ts +3 -4
- package/dist/MsaViewPanel/msaDataStore.js +59 -173
- package/dist/MsaViewPanel/msaDataStore.js.map +1 -1
- package/dist/MsaViewPanel/pairwiseAlignment.d.ts +0 -7
- package/dist/MsaViewPanel/pairwiseAlignment.js +1 -636
- package/dist/MsaViewPanel/pairwiseAlignment.js.map +1 -1
- package/dist/MsaViewPanel/structureConnection.js +1 -5
- package/dist/MsaViewPanel/structureConnection.js.map +1 -1
- package/dist/MsaViewPanel/util.d.ts +1 -1
- package/dist/index.d.ts +1 -1
- package/dist/index.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.umd.production.min.js +30 -30
- package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
- package/dist/utils/msa.js +35 -77
- package/dist/utils/msa.js.map +1 -1
- package/dist/utils/ncbiBlast.js +1 -10
- package/dist/utils/ncbiBlast.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/version.js.map +1 -1
- package/package.json +30 -26
- package/src/AddHighlightModel/index.tsx +1 -1
- package/src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts +3 -4
- package/src/BgzipFastaMsaAdapter/configSchema.ts +2 -1
- package/src/BgzipFastaMsaAdapter/index.ts +2 -1
- package/src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx +2 -6
- package/src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.ts +2 -1
- package/src/LaunchMsaView/components/LaunchMsaViewDialog.tsx +2 -1
- package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +6 -7
- package/src/LaunchMsaView/components/ManualMSALoader/launchView.ts +5 -2
- package/src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx +22 -17
- package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx +40 -52
- package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx +6 -13
- package/src/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.ts +2 -1
- package/src/LaunchMsaView/components/NCBIBlastQuery/consts.ts +2 -0
- package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +7 -19
- package/src/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.ts +2 -2
- package/src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts +1 -2
- package/src/LaunchMsaView/components/TranscriptSelector.tsx +7 -6
- package/src/LaunchMsaView/components/useTranscriptSelection.ts +1 -6
- package/src/LaunchMsaView/components/util.ts +1 -1
- package/src/LaunchMsaView/index.ts +6 -5
- package/src/LaunchMsaView/util.ts +11 -0
- package/src/MsaViewPanel/afterCreateAutoruns.ts +299 -0
- package/src/MsaViewPanel/blosum62.ts +628 -0
- package/src/MsaViewPanel/components/LoadingBLAST.tsx +2 -1
- package/src/MsaViewPanel/components/MsaViewPanel.tsx +2 -1
- package/src/MsaViewPanel/doLaunchBlast.ts +1 -1
- package/src/MsaViewPanel/genomeToMSA.ts +2 -1
- package/src/MsaViewPanel/index.ts +2 -1
- package/src/MsaViewPanel/model.ts +30 -392
- package/src/MsaViewPanel/msaDataStore.ts +56 -196
- package/src/MsaViewPanel/pairwiseAlignment.ts +1 -637
- package/src/MsaViewPanel/structureConnection.ts +1 -5
- package/src/MsaViewPanel/util.ts +1 -1
- package/src/index.ts +4 -2
- package/src/utils/msa.ts +45 -100
- package/src/utils/ncbiBlast.ts +3 -13
- package/src/version.ts +1 -1
- package/CHANGELOG.md +0 -101
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package/dist/index.d.ts
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package/dist/index.js.map
CHANGED
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