jbrowse-plugin-msaview 2.2.11 → 2.3.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddHighlightModel/index.d.ts +1 -1
- package/dist/AddHighlightModel/index.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.d.ts +2 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js +1 -1
- package/dist/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/configSchema.d.ts +1 -1
- package/dist/BgzipFastaMsaAdapter/configSchema.js.map +1 -1
- package/dist/BgzipFastaMsaAdapter/index.d.ts +1 -1
- package/dist/BgzipFastaMsaAdapter/index.js.map +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.d.ts +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js.map +1 -1
- package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.js.map +1 -1
- package/dist/LaunchMsaView/components/LaunchMsaViewDialog.d.ts +1 -1
- package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.d.ts +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.js.map +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/launchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/ManualMSALoader/launchView.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.d.ts +1 -2
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js +21 -14
- package/dist/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js +32 -35
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js +2 -2
- package/dist/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.js.map +1 -1
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.d.ts +2 -0
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.js +1 -0
- package/dist/LaunchMsaView/components/NCBIBlastQuery/consts.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.d.ts +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +6 -8
- package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.d.ts +2 -2
- package/dist/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.js.map +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts +1 -1
- package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js.map +1 -1
- package/dist/LaunchMsaView/components/TranscriptSelector.d.ts +3 -3
- package/dist/LaunchMsaView/components/TranscriptSelector.js +4 -4
- package/dist/LaunchMsaView/components/TranscriptSelector.js.map +1 -1
- package/dist/LaunchMsaView/components/useTranscriptSelection.d.ts +1 -1
- package/dist/LaunchMsaView/components/useTranscriptSelection.js +1 -2
- package/dist/LaunchMsaView/components/useTranscriptSelection.js.map +1 -1
- package/dist/LaunchMsaView/components/util.js +1 -1
- package/dist/LaunchMsaView/components/util.js.map +1 -1
- package/dist/LaunchMsaView/index.d.ts +1 -1
- package/dist/LaunchMsaView/index.js.map +1 -1
- package/dist/LaunchMsaView/util.d.ts +1 -0
- package/dist/LaunchMsaView/util.js +10 -0
- package/dist/LaunchMsaView/util.js.map +1 -1
- package/dist/MsaViewPanel/afterCreateAutoruns.d.ts +10 -0
- package/dist/MsaViewPanel/afterCreateAutoruns.js +258 -0
- package/dist/MsaViewPanel/afterCreateAutoruns.js.map +1 -0
- package/dist/MsaViewPanel/blosum62.d.ts +2 -0
- package/dist/MsaViewPanel/blosum62.js +628 -0
- package/dist/MsaViewPanel/blosum62.js.map +1 -0
- package/dist/MsaViewPanel/components/LoadingBLAST.d.ts +1 -1
- package/dist/MsaViewPanel/components/LoadingBLAST.js.map +1 -1
- package/dist/MsaViewPanel/components/MsaViewPanel.d.ts +1 -1
- package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
- package/dist/MsaViewPanel/doLaunchBlast.d.ts +1 -1
- package/dist/MsaViewPanel/doLaunchBlast.js.map +1 -1
- package/dist/MsaViewPanel/genomeToMSA.d.ts +1 -1
- package/dist/MsaViewPanel/genomeToMSA.js.map +1 -1
- package/dist/MsaViewPanel/index.d.ts +1 -1
- package/dist/MsaViewPanel/index.js.map +1 -1
- package/dist/MsaViewPanel/model.d.ts +25 -39
- package/dist/MsaViewPanel/model.js +17 -309
- package/dist/MsaViewPanel/model.js.map +1 -1
- package/dist/MsaViewPanel/msaDataStore.d.ts +3 -4
- package/dist/MsaViewPanel/msaDataStore.js +59 -173
- package/dist/MsaViewPanel/msaDataStore.js.map +1 -1
- package/dist/MsaViewPanel/pairwiseAlignment.d.ts +0 -7
- package/dist/MsaViewPanel/pairwiseAlignment.js +1 -636
- package/dist/MsaViewPanel/pairwiseAlignment.js.map +1 -1
- package/dist/MsaViewPanel/structureConnection.js +1 -5
- package/dist/MsaViewPanel/structureConnection.js.map +1 -1
- package/dist/MsaViewPanel/util.d.ts +1 -1
- package/dist/index.d.ts +1 -1
- package/dist/index.js.map +1 -1
- package/dist/jbrowse-plugin-msaview.umd.production.min.js +30 -30
- package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
- package/dist/utils/msa.js +35 -77
- package/dist/utils/msa.js.map +1 -1
- package/dist/utils/ncbiBlast.js +1 -10
- package/dist/utils/ncbiBlast.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/version.js.map +1 -1
- package/package.json +30 -26
- package/src/AddHighlightModel/index.tsx +1 -1
- package/src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts +3 -4
- package/src/BgzipFastaMsaAdapter/configSchema.ts +2 -1
- package/src/BgzipFastaMsaAdapter/index.ts +2 -1
- package/src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx +2 -6
- package/src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.ts +2 -1
- package/src/LaunchMsaView/components/LaunchMsaViewDialog.tsx +2 -1
- package/src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx +6 -7
- package/src/LaunchMsaView/components/ManualMSALoader/launchView.ts +5 -2
- package/src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx +22 -17
- package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx +40 -52
- package/src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx +6 -13
- package/src/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.ts +2 -1
- package/src/LaunchMsaView/components/NCBIBlastQuery/consts.ts +2 -0
- package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +7 -19
- package/src/LaunchMsaView/components/PreLoadedMSA/fetchMSAData.ts +2 -2
- package/src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts +1 -2
- package/src/LaunchMsaView/components/TranscriptSelector.tsx +7 -6
- package/src/LaunchMsaView/components/useTranscriptSelection.ts +1 -6
- package/src/LaunchMsaView/components/util.ts +1 -1
- package/src/LaunchMsaView/index.ts +6 -5
- package/src/LaunchMsaView/util.ts +11 -0
- package/src/MsaViewPanel/afterCreateAutoruns.ts +299 -0
- package/src/MsaViewPanel/blosum62.ts +628 -0
- package/src/MsaViewPanel/components/LoadingBLAST.tsx +2 -1
- package/src/MsaViewPanel/components/MsaViewPanel.tsx +2 -1
- package/src/MsaViewPanel/doLaunchBlast.ts +1 -1
- package/src/MsaViewPanel/genomeToMSA.ts +2 -1
- package/src/MsaViewPanel/index.ts +2 -1
- package/src/MsaViewPanel/model.ts +30 -392
- package/src/MsaViewPanel/msaDataStore.ts +56 -196
- package/src/MsaViewPanel/pairwiseAlignment.ts +1 -637
- package/src/MsaViewPanel/structureConnection.ts +1 -5
- package/src/MsaViewPanel/util.ts +1 -1
- package/src/index.ts +4 -2
- package/src/utils/msa.ts +45 -100
- package/src/utils/ncbiBlast.ts +3 -13
- package/src/version.ts +1 -1
- package/CHANGELOG.md +0 -101
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import PluginManager from '@jbrowse/core/PluginManager';
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import type PluginManager from '@jbrowse/core/PluginManager';
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export default function AddHighlightComponentsModelF(pluginManager: PluginManager): void;
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddHighlightModel/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddHighlightModel/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AAKvD,MAAM,CAAC,OAAO,UAAU,4BAA4B,CAClD,aAA4B;IAE5B,aAAa,CAAC,mBAAmB,CAC/B,2CAA2C;IAC3C,mBAAmB;IACnB,CAAC,IAAuB,EAAE,EAAE,KAAK,EAAoC,EAAE,EAAE;QACvE,8DAA8D;QAC9D,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;QACnC,MAAM,UAAU,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,SAAS,CAAC,CAAA;QACxD,IAAI,CAAC,UAAU,EAAE,CAAC;YAChB,OAAO,IAAI,CAAA;QACb,CAAC;QAED,OAAO;YACL,GAAG,IAAI;YACP,oBAAC,mBAAmB,IAClB,GAAG,EAAC,kCAAkC,EACtC,KAAK,EAAE,KAAK,GACZ;SACH,CAAA;IACH,CAAC,CACF,CAAA;AACH,CAAC"}
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import { BaseAdapter
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import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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import type { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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export default class BgzipFastaMsaAdapter extends BaseAdapter {
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configureP: Promise<BaseFeatureDataAdapter> | undefined;
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refNamesP: Promise<string[]> | undefined;
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import { readConfObject } from '@jbrowse/core/configuration';
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import { BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
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export default class BgzipFastaMsaAdapter extends BaseAdapter {
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async configurePre() {
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{"version":3,"file":"BgzipFastaMsaAdapter.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,
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{"version":3,"file":"BgzipFastaMsaAdapter.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/BgzipFastaMsaAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,yCAAyC,CAAA;AACrE,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAI9C,MAAM,CAAC,OAAO,OAAO,oBAAqB,SAAQ,WAAW;IAK3D,KAAK,CAAC,YAAY;QAChB,MAAM,aAAa,GAAG,IAAI,CAAC,aAAa,CAAA;QACxC,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,OAAO,GAAG,MAAM,aAAa,CAAC;gBAClC,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,CAAC;gBAC9B,IAAI,EAAE,mBAAmB;aAC1B,CAAC,CAAA;YAEF,OAAO,OAAO,CAAC,WAAqC,CAAA;QACtD,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAA;QACtC,CAAC;IACH,CAAC;IACD,SAAS;QACP,IAAI,CAAC,UAAU,KAAK,IAAI,CAAC,YAAY,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;YAC3D,IAAI,CAAC,UAAU,GAAG,SAAS,CAAA;YAC3B,MAAM,CAAC,CAAA;QACT,CAAC,CAAC,CAAA;QACF,OAAO,IAAI,CAAC,UAAU,CAAA;IACxB,CAAC;IAED,KAAK,CAAC,UAAU;QACd,IAAI,CAAC,SAAS,KAAK,IAAI,CAAC,SAAS,EAAE;aAChC,IAAI,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC;aACtC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;YACpB,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;YAC1B,MAAM,CAAC,CAAA;QACT,CAAC,CAAC,CAAA;QACJ,OAAO,IAAI,CAAC,SAAS,CAAA;IACvB,CAAC;IAED,KAAK,CAAC,UAAU;QACd,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,UAAU,EAAE,CAAA;QACxC,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAA;QAC9B,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;QACpC,MAAM,EAAE,GAAG,IAAI,MAAM,CAAC,GAAG,CAAC,CAAA;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAChD,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAC,CAAA;QACtC,CAAC;QACD,OAAO,CAAC,GAAG,IAAI,CAAC,CAAA;IAClB,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,EAAU;QACrB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,SAAS,EAAE,CAAA;QACtC,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,WAAW,EAAE,CAAA;QAC5C,MAAM,IAAI,GAAG,EAAE,CAAA;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAChD,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;YAC5B,IAAI,OAAO,CAAC,UAAU,CAAC,EAAE,CAAC,EAAE,CAAC;gBAC3B,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;YACpB,CAAC;QACH,CAAC;QACD,OAAO,cAAc,CACnB,OAAO;aACJ,4BAA4B,CAC3B,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;YACnB,OAAO;YACP,KAAK,EAAE,CAAC;YACR,GAAG,EAAE,aAAa;YAClB,YAAY,EAAE,EAAE;SACjB,CAAC,CAAC,CACJ;aACA,IAAI,CAAC,OAAO,EAAE,CAAC,CACnB,CAAA;IACH,CAAC;CACF"}
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import type PluginManager from '@jbrowse/core/PluginManager';
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export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/configSchema.ts"],"names":[],"mappings":"
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{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAIjE,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,aAA4B;IAChE,MAAM,IAAI,GAAG,aAAa,CAAC,cAAc,CAAC,mBAAmB,CAAC,CAAA;IAC9D,OAAO,mBAAmB,CACxB,sBAAsB,EACtB;QACE,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,GAAG;SAClB;KACF,EACD;QACE,iBAAiB,EAAE,IAAI,EAAE,YAAY;KACtC,CACF,CAAA;AACH,CAAC"}
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export default function BgzipFastaMsaAdapterF(pluginManager: PluginManager): PluginManager;
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/index.ts"],"names":[],"mappings":"
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BgzipFastaMsaAdapter/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,qCAAqC,CAAA;AAEjE,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAI1C,MAAM,CAAC,OAAO,UAAU,qBAAqB,CAAC,aAA4B;IACxE,OAAO,aAAa,CAAC,cAAc,CAAC,GAAG,EAAE;QACvC,OAAO,IAAI,WAAW,CAAC;YACrB,IAAI,EAAE,sBAAsB;YAC5B,YAAY,EAAE,aAAa,CAAC,aAAa,CAAC;YAC1C,eAAe,EAAE;gBACf,aAAa,EAAE,IAAI;aACpB;YACD,eAAe,EAAE,GAAG,EAAE,CACpB,MAAM,CAAC,wBAAwB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;SACxD,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC"}
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{"version":3,"file":"EnsemblGeneTree.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,
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{"version":3,"file":"EnsemblGeneTree.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAC1E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,yBAAyB,EAAE,MAAM,6BAA6B,CAAA;AACvE,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAA;AAC3C,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAC/C,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAKlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;QACb,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,GAAG,EAAE,EAAE;KACR;CACF,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,EAAE,oBAAoB,GAC5B,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAC7C,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,WAAW,CAAC,UAAU,CAAC,CAAA;IAEtE,MAAM,cAAc,GAAG,aAAa;QAClC,CAAC,CAAC,yCAAyC;QAC3C,CAAC,CAAC,SAAS,CAAA;IACb,MAAM,CAAC,GAAG,SAAS,IAAI,eAAe,IAAI,oBAAoB,CAAA;IAE9D,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YACrC,cAAc,CAAC,CAAC,CAAC,oBAAC,eAAe,IAAC,OAAO,EAAE,cAAc,GAAI,CAAC,CAAC,CAAC,IAAI;YACpE,QAAQ,CAAC,CAAC,CAAC,CACV;gBACE;;oBAAsC,QAAQ,CAAC,UAAU,CAAO;gBAChE,oBAAC,IAAI,IACH,MAAM,EAAC,QAAQ,EACf,IAAI,EAAE,sDAAsD,QAAQ,CAAC,UAAU,EAAE;;oBAE5E,QAAQ,CAAC,UAAU;kCACnB,CACH,CACP,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC,CACY;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,IAAI,CAAC,QAAQ,EAAE,CAAC;4BACd,OAAM;wBACR,CAAC;wBACD,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAE7B,yBAAyB,CAAC;4BACxB,OAAO;4BACP,IAAI;4BACJ,OAAO;4BACP,YAAY,EAAE,kBAAkB,CAAC,OAAO,CAAC;4BACzC,IAAI,EAAE,QAAQ;yBACf,CAAC,CAAA;wBACF,WAAW,EAAE,CAAA;oBACf,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;oBACvB,CAAC;gBACH,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
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@@ -1 +1 @@
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{"version":3,"file":"ensemblGeneTreeUtils.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAA;
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1
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+
{"version":3,"file":"ensemblGeneTreeUtils.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAA;AACnE,OAAO,EAAE,0BAA0B,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAA;AAIzE,MAAM,IAAI,GAAG,0BAA0B,CAAA;AAEvC,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,GAAW;IAC/C,MAAM,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;IAClC,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,0BAA0B,CAAC,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,CACzE,SAAS,CACP,GAAG,IAAI,cAAc,EAAE,gCAAgC,CACxD,CACF,CAAA;IACD,MAAM,QAAQ,GAAG,GAAG,IAAI,uBAAuB,OAAO,IAAI,EAAE,EAAE,CAAA;IAC9D,MAAM,cAAc,GAAG,MAAM,0BAA0B,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,EAAE,CACxE,SAAS,CACP,GAAG,QAAQ,uDAAuD,CACnE,CACF,CAAA;IAED,6EAA6E;IAC7E,iBAAiB;IACjB,MAAM,IAAI,GAAG,MAAM,0BAA0B,CAAS,GAAG,EAAE,OAAO,EAAE,GAAG,EAAE,CACvE,SAAS,CAAC,GAAG,QAAQ,0CAA0C,CAAC,CACjE,CAAA;IAED,MAAM,GAAG,GAAG,uBAAuB,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;IACxD,OAAO;QACL,UAAU,EAAE,cAAc,CAAC,EAAE;QAC7B,IAAI;QACJ,GAAG,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QAClD,YAAY,EAAE,IAAI,CAAC,SAAS,CAC1B,MAAM,CAAC,WAAW,CAChB,GAAG,CAAC,GAAG,CACL,CAAC,CAAC,EAAE,CACF;YACE,CAAC,CAAC,EAAE;YACJ;gBACE,MAAM,EAAE,CAAC,CAAC,OAAO;aAClB;SACO,CACb,CACF,CACF;KACF,CAAA;AACH,CAAC"}
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@@ -1,5 +1,5 @@
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1
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import React from 'react';
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-
import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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+
import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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3
|
export default function LaunchMsaViewDialog({ handleClose, feature, model, }: {
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4
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handleClose: () => void;
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5
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feature: Feature;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"LaunchMsaViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/LaunchMsaViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,
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1
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+
{"version":3,"file":"LaunchMsaViewDialog.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/LaunchMsaViewDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,eAAe,MAAM,mCAAmC,CAAA;AAC/D,OAAO,eAAe,MAAM,mCAAmC,CAAA;AAC/D,OAAO,cAAc,MAAM,iCAAiC,CAAA;AAC5D,OAAO,YAAY,MAAM,sCAAsC,CAAA;AAC/D,OAAO,QAAQ,MAAM,YAAY,CAAA;AAKjC,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAAA;IAC3B,MAAM,QAAQ,GAAG,cAAc,CAAC,OAAO,EAAE,CAAC,KAAK,EAAE,UAAU,CAAC,CAE/C,CAAA;IACb,MAAM,oBAAoB,GAAG,QAAQ,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAA;IAE5D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,YAAY,CAAC,CAAA;IAEhD,MAAM,YAAY,GAAG,CAAC,MAA4B,EAAE,QAAgB,EAAE,EAAE;QACtE,QAAQ,CAAC,QAAQ,CAAC,CAAA;IACpB,CAAC,CAAA;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAC,iBAAiB,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QACrE,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,YAAY;YACxC,oBAAC,GAAG,IAAC,KAAK,EAAC,kBAAkB,EAAC,KAAK,EAAC,YAAY,GAAG;YAClD,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,GAAG,IAAC,KAAK,EAAC,yBAAyB,EAAC,KAAK,EAAC,eAAe,GAAG,CAC9D,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,GAAG,IAAC,KAAK,EAAC,kBAAkB,EAAC,KAAK,EAAC,kBAAkB,GAAG;YACzD,oBAAC,GAAG,IAAC,KAAK,EAAC,eAAe,EAAC,KAAK,EAAC,YAAY,GAAG,CAC3C;QACP,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,cAAc,IACb,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,KAAK,GACZ,CACO;QACV,oBAAoB,CAAC,CAAC,CAAC,CACtB,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,eAAe;YAC3C,oBAAC,YAAY,IACX,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACZ,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,kBAAkB;YAC9C,oBAAC,eAAe,IACd,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO;QACX,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAC,YAAY;YACxC,oBAAC,eAAe,IACd,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,OAAO,EAChB,WAAW,EAAE,WAAW,GACxB,CACO,CACJ,CACV,CAAA;AACH,CAAC"}
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@@ -1,5 +1,5 @@
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1
|
import React from 'react';
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2
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-
import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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2
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+
import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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3
3
|
declare const ManualMSALoader: ({ model, feature, handleClose, }: {
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4
4
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model: AbstractTrackModel;
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5
5
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feature: Feature;
|
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@@ -1,6 +1,6 @@
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1
1
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import React, { useState } from 'react';
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2
2
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import { ErrorMessage, FileSelector } from '@jbrowse/core/ui';
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3
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-
import { getContainingView, getSession
|
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3
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+
import { getContainingView, getSession } from '@jbrowse/core/util';
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4
4
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import { Alert, Button, DialogActions, DialogContent, FormControl, FormControlLabel, Radio, RadioGroup, } from '@mui/material';
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5
5
|
import { observer } from 'mobx-react';
|
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6
6
|
import { makeStyles } from 'tss-react/mui';
|
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@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ManualMSALoader.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,
|
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1
|
+
{"version":3,"file":"ManualMSALoader.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/ManualMSALoader.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EACL,KAAK,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAA;AACzC,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAC/C,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AASlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;CACF,CAAC,CAAA;AAEF,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACtD,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAkB,MAAM,CAAC,CAAA;IACvE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC5C,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtE,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxE,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACpD,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,EAAE,MAAM,GACd,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAE7C,MAAM,CAAC,GAAG,eAAe,IAAI,MAAM,CAAA;IACnC,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YACtC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;gBAC/B,oBAAC,UAAU,IACT,GAAG,QACH,KAAK,EAAE,WAAW,EAClB,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,cAAc,CAAC,KAAK,CAAC,MAAM,CAAC,KAAwB,CAAC,CAAA;oBACvD,CAAC;oBAED,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB;oBACF,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,YAAY,GAClB,CACS,CACD;YAEd,6BAAK,KAAK,EAAE,EAAE,YAAY,EAAE,EAAE,EAAE,IAC7B,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,CACxB,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,GAAG,EAAE;gBAC3B,oBAAC,YAAY,IACX,IAAI,EAAC,6EAA6E,EAClF,MAAM,QACN,QAAQ,EAAE,eAAe,EACzB,WAAW,EAAE,kBAAkB,GAC/B;gBACF,oBAAC,YAAY,IACX,IAAI,EAAC,oDAAoD,EACzD,MAAM,QACN,QAAQ,EAAE,gBAAgB,EAC1B,WAAW,EAAE,mBAAmB,GAChC,CACE,CACP,CAAC,CAAC,CAAC,CACF;gBACE,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,KAAK,EACV,SAAS,QACT,OAAO,EAAE,CAAC,EACV,KAAK,EAAE,EAAE,YAAY,EAAE,MAAM,EAAE,EAC/B,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,gBAAgB,EAC5B,KAAK,EAAE,OAAO,EACd,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBAChC,CAAC,GACD;gBACF,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,MAAM,EACX,SAAS,QACT,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,WAAW,EAAC,8BAA8B,EAC1C,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,WAAW,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;oBACjC,CAAC,GACD,CACD,CACJ,CACG;YAEN,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAEF,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,IAAI,EAAC,cAAc,EACnB,SAAS,QACT,QAAQ,QACR,KAAK,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,EACxB,WAAW,EAAC,6DAA6D,EACzE,UAAU,EAAC,uGAAuG,EAClH,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACrC,CAAC,GACD;YAED,CAAC,YAAY,CAAC,IAAI,EAAE,IAAI,CACvB,oBAAC,KAAK,IAAC,QAAQ,EAAC,SAAS,EAAC,KAAK,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,8JAI1C,CACT,CACa;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,QAAQ,EACN,CAAC,kBAAkB;oBACnB,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,eAAe,CAAC;oBAC5C,CAAC,WAAW,KAAK,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,EAE7C,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,IAAI,CAAC,kBAAkB,EAAE,CAAC;4BACxB,OAAM;wBACR,CAAC;wBAED,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,UAAU,CAAC;4BACT,OAAO;4BACP,YAAY,EAAE,kBAAkB,CAAC,kBAAkB,CAAC;4BACpD,IAAI;4BACJ,OAAO,EAAE,kBAAkB;4BAC3B,YAAY,EAAE,YAAY,CAAC,IAAI,EAAE,IAAI,SAAS;4BAC9C,GAAG,CAAC,WAAW,KAAK,MAAM;gCACxB,CAAC,CAAC;oCACE,aAAa,EAAE,eAAe;oCAC9B,cAAc,EAAE,gBAAgB;iCACjC;gCACH,CAAC,CAAC;oCACE,IAAI,EAAE;wCACJ,GAAG,EAAE,OAAO;wCACZ,IAAI,EAAE,QAAQ,IAAI,SAAS;qCAC5B;iCACF,CAAC;yBACP,CAAC,CAAA;wBAEF,WAAW,EAAE,CAAA;oBACf,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;oBACvB,CAAC;gBACH,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
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@@ -1,4 +1,4 @@
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1
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-
import { AbstractSessionModel, Feature, FileLocation } from '@jbrowse/core/util';
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import type { AbstractSessionModel, Feature, FileLocation } from '@jbrowse/core/util';
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import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
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3
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export declare function launchView({ session, newViewTitle, view, feature, msaFilehandle, treeFilehandle, querySeqName, data, }: {
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session: AbstractSessionModel;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"launchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/launchView.ts"],"names":[],"mappings":"
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1
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+
{"version":3,"file":"launchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/ManualMSALoader/launchView.ts"],"names":[],"mappings":"AAOA,MAAM,UAAU,UAAU,CAAC,EACzB,OAAO,EACP,YAAY,EACZ,IAAI,EACJ,OAAO,EACP,aAAa,EACb,cAAc,EACd,YAAY,EACZ,IAAI,GAaL;IACC,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE;QACzB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,YAAY;QACzB,eAAe,EAAE,IAAI,CAAC,EAAE;QACxB,gBAAgB,EAAE,OAAO,CAAC,MAAM,EAAE;QAClC,aAAa;QACb,cAAc;QACd,YAAY;QACZ,IAAI;KACL,CAAC,CAAA;AACJ,CAAC"}
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@@ -1,6 +1,5 @@
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1
1
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import React from 'react';
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2
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-
import { Feature } from '@jbrowse/core/util';
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3
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-
import type { AbstractTrackModel } from '@jbrowse/core/util';
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2
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+
import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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4
3
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declare const CachedBlastResults: ({ model, handleClose, feature, }: {
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5
4
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model: AbstractTrackModel;
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handleClose: () => void;
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@@ -1,20 +1,12 @@
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1
1
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import React, { useEffect, useMemo, useState } from 'react';
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2
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+
import { ErrorMessage } from '@jbrowse/core/ui';
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2
3
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import { getContainingView } from '@jbrowse/core/util';
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3
4
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import DeleteIcon from '@mui/icons-material/Delete';
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4
5
|
import { Button, IconButton, List, ListItem, ListItemButton, ListItemText, Typography, } from '@mui/material';
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5
6
|
import { observer } from 'mobx-react';
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6
7
|
import { blastLaunchViewFromCache } from './blastLaunchView';
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7
8
|
import { clearAllCachedResults, deleteCachedResult, getAllCachedResults, } from '../../../utils/blastCache';
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8
|
-
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9
|
-
const ids = [
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10
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-
feature.id(),
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11
|
-
feature.get('id'),
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12
|
-
feature.get('name'),
|
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13
|
-
feature.get('gene_id'),
|
|
14
|
-
feature.get('gene_name'),
|
|
15
|
-
].filter((id) => !!id);
|
|
16
|
-
return [...new Set(ids)];
|
|
17
|
-
}
|
|
9
|
+
import { getGeneIdentifiers } from '../../util';
|
|
18
10
|
function getResultDisplayName(result) {
|
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19
11
|
const parts = [];
|
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20
12
|
if (result.geneName) {
|
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@@ -31,6 +23,7 @@ function getResultDisplayName(result) {
|
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31
23
|
const CachedBlastResults = observer(function ({ model, handleClose, feature, }) {
|
|
32
24
|
const [results, setResults] = useState([]);
|
|
33
25
|
const [loading, setLoading] = useState(true);
|
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26
|
+
const [error, setError] = useState();
|
|
34
27
|
const view = getContainingView(model);
|
|
35
28
|
const geneIds = useMemo(() => getGeneIdentifiers(feature), [feature]);
|
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36
29
|
useEffect(() => {
|
|
@@ -44,16 +37,27 @@ const CachedBlastResults = observer(function ({ model, handleClose, feature, })
|
|
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44
37
|
}
|
|
45
38
|
catch (e) {
|
|
46
39
|
console.error(e);
|
|
40
|
+
setError(e);
|
|
47
41
|
}
|
|
48
42
|
})();
|
|
49
43
|
}, [geneIds]);
|
|
50
44
|
const handleDelete = async (id) => {
|
|
51
|
-
|
|
52
|
-
|
|
45
|
+
try {
|
|
46
|
+
await deleteCachedResult(id);
|
|
47
|
+
setResults(r => r.filter(result => result.id !== id));
|
|
48
|
+
}
|
|
49
|
+
catch (e) {
|
|
50
|
+
setError(e);
|
|
51
|
+
}
|
|
53
52
|
};
|
|
54
53
|
const handleClearAll = async () => {
|
|
55
|
-
|
|
56
|
-
|
|
54
|
+
try {
|
|
55
|
+
await clearAllCachedResults();
|
|
56
|
+
setResults([]);
|
|
57
|
+
}
|
|
58
|
+
catch (e) {
|
|
59
|
+
setError(e);
|
|
60
|
+
}
|
|
57
61
|
};
|
|
58
62
|
const handleUseCached = (cached) => {
|
|
59
63
|
blastLaunchViewFromCache({
|
|
@@ -63,6 +67,9 @@ const CachedBlastResults = observer(function ({ model, handleClose, feature, })
|
|
|
63
67
|
});
|
|
64
68
|
handleClose();
|
|
65
69
|
};
|
|
70
|
+
if (error) {
|
|
71
|
+
return React.createElement(ErrorMessage, { error: error });
|
|
72
|
+
}
|
|
66
73
|
if (loading) {
|
|
67
74
|
return React.createElement(Typography, null, "Loading cached results...");
|
|
68
75
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"CachedBlastResults.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3D,OAAO,
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1
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+
{"version":3,"file":"CachedBlastResults.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/CachedBlastResults.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3D,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,EACL,MAAM,EACN,UAAU,EACV,IAAI,EACJ,QAAQ,EACR,cAAc,EACd,YAAY,EACZ,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,wBAAwB,EAAE,MAAM,mBAAmB,CAAA;AAC5D,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,mBAAmB,GACpB,MAAM,2BAA2B,CAAA;AAClC,OAAO,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAM/C,SAAS,oBAAoB,CAAC,MAAyB;IACrD,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,IAAI,MAAM,CAAC,QAAQ,EAAE,CAAC;QACpB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAA;IAC7B,CAAC;IACD,IAAI,MAAM,CAAC,cAAc,IAAI,MAAM,CAAC,cAAc,KAAK,MAAM,CAAC,QAAQ,EAAE,CAAC;QACvE,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,CAAA;IACnC,CAAC;IACD,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,YAAY,IAAI,SAAS,CAAC,CAAA;IAC/D,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;AAC1B,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,EACL,WAAW,EACX,OAAO,GAKR;IACC,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAsB,EAAE,CAAC,CAAA;IAC/D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAE9D,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IAErE,SAAS,CAAC,GAAG,EAAE;QACb,mEAAmE;QACnE,CAAC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI,CAAC;gBACH,MAAM,MAAM,GAAG,MAAM,mBAAmB,EAAE,CAAA;gBAC1C,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,IAAI,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;gBACtE,UAAU,CAAC,KAAK,CAAC,CAAA;YACnB,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;YACb,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;IACN,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IAEb,MAAM,YAAY,GAAG,KAAK,EAAE,EAAU,EAAE,EAAE;QACxC,IAAI,CAAC;YACH,MAAM,kBAAkB,CAAC,EAAE,CAAC,CAAA;YAC5B,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,CAAA;QACvD,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,QAAQ,CAAC,CAAC,CAAC,CAAA;QACb,CAAC;IACH,CAAC,CAAA;IAED,MAAM,cAAc,GAAG,KAAK,IAAI,EAAE;QAChC,IAAI,CAAC;YACH,MAAM,qBAAqB,EAAE,CAAA;YAC7B,UAAU,CAAC,EAAE,CAAC,CAAA;QAChB,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,QAAQ,CAAC,CAAC,CAAC,CAAA;QACb,CAAC;IACH,CAAC,CAAA;IAED,MAAM,eAAe,GAAG,CAAC,MAAyB,EAAE,EAAE;QACpD,wBAAwB,CAAC;YACvB,IAAI;YACJ,MAAM;YACN,YAAY,EAAE,WAAW,oBAAoB,CAAC,MAAM,CAAC,EAAE;SACxD,CAAC,CAAA;QACF,WAAW,EAAE,CAAA;IACf,CAAC,CAAA;IAED,IAAI,KAAK,EAAE,CAAC;QACV,OAAO,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;IACvC,CAAC;IAED,IAAI,OAAO,EAAE,CAAC;QACZ,OAAO,oBAAC,UAAU,oCAAuC,CAAA;IAC3D,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO,CACL,oBAAC,UAAU,IAAC,KAAK,EAAC,eAAe,uFAGpB,CACd,CAAA;IACH,CAAC;IAED,OAAO,CACL;QACE,6BACE,KAAK,EAAE;gBACL,OAAO,EAAE,MAAM;gBACf,cAAc,EAAE,eAAe;gBAC/B,UAAU,EAAE,QAAQ;gBACpB,YAAY,EAAE,CAAC;aAChB;YAED,oBAAC,UAAU,IAAC,OAAO,EAAC,WAAW;;gBACN,OAAO,CAAC,MAAM;oBAC1B;YACb,oBAAC,MAAM,IACL,IAAI,EAAC,OAAO,EACZ,KAAK,EAAC,OAAO,EACb,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,cAAc,EAAE,CAAA;gBAClB,CAAC,gBAGM,CACL;QACN,oBAAC,IAAI,IAAC,KAAK,QAAC,KAAK,EAAE,EAAE,SAAS,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE,IACpD,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACrB,oBAAC,QAAQ,IACP,GAAG,EAAE,MAAM,CAAC,EAAE,EACd,cAAc,QACd,eAAe,EACb,oBAAC,UAAU,IACT,IAAI,EAAC,KAAK,EACV,IAAI,EAAC,OAAO,EACZ,OAAO,EAAE,CAAC,CAAC,EAAE;oBACX,CAAC,CAAC,eAAe,EAAE,CAAA;oBACnB,mEAAmE;oBACnE,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;gBACzB,CAAC;gBAED,oBAAC,UAAU,IAAC,QAAQ,EAAC,OAAO,GAAG,CACpB;YAGf,oBAAC,cAAc,IACb,OAAO,EAAE,GAAG,EAAE;oBACZ,eAAe,CAAC,MAAM,CAAC,CAAA;gBACzB,CAAC;gBAED,oBAAC,YAAY,IACX,OAAO,EAAE,GAAG,oBAAoB,CAAC,MAAM,CAAC,MAAM,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC,YAAY,KAAK,MAAM,CAAC,YAAY,GAAG,EACpH,SAAS,EAAE,GAAG,IAAI,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,cAAc,EAAE,WAAW,MAAM,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,GAC5G,CACa,CACR,CACZ,CAAC,CACG,CACH,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
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@@ -1,5 +1,5 @@
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1
1
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import React from 'react';
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2
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import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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declare const NCBIBlastAutomaticPanel: ({ handleClose, feature, model, children, baseUrl, }: {
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model: AbstractTrackModel;
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feature: Feature;
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@@ -1,37 +1,40 @@
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1
1
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import React, { useEffect, useMemo, useState } from 'react';
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2
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import { ErrorMessage } from '@jbrowse/core/ui';
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3
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-
import { getContainingView
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3
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+
import { getContainingView } from '@jbrowse/core/util';
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import ExpandMoreIcon from '@mui/icons-material/ExpandMore';
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import { Accordion, AccordionDetails, AccordionSummary, Button, DialogActions, DialogContent, MenuItem, Typography, } from '@mui/material';
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import { observer } from 'mobx-react';
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import { makeStyles } from 'tss-react/mui';
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import CachedBlastResults from './CachedBlastResults';
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import { blastLaunchView } from './blastLaunchView';
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import { msaAlgorithms } from './consts';
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import TextField2 from '../../../components/TextField2';
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import { getAllCachedResults } from '../../../utils/blastCache';
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-
import { getGeneDisplayName, getTranscriptDisplayName } from '../../util';
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import { getGeneDisplayName, getGeneIdentifiers, getTranscriptDisplayName, } from '../../util';
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import TranscriptSelector from '../TranscriptSelector';
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import { useTranscriptSelection } from '../useTranscriptSelection';
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function getGeneIdentifiers(feature) {
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const ids = [
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feature.id(),
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feature.get('id'),
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feature.get('name'),
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feature.get('gene_id'),
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feature.get('gene_name'),
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].filter((id) => !!id);
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return [...new Set(ids)];
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}
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const useStyles = makeStyles()({
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dialogContent: {
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width: '80em',
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},
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-
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selectField: {
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width: 150,
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},
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databaseFieldContainer: {
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display: 'flex',
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},
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clusterSeqMessage: {
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+
marginLeft: 4,
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alignContent: 'center',
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},
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cachedResultsAccordion: {
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marginTop: 20,
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},
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infoText: {
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marginTop: 20,
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},
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});
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const blastDatabaseOptions = ['nr', 'nr_cluster_seq'];
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-
const msaAlgorithms = ['clustalo', 'muscle', 'kalign', 'mafft'];
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38
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const blastPrograms = ['blastp', 'quick-blastp'];
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const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model, children, baseUrl, }) {
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37
40
|
const { classes } = useStyles();
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@@ -58,34 +61,30 @@ const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model
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})();
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}, [geneIds]);
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63
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const { options, selectedId, setSelectedId, selectedTranscript, proteinSequence, error: proteinSequenceError, } = useTranscriptSelection({ feature, view });
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-
useEffect(() => {
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-
if (selectedBlastDatabase === 'nr_cluster_seq') {
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setSelectedBlastProgram('blastp');
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}
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}, [selectedBlastDatabase]);
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const e = proteinSequenceError ?? launchViewError ?? error;
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-
const style = { width: 150 };
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return (React.createElement(React.Fragment, null,
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React.createElement(DialogContent, { className: classes.dialogContent },
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children,
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e ? React.createElement(ErrorMessage, { error: e }) : null,
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React.createElement(TextField2, { variant: "outlined", label: "BLAST database",
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73
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-
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+
React.createElement(TextField2, { variant: "outlined", label: "BLAST database", className: classes.selectField, select: true, value: selectedBlastDatabase, onChange: event => {
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const newDb = event.target
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+
.value;
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setSelectedBlastDatabase(newDb);
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if (newDb === 'nr_cluster_seq') {
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+
setSelectedBlastProgram('blastp');
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+
}
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} }, blastDatabaseOptions.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
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75
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-
React.createElement(TextField2, { variant: "outlined", label: "MSA Algorithm",
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+
React.createElement(TextField2, { variant: "outlined", label: "MSA Algorithm", className: classes.selectField, select: true, value: selectedMsaAlgorithm, onChange: event => {
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76
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setSelectedMsaAlgorithm(event.target.value);
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} }, msaAlgorithms.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
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78
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-
React.createElement("div", {
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-
React.createElement(TextField2, { variant: "outlined", label: "BLAST program", disabled: selectedBlastDatabase === 'nr_cluster_seq',
|
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80
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+
React.createElement("div", { className: classes.databaseFieldContainer },
|
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81
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+
React.createElement(TextField2, { variant: "outlined", label: "BLAST program", disabled: selectedBlastDatabase === 'nr_cluster_seq', className: classes.selectField, select: true, value: selectedBlastProgram, onChange: event => {
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80
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setSelectedBlastProgram(event.target.value);
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} }, blastPrograms.map(val => (React.createElement(MenuItem, { value: val, key: val }, val)))),
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82
|
-
selectedBlastDatabase === 'nr_cluster_seq' ? (React.createElement(Typography, { variant: "subtitle2",
|
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83
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-
marginLeft: 4,
|
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84
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-
alignContent: 'center',
|
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85
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-
} }, "Can only use blastp on nr_cluster_seq")) : null),
|
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84
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+
selectedBlastDatabase === 'nr_cluster_seq' ? (React.createElement(Typography, { variant: "subtitle2", className: classes.clusterSeqMessage }, "Can only use blastp on nr_cluster_seq")) : null),
|
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86
85
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React.createElement(TranscriptSelector, { feature: feature, options: options, selectedId: selectedId, selectedTranscript: selectedTranscript, onTranscriptChange: setSelectedId, proteinSequence: proteinSequence }),
|
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87
|
-
React.createElement(Typography, {
|
|
88
|
-
hasCachedResults ? (React.createElement(Accordion, {
|
|
86
|
+
React.createElement(Typography, { className: classes.infoText }, "This panel will automatically submit a query to NCBI. Using blastp can take 10+ minutes to run, quick-blastp is generally a lot faster but is not available for the clustered database. After completion, all the hits will be run through a multiple sequence alignment. Note: we are not able to currently run NCBI COBALT automatically on the BLAST results, even though that is the method NCBI uses on their website. If you need a COBALT alignment, please use the manual approach of submitting BLAST yourself and downloading the resulting files"),
|
|
87
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+
hasCachedResults ? (React.createElement(Accordion, { className: classes.cachedResultsAccordion },
|
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|
React.createElement(AccordionSummary, { expandIcon: React.createElement(ExpandMoreIcon, null) },
|
|
90
89
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React.createElement(Typography, null, "Previous BLAST Results")),
|
|
91
90
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React.createElement(AccordionDetails, null,
|
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@@ -117,9 +116,7 @@ const NCBIBlastAutomaticPanel = observer(function ({ handleClose, feature, model
|
|
|
117
116
|
}
|
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handleClose();
|
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|
}, disabled: !proteinSequence }, "Submit"),
|
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120
|
-
React.createElement(Button, { color: "secondary", variant: "contained", onClick:
|
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-
handleClose();
|
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} }, "Cancel"))));
|
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119
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+
React.createElement(Button, { color: "secondary", variant: "contained", onClick: handleClose }, "Cancel"))));
|
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});
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export default NCBIBlastAutomaticPanel;
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//# sourceMappingURL=NCBIBlastAutomaticPanel.js.map
|
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"NCBIBlastAutomaticPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3D,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,
|
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1
|
+
{"version":3,"file":"NCBIBlastAutomaticPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastAutomaticPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3D,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAC3D,OAAO,EACL,SAAS,EACT,gBAAgB,EAChB,gBAAgB,EAChB,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAA;AACnD,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AACxC,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAA;AAC/D,OAAO,EACL,kBAAkB,EAClB,kBAAkB,EAClB,wBAAwB,GACzB,MAAM,YAAY,CAAA;AACnB,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAMlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,KAAK,EAAE,GAAG;KACX;IACD,sBAAsB,EAAE;QACtB,OAAO,EAAE,MAAM;KAChB;IACD,iBAAiB,EAAE;QACjB,UAAU,EAAE,CAAC;QACb,YAAY,EAAE,QAAQ;KACvB;IACD,sBAAsB,EAAE;QACtB,SAAS,EAAE,EAAE;KACd;IACD,QAAQ,EAAE;QACR,SAAS,EAAE,EAAE;KACd;CACF,CAAC,CAAA;AAEF,MAAM,oBAAoB,GAAG,CAAC,IAAI,EAAE,gBAAgB,CAAU,CAAA;AAC9D,MAAM,aAAa,GAAG,CAAC,QAAQ,EAAE,cAAc,CAAU,CAAA;AAKzD,MAAM,uBAAuB,GAAG,QAAQ,CAAC,UAAU,EACjD,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GACrD,QAAQ,CAAwB,IAAI,CAAC,CAAA;IACvC,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,UAAU,CAAC,CAAA;IACpC,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAiB,cAAc,CAAC,CAAA;IAC1C,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAE7C,MAAM,OAAO,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IACrE,SAAS,CAAC,GAAG,EAAE;QACb,mEAAmE;QACnE,CAAC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI,CAAC;gBACH,MAAM,OAAO,GAAG,MAAM,mBAAmB,EAAE,CAAA;gBAC3C,mBAAmB,CACjB,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,IAAI,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAC1D,CAAA;YACH,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;YACb,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;IACN,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IAEb,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,EAAE,oBAAoB,GAC5B,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAC7C,MAAM,CAAC,GAAG,oBAAoB,IAAI,eAAe,IAAI,KAAK,CAAA;IAC1D,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,QAAQ;YACR,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YACtC,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,gBAAgB,EACtB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,qBAAqB,EAC5B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM;yBACvB,KAA8C,CAAA;oBACjD,wBAAwB,CAAC,KAAK,CAAC,CAAA;oBAC/B,IAAI,KAAK,KAAK,gBAAgB,EAAE,CAAC;wBAC/B,uBAAuB,CAAC,QAAQ,CAAC,CAAA;oBACnC,CAAC;gBACH,CAAC,IAEA,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAC/B,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,uBAAuB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;gBAC7D,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,6BAAK,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,QAAQ,EAAE,qBAAqB,KAAK,gBAAgB,EACpD,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;wBAChB,uBAAuB,CACrB,KAAK,CAAC,MAAM,CAAC,KAAuC,CACrD,CAAA;oBACH,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;gBACZ,qBAAqB,KAAK,gBAAgB,CAAC,CAAC,CAAC,CAC5C,oBAAC,UAAU,IACT,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,OAAO,CAAC,iBAAiB,4CAGzB,CACd,CAAC,CAAC,CAAC,IAAI,CACJ;YAEN,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAEF,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,QAAQ,kiBAS1B;YAEZ,gBAAgB,CAAC,CAAC,CAAC,CAClB,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,sBAAsB;gBAClD,oBAAC,gBAAgB,IAAC,UAAU,EAAE,oBAAC,cAAc,OAAG;oBAC9C,oBAAC,UAAU,iCAAoC,CAC9B;gBACnB,oBAAC,gBAAgB;oBACf,oBAAC,kBAAkB,IACjB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,OAAO,GAChB,CACe,CACT,CACb,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,IAAI,CAAC,kBAAkB,EAAE,CAAC;4BACxB,OAAM;wBACR,CAAC;wBACD,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,eAAe,CAAC;4BACd,OAAO,EAAE,kBAAkB;4BAC3B,IAAI;4BACJ,YAAY,EAAE,WAAW,kBAAkB,CAAC,OAAO,CAAC,MAAM,wBAAwB,CAAC,kBAAkB,CAAC,EAAE;4BACxG,WAAW,EAAE;gCACX,OAAO;gCACP,YAAY,EAAE,oBAAoB;gCAClC,aAAa,EAAE,qBAAqB;gCACpC,YAAY,EAAE,oBAAoB;gCAClC,kBAAkB;gCAClB,eAAe;6BAChB;yBACF,CAAC,CAAA;oBACJ,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;oBACvB,CAAC;oBAED,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,QAAQ,EAAE,CAAC,eAAe,aAGnB;YACT,oBAAC,MAAM,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,WAAW,aAEzD,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,uBAAuB,CAAA"}
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@@ -1,5 +1,5 @@
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1
1
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import React from 'react';
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2
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-
import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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2
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+
import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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3
3
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declare const NCBIBlastRIDPanel: ({ handleClose, feature, model, children, baseUrl, }: {
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4
4
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model: AbstractTrackModel;
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5
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feature: Feature;
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@@ -1,10 +1,11 @@
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1
1
|
import React, { useState } from 'react';
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2
2
|
import { ErrorMessage } from '@jbrowse/core/ui';
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3
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-
import { getContainingView
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3
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+
import { getContainingView } from '@jbrowse/core/util';
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4
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import { Button, DialogActions, DialogContent, MenuItem, Typography, } from '@mui/material';
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5
5
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import { observer } from 'mobx-react';
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6
6
|
import { makeStyles } from 'tss-react/mui';
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7
7
|
import { blastLaunchView } from './blastLaunchView';
|
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8
|
+
import { msaAlgorithms } from './consts';
|
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8
9
|
import ExternalLink from '../../../components/ExternalLink';
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9
10
|
import TextField2 from '../../../components/TextField2';
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10
11
|
import { getGeneDisplayName, getTranscriptDisplayName } from '../../util';
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@@ -15,7 +16,6 @@ const useStyles = makeStyles()({
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15
16
|
width: '80em',
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16
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},
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17
18
|
});
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18
|
-
const msaAlgorithms = ['clustalo', 'muscle', 'kalign', 'mafft'];
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19
19
|
const NCBIBlastRIDPanel = observer(function ({ handleClose, feature, model, children, baseUrl, }) {
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20
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const { classes } = useStyles();
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const view = getContainingView(model);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"NCBIBlastRIDPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,
|
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1
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+
{"version":3,"file":"NCBIBlastRIDPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/NCBIBlastRIDPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAA;AACnD,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AACxC,OAAO,YAAY,MAAM,kCAAkC,CAAA;AAC3D,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,kBAAkB,EAAE,wBAAwB,EAAE,MAAM,YAAY,CAAA;AACzE,OAAO,kBAAkB,MAAM,uBAAuB,CAAA;AACtD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAA;AAMlE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,WAAW,EACX,OAAO,EACP,KAAK,EACL,QAAQ,EACR,OAAO,GAOR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,EAAW,CAAA;IACjE,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAClC,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GACnD,QAAQ,CAAe,UAAU,CAAC,CAAA;IAEpC,MAAM,EACJ,OAAO,EACP,UAAU,EACV,aAAa,EACb,kBAAkB,EAClB,eAAe,EACf,KAAK,EAAE,oBAAoB,GAC5B,GAAG,sBAAsB,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;IAE7C,MAAM,CAAC,GAAG,oBAAoB,IAAI,eAAe,CAAA;IACjD,MAAM,KAAK,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,CAAA;IAC5B,MAAM,UAAU,GAAG,GAAG,CAAC,IAAI,EAAE,CAAA;IAE7B,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC5C,QAAQ;YACR,CAAC,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAAC,CAAC,CAAC,IAAI;YAEtC,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAE,EAAE,YAAY,EAAE,EAAE,EAAE,gOAK1C;YAEb,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,WAAW,EACjB,WAAW,EAAC,gBAAgB,EAC5B,SAAS,QACT,KAAK,EAAE,EAAE,YAAY,EAAE,EAAE,EAAE,EAC3B,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBAC5B,CAAC,GACD;YAED,UAAU,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,OAAO,EAAC,OAAO,EAAC,KAAK,EAAE,EAAE,YAAY,EAAE,EAAE,EAAE;gBACrD,oBAAC,YAAY,IAAC,IAAI,EAAE,GAAG,OAAO,gBAAgB,UAAU,EAAE,iCAE3C,CACJ,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,KAAK,EAAC,eAAe,EACrB,KAAK,EAAE,KAAK,EACZ,MAAM,QACN,KAAK,EAAE,oBAAoB,EAC3B,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,uBAAuB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAqB,CAAC,CAAA;gBAC7D,CAAC,IAEA,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;YAEb,oBAAC,kBAAkB,IACjB,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,OAAO,EAChB,UAAU,EAAE,UAAU,EACtB,kBAAkB,EAAE,kBAAkB,EACtC,kBAAkB,EAAE,aAAa,EACjC,eAAe,EAAE,eAAe,GAChC;YAEF,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,mNAIvB,CACC;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,CAAC;wBACH,IAAI,CAAC,kBAAkB,IAAI,CAAC,UAAU,EAAE,CAAC;4BACvC,OAAM;wBACR,CAAC;wBACD,kBAAkB,CAAC,SAAS,CAAC,CAAA;wBAC7B,eAAe,CAAC;4BACd,OAAO,EAAE,kBAAkB;4BAC3B,IAAI;4BACJ,YAAY,EAAE,WAAW,kBAAkB,CAAC,OAAO,CAAC,MAAM,wBAAwB,CAAC,kBAAkB,CAAC,EAAE;4BACxG,WAAW,EAAE;gCACX,OAAO;gCACP,YAAY,EAAE,QAAQ;gCACtB,aAAa,EAAE,IAAI;gCACnB,YAAY,EAAE,oBAAoB;gCAClC,kBAAkB;gCAClB,eAAe;gCACf,GAAG,EAAE,UAAU;6BAChB;yBACF,CAAC,CAAA;oBACJ,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;wBAChB,kBAAkB,CAAC,CAAC,CAAC,CAAA;oBACvB,CAAC;oBAED,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,QAAQ,EAAE,CAAC,eAAe,IAAI,CAAC,UAAU,aAGlC;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
|
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@@ -1,6 +1,6 @@
|
|
|
1
|
-
import { Feature } from '@jbrowse/core/util';
|
|
2
1
|
import type { JBrowsePluginMsaViewModel } from '../../../MsaViewPanel/model';
|
|
3
2
|
import type { CachedBlastResult } from '../../../utils/blastCache';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
4
4
|
import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
|
|
5
5
|
export declare function blastLaunchView({ newViewTitle, view, feature, blastParams, }: {
|
|
6
6
|
newViewTitle: string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"blastLaunchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/blastLaunchView.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
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+
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"consts.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/consts.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,cAAc,GAAG,0CAA0C,CAAA"}
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1
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+
{"version":3,"file":"consts.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NCBIBlastQuery/consts.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,cAAc,GAAG,0CAA0C,CAAA;AACxE,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,CAAU,CAAA"}
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@@ -1,5 +1,5 @@
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1
1
|
import React from 'react';
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2
|
-
import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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2
|
+
import type { AbstractTrackModel, Feature } from '@jbrowse/core/util';
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|
3
3
|
declare const PreLoadedMSA: ({ model, feature, handleClose, }: {
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4
4
|
model: AbstractTrackModel;
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|
5
5
|
feature: Feature;
|