jbrowse-plugin-msaview 2.0.5 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (124) hide show
  1. package/dist/AddHighlightModel/GenomeMouseoverHighlight.d.ts +1 -1
  2. package/dist/AddHighlightModel/GenomeMouseoverHighlight.js.map +1 -1
  3. package/dist/AddHighlightModel/HighlightComponents.d.ts +1 -1
  4. package/dist/AddHighlightModel/HighlightComponents.js +0 -1
  5. package/dist/AddHighlightModel/HighlightComponents.js.map +1 -1
  6. package/dist/AddHighlightModel/MsaToGenomeHighlight.d.ts +1 -1
  7. package/dist/AddHighlightModel/MsaToGenomeHighlight.js +0 -1
  8. package/dist/AddHighlightModel/MsaToGenomeHighlight.js.map +1 -1
  9. package/dist/AddHighlightModel/index.js +0 -1
  10. package/dist/AddHighlightModel/index.js.map +1 -1
  11. package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.d.ts +8 -0
  12. package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js +81 -0
  13. package/dist/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.js.map +1 -0
  14. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeLaunchView.d.ts +13 -0
  15. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeLaunchView.js +18 -0
  16. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeLaunchView.js.map +1 -0
  17. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.d.ts +5 -0
  18. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.js +35 -0
  19. package/dist/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.js.map +1 -0
  20. package/dist/LaunchMsaView/components/EnsemblGeneTree/fetchGeneList.d.ts +1 -0
  21. package/dist/LaunchMsaView/components/EnsemblGeneTree/fetchGeneList.js +12 -0
  22. package/dist/LaunchMsaView/components/EnsemblGeneTree/fetchGeneList.js.map +1 -0
  23. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.d.ts +4 -0
  24. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.js +38 -0
  25. package/dist/LaunchMsaView/components/EnsemblGeneTree/util.js.map +1 -0
  26. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js +20 -15
  27. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map +1 -1
  28. package/dist/LaunchMsaView/components/MSALoader/MSALoader.d.ts +8 -0
  29. package/dist/LaunchMsaView/components/MSALoader/MSALoader.js +94 -0
  30. package/dist/LaunchMsaView/components/MSALoader/MSALoader.js.map +1 -0
  31. package/dist/LaunchMsaView/components/MSALoader/fetchGeneList.d.ts +1 -0
  32. package/dist/LaunchMsaView/components/MSALoader/fetchGeneList.js +12 -0
  33. package/dist/LaunchMsaView/components/MSALoader/fetchGeneList.js.map +1 -0
  34. package/dist/LaunchMsaView/components/MSALoader/preCalculatedLaunchView.d.ts +9 -0
  35. package/dist/LaunchMsaView/components/MSALoader/preCalculatedLaunchView.js +36 -0
  36. package/dist/LaunchMsaView/components/MSALoader/preCalculatedLaunchView.js.map +1 -0
  37. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.js +6 -5
  38. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.js.map +1 -1
  39. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.d.ts +4 -12
  40. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js +2 -3
  41. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js.map +1 -1
  42. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.d.ts +8 -0
  43. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.js +23 -0
  44. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.js.map +1 -0
  45. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.d.ts +2 -2
  46. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.js.map +1 -1
  47. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.d.ts +10 -0
  48. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.js +2 -0
  49. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.js.map +1 -0
  50. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.d.ts +2 -6
  51. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js +1 -22
  52. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js.map +1 -1
  53. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +8 -11
  54. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
  55. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts +1 -1
  56. package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js.map +1 -1
  57. package/dist/LaunchMsaView/components/TabPanel.d.ts +6 -0
  58. package/dist/LaunchMsaView/components/TabPanel.js +6 -0
  59. package/dist/LaunchMsaView/components/TabPanel.js.map +1 -0
  60. package/dist/LaunchMsaView/index.js +0 -2
  61. package/dist/LaunchMsaView/index.js.map +1 -1
  62. package/dist/LaunchMsaView/util.js +2 -2
  63. package/dist/MsaViewPanel/components/LoadingBLAST.js +0 -1
  64. package/dist/MsaViewPanel/components/LoadingBLAST.js.map +1 -1
  65. package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
  66. package/dist/MsaViewPanel/components/RIDLink.js +0 -1
  67. package/dist/MsaViewPanel/components/RIDLink.js.map +1 -1
  68. package/dist/MsaViewPanel/index.js +0 -1
  69. package/dist/MsaViewPanel/index.js.map +1 -1
  70. package/dist/MsaViewPanel/model.d.ts +24 -11
  71. package/dist/MsaViewPanel/model.js +9 -1
  72. package/dist/MsaViewPanel/model.js.map +1 -1
  73. package/dist/MsaViewPanel/msaCoordToGenomeCoord.js.map +1 -1
  74. package/dist/OpenInNewIcon.d.ts +1 -1
  75. package/dist/OpenInNewIcon.js.map +1 -1
  76. package/dist/TextField2.d.ts +1 -1
  77. package/dist/TextField2.js.map +1 -1
  78. package/dist/config.json +8 -0
  79. package/dist/index.js +0 -2
  80. package/dist/index.js.map +1 -1
  81. package/dist/jbrowse-plugin-msaview.umd.production.min.js +52 -40
  82. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
  83. package/package.json +2 -2
  84. package/src/AddHighlightModel/GenomeMouseoverHighlight.tsx +2 -1
  85. package/src/AddHighlightModel/HighlightComponents.tsx +2 -2
  86. package/src/AddHighlightModel/MsaToGenomeHighlight.tsx +2 -3
  87. package/src/AddHighlightModel/index.tsx +2 -2
  88. package/src/LaunchMsaView/components/EnsemblGeneTree/EnsemblGeneTree.tsx +143 -0
  89. package/src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeLaunchView.ts +36 -0
  90. package/src/LaunchMsaView/components/EnsemblGeneTree/ensemblGeneTreeUtils.ts +81 -0
  91. package/src/LaunchMsaView/components/EnsemblGeneTree/fetchGeneList.ts +13 -0
  92. package/src/LaunchMsaView/components/EnsemblGeneTree/util.ts +45 -0
  93. package/src/LaunchMsaView/components/LaunchMsaViewDialog.tsx +30 -21
  94. package/src/LaunchMsaView/components/MSALoader/MSALoader.tsx +130 -0
  95. package/src/LaunchMsaView/components/MSALoader/fetchGeneList.ts +13 -0
  96. package/src/LaunchMsaView/components/MSALoader/preCalculatedLaunchView.ts +55 -0
  97. package/src/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.tsx +8 -6
  98. package/src/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.ts +6 -20
  99. package/src/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.ts +37 -0
  100. package/src/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.ts +2 -3
  101. package/src/LaunchMsaView/components/NewNCBIBlastQuery/types.ts +11 -0
  102. package/src/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.ts +5 -41
  103. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +12 -18
  104. package/src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts +2 -1
  105. package/src/LaunchMsaView/components/TabPanel.tsx +19 -0
  106. package/src/LaunchMsaView/index.ts +1 -4
  107. package/src/LaunchMsaView/util.ts +2 -2
  108. package/src/MsaViewPanel/components/LoadingBLAST.tsx +0 -2
  109. package/src/MsaViewPanel/components/MsaViewPanel.tsx +0 -1
  110. package/src/MsaViewPanel/components/RIDLink.tsx +0 -1
  111. package/src/MsaViewPanel/index.ts +0 -1
  112. package/src/MsaViewPanel/model.ts +14 -4
  113. package/src/MsaViewPanel/msaCoordToGenomeCoord.ts +0 -1
  114. package/src/OpenInNewIcon.tsx +3 -1
  115. package/src/TextField2.tsx +3 -1
  116. package/src/index.ts +0 -3
  117. package/dist/LaunchMsaView/components/TabUtils.d.ts +0 -8
  118. package/dist/LaunchMsaView/components/TabUtils.js +0 -7
  119. package/dist/LaunchMsaView/components/TabUtils.js.map +0 -1
  120. package/dist/LaunchMsaView/components/tabUtil.d.ts +0 -4
  121. package/dist/LaunchMsaView/components/tabUtil.js +0 -7
  122. package/dist/LaunchMsaView/components/tabUtil.js.map +0 -1
  123. package/src/LaunchMsaView/components/TabUtils.tsx +0 -25
  124. package/src/LaunchMsaView/components/tabUtil.ts +0 -6

There are too many changes on this page to be displayed.

The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.