npm - jbrowse-plugin-msaview - Versions diffs - 2.0.5 → 2.1.0 - Mend

jbrowse-plugin-msaview 2.0.5 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (124) hide show

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"NcbiBlastPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAGL,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;~~AAE3B~~,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC9E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,~~SAAS;AACT,~~OAAO,EAAE,kBAAkB,EAAE,MAAM,4BAA4B,CAAA;AAC/D,OAAO,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAA;AAC3D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAA;AACzD,OAAO,UAAU,MAAM,qBAAqB,CAAA;AAC5C,OAAO,EACL,kBAAkB,EAClB,KAAK,EACL,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,YAAY,CAAA;~~AAEnB~~,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACvD,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,UAAU,CAAC,CAAA;IAE5D,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAC9C,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,aAAa,CAAE,CAAA;IAC7E,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,kBAAkB,CAAC;QAC7C,IAAI;QACJ,OAAO,EAAE,kBAAkB;KAC5B,CAAC,CAAA;IACF,MAAM,eAAe,GACnB,QAAQ,IAAI,CAAC,CAAC,OAAO,IAAI,QAAQ,CAAC;QAChC,CAAC,CAAC,kBAAkB,CAAC;YACjB,GAAG,EAAE,QAAQ,CAAC,GAAG;YACjB,kBAAkB;SACnB,CAAC;QACJ,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,oBAAoB,GAAG,CAAC,IAAI,EAAE,gBAAgB,CAAC,CAAA;IACrD,MAAM,aAAa,GAAG,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;IAC/D,OAAO,CACL,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;QAC5C,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC9C,oBAAC,UAAU,IACT,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACtC,CAAC,EACD,KAAK,EAAC,qBAAqB,EAC3B,MAAM,UAEL,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAC/B,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;QAEb,oBAAC,UAAU,IACT,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACrC,CAAC,EACD,KAAK,EAAC,eAAe,EACrB,MAAM,UAEL,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;QAEb,oBAAC,UAAU,IACT,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACtC,CAAC,EACD,KAAK,EAAC,yBAAyB,EAC/B,MAAM,UAEL,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAClB,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE;YACvC,kBAAkB,CAAC,OAAO,CAAC;;YAAK,wBAAwB,CAAC,GAAG,CAAC,CACrD,CACZ,CAAC,CACS;QACb,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,SAAS,QACT,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,KAAK,EACH,eAAe;gBACb,CAAC,CAAC,IAAI,wBAAwB,CAAC,kBAAkB,CAAC,KAAK,eAAe,EAAE;gBACxE,CAAC,CAAC,YAAY,EAElB,~~UAAU~~,EAAE;~~gBACV~~,QAAQ,EAAE,IAAI;~~gBACd~~,OAAO,EAAE;~~oBACP~~,KAAK,EAAE,OAAO,CAAC,YAAY;~~iBAC5B~~;aACF,GACD;QAEF,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,MAAM,OAAO,GAAG,mBAAmB,CAAC;wBAClC,OAAO,EAAE,kBAAkB;wBAC3B,IAAI;wBACJ,YAAY,EAAE,gBAAgB,kBAAkB,CAAC,OAAO,CAAC,MAAM,wBAAwB,CAAC,kBAAkB,CAAC,MAAM,YAAY,EAAE;qBAChI,CAAC,CAAA;oBACF,OAAO,CAAC,cAAc,CAAC;wBACrB,YAAY,EAAE,QAAQ;wBACtB,aAAa;wBACb,YAAY;wBACZ,kBAAkB;wBAClB,eAAe;qBAChB,CAAC,CAAA;oBACF,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,QAAQ,EAAE,CAAC,eAAe,aAGnB;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACF,CACjB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}
1	+ {"version":3,"file":"NcbiBlastPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAGL,iBAAiB,GAClB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC9E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,kBAAkB,EAAE,MAAM,4BAA4B,CAAA;AAC/D,OAAO,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAA;AAC3D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAA;AACzD,OAAO,UAAU,MAAM,qBAAqB,CAAA;AAC5C,OAAO,EACL,kBAAkB,EAClB,KAAK,EACL,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,YAAY,CAAA;AAInB,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,YAAY,EAAE;QACZ,UAAU,EAAE,aAAa;KAC1B;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACvD,WAAW,EACX,OAAO,EACP,KAAK,GAKN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,UAAU,CAAC,CAAA;IAE5D,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAC9C,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,kBAAkB,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,aAAa,CAAE,CAAA;IAC7E,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,kBAAkB,CAAC;QAC7C,IAAI;QACJ,OAAO,EAAE,kBAAkB;KAC5B,CAAC,CAAA;IACF,MAAM,eAAe,GACnB,QAAQ,IAAI,CAAC,CAAC,OAAO,IAAI,QAAQ,CAAC;QAChC,CAAC,CAAC,kBAAkB,CAAC;YACjB,GAAG,EAAE,QAAQ,CAAC,GAAG;YACjB,kBAAkB;SACnB,CAAC;QACJ,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,oBAAoB,GAAG,CAAC,IAAI,EAAE,gBAAgB,CAAC,CAAA;IACrD,MAAM,aAAa,GAAG,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAA;IAC/D,OAAO,CACL,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;QAC5C,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAC9C,oBAAC,UAAU,IACT,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACtC,CAAC,EACD,KAAK,EAAC,qBAAqB,EAC3B,MAAM,UAEL,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAC/B,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;QAEb,oBAAC,UAAU,IACT,KAAK,EAAE,YAAY,EACnB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,eAAe,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACrC,CAAC,EACD,KAAK,EAAC,eAAe,EACrB,MAAM,UAEL,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CACxB,oBAAC,QAAQ,IAAC,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,IAC3B,GAAG,CACK,CACZ,CAAC,CACS;QAEb,oBAAC,UAAU,IACT,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACtC,CAAC,EACD,KAAK,EAAC,yBAAyB,EAC/B,MAAM,UAEL,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAClB,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE;YACvC,kBAAkB,CAAC,OAAO,CAAC;;YAAK,wBAAwB,CAAC,GAAG,CAAC,CACrD,CACZ,CAAC,CACS;QACb,oBAAC,UAAU,IACT,OAAO,EAAC,UAAU,EAClB,SAAS,QACT,OAAO,EAAE,CAAC,EACV,OAAO,EAAE,EAAE,EACX,SAAS,QACT,KAAK,EACH,eAAe;gBACb,CAAC,CAAC,IAAI,wBAAwB,CAAC,kBAAkB,CAAC,KAAK,eAAe,EAAE;gBACxE,CAAC,CAAC,YAAY,EAElB,SAAS,EAAE;gBACT,KAAK,EAAE;oBACL,QAAQ,EAAE,IAAI;oBACd,OAAO,EAAE;wBACP,KAAK,EAAE,OAAO,CAAC,YAAY;qBAC5B;iBACF;aACF,GACD;QAEF,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,MAAM,OAAO,GAAG,mBAAmB,CAAC;wBAClC,OAAO,EAAE,kBAAkB;wBAC3B,IAAI;wBACJ,YAAY,EAAE,gBAAgB,kBAAkB,CAAC,OAAO,CAAC,MAAM,wBAAwB,CAAC,kBAAkB,CAAC,MAAM,YAAY,EAAE;qBAChI,CAAC,CAAA;oBACF,OAAO,CAAC,cAAc,CAAC;wBACrB,YAAY,EAAE,QAAQ;wBACtB,aAAa;wBACb,YAAY;wBACZ,kBAAkB;wBAClB,eAAe;qBAChB,CAAC,CAAA;oBACF,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,QAAQ,EAAE,CAAC,eAAe,aAGnB;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACF,CACjB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.d.ts CHANGED Viewed

@@ -1,23 +1,15 @@
-import { Feature } from '@jbrowse/core/util';
-export interface Feat {
-    start: number;
-    end: number;
-    type: string;
-}
+import type { Feat } from './types';
+import type { Feature } from '@jbrowse/core/util';
 export declare function stitch(subfeats: Feat[], sequence: string): string;
 export declare function calculateProteinSequence({ cds, sequence, codonTable, }: {
     cds: Feat[];
     sequence: string;
     codonTable: Record<string, string>;
 }): string;
-export declare function revlist(list: {
-    start: number;
-    end: number;
-    type: string;
-}[], seqlen: number): {
+export declare function revlist(list: Feat[], seqlen: number): {
     start: number;
     end: number;
-    type: string;
+    type?: string;
 }[];
 export declare function dedupe(list: Feat[]): Feat[];
 export declare function getProteinSequence({ selectedTranscript, seq, }: {

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js CHANGED Viewed

@@ -29,16 +29,15 @@ export function dedupe(list) {
     return list.filter((item, pos, ary) => !pos || getItemId(item) !== getItemId(ary[pos - 1]));
 }
 export function getProteinSequence({ selectedTranscript, seq, }) {
-    // @ts-expect-error
     const f = selectedTranscript.toJSON();
     const cds = dedupe(f.subfeatures
-        .sort((a, b) => a.start - b.start)
+        ?.sort((a, b) => a.start - b.start)
         .map(sub => ({
         ...sub,
         start: sub.start - f.start,
         end: sub.end - f.start,
     }))
-        .filter(f => f.type === 'CDS'));
+        .filter(f => f.type === 'CDS') || []);
     return calculateProteinSequence({
         cds: f.strand === -1 ? revlist(cds, seq.length) : cds,
         sequence: f.strand === -1 ? revcom(seq) : seq,

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"calculateProteinSequence.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.ts"],"names":[],"mappings":"AAAA,OAAO,~~EAEL~~,iBAAiB,EACjB,kBAAkB,EAClB,MAAM,GACP,MAAM,oBAAoB,CAAA;~~AAQ3B~~,MAAM,UAAU,MAAM,CAAC,QAAgB,EAAE,QAAgB;IACvD,OAAO,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;AACzE,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,EACvC,GAAG,EACH,QAAQ,EACR,UAAU,GAKX;IACC,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;IACjC,IAAI,OAAO,GAAG,EAAE,CAAA;IAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QACvC,qDAAqD;QACrD,OAAO,IAAI,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAA;IACnD,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC;AAED,MAAM,UAAU,OAAO,~~CACrB~~,~~IAAoD~~,~~EACpD~~,MAAc;~~IAEd~~,OAAO,IAAI;SACR,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACX,GAAG,GAAG;QACN,KAAK,EAAE,MAAM,GAAG,GAAG,CAAC,GAAG;QACvB,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC,KAAK;KACxB,CAAC,CAAC;SACF,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAA;AACtC,CAAC;AAED,sDAAsD;AACtD,SAAS,SAAS,CAAC,IAAU;IAC3B,OAAO,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;AACpC,CAAC;AAED,sDAAsD;AACtD,MAAM,UAAU,MAAM,CAAC,IAAY;IACjC,OAAO,IAAI,CAAC,MAAM,CAChB,CAAC,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAE,CAAC,CACzE,CAAA;AACH,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,EACjC,kBAAkB,EAClB,GAAG,GAIJ;IACC,~~mBAAmB;IACnB,~~MAAM,CAAC,GAAG,kBAAkB,CAAC,MAAM,~~EAMlC~~,CAAA;~~IACD~~,MAAM,GAAG,GAAG,MAAM,CAChB,CAAC,CAAC,WAAW;~~SACV~~,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC;~~SACjC~~,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACX,GAAG,GAAG;QACN,KAAK,EAAE,GAAG,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK;QAC1B,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK;KACvB,CAAC,CAAC;SACF,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,~~CACjC~~,CAAA;IAED,OAAO,wBAAwB,CAAC;QAC9B,GAAG,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG;QACrD,QAAQ,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG;QAC7C,UAAU,EAAE,kBAAkB,CAAC,iBAAiB,CAAC;KAClD,CAAC,CAAA;AACJ,CAAC"}
1	+ {"version":3,"file":"calculateProteinSequence.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,iBAAiB,EACjB,kBAAkB,EAClB,MAAM,GACP,MAAM,oBAAoB,CAAA;AAK3B,MAAM,UAAU,MAAM,CAAC,QAAgB,EAAE,QAAgB;IACvD,OAAO,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;AACzE,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,EACvC,GAAG,EACH,QAAQ,EACR,UAAU,GAKX;IACC,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAA;IACjC,IAAI,OAAO,GAAG,EAAE,CAAA;IAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;QACvC,qDAAqD;QACrD,OAAO,IAAI,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,CAAA;IACnD,CAAC;IACD,OAAO,OAAO,CAAA;AAChB,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAY,EAAE,MAAc;IAClD,OAAO,IAAI;SACR,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACX,GAAG,GAAG;QACN,KAAK,EAAE,MAAM,GAAG,GAAG,CAAC,GAAG;QACvB,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC,KAAK;KACxB,CAAC,CAAC;SACF,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAA;AACtC,CAAC;AAED,sDAAsD;AACtD,SAAS,SAAS,CAAC,IAAU;IAC3B,OAAO,GAAG,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,GAAG,EAAE,CAAA;AACpC,CAAC;AAED,sDAAsD;AACtD,MAAM,UAAU,MAAM,CAAC,IAAY;IACjC,OAAO,IAAI,CAAC,MAAM,CAChB,CAAC,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAE,CAAC,CACzE,CAAA;AACH,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,EACjC,kBAAkB,EAClB,GAAG,GAIJ;IACC,MAAM,CAAC,GAAG,kBAAkB,CAAC,MAAM,EAAE,CAAA;IACrC,MAAM,GAAG,GAAG,MAAM,CAChB,CAAC,CAAC,WAAW;QACX,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC;SAClC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QACX,GAAG,GAAG;QACN,KAAK,EAAE,GAAG,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK;QAC1B,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK;KACvB,CAAC,CAAC;SACF,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,IAAI,EAAE,CACvC,CAAA;IAED,OAAO,wBAAwB,CAAC;QAC9B,GAAG,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG;QACrD,QAAQ,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG;QAC7C,UAAU,EAAE,kBAAkB,CAAC,iBAAiB,CAAC;KAClD,CAAC,CAAA;AACJ,CAAC"}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.d.ts ADDED Viewed

@@ -0,0 +1,8 @@
+import type { AbstractSessionModel } from '@jbrowse/core/util';
+export declare function fetchSeq({ start, end, refName, session, assemblyName, }: {
+    start: number;
+    end: number;
+    refName: string;
+    assemblyName: string;
+    session: AbstractSessionModel;
+}): Promise<string>;

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.js ADDED Viewed

@@ -0,0 +1,23 @@
+import { getConf } from '@jbrowse/core/configuration';
+export async function fetchSeq({ start, end, refName, session, assemblyName, }) {
+    const { assemblyManager, rpcManager } = session;
+    const assembly = await assemblyManager.waitForAssembly(assemblyName);
+    if (!assembly) {
+        throw new Error('assembly not found');
+    }
+    const sessionId = 'getSequence';
+    const feats = (await rpcManager.call(sessionId, 'CoreGetFeatures', {
+        adapterConfig: getConf(assembly, ['sequence', 'adapter']),
+        sessionId,
+        regions: [
+            {
+                start,
+                end,
+                refName: assembly.getCanonicalRefName(refName),
+                assemblyName,
+            },
+        ],
+    }));
+    return feats[0]?.get('seq') ?? '';
+}
+//# sourceMappingURL=fetchSeq.js.map

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"fetchSeq.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/fetchSeq.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AAIrD,MAAM,CAAC,KAAK,UAAU,QAAQ,CAAC,EAC7B,KAAK,EACL,GAAG,EACH,OAAO,EACP,OAAO,EACP,YAAY,GAOb;IACC,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;IAC/C,MAAM,QAAQ,GAAG,MAAM,eAAe,CAAC,eAAe,CAAC,YAAY,CAAC,CAAA;IACpE,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAA;IACvC,CAAC;IACD,MAAM,SAAS,GAAG,aAAa,CAAA;IAC/B,MAAM,KAAK,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CAAC,SAAS,EAAE,iBAAiB,EAAE;QACjE,aAAa,EAAE,OAAO,CAAC,QAAQ,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACzD,SAAS;QACT,OAAO,EAAE;YACP;gBACE,KAAK;gBACL,GAAG;gBACH,OAAO,EAAE,QAAQ,CAAC,mBAAmB,CAAC,OAAO,CAAC;gBAC9C,YAAY;aACb;SACF;KACF,CAAC,CAAc,CAAA;IAChB,OAAQ,KAAK,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,KAAK,CAAwB,IAAI,EAAE,CAAA;AAC3D,CAAC"}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 import { Feature } from '@jbrowse/core/util';
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-import { JBrowsePluginMsaViewModel } from '../../../MsaViewPanel/model';
+import type { JBrowsePluginMsaViewModel } from '../../../MsaViewPanel/model';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 export declare function ncbiBlastLaunchView({ newViewTitle, view, feature, }: {
     newViewTitle: string;
     view: LinearGenomeViewModel;

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ncbiBlastLaunchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.ts"],"names":[],"mappings":"AAAA,OAAO,EAAW,UAAU,EAAE,MAAM,oBAAoB,CAAA;~~AAMxD~~,MAAM,UAAU,mBAAmB,CAAC,EAClC,YAAY,EACZ,IAAI,EACJ,OAAO,GAKR;IACC,OAAO,UAAU,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,SAAS,EAAE;QACzC,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,YAAY;QACzB,eAAe,EAAE,IAAI,CAAC,EAAE;QACxB,gBAAgB,EAAE,OAAO,CAAC,MAAM,EAAE;QAClC,aAAa,EAAE,GAAG;QAClB,SAAS,EAAE,GAAG;QACd,eAAe,EAAE,IAAI;QACrB,gBAAgB,EAAE,IAAI;QACtB,QAAQ,EAAE,EAAE;QACZ,SAAS,EAAE,EAAE;QACb,eAAe,EAAE,0BAA0B;KAC5C,CAA8B,CAAA;AACjC,CAAC"}
1	+ {"version":3,"file":"ncbiBlastLaunchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.ts"],"names":[],"mappings":"AAAA,OAAO,EAAW,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAKxD,MAAM,UAAU,mBAAmB,CAAC,EAClC,YAAY,EACZ,IAAI,EACJ,OAAO,GAKR;IACC,OAAO,UAAU,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,SAAS,EAAE;QACzC,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,YAAY;QACzB,eAAe,EAAE,IAAI,CAAC,EAAE;QACxB,gBAAgB,EAAE,OAAO,CAAC,MAAM,EAAE;QAClC,aAAa,EAAE,GAAG;QAClB,SAAS,EAAE,GAAG;QACd,eAAe,EAAE,IAAI;QACrB,gBAAgB,EAAE,IAAI;QACtB,QAAQ,EAAE,EAAE;QACZ,SAAS,EAAE,EAAE;QACb,eAAe,EAAE,0BAA0B;KAC5C,CAA8B,CAAA;AACjC,CAAC"}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.d.ts ADDED Viewed

@@ -0,0 +1,10 @@
+export interface Feat {
+    start: number;
+    end: number;
+    type?: string;
+}
+export interface SeqState {
+    seq: string;
+    upstream?: string;
+    downstream?: string;
+}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.js ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ export {};
2	+ //# sourceMappingURL=types.js.map

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/types.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"types.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/types.ts"],"names":[],"mappings":""}

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.d.ts CHANGED Viewed

@@ -1,9 +1,5 @@
-import { Feature } from '@jbrowse/core/util';
-export interface SeqState {
-    seq: string;
-    upstream?: string;
-    downstream?: string;
-}
+import type { Feature } from '@jbrowse/core/util';
+import type { SeqState } from './types';
 export interface ErrorState {
     error: string;
 }

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js CHANGED Viewed

@@ -1,28 +1,7 @@
 import { useEffect, useState } from 'react';
-import { getConf } from '@jbrowse/core/configuration';
 import { getSession } from '@jbrowse/core/util';
+import { fetchSeq } from './fetchSeq';
 const BPLIMIT = 500_000;
-async function fetchSeq({ start, end, refName, session, assemblyName, }) {
-    const { assemblyManager, rpcManager } = session;
-    const assembly = await assemblyManager.waitForAssembly(assemblyName);
-    if (!assembly) {
-        throw new Error('assembly not found');
-    }
-    const sessionId = 'getSequence';
-    const feats = (await rpcManager.call(sessionId, 'CoreGetFeatures', {
-        adapterConfig: getConf(assembly, ['sequence', 'adapter']),
-        sessionId,
-        regions: [
-            {
-                start,
-                end,
-                refName: assembly.getCanonicalRefName(refName),
-                assemblyName,
-            },
-        ],
-    }));
-    return feats[0]?.get('seq') ?? '';
-}
 export function useFeatureSequence({ view, feature, upDownBp = 0, forceLoad = true, }) {
     const [sequence, setSequence] = useState();
     const [error, setError] = useState();

package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"useFeatureSequence.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3C,OAAO,EAAE,~~OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAiC,~~UAAU,EAAE,MAAM,oBAAoB,CAAA;~~AAW9E~~,~~MAAM,~~OAAO,~~GAAG~~,~~OAAO,CAAA;AAEvB,KAAK,UAAU,~~QAAQ,~~CAAC,EACtB,KAAK,EACL,GAAG,EACH,OAAO,EACP,OAAO,EACP,YAAY,GAOb;IACC,MAAM,~~EAAE,~~eAAe,EAAE,UAAU,EAAE,GAAG,OAAO,CAAA;IAC/C,~~MAAM,~~QAAQ,GAAG,MAAM,eAAe,CAAC,eAAe,CAAC,~~YAAY,~~CAAC,~~CAAA;~~IACpE~~,~~IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,~~MAAM,~~IAAI,KAAK,CAAC,oBAAoB,CAAC,CAAA;IACvC,CAAC;IACD,MAAM,SAAS,GAAG,aAAa,CAAA;IAC/B,MAAM,KAAK,GAAG,CAAC,MAAM,UAAU,CAAC,IAAI,CAAC,SAAS,EAAE,iBAAiB,EAAE;QACjE,aAAa,EAAE,~~OAAO,~~CAAC,QAAQ,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACzD,SAAS;QACT,OAAO,EAAE;YACP;gBACE,KAAK;gBACL,~~GAAG~~;gBACH~~,OAAO,~~EAAE,QAAQ,CAAC,mBAAmB,CAAC,OAAO,CAAC;gBAC9C,YAAY;aACb;SACF;KACF,CAAC,CAAc,~~CAAA;~~IAChB~~,~~OAAQ,KAAK,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,KAAK,CAAwB,IAAI,EAAE,CAAA;AAC3D,CAAC;AAED,~~MAAM,UAAU,kBAAkB,CAAC,EACjC,IAAI,EACJ,OAAO,EACP,QAAQ,GAAG,CAAC,EACZ,SAAS,GAAG,IAAI,GAMjB;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAyB,CAAA;IACjE,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,YAAY,GAAG,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC,CAAC,CAAA;IAC7C,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,IAAI,EAAE,CAAC;YACT,mEAAmE;YACnE,CAAC;YAAA,CAAC,KAAK,IAAI,EAAE;gBACX,IAAI,CAAC;oBACH,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,WAAW,CAAC,SAAS,CAAC,CAAA;oBACtB,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;oBAChC,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,MAAM,EAI7C,CAAA;oBACD,IAAI,CAAC,YAAY,EAAE,CAAC;wBAClB,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAA;oBACtC,CAAC;oBACD,IAAI,CAAC,SAAS,IAAI,GAAG,GAAG,KAAK,GAAG,OAAO,EAAE,CAAC;wBACxC,WAAW,CAAC;4BACV,KAAK,EAAE,gCAAgC,OAAO,wCAAwC;yBACvF,CAAC,CAAA;oBACJ,CAAC;yBAAM,CAAC;wBACN,MAAM,CAAC,GAAG,KAAK,GAAG,QAAQ,CAAA;wBAC1B,MAAM,CAAC,GAAG,GAAG,GAAG,QAAQ,CAAA;wBACxB,WAAW,CAAC;4BACV,GAAG,EAAE,MAAM,QAAQ,CAAC;gCAClB,KAAK;gCACL,GAAG;gCACH,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;4BACF,QAAQ,EAAE,MAAM,QAAQ,CAAC;gCACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gCACrB,GAAG,EAAE,KAAK;gCACV,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;4BACF,UAAU,EAAE,MAAM,QAAQ,CAAC;gCACzB,KAAK,EAAE,GAAG;gCACV,GAAG,EAAE,CAAC;gCACN,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;yBACH,CAAC,CAAA;oBACJ,CAAC;gBACH,CAAC;gBAAC,OAAO,CAAC,EAAE,CAAC;oBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACb,CAAC;YACH,CAAC,CAAC,EAAE,CAAA;QACN,CAAC;IACH,CAAC,EAAE,CAAC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,YAAY,EAAE,SAAS,CAAC,CAAC,CAAA;IACtD,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAA;AAC5B,CAAC"}
1	+ {"version":3,"file":"useFeatureSequence.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE3C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAQrC,MAAM,OAAO,GAAG,OAAO,CAAA;AAEvB,MAAM,UAAU,kBAAkB,CAAC,EACjC,IAAI,EACJ,OAAO,EACP,QAAQ,GAAG,CAAC,EACZ,SAAS,GAAG,IAAI,GAMjB;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAyB,CAAA;IACjE,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,YAAY,GAAG,IAAI,EAAE,aAAa,EAAE,CAAC,CAAC,CAAC,CAAA;IAC7C,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,IAAI,EAAE,CAAC;YACT,mEAAmE;YACnE,CAAC;YAAA,CAAC,KAAK,IAAI,EAAE;gBACX,IAAI,CAAC;oBACH,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACnB,WAAW,CAAC,SAAS,CAAC,CAAA;oBACtB,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;oBAChC,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,OAAO,CAAC,MAAM,EAI7C,CAAA;oBACD,IAAI,CAAC,YAAY,EAAE,CAAC;wBAClB,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAA;oBACtC,CAAC;oBACD,IAAI,CAAC,SAAS,IAAI,GAAG,GAAG,KAAK,GAAG,OAAO,EAAE,CAAC;wBACxC,WAAW,CAAC;4BACV,KAAK,EAAE,gCAAgC,OAAO,wCAAwC;yBACvF,CAAC,CAAA;oBACJ,CAAC;yBAAM,CAAC;wBACN,MAAM,CAAC,GAAG,KAAK,GAAG,QAAQ,CAAA;wBAC1B,MAAM,CAAC,GAAG,GAAG,GAAG,QAAQ,CAAA;wBACxB,WAAW,CAAC;4BACV,GAAG,EAAE,MAAM,QAAQ,CAAC;gCAClB,KAAK;gCACL,GAAG;gCACH,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;4BACF,QAAQ,EAAE,MAAM,QAAQ,CAAC;gCACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gCACrB,GAAG,EAAE,KAAK;gCACV,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;4BACF,UAAU,EAAE,MAAM,QAAQ,CAAC;gCACzB,KAAK,EAAE,GAAG;gCACV,GAAG,EAAE,CAAC;gCACN,OAAO;gCACP,YAAY;gCACZ,OAAO;6BACR,CAAC;yBACH,CAAC,CAAA;oBACJ,CAAC;gBACH,CAAC;gBAAC,OAAO,CAAC,EAAE,CAAC;oBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACb,CAAC;YACH,CAAC,CAAC,EAAE,CAAA;QACN,CAAC;IACH,CAAC,EAAE,CAAC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,YAAY,EAAE,SAAS,CAAC,CAAC,CAAA;IACtD,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAA;AAC5B,CAAC"}

package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js CHANGED Viewed

@@ -4,7 +4,6 @@ import { getContainingView, getSession, } from '@jbrowse/core/util';
 import { Button, DialogActions, DialogContent, MenuItem, TextField, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
-// locals
 import { fetchGeneList } from './fetchGeneList';
 import { preCalculatedLaunchView } from './preCalculatedLaunchView';
 import { getGeneDisplayName, getId, getTranscriptDisplayName, getTranscriptFeatures, } from '../../util';
@@ -50,18 +49,16 @@ const PreLoadedMSA = observer(function PreLoadedMSA2({ model, feature, handleClo
                 ' ',
                 React.createElement("a", { href: "https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz100way/alignments/" }, "knownCanonical.multiz100way.protAA.fa.gz")),
             error ? React.createElement(ErrorMessage, { error: error }) : null,
-            geneNameList && !ret ? (React.createElement("div", { style: { color: 'red' } }, "No MSA data for this gene found")) : null,
-            React.createElement(TextField, { value: userSelection, onChange: event => {
+            geneNameList && !ret ? (React.createElement(Typography, { color: "error" }, "No MSA data for this gene found")) : null,
+            React.createElement(TextField, { select: true, label: "Choose isoform to view MSA for", value: userSelection, onChange: event => {
                     setUserSelection(event.target.value);
-                }, label: "Choose isoform to view MSA for", select: true },
-                options
-                    .filter(val => set.has(getId(val)))
-                    .map(val => (React.createElement(MenuItem, { value: getId(val), key: val.id() },
+                } }, options.map(val => {
+                const inSet = set.has(getId(val));
+                return (React.createElement(MenuItem, { value: getId(val), key: val.id(), disabled: !inSet },
                     getTranscriptDisplayName(val),
-                    " (has data)"))),
-                options
-                    .filter(val => !set.has(getId(val)))
-                    .map(val => (React.createElement(MenuItem, { value: getId(val), key: val.id(), disabled: true }, getTranscriptDisplayName(val)))))),
+                    " ",
+                    inSet ? ' (has data)' : ''));
+            }))),
         React.createElement(DialogActions, null,
             React.createElement(Button, { color: "primary", variant: "contained", onClick: () => {
                     // eslint-disable-next-line @typescript-eslint/no-floating-promises

package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"PreLoadedMSADataPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAGL,iBAAiB,EACjB,UAAU,GACX,MAAM,oBAAoB,CAAA;~~AAE3B~~,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,~~SAAS;AACT,~~OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAA;AAC/C,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAA;AACnE,OAAO,EACL,kBAAkB,EAClB,KAAK,EACL,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,YAAY,CAAA;~~AAEnB~~,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAY,CAAA;IAC5D,SAAS,CAAC,GAAG,EAAE;QACb,mEAAmE;QACnE,CAAC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,MAAM,aAAa,EAAE,CAAA;gBAClC,eAAe,CAAC,IAAI,CAAC,CAAA;gBACrB,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAA;gBACzB,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;gBAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;gBACpD,IAAI,GAAG,EAAE,CAAC;oBACR,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;gBAC9B,CAAC;YACH,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;YACb,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;IACN,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IACb,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,YAAY,CAAC,CAAA;IACjC,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;IACpD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAErE,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,oBAAC,UAAU;;gBACsD,GAAG;gBAClE,2BAAG,IAAI,EAAC,0EAA0E,+CAE9E,CACO;YACZ,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC7C,YAAY,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CACtB,~~6BAAK~~,~~KAAK~~,~~EAAE~~,~~EAAE,~~KAAK,~~EAAE~~,~~KAAK~~,~~EAAE~~,~~sCAAuC~~,~~CACpE,~~CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,SAAS,IACR,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACtC,CAAC,~~EACD~~,~~KAAK~~,~~EAAC~~,~~gCAAgC~~,~~EACtC,MAAM;gBAEL,OAAO;qBACL,MAAM,~~CAAC,GAAG,CAAC,EAAE,~~CAAC~~,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,~~CAAC~~;~~qBAClC~~,~~GAAG~~,~~CAAC~~,~~GAAG,CAAC,EAAE,CAAC,CACV,~~oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE~~;oBACvC~~,~~wBAAwB~~,~~CAAC~~,~~GAAG~~,CAAC~~;kCACrB~~,~~CACZ,CAAC~~;~~gBACH~~,~~OAAO;qBACL~~,~~MAAM,~~CAAC,GAAG,CAAC,~~EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,~~KAAK,CAAC,~~GAAG,~~CAAC,CAAC,~~CAAC;qBACnC~~,~~GAAG,~~CAAC,~~GAAG,~~CAAC,~~EAAE,~~CAAC,~~CACV,oBAAC,QAAQ,IAAC,KAAK,~~EAAE,~~KAAK~~,~~CAAC~~,~~GAAG~~,CAAC,~~EAAE,GAAG,EAAE,GAAG,~~CAAC,~~EAAE~~,~~EAAE,EAAE,QAAQ,UACjD,wBAAwB,CAAC,GAAG,CAAC,CACrB,CACZ,CAAC,CACM,~~CACE;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,IAAI,CAAC;4BACH,IAAI,CAAC,GAAG,EAAE,CAAC;gCACT,OAAM;4BACR,CAAC;4BACD,MAAM,uBAAuB,CAAC;gCAC5B,aAAa;gCACb,OAAO;gCACP,YAAY,EAAE,kBAAkB,CAAC,GAAG,CAAC;gCACrC,IAAI;gCACJ,OAAO,EAAE,GAAG;6BACb,CAAC,CAAA;4BACF,WAAW,EAAE,CAAA;wBACf,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;gBACN,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
1	+ {"version":3,"file":"PreLoadedMSADataPanel.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAGL,iBAAiB,EACjB,UAAU,GACX,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAA;AAC/C,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAA;AACnE,OAAO,EACL,kBAAkB,EAClB,KAAK,EACL,wBAAwB,EACxB,qBAAqB,GACtB,MAAM,YAAY,CAAA;AAInB,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAY,CAAA;IAC5D,SAAS,CAAC,GAAG,EAAE;QACb,mEAAmE;QACnE,CAAC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,MAAM,aAAa,EAAE,CAAA;gBAClC,eAAe,CAAC,IAAI,CAAC,CAAA;gBACrB,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,CAAA;gBACzB,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;gBAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;gBACpD,IAAI,GAAG,EAAE,CAAC;oBACR,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;gBAC9B,CAAC;YACH,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;YACb,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;IACN,CAAC,EAAE,CAAC,OAAO,CAAC,CAAC,CAAA;IACb,MAAM,GAAG,GAAG,IAAI,GAAG,CAAC,YAAY,CAAC,CAAA;IACjC,MAAM,OAAO,GAAG,qBAAqB,CAAC,OAAO,CAAC,CAAA;IAC9C,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;IACpD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAErE,OAAO,CACL;QACE,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,oBAAC,UAAU;;gBACsD,GAAG;gBAClE,2BAAG,IAAI,EAAC,0EAA0E,+CAE9E,CACO;YACZ,KAAK,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;YAC7C,YAAY,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CACtB,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,sCAA6C,CACvE,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,SAAS,IACR,MAAM,QACN,KAAK,EAAC,gCAAgC,EACtC,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACtC,CAAC,IAEA,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBACjB,MAAM,KAAK,GAAG,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;gBACjC,OAAO,CACL,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,EAAE,QAAQ,EAAE,CAAC,KAAK;oBACzD,wBAAwB,CAAC,GAAG,CAAC;;oBAAG,KAAK,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,CAClD,CACZ,CAAA;YACH,CAAC,CAAC,CACQ,CACE;QAEhB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,IAAI,CAAC;4BACH,IAAI,CAAC,GAAG,EAAE,CAAC;gCACT,OAAM;4BACR,CAAC;4BACD,MAAM,uBAAuB,CAAC;gCAC5B,aAAa;gCACb,OAAO;gCACP,YAAY,EAAE,kBAAkB,CAAC,GAAG,CAAC;gCACrC,IAAI;gCACJ,OAAO,EAAE,GAAG;6BACb,CAAC,CAAA;4BACF,WAAW,EAAE,CAAA;wBACf,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;wBACb,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;gBACN,CAAC,aAGM;YACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,aAGM,CACK,CACf,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}

package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 import { AbstractSessionModel, Feature } from '@jbrowse/core/util';
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
 export declare function preCalculatedLaunchView({ userSelection, session, newViewTitle, view, feature, }: {
     session: AbstractSessionModel;
     userSelection: string;

package/dist/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"preCalculatedLaunchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts"],"names":[],"mappings":"~~AAEA~~,OAAO,EAAE,MAAM,EAAE,MAAM,MAAM,CAAA;~~AAE7B~~,KAAK,UAAU,OAAO,CAAC,GAAW;IAChC,MAAM,GAAG,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,QAAQ,GAAG,CAAC,MAAM,aAAa,MAAM,GAAG,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;IACpE,CAAC;IACD,MAAM,IAAI,GAAG,MAAM,GAAG,CAAC,WAAW,EAAE,CAAA;IACpC,OAAO,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,uBAAuB,CAAC,EAC5C,aAAa,EACb,OAAO,EACP,YAAY,EACZ,IAAI,EACJ,OAAO,GAOR;IACC,MAAM,CAAC,GAAG,MAAM,OAAO,CACrB,oDAAoD,aAAa,SAAS,CAC3E,CAAA;IAED,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE;QACzB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,YAAY;QACzB,aAAa,EAAE,GAAG;QAClB,SAAS,EAAE,GAAG;QACd,eAAe,EAAE,KAAK;QACtB,gBAAgB,EAAE,IAAI;QACtB,aAAa,EAAE,KAAK;QACpB,QAAQ,EAAE,EAAE;QACZ,SAAS,EAAE,EAAE;QACb,eAAe,EAAE,0BAA0B;QAC3C,cAAc,EAAE;YACd,GAAG,EAAE,6EAA6E;SACnF;QACD,sBAAsB,EAAE;YACtB,GAAG,EAAE,6DAA6D;SACnE;QACD,IAAI,EAAE;YACJ,GAAG,EAAE,CAAC;SACP;QACD,eAAe,EAAE,IAAI,CAAC,EAAE;QACxB,gBAAgB,EAAE,OAAO,CAAC,MAAM,EAAE;KACnC,CAAC,CAAA;AACJ,CAAC"}
1	+ {"version":3,"file":"preCalculatedLaunchView.js","sourceRoot":"","sources":["../../../../src/LaunchMsaView/components/PreLoadedMSA/preCalculatedLaunchView.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,MAAM,MAAM,CAAA;AAI7B,KAAK,UAAU,OAAO,CAAC,GAAW;IAChC,MAAM,GAAG,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;IAC5B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,QAAQ,GAAG,CAAC,MAAM,aAAa,MAAM,GAAG,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;IACpE,CAAC;IACD,MAAM,IAAI,GAAG,MAAM,GAAG,CAAC,WAAW,EAAE,CAAA;IACpC,OAAO,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,uBAAuB,CAAC,EAC5C,aAAa,EACb,OAAO,EACP,YAAY,EACZ,IAAI,EACJ,OAAO,GAOR;IACC,MAAM,CAAC,GAAG,MAAM,OAAO,CACrB,oDAAoD,aAAa,SAAS,CAC3E,CAAA;IAED,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE;QACzB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,YAAY;QACzB,aAAa,EAAE,GAAG;QAClB,SAAS,EAAE,GAAG;QACd,eAAe,EAAE,KAAK;QACtB,gBAAgB,EAAE,IAAI;QACtB,aAAa,EAAE,KAAK;QACpB,QAAQ,EAAE,EAAE;QACZ,SAAS,EAAE,EAAE;QACb,eAAe,EAAE,0BAA0B;QAC3C,cAAc,EAAE;YACd,GAAG,EAAE,6EAA6E;SACnF;QACD,sBAAsB,EAAE;YACtB,GAAG,EAAE,6DAA6D;SACnE;QACD,IAAI,EAAE;YACJ,GAAG,EAAE,CAAC;SACP;QACD,eAAe,EAAE,IAAI,CAAC,EAAE;QACxB,gBAAgB,EAAE,OAAO,CAAC,MAAM,EAAE;KACnC,CAAC,CAAA;AACJ,CAAC"}

package/dist/LaunchMsaView/components/TabPanel.d.ts ADDED Viewed

@@ -0,0 +1,6 @@
+import React from 'react';
+export default function TabPanel({ children, value, index, ...other }: {
+    children?: React.ReactNode;
+    index: number;
+    value: number;
+}): React.JSX.Element;

package/dist/LaunchMsaView/components/TabPanel.js ADDED Viewed

@@ -0,0 +1,6 @@
+import React from 'react';
+// this is from MUI example
+export default function TabPanel({ children, value, index, ...other }) {
+    return (React.createElement("div", { role: "tabpanel", hidden: value !== index, ...other }, value === index && React.createElement("div", null, children)));
+}
+//# sourceMappingURL=TabPanel.js.map

package/dist/LaunchMsaView/components/TabPanel.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"TabPanel.js","sourceRoot":"","sources":["../../../src/LaunchMsaView/components/TabPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,2BAA2B;AAC3B,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,EACL,GAAG,KAAK,EAKT;IACC,OAAO,CACL,6BAAK,IAAI,EAAC,UAAU,EAAC,MAAM,EAAE,KAAK,KAAK,KAAK,KAAM,KAAK,IACpD,KAAK,KAAK,KAAK,IAAI,iCAAM,QAAQ,CAAO,CACrC,CACP,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/index.js CHANGED Viewed

@@ -1,7 +1,5 @@
 import { getContainingTrack, getSession } from '@jbrowse/core/util';
 import AddIcon from '@mui/icons-material/Add';
-// icons
-// locals
 import LaunchMsaViewDialog from './components/LaunchMsaViewDialog';
 function isDisplay(elt) {
     return elt.name === 'LinearBasicDisplay';

package/dist/LaunchMsaView/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LaunchMsaView/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAAW,kBAAkB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC5E,OAAO,OAAO,MAAM,yBAAyB,CAAA;~~AAG7C~~,~~QAAQ;AAER,SAAS;AACT,~~OAAO,mBAAmB,MAAM,kCAAkC,CAAA;~~AAGlE~~,SAAS,SAAS,CAAC,GAAqB;IACtC,OAAO,GAAG,CAAC,IAAI,KAAK,oBAAoB,CAAA;AAC1C,CAAC;AAED,SAAS,gBAAgB,CAAC,UAAyB;IACjD,OAAO,UAAU,CAAC,KAAK,CACrB,CAAC,IAGA,EAAE,EAAE;QACH,MAAM,qBAAqB,GAAG,IAAI,CAAC,gBAAgB,CAAA;QACnD,OAAO;YACL,gBAAgB;gBACd,MAAM,OAAO,GAAG,IAAI,CAAC,kBAAkB,CAAA;gBACvC,MAAM,KAAK,GAAG,kBAAkB,CAAC,IAAI,CAAC,CAAA;gBACtC,OAAO;oBACL,GAAG,qBAAqB,EAAE;oBAC1B,GAAG,CAAC,OAAO;wBACT,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,iBAAiB;gCACxB,IAAI,EAAE,OAAO;gCACb,OAAO,EAAE,GAAG,EAAE;oCACZ,UAAU,CAAC,KAAK,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;wCAC3C,mBAAmB;wCACnB;4CACE,KAAK,EAAE,KAAK;4CACZ,WAAW;4CACX,OAAO;yCACR;qCACF,CAAC,CAAA;gCACJ,CAAC;6BACF;yBACF;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CACF,CAAA;AACH,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,aAA4B;IACjE,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,GAAyB,EAAE,EAAE;QAC5B,IAAI,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;YACnB,GAAG,CAAC,UAAU,GAAG,gBAAgB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;QACnD,CAAC;QACD,OAAO,GAAG,CAAA;IACZ,CAAC,CACF,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/LaunchMsaView/index.ts"],"names":[],"mappings":"AAIA,OAAO,EAAW,kBAAkB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC5E,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAE7C,OAAO,mBAAmB,MAAM,kCAAkC,CAAA;AAIlE,SAAS,SAAS,CAAC,GAAqB;IACtC,OAAO,GAAG,CAAC,IAAI,KAAK,oBAAoB,CAAA;AAC1C,CAAC;AAED,SAAS,gBAAgB,CAAC,UAAyB;IACjD,OAAO,UAAU,CAAC,KAAK,CACrB,CAAC,IAGA,EAAE,EAAE;QACH,MAAM,qBAAqB,GAAG,IAAI,CAAC,gBAAgB,CAAA;QACnD,OAAO;YACL,gBAAgB;gBACd,MAAM,OAAO,GAAG,IAAI,CAAC,kBAAkB,CAAA;gBACvC,MAAM,KAAK,GAAG,kBAAkB,CAAC,IAAI,CAAC,CAAA;gBACtC,OAAO;oBACL,GAAG,qBAAqB,EAAE;oBAC1B,GAAG,CAAC,OAAO;wBACT,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,iBAAiB;gCACxB,IAAI,EAAE,OAAO;gCACb,OAAO,EAAE,GAAG,EAAE;oCACZ,UAAU,CAAC,KAAK,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;wCAC3C,mBAAmB;wCACnB;4CACE,KAAK,EAAE,KAAK;4CACZ,WAAW;4CACX,OAAO;yCACR;qCACF,CAAC,CAAA;gCACJ,CAAC;6BACF;yBACF;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CACF,CAAA;AACH,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,cAAc,CAAC,aAA4B;IACjE,aAAa,CAAC,mBAAmB,CAC/B,6BAA6B,EAC7B,CAAC,GAAyB,EAAE,EAAE;QAC5B,IAAI,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;YACnB,GAAG,CAAC,UAAU,GAAG,gBAAgB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAA;QACnD,CAAC;QACD,OAAO,GAAG,CAAA;IACZ,CAAC,CACF,CAAA;AACH,CAAC"}

package/dist/LaunchMsaView/util.js CHANGED Viewed

@@ -8,7 +8,7 @@ export function getTranscriptFeatures(feature) {
             subfeatures.filter(f => f.get('subfeatures')?.some(f => f.get('type') === 'CDS'));
 }
 export function getId(val) {
-    return val?.get('name') || val?.get('id') || '';
+    return val?.get('name') ?? val?.get('id') ?? '';
 }
 export function getTranscriptDisplayName(val) {
     return val === undefined
@@ -18,7 +18,7 @@ export function getTranscriptDisplayName(val) {
 export function getGeneDisplayName(val) {
     return val === undefined
         ? ''
-        : [val.get('gene_name') || val.get('name'), val.get('id')]
+        : [val.get('gene_name') ?? val.get('name'), val.get('id')]
             .filter(f => !!f)
             .join(' ');
 }

package/dist/MsaViewPanel/components/LoadingBLAST.js CHANGED Viewed

@@ -3,7 +3,6 @@ import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
 import { Typography } from '@mui/material';
 import { observer } from 'mobx-react';
 import { makeStyles } from 'tss-react/mui';
-// locals
 import RIDLink from './RIDLink';
 const useStyles = makeStyles()(theme => ({
     margin: {

package/dist/MsaViewPanel/components/LoadingBLAST.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"LoadingBLAST.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/LoadingBLAST.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;~~AAI1C~~,~~SAAS;AACT,~~OAAO,OAAO,MAAM,WAAW,CAAA;AAE/B,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,MAAM,EAAE;QACN,OAAO,EAAE,EAAE;KACZ;IACD,OAAO,EAAE;QACP,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,QAAQ,CAAC,EAAE,GAAG,EAAE,KAAK,EAAoC;IAChE,OAAO,CACL;QACG,GAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,GAAG,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QACnC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EAAE,GAAG,EAAE,QAAQ,EAAqC;IACvE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC5B,GAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,GAAG,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QACnC,oBAAC,UAAU,QAAE,QAAQ,CAAc,CAC/B,CACP,CAAA;AACH,CAAC;AAED,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,GAAG,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;QAC5B,oBAAC,eAAe,IAAC,OAAO,EAAC,oBAAoB,EAAC,OAAO,EAAC,IAAI,GAAG;QAC5D,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,KAAK,GAAI,CACrC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACT,oBAAC,WAAW,IAAC,GAAG,EAAE,GAAG,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC9C,CAAC,CAAC,CAAC,IAAI,CAAC;QACT,oBAAC,UAAU,QAAE,UAAU,IAAI,0BAA0B,CAAc,CAC/D,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
1	+ {"version":3,"file":"LoadingBLAST.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/LoadingBLAST.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAChE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAG1C,OAAO,OAAO,MAAM,WAAW,CAAA;AAE/B,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,MAAM,EAAE;QACN,OAAO,EAAE,EAAE;KACZ;IACD,OAAO,EAAE;QACP,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,QAAQ,CAAC,EAAE,GAAG,EAAE,KAAK,EAAoC;IAChE,OAAO,CACL;QACG,GAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,GAAG,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QACnC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACP,CAAA;AACH,CAAC;AAED,SAAS,WAAW,CAAC,EAAE,GAAG,EAAE,QAAQ,EAAqC;IACvE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC5B,GAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,GAAG,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QACnC,oBAAC,UAAU,QAAE,QAAQ,CAAc,CAC/B,CACP,CAAA;AACH,CAAC;AAED,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,GAAG,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,MAAM;QAC5B,oBAAC,eAAe,IAAC,OAAO,EAAC,oBAAoB,EAAC,OAAO,EAAC,IAAI,GAAG;QAC5D,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,KAAK,GAAI,CACrC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACT,oBAAC,WAAW,IAAC,GAAG,EAAE,GAAG,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC9C,CAAC,CAAC,CAAC,IAAI,CAAC;QACT,oBAAC,UAAU,QAAE,UAAU,IAAI,0BAA0B,CAAc,CAC/D,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}

package/dist/MsaViewPanel/components/MsaViewPanel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"MsaViewPanel.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/MsaViewPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;~~AAIvC~~,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CACL,iCACG,WAAW,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI,CACrE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
1	+ {"version":3,"file":"MsaViewPanel.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/MsaViewPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAGvC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CACL,iCACG,WAAW,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI,CACrE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}

package/dist/MsaViewPanel/components/RIDLink.js CHANGED Viewed

@@ -1,6 +1,5 @@
 import React from 'react';
 import { Link, Typography } from '@mui/material';
-// locals
 import OpenInNewIcon from '../../OpenInNewIcon';
 import { BLAST_URL } from '../../utils/ncbiBlast';
 function RIDLink({ rid }) {

package/dist/MsaViewPanel/components/RIDLink.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"RIDLink.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/RIDLink.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAEhD,~~SAAS;AACT,~~OAAO,aAAa,MAAM,qBAAqB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAA;AAEjD,SAAS,OAAO,CAAC,EAAE,GAAG,EAAmB;IACvC,OAAO,CACL,oBAAC,UAAU;;QACJ,GAAG;QAAE,GAAG;QACb,oBAAC,IAAI,IAAC,MAAM,EAAC,QAAQ,EAAC,IAAI,EAAE,GAAG,SAAS,gBAAgB,GAAG,EAAE;;YACvC,oBAAC,aAAa,OAAG;gBAChC,CACI,CACd,CAAA;AACH,CAAC;AAED,eAAe,OAAO,CAAA"}
1	+ {"version":3,"file":"RIDLink.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/RIDLink.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAEhD,OAAO,aAAa,MAAM,qBAAqB,CAAA;AAC/C,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAA;AAEjD,SAAS,OAAO,CAAC,EAAE,GAAG,EAAmB;IACvC,OAAO,CACL,oBAAC,UAAU;;QACJ,GAAG;QAAE,GAAG;QACb,oBAAC,IAAI,IAAC,MAAM,EAAC,QAAQ,EAAC,IAAI,EAAE,GAAG,SAAS,gBAAgB,GAAG,EAAE;;YACvC,oBAAC,aAAa,OAAG;gBAChC,CACI,CACd,CAAA;AACH,CAAC;AAED,eAAe,OAAO,CAAA"}

package/dist/MsaViewPanel/index.js CHANGED Viewed

@@ -1,6 +1,5 @@
 import { lazy } from 'react';
 import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType';
-// locals
 import stateModelFactory from './model';
 // lazies
 const MsaViewPanel = lazy(() => import('./components/MsaViewPanel'));

package/dist/MsaViewPanel/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MsaViewPanel/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAG5B,OAAO,QAAQ,MAAM,8CAA8C,CAAA;AAEnE,~~SAAS;AACT,~~OAAO,iBAAiB,MAAM,SAAS,CAAA;AAEvC,SAAS;AACT,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEpE,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,WAAW,CAAC,GAAG,EAAE;QAC7B,OAAO,IAAI,QAAQ,CAAC;YAClB,IAAI,EAAE,SAAS;YACf,UAAU,EAAE,iBAAiB,EAAE;YAC/B,cAAc,EAAE,YAAY;SAC7B,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC"}
1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MsaViewPanel/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAG5B,OAAO,QAAQ,MAAM,8CAA8C,CAAA;AAEnE,OAAO,iBAAiB,MAAM,SAAS,CAAA;AAEvC,SAAS;AACT,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEpE,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,WAAW,CAAC,GAAG,EAAE;QAC7B,OAAO,IAAI,QAAQ,CAAC;YAClB,IAAI,EAAE,SAAS;YACf,UAAU,EAAE,iBAAiB,EAAE;YAC/B,cAAc,EAAE,YAAY;SAC7B,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC"}

package/dist/MsaViewPanel/model.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
-import { Feature } from '@jbrowse/core/util';
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
-import { Instance } from 'mobx-state-tree';
+import type { Feature } from '@jbrowse/core/util';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type { Instance } from 'mobx-state-tree';
 type LGV = LinearGenomeViewModel;
 type MaybeLGV = LGV | undefined;
 export interface IRegion {
@@ -269,6 +269,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
         url?: string;
     } | undefined;
     highResScaleFactor: number;
+    showZoomStar: boolean;
     loadingMSA: boolean;
     loadingTree: boolean;
     volatileWidth: number | undefined;
@@ -293,6 +294,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     setAllowedGappyness(arg: number): void;
     setContrastLettering(arg: boolean): void;
     setLoadingMSA(arg: boolean): void;
+    setShowZoomStar(arg: boolean): void;
     setLoadingTree(arg: boolean): void;
     setWidth(arg: number): void;
     setHeight(height: number): void;
@@ -334,10 +336,10 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly treeMetadata: any;
     readonly MSA: import("react-msaview/dist/parsers/StockholmMSA").default | import("react-msaview/dist/parsers/FastaMSA").default | import("react-msaview/dist/parsers/EmfMSA").default | import("react-msaview/dist/parsers/ClustalMSA").default | null;
     readonly numColumns: number;
-    readonly tree: import("react-msaview/dist/util").NodeWithIds;
+    readonly tree: import("react-msaview/dist/types").NodeWithIds;
     readonly rowNames: string[];
     readonly mouseOverRowName: string | undefined;
-    readonly root: HierarchyNode<import("react-msaview/dist/util").NodeWithIds>;
+    readonly root: HierarchyNode<import("react-msaview/dist/types").NodeWithIds>;
     readonly msaAreaWidth: number;
     readonly treeAreaWidthMinusMargin: number;
     readonly blanks: number[];
@@ -354,9 +356,10 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly colStatsSums: {
         [k: string]: number;
     };
-    readonly hierarchy: HierarchyNode<import("react-msaview/dist/util").NodeWithIdsAndLength>;
+    readonly hierarchy: HierarchyNode<import("react-msaview/dist/types").NodeWithIdsAndLength>;
     readonly totalHeight: number;
-    readonly leaves: HierarchyNode<import("react-msaview/dist/util").NodeWithIdsAndLength>[];
+    readonly leaves: HierarchyNode<import("react-msaview/dist/types").NodeWithIdsAndLength>[];
+    readonly allBranchesLength0: boolean;
 } & {
     readonly totalWidth: number;
 } & {
@@ -371,6 +374,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly showTreeText: boolean;
 } & {
     setDrawMsaLetters(arg: boolean): void;
+    resetZoom(): void;
     zoomOutHorizontal(): void;
     zoomInHorizontal(): void;
     zoomInVertical(): void;
@@ -391,9 +395,9 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly secondaryStructureConsensus: string | undefined;
     readonly seqConsensus: string | undefined;
     readonly conservation: string[];
-    readonly adapterTrackModels: import("react-msaview/dist/model").BasicTrack[];
-    readonly tracks: import("react-msaview/dist/model").BasicTrack[];
-    readonly turnedOnTracks: import("react-msaview/dist/model").ITextTrack[];
+    readonly adapterTrackModels: import("react-msaview/dist/types").BasicTrack[];
+    readonly tracks: import("react-msaview/dist/types").BasicTrack[];
+    readonly turnedOnTracks: import("react-msaview/dist/types").ITextTrack[];
     readonly showHorizontalScrollbar: boolean;
     readonly rowNamesSet: Map<string, number>;
     mouseOverCoordToRowLetter(rowName: string, position: number): string | undefined;
@@ -402,7 +406,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
 } & {
     readonly msaAreaHeight: number;
     readonly totalTrackAreaHeight: number;
-    readonly tidyInterProAnnotationTypes: Map<string, import("react-msaview/dist/model").Accession>;
+    readonly tidyInterProAnnotationTypes: Map<string, import("react-msaview/dist/types").Accession>;
     readonly tidyInterProAnnotations: {
         id: string;
         name: string;
@@ -457,8 +461,17 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     showEntire(): void;
     afterCreate(): void;
 } & {
+    /**
+     * #volatile
+     */
     rid: string | undefined;
+    /**
+     * #volatile
+     */
     progress: string;
+    /**
+     * #volatile
+     */
     error: unknown;
 } & {
     /**

package/dist/MsaViewPanel/model.js CHANGED Viewed

@@ -4,7 +4,6 @@ import { genomeToTranscriptSeqMapping } from 'g2p_mapper';
 import { autorun } from 'mobx';
 import { addDisposer, cast, types } from 'mobx-state-tree';
 import { MSAModelF } from 'react-msaview';
-// locals
 import { doLaunchBlast } from './doLaunchBlast';
 import { genomeToMSA } from './genomeToMSA';
 import { msaCoordToGenomeCoord } from './msaCoordToGenomeCoord';
@@ -42,8 +41,17 @@ export default function stateModelFactory() {
         zoomToBaseLevel: false,
     }))
         .volatile(() => ({
+        /**
+         * #volatile
+         */
         rid: undefined,
+        /**
+         * #volatile
+         */
         progress: '',
+        /**
+         * #volatile
+         */
         error: undefined,
     }))
         .views(self => ({

package/dist/MsaViewPanel/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/MsaViewPanel/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAA;AACnE,OAAO,~~EAAW~~,UAAU,EAAE,MAAM,oBAAoB,CAAA;~~AAExD~~,OAAO,EAAE,4BAA4B,EAAE,MAAM,YAAY,CAAA;AACzD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,~~EAAY~~,WAAW,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;~~AACpE~~,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAEzC,~~SAAS;AACT,~~OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAA;AAC/C,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;~~AAqB~~/D;;;;GAIG;AACH,MAAM,CAAC,OAAO,UAAU,iBAAiB;IACvC,OAAO,KAAK;SACT,OAAO,CACN,aAAa,EACb,SAAS,EAAE,EACX,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE;QACrB;;WAEG;QACH,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC1C;;WAEG;QACH,gBAAgB,EAAE,KAAK,CAAC,MAAM,EAAE;QAChC;;WAEG;QACH,mBAAmB,EAAE,KAAK,CAAC,KAAK,CAC9B,KAAK,CAAC,KAAK,CAAC;YACV,OAAO,EAAE,KAAK,CAAC,MAAM;YACrB,KAAK,EAAE,KAAK,CAAC,MAAM;YACnB,GAAG,EAAE,KAAK,CAAC,MAAM;SAClB,CAAC,CACH;QACD;;WAEG;QACH,WAAW,EAAE,KAAK,CAAC,MAAM,EAA2B;QAEpD;;WAEG;QACH,eAAe,EAAE,KAAK;KACvB,CAAC,CACH;SAEA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,GAAG,EAAE,SAA+B;QACpC,QAAQ,EAAE,EAAE;QACZ,KAAK,EAAE,SAAoB;KAC5B,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,gBAAgB,CAAC,OAAe,EAAE,QAAgB;YAChD,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,OAAO,CAAC,CAAA;YACjD,MAAM,GAAG,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC,CAAA;YACpB,IAAI,GAAG,IAAI,QAAQ,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;gBACjC,IAAI,CAAC,GAAG,CAAC,CAAA;gBACT,IAAI,CAAC,GAAG,CAAC,CAAA;gBACT,OAAO,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC9B,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE,CAAC;wBACtB,CAAC,EAAE,CAAA;oBACL,CAAC;gBACH,CAAC;gBACD,OAAO,CAAC,CAAA;YACV,CAAC;YACD,OAAO,SAAS,CAAA;QAClB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,kBAAkB;YACpB,OAAO,IAAI,CAAC,gBAAgB;gBAC1B,CAAC,CAAC,4BAA4B,CAAC,IAAI,CAAC,gBAAgB,CAAC;gBACrD,CAAC,CAAC,SAAS,CAAA;QACf,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,SAAS;YACX,OAAO,WAAW,CAAC,EAAE,KAAK,EAAE,IAAiC,EAAE,CAAC,CAAA;QAClE,CAAC;QACD;;WAEG;QACH,IAAI,SAAS;YACX,OAAO,SAAS,CAAA;QAClB,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,UAAU;YACZ,OAAO,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAA;QACxB,CAAC;QAED;;WAEG;QACH,IAAI,aAAa;YACf,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAClC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC,eAAe,CAAa,CAAA;QACnE,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,QAAQ,CAAC,CAAU;YACjB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,WAAW,CAAC,GAAW;YACrB,IAAI,CAAC,QAAQ,GAAG,GAAG,CAAA;QACrB,CAAC;QACD;;WAEG;QACH,MAAM,CAAC,GAAW;YAChB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,sBAAsB,CAAC,CAAY;YACjC,IAAI,CAAC,mBAAmB,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;QACD;;WAEG;QACH,wBAAwB,CAAC,CAAU;YACjC,IAAI,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QAClC,CAAC;QACD;;WAEG;QACH,wBAAwB;YACtB,IAAI,CAAC,mBAAmB,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;QACrC,CAAC;QACD;;WAEG;QACH,cAAc,CAAC,IAAkB;YAC/B,IAAI,CAAC,WAAW,GAAG,IAAI,CAAA;QACzB,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;;WAGG;QACH,kBAAkB;YAChB,OAAO;gBACL;oBACE,KAAK,EAAE,8BAA8B;oBACrC,OAAO,EAAE,IAAI,CAAC,eAAe;oBAC7B,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC,kBAAkB,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,CAAA;oBAChD,CAAC;iBACF;aACF,CAAA;QACH,CAAC;QACD;;WAEG;QACH,IAAI,UAAU;YACZ,OAAO,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAA;QACxB,CAAC;QAED;;WAEG;QACH,IAAI,aAAa;YACf,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAClC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC,eAAe,CAAa,CAAA;QACnE,CAAC;KACF,CAAC,CAAC;SAEF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;YACT,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,KAAK,IAAI,EAAE;gBACjB,IAAI,IAAI,CAAC,WAAW,EAAE,CAAC;oBACrB,IAAI,CAAC;wBACH,IAAI,CAAC,WAAW,CAAC,kBAAkB,CAAC,CAAA;wBACpC,MAAM,IAAI,GAAG,MAAM,aAAa,CAAC;4BAC/B,IAAI,EAAE,IAAiC;yBACxC,CAAC,CAAA;wBACF,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;wBAClB,IAAI,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;wBAC9B,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;oBACtB,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAClB,CAAC;4BAAS,CAAC;wBACT,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;oBACtB,CAAC;gBACH,CAAC;YACH,CAAC,CAAC,CACH,CAAA;YAED,sEAAsE;YACtE,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;gBACxC,MAAM,EAAE,GACN,QAAQ,KAAK,SAAS;oBACpB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAA;gBAC7D,MAAM,EAAE,GACN,aAAa,KAAK,SAAS;oBACzB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;gBAClE,IAAI,CAAC,sBAAsB,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACxD,CAAC,CAAC,CACH,CAAA;YAED,qCAAqC;YACrC,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;gBAC9D,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gBAC5C,MAAM,EAAE,GACN,aAAa,KAAK,SAAS;oBACzB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;gBAElE,IAAI,CAAC,EAAE,IAAI,CAAC,aAAa,EAAE,CAAC;oBAC1B,OAAM;gBACR,CAAC;gBAED,IAAI,eAAe,EAAE,CAAC;oBACpB,aAAa,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;gBACzB,CAAC;qBAAM,CAAC;oBACN,MAAM,CAAC,GACL,eAAe;yBACZ,GAAG,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAE,CAAC;wBACrC,EAAE,mBAAmB,CAAC,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,OAAO,CAAA;oBACnD,aAAa,CAAC,QAAQ,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;gBACrC,CAAC;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
1	+ {"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/MsaViewPanel/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAA;AACnE,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,4BAA4B,EAAE,MAAM,YAAY,CAAA;AACzD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,WAAW,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAC1D,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAEzC,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAA;AAC/C,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,MAAM,yBAAyB,CAAA;AAwB/D;;;;GAIG;AACH,MAAM,CAAC,OAAO,UAAU,iBAAiB;IACvC,OAAO,KAAK;SACT,OAAO,CACN,aAAa,EACb,SAAS,EAAE,EACX,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE;QACrB;;WAEG;QACH,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC1C;;WAEG;QACH,gBAAgB,EAAE,KAAK,CAAC,MAAM,EAAE;QAChC;;WAEG;QACH,mBAAmB,EAAE,KAAK,CAAC,KAAK,CAC9B,KAAK,CAAC,KAAK,CAAC;YACV,OAAO,EAAE,KAAK,CAAC,MAAM;YACrB,KAAK,EAAE,KAAK,CAAC,MAAM;YACnB,GAAG,EAAE,KAAK,CAAC,MAAM;SAClB,CAAC,CACH;QACD;;WAEG;QACH,WAAW,EAAE,KAAK,CAAC,MAAM,EAA2B;QAEpD;;WAEG;QACH,eAAe,EAAE,KAAK;KACvB,CAAC,CACH;SAEA,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf;;WAEG;QACH,GAAG,EAAE,SAA+B;QACpC;;WAEG;QACH,QAAQ,EAAE,EAAE;QACZ;;WAEG;QACH,KAAK,EAAE,SAAoB;KAC5B,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,gBAAgB,CAAC,OAAe,EAAE,QAAgB;YAChD,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,OAAO,CAAC,CAAA;YACjD,MAAM,GAAG,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC,CAAA;YACpB,IAAI,GAAG,IAAI,QAAQ,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;gBACjC,IAAI,CAAC,GAAG,CAAC,CAAA;gBACT,IAAI,CAAC,GAAG,CAAC,CAAA;gBACT,OAAO,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC9B,OAAO,GAAG,CAAC,CAAC,CAAC,KAAK,GAAG,EAAE,CAAC;wBACtB,CAAC,EAAE,CAAA;oBACL,CAAC;gBACH,CAAC;gBACD,OAAO,CAAC,CAAA;YACV,CAAC;YACD,OAAO,SAAS,CAAA;QAClB,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,kBAAkB;YACpB,OAAO,IAAI,CAAC,gBAAgB;gBAC1B,CAAC,CAAC,4BAA4B,CAAC,IAAI,CAAC,gBAAgB,CAAC;gBACrD,CAAC,CAAC,SAAS,CAAA;QACf,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,SAAS;YACX,OAAO,WAAW,CAAC,EAAE,KAAK,EAAE,IAAiC,EAAE,CAAC,CAAA;QAClE,CAAC;QACD;;WAEG;QACH,IAAI,SAAS;YACX,OAAO,SAAS,CAAA;QAClB,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,UAAU;YACZ,OAAO,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAA;QACxB,CAAC;QAED;;WAEG;QACH,IAAI,aAAa;YACf,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAClC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC,eAAe,CAAa,CAAA;QACnE,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,QAAQ,CAAC,CAAU;YACjB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,WAAW,CAAC,GAAW;YACrB,IAAI,CAAC,QAAQ,GAAG,GAAG,CAAA;QACrB,CAAC;QACD;;WAEG;QACH,MAAM,CAAC,GAAW;YAChB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,sBAAsB,CAAC,CAAY;YACjC,IAAI,CAAC,mBAAmB,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;QACD;;WAEG;QACH,wBAAwB,CAAC,CAAU;YACjC,IAAI,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QAClC,CAAC;QACD;;WAEG;QACH,wBAAwB;YACtB,IAAI,CAAC,mBAAmB,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;QACrC,CAAC;QACD;;WAEG;QACH,cAAc,CAAC,IAAkB;YAC/B,IAAI,CAAC,WAAW,GAAG,IAAI,CAAA;QACzB,CAAC;KACF,CAAC,CAAC;SAEF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;;WAGG;QACH,kBAAkB;YAChB,OAAO;gBACL;oBACE,KAAK,EAAE,8BAA8B;oBACrC,OAAO,EAAE,IAAI,CAAC,eAAe;oBAC7B,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,GAAG,EAAE;wBACZ,IAAI,CAAC,kBAAkB,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,CAAA;oBAChD,CAAC;iBACF;aACF,CAAA;QACH,CAAC;QACD;;WAEG;QACH,IAAI,UAAU;YACZ,OAAO,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAA;QACxB,CAAC;QAED;;WAEG;QACH,IAAI,aAAa;YACf,MAAM,EAAE,KAAK,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAClC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC,eAAe,CAAa,CAAA;QACnE,CAAC;KACF,CAAC,CAAC;SAEF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,WAAW;YACT,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,KAAK,IAAI,EAAE;gBACjB,IAAI,IAAI,CAAC,WAAW,EAAE,CAAC;oBACrB,IAAI,CAAC;wBACH,IAAI,CAAC,WAAW,CAAC,kBAAkB,CAAC,CAAA;wBACpC,MAAM,IAAI,GAAG,MAAM,aAAa,CAAC;4BAC/B,IAAI,EAAE,IAAiC;yBACxC,CAAC,CAAA;wBACF,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;wBAClB,IAAI,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;wBAC9B,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;oBACtB,CAAC;oBAAC,OAAO,CAAC,EAAE,CAAC;wBACX,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;oBAClB,CAAC;4BAAS,CAAC;wBACT,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;oBACtB,CAAC;gBACH,CAAC;YACH,CAAC,CAAC,CACH,CAAA;YAED,sEAAsE;YACtE,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EAAE,QAAQ,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;gBACxC,MAAM,EAAE,GACN,QAAQ,KAAK,SAAS;oBACpB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAA;gBAC7D,MAAM,EAAE,GACN,aAAa,KAAK,SAAS;oBACzB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;gBAClE,IAAI,CAAC,sBAAsB,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACxD,CAAC,CAAC,CACH,CAAA;YAED,qCAAqC;YACrC,WAAW,CACT,IAAI,EACJ,OAAO,CAAC,GAAG,EAAE;gBACX,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,aAAa,EAAE,GAAG,IAAI,CAAA;gBAC9D,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;gBAC5C,MAAM,EAAE,GACN,aAAa,KAAK,SAAS;oBACzB,CAAC,CAAC,SAAS;oBACX,CAAC,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAA;gBAElE,IAAI,CAAC,EAAE,IAAI,CAAC,aAAa,EAAE,CAAC;oBAC1B,OAAM;gBACR,CAAC;gBAED,IAAI,eAAe,EAAE,CAAC;oBACpB,aAAa,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;gBACzB,CAAC;qBAAM,CAAC;oBACN,MAAM,CAAC,GACL,eAAe;yBACZ,GAAG,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAE,CAAC;wBACrC,EAAE,mBAAmB,CAAC,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,OAAO,CAAA;oBACnD,aAAa,CAAC,QAAQ,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;gBACrC,CAAC;YACH,CAAC,CAAC,CACH,CAAA;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/dist/MsaViewPanel/msaCoordToGenomeCoord.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"msaCoordToGenomeCoord.js","sourceRoot":"","sources":["../../src/MsaViewPanel/msaCoordToGenomeCoord.ts"],"names":[],"mappings":"~~AAGA~~,MAAM,UAAU,qBAAqB,CAAC,EACpC,KAAK,EACL,KAAK,EAAE,QAAQ,GAIhB;IACC,MAAM,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACpC,IAAI,kBAAkB,KAAK,SAAS,EAAE,CAAC;QACrC,OAAM;IACR,CAAC;IAED,MAAM,CAAC,GAAG,QAAQ,CAAA;IAClB,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAA;IAClE,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;IACtE,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,kBAAkB,CAAA;IAC3C,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,OAAO,CAAC,KAAK,SAAS,IAAI,CAAC,KAAK,SAAS;QACvC,CAAC,CAAC;YACE,OAAO;YACP,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;YACrB,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;SACpB;QACH,CAAC,CAAC,SAAS,CAAA;AACf,CAAC"}
1	+ {"version":3,"file":"msaCoordToGenomeCoord.js","sourceRoot":"","sources":["../../src/MsaViewPanel/msaCoordToGenomeCoord.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,qBAAqB,CAAC,EACpC,KAAK,EACL,KAAK,EAAE,QAAQ,GAIhB;IACC,MAAM,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACpC,IAAI,kBAAkB,KAAK,SAAS,EAAE,CAAC;QACrC,OAAM;IACR,CAAC;IAED,MAAM,CAAC,GAAG,QAAQ,CAAA;IAClB,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAA;IAClE,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;IACtE,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,kBAAkB,CAAA;IAC3C,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,OAAO,CAAC,KAAK,SAAS,IAAI,CAAC,KAAK,SAAS;QACvC,CAAC,CAAC;YACE,OAAO;YACP,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;YACrB,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;SACpB;QACH,CAAC,CAAC,SAAS,CAAA;AACf,CAAC"}

package/dist/OpenInNewIcon.d.ts CHANGED Viewed

@@ -1,3 +1,3 @@
 import React from 'react';
-import { SvgIconProps } from '@mui/material';
+import type { SvgIconProps } from '@mui/material';
 export default function OpenInNewIcon(props: SvgIconProps): React.JSX.Element;

package/dist/OpenInNewIcon.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"OpenInNewIcon.js","sourceRoot":"","sources":["../src/OpenInNewIcon.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,OAAO,~~EAAgB~~,MAAM,eAAe,CAAA;~~AAErD~~,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,KAAmB;IACvD,OAAO,CACL,oBAAC,OAAO,OAAK,KAAK;QAChB,8BAAM,CAAC,EAAC,eAAe,EAAC,IAAI,EAAC,MAAM,GAAG;QACtC,8BAAM,CAAC,EAAC,oIAAoI,GAAG,CACvI,CACX,CAAA;AACH,CAAC"}
1	+ {"version":3,"file":"OpenInNewIcon.js","sourceRoot":"","sources":["../src/OpenInNewIcon.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAIvC,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,KAAmB;IACvD,OAAO,CACL,oBAAC,OAAO,OAAK,KAAK;QAChB,8BAAM,CAAC,EAAC,eAAe,EAAC,IAAI,EAAC,MAAM,GAAG;QACtC,8BAAM,CAAC,EAAC,oIAAoI,GAAG,CACvI,CACX,CAAA;AACH,CAAC"}

package/dist/TextField2.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
 import React from 'react';
-import { TextFieldProps } from '@mui/material';
+import type { TextFieldProps } from '@mui/material';
 declare function TextField2({ children, ...rest }: TextFieldProps): React.JSX.Element;
 export default TextField2;

package/dist/TextField2.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"TextField2.js","sourceRoot":"","sources":["../src/TextField2.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,SAAS,~~EAAkB~~,MAAM,eAAe,CAAA;~~AAEzD~~,SAAS,UAAU,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAkB;IACvD,OAAO,CACL;QACE,oBAAC,SAAS,OAAK,IAAI,IAAG,QAAQ,CAAa,CACvC,CACP,CAAA;AACH,CAAC;AAED,eAAe,UAAU,CAAA"}
1	+ {"version":3,"file":"TextField2.js","sourceRoot":"","sources":["../src/TextField2.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAIzC,SAAS,UAAU,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAkB;IACvD,OAAO,CACL;QACE,oBAAC,SAAS,OAAK,IAAI,IAAG,QAAQ,CAAa,CACvC,CACP,CAAA;AACH,CAAC;AAED,eAAe,UAAU,CAAA"}

package/dist/config.json ADDED Viewed

@@ -0,0 +1,8 @@
+{
+  "plugins": [
+    {
+      "name": "MsaView",
+      "url": "https://unpkg.com/jbrowse-plugin-msaview/dist/jbrowse-plugin-msaview.umd.production.min.js"
+    }
+  ]
+}