jbrowse-plugin-msaview 2.0.3 → 2.0.5

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Files changed (84) hide show
  1. package/dist/AddHighlightModel/GenomeMouseoverHighlight.js +1 -1
  2. package/dist/AddHighlightModel/GenomeMouseoverHighlight.js.map +1 -1
  3. package/dist/AddHighlightModel/HighlightComponents.js +1 -1
  4. package/dist/AddHighlightModel/HighlightComponents.js.map +1 -1
  5. package/dist/AddHighlightModel/MsaToGenomeHighlight.js +2 -1
  6. package/dist/AddHighlightModel/MsaToGenomeHighlight.js.map +1 -1
  7. package/dist/AddHighlightModel/index.js.map +1 -1
  8. package/dist/AddHighlightModel/util.d.ts +2 -2
  9. package/dist/AddHighlightModel/util.js +1 -1
  10. package/dist/AddHighlightModel/util.js.map +1 -1
  11. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js +8 -3
  12. package/dist/LaunchMsaView/components/LaunchMsaViewDialog.js.map +1 -1
  13. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.js +17 -9
  14. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.js.map +1 -1
  15. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js +1 -1
  16. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.js.map +1 -1
  17. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.js.map +1 -1
  18. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js +51 -30
  19. package/dist/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.js.map +1 -1
  20. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js +9 -5
  21. package/dist/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.js.map +1 -1
  22. package/dist/LaunchMsaView/components/TabUtils.d.ts +1 -5
  23. package/dist/LaunchMsaView/components/TabUtils.js +1 -7
  24. package/dist/LaunchMsaView/components/TabUtils.js.map +1 -1
  25. package/dist/LaunchMsaView/components/tabUtil.d.ts +4 -0
  26. package/dist/LaunchMsaView/components/tabUtil.js +7 -0
  27. package/dist/LaunchMsaView/components/tabUtil.js.map +1 -0
  28. package/dist/LaunchMsaView/index.js +4 -5
  29. package/dist/LaunchMsaView/index.js.map +1 -1
  30. package/dist/LaunchMsaView/util.d.ts +1 -1
  31. package/dist/LaunchMsaView/util.js +1 -1
  32. package/dist/LaunchMsaView/util.js.map +1 -1
  33. package/dist/MsaViewPanel/components/LoadingBLAST.js +2 -2
  34. package/dist/MsaViewPanel/components/LoadingBLAST.js.map +1 -1
  35. package/dist/MsaViewPanel/components/MsaViewPanel.js.map +1 -1
  36. package/dist/MsaViewPanel/components/RIDLink.js.map +1 -1
  37. package/dist/MsaViewPanel/doLaunchBlast.js +18 -5
  38. package/dist/MsaViewPanel/doLaunchBlast.js.map +1 -1
  39. package/dist/MsaViewPanel/genomeToMSA.js.map +1 -1
  40. package/dist/MsaViewPanel/index.js.map +1 -1
  41. package/dist/MsaViewPanel/model.d.ts +39 -35
  42. package/dist/MsaViewPanel/model.js +7 -5
  43. package/dist/MsaViewPanel/model.js.map +1 -1
  44. package/dist/MsaViewPanel/msaCoordToGenomeCoord.js +4 -4
  45. package/dist/MsaViewPanel/msaCoordToGenomeCoord.js.map +1 -1
  46. package/dist/OpenInNewIcon.js.map +1 -1
  47. package/dist/TextField2.js.map +1 -1
  48. package/dist/index.js +2 -2
  49. package/dist/index.js.map +1 -1
  50. package/dist/jbrowse-plugin-msaview.umd.production.min.js +84 -30
  51. package/dist/jbrowse-plugin-msaview.umd.production.min.js.map +4 -4
  52. package/dist/utils/msa.js +4 -0
  53. package/dist/utils/msa.js.map +1 -1
  54. package/dist/utils/ncbiBlast.js +8 -5
  55. package/dist/utils/ncbiBlast.js.map +1 -1
  56. package/package.json +24 -22
  57. package/src/AddHighlightModel/GenomeMouseoverHighlight.tsx +4 -2
  58. package/src/AddHighlightModel/HighlightComponents.tsx +3 -2
  59. package/src/AddHighlightModel/MsaToGenomeHighlight.tsx +9 -6
  60. package/src/AddHighlightModel/index.tsx +1 -0
  61. package/src/AddHighlightModel/util.ts +1 -1
  62. package/src/LaunchMsaView/components/LaunchMsaViewDialog.tsx +13 -4
  63. package/src/LaunchMsaView/components/NewNCBIBlastQuery/NcbiBlastPanel.tsx +22 -13
  64. package/src/LaunchMsaView/components/NewNCBIBlastQuery/calculateProteinSequence.ts +2 -2
  65. package/src/LaunchMsaView/components/NewNCBIBlastQuery/ncbiBlastLaunchView.ts +1 -0
  66. package/src/LaunchMsaView/components/NewNCBIBlastQuery/useFeatureSequence.ts +69 -34
  67. package/src/LaunchMsaView/components/PreLoadedMSA/PreLoadedMSADataPanel.tsx +19 -14
  68. package/src/LaunchMsaView/components/TabUtils.tsx +2 -7
  69. package/src/LaunchMsaView/components/tabUtil.ts +6 -0
  70. package/src/LaunchMsaView/index.ts +39 -33
  71. package/src/LaunchMsaView/util.ts +2 -2
  72. package/src/MsaViewPanel/components/LoadingBLAST.tsx +6 -4
  73. package/src/MsaViewPanel/components/MsaViewPanel.tsx +1 -0
  74. package/src/MsaViewPanel/components/RIDLink.tsx +2 -0
  75. package/src/MsaViewPanel/doLaunchBlast.ts +25 -7
  76. package/src/MsaViewPanel/genomeToMSA.ts +2 -1
  77. package/src/MsaViewPanel/index.ts +1 -0
  78. package/src/MsaViewPanel/model.ts +10 -7
  79. package/src/MsaViewPanel/msaCoordToGenomeCoord.ts +4 -4
  80. package/src/OpenInNewIcon.tsx +1 -0
  81. package/src/TextField2.tsx +1 -0
  82. package/src/index.ts +2 -2
  83. package/src/utils/msa.ts +3 -0
  84. package/src/utils/ncbiBlast.ts +22 -10

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