jbrowse-plugin-msaview 2.0.3 → 2.0.5

package/dist/MsaViewPanel/doLaunchBlast.js

@@ -1,6 +1,6 @@
+import { makeId, strip, } from '../LaunchMsaView/components/NewNCBIBlastQuery/util';
 import { launchMSA } from '../utils/msa';
 import { queryBlast } from '../utils/ncbiBlast';
-import { makeId, strip, } from '../LaunchMsaView/components/NewNCBIBlastQuery/util';
 export async function doLaunchBlast({ self, }) {
     const { blastDatabase, blastProgram, msaAlgorithm, proteinSequence } = self.blastParams;
     const query = proteinSequence.replaceAll('*', '').replaceAll('&', '');
@@ -8,19 +8,32 @@ export async function doLaunchBlast({ self, }) {
         query,
         blastDatabase,
         blastProgram,
-        onProgress: arg => self.setProgress(arg),
-        onRid: rid => self.setRid(rid),
+        onProgress: arg => {
+            self.setProgress(arg);
+        },
+        onRid: rid => {
+            self.setRid(rid);
+        },
     });
     const sequence = [
         `>QUERY\n${query}`,
         ...hits
-            .map(h => [makeId(h.description[0]), strip(h.hsps[0].hseq)])
+            .map(h => [
+            makeId(h.description[0] ?? {
+                accession: 'unknown',
+                id: 'unknown',
+                sciname: 'unknown',
+            }),
+            strip(h.hsps[0]?.hseq ?? ''),
+        ])
             .map(([id, seq]) => `>${id}\n${seq}`),
     ].join('\n');
     const data = await launchMSA({
         algorithm: msaAlgorithm,
         sequence,
-        onProgress: arg => self.setProgress(arg),
+        onProgress: arg => {
+            self.setProgress(arg);
+        },
     });
     return data;
 }

package/dist/MsaViewPanel/doLaunchBlast.js.map

@@ -1 +1 @@
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package/dist/MsaViewPanel/genomeToMSA.js.map

@@ -1 +1 @@
-{"version":3,"file":"genomeToMSA.js","sourceRoot":"","sources":["../../src/MsaViewPanel/genomeToMSA.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AAGrC,MAAM,UAAU,WAAW,CAAC,EAAE,KAAK,EAAwC;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACrC,MAAM,EAAE,kBAAkB,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACnD,IACE,aAAa,EAAE,WAAW;QAC1B,kBAAkB;QAClB,YAAY,CAAC,OAAO,CAAC,EACrB,CAAC;QACD,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,aAAa,CAAA;QACnD,MAAM,EAAE,GAAG,EAAE,GAAG,kBAAkB,CAAA;QAClC,MAAM,GAAG,GAAG,GAAG,CAAC,UAAU,CAAC,CAAA;QAC3B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;YACtB,OAAO,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,GAAG,GAAG,CAAC,CAAC,CAAA;QACjE,CAAC;IACH,CAAC;IACD,OAAO,SAAS,CAAA;AAClB,CAAC"}
+{"version":3,"file":"genomeToMSA.js","sourceRoot":"","sources":["../../src/MsaViewPanel/genomeToMSA.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAG/C,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AAErC,MAAM,UAAU,WAAW,CAAC,EAAE,KAAK,EAAwC;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACrC,MAAM,EAAE,kBAAkB,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACnD,IACE,aAAa,EAAE,WAAW;QAC1B,kBAAkB;QAClB,YAAY,CAAC,OAAO,CAAC,EACrB,CAAC;QACD,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC,aAAa,CAAA;QACnD,MAAM,EAAE,GAAG,EAAE,GAAG,kBAAkB,CAAA;QAClC,MAAM,GAAG,GAAG,GAAG,CAAC,UAAU,CAAC,CAAA;QAC3B,IAAI,GAAG,KAAK,SAAS,EAAE,CAAC;YACtB,OAAO,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,GAAG,GAAG,CAAC,CAAC,CAAA;QACjE,CAAC;IACH,CAAC;IACD,OAAO,SAAS,CAAA;AAClB,CAAC"}

package/dist/MsaViewPanel/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MsaViewPanel/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAG5B,OAAO,QAAQ,MAAM,8CAA8C,CAAA;AAEnE,SAAS;AACT,OAAO,iBAAiB,MAAM,SAAS,CAAA;AAEvC,SAAS;AACT,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEpE,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,aAA4B;IAC3D,aAAa,CAAC,WAAW,CAAC,GAAG,EAAE;QAC7B,OAAO,IAAI,QAAQ,CAAC;YAClB,IAAI,EAAE,SAAS;YACf,UAAU,EAAE,iBAAiB,EAAE;YAC/B,cAAc,EAAE,YAAY;SAC7B,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC"}

package/dist/MsaViewPanel/model.d.ts

@@ -1,6 +1,6 @@
-import { Instance } from 'mobx-state-tree';
 import { Feature } from '@jbrowse/core/util';
 import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import { Instance } from 'mobx-state-tree';
 type LGV = LinearGenomeViewModel;
 type MaybeLGV = LGV | undefined;
 export interface IRegion {
@@ -25,14 +25,10 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 } & {
-    drawLabels: import("mobx-state-tree" /**
-     * #property
-     */).IType<boolean | undefined, boolean, boolean>;
+    drawLabels: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     labelsAlignRight: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     treeAreaWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    treeWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree" /**
-     * #property
-     */).ISimpleType<number>, [undefined]>;
+    treeWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     treeWidthMatchesArea: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     showBranchLen: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     drawTree: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -54,12 +50,8 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     rowHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
     scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
     scrollX: import("mobx-state-tree").IType<number | undefined, number, number>;
-    colWidth: import("mobx-state-tree" /**
-     * #action
-     */).IType<number | undefined, number, number>;
-    treeFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree" /**
-     * #action
-     */).ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    colWidth: import("mobx-state-tree").IType<number | undefined, number, number>;
+    treeFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
         uri: import("mobx-state-tree").ISimpleType<string>;
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -231,6 +223,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
         treeMetadata: string | undefined;
     }>, [undefined]>;
     featureFilters: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
+    relativeTo: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
     connectedViewId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     connectedFeature: import("mobx-state-tree").IType<any, any, any>;
@@ -252,7 +245,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
 } & {
     queueOfDialogs: [import("@jbrowse/core/util").DialogComponentType, any][];
 } & {
-    readonly DialogComponent: import("@jbrowse/core/util").DialogComponentType;
+    readonly DialogComponent: import("@jbrowse/core/util").DialogComponentType | undefined;
     readonly DialogProps: any;
 } & {
     removeActiveDialog(): void;
@@ -295,6 +288,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     } | undefined;
     interProAnnotations: undefined | Record<string, import("react-msaview/dist/launchInterProScan").InterProScanResults>;
 } & {
+    drawRelativeTo(id: string): void;
     setHideGaps(arg: boolean): void;
     setAllowedGappyness(arg: number): void;
     setContrastLettering(arg: boolean): void;
@@ -317,6 +311,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     setData(data: {
         msa?: string;
         tree?: string;
+        treeMetadata?: string;
     }): void;
     setMSAFilehandle(msaFilehandle?: import("@jbrowse/core/util").FileLocation): void;
     setTreeFilehandle(treeFilehandle?: import("@jbrowse/core/util").FileLocation): void;
@@ -324,6 +319,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     setTree(result: string): void;
     setTreeMetadata(result: string): void;
 } & {
+    readonly realAllowedGappyness: number;
     readonly actuallyShowDomains: boolean;
     readonly viewInitialized: boolean;
     readonly width: number;
@@ -331,19 +327,12 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     extraViewMenuItems(): never[];
     readonly colorScheme: Record<string, string>;
     readonly header: {};
-    getRowData(name: string): {
-        data: {
-            name: string;
-            accession: string;
-            dbxref: string;
-        } | undefined;
-    };
     readonly alignmentNames: string[];
     readonly noTree: boolean;
     readonly noDomains: boolean;
-    readonly menuItems: never[];
+    menuItems(): never[];
     readonly treeMetadata: any;
-    readonly MSA: import("react-msaview/dist/parsers/StockholmMSA").default | import("react-msaview/dist/parsers/FastaMSA").default | import("react-msaview/dist/parsers/ClustalMSA").default | null;
+    readonly MSA: import("react-msaview/dist/parsers/StockholmMSA").default | import("react-msaview/dist/parsers/FastaMSA").default | import("react-msaview/dist/parsers/EmfMSA").default | import("react-msaview/dist/parsers/ClustalMSA").default | null;
     readonly numColumns: number;
     readonly tree: import("react-msaview/dist/util").NodeWithIds;
     readonly rowNames: string[];
@@ -352,7 +341,10 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly msaAreaWidth: number;
     readonly treeAreaWidthMinusMargin: number;
     readonly blanks: number[];
+    readonly blanksSet: Set<number>;
     readonly rows: [string, string][];
+    readonly numRows: number;
+    readonly rowMap: Map<string, string>;
     readonly columns: {
         [k: string]: string;
     };
@@ -372,7 +364,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly blocksX: number[];
     readonly blocksY: number[];
 } & {
-    readonly blocks2d: number[][];
+    readonly blocks2d: (readonly [number, number])[];
     readonly isLoading: boolean;
     readonly maxScrollX: number;
     readonly showMsaLetters: boolean;
@@ -399,17 +391,19 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly secondaryStructureConsensus: string | undefined;
     readonly seqConsensus: string | undefined;
     readonly conservation: string[];
-    readonly adapterTrackModels: import("react-msaview/dist/model").ITextTrack[];
-    readonly tracks: import("react-msaview/dist/model").ITextTrack[];
+    readonly adapterTrackModels: import("react-msaview/dist/model").BasicTrack[];
+    readonly tracks: import("react-msaview/dist/model").BasicTrack[];
     readonly turnedOnTracks: import("react-msaview/dist/model").ITextTrack[];
     readonly showHorizontalScrollbar: boolean;
-    globalCoordToRowSpecificSeqCoord(rowName: string, position: number): number;
+    readonly rowNamesSet: Map<string, number>;
+    mouseOverCoordToRowLetter(rowName: string, position: number): string | undefined;
+    mouseOverCoordToGapRemovedRowCoord(rowName: string, position: number): number | undefined;
     seqCoordToRowSpecificGlobalCoord(rowName: string, position: number): number;
 } & {
     readonly msaAreaHeight: number;
     readonly totalTrackAreaHeight: number;
-    readonly tidyTypes: Map<string, import("react-msaview/dist/model").Accession>;
-    readonly tidyAnnotations: {
+    readonly tidyInterProAnnotationTypes: Map<string, import("react-msaview/dist/model").Accession>;
+    readonly tidyInterProAnnotations: {
         id: string;
         name: string;
         accession: string;
@@ -417,7 +411,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
         start: number;
         end: number;
     }[];
-    readonly tidyFilteredAnnotations: {
+    readonly tidyFilteredInterProAnnotations: {
         id: string;
         name: string;
         accession: string;
@@ -425,14 +419,14 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
         start: number;
         end: number;
     }[];
-    readonly tidyFilteredGatheredAnnotations: Record<string, {
+    readonly tidyFilteredGatheredInterProAnnotations: Record<string, {
         id: string;
         name: string;
         accession: string;
         description: string;
         start: number;
         end: number;
-    }[] | undefined>;
+    }[]>;
 } & {
     readonly showVerticalScrollbar: boolean;
 } & {
@@ -441,6 +435,14 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     readonly strokePalette: {
         [k: string]: string;
     };
+    getRowData(name: string): {
+        data: {
+            name: string;
+            accession: string | undefined;
+            dbxref: string | undefined;
+        } | undefined;
+        treeMetadata: any;
+    };
 } & {
     setHeaderHeight(arg: number): void;
     reset(): void;
@@ -452,6 +454,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     incrementRef(): void;
     initFilter(arg: string): void;
     setFilter(arg: string, flag: boolean): void;
+    showEntire(): void;
     afterCreate(): void;
 } & {
     rid: string | undefined;
@@ -467,8 +470,8 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
      * #getter
      */
     readonly transcriptToMsaMap: {
-        g2p: Record<number, number | undefined>;
-        p2g: Record<number, number | undefined>;
+        g2p: Record<number, number>;
+        p2g: Record<number, number>;
         refName: string;
         strand: number;
     } | undefined;
@@ -545,7 +548,6 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
 } & {
     afterCreate(): void;
 }, import("mobx-state-tree")._NotCustomized, {
-    height: number;
     drawLabels: boolean;
     labelsAlignRight: boolean;
     treeAreaWidth: number;
@@ -570,6 +572,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     colWidth: number;
     currentAlignment: number;
     type: "MsaView";
+    height: number;
     treeFilehandle: {
         locationType: "UriLocation";
         uri: string;
@@ -623,6 +626,7 @@ export default function stateModelFactory(): import("mobx-state-tree").IModelTyp
     showOnly: string | undefined;
     turnedOffTracks: import("mobx").IKeyValueMap<boolean>;
     featureFilters: import("mobx").IKeyValueMap<boolean>;
+    relativeTo: string | undefined;
     data: {
         treeMetadata?: string | undefined;
         msa?: string | undefined;

package/dist/MsaViewPanel/model.js

@@ -1,13 +1,13 @@
-import { addDisposer, cast, types } from 'mobx-state-tree';
+import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes';
+import { getSession } from '@jbrowse/core/util';
+import { genomeToTranscriptSeqMapping } from 'g2p_mapper';
 import { autorun } from 'mobx';
+import { addDisposer, cast, types } from 'mobx-state-tree';
 import { MSAModelF } from 'react-msaview';
-import { getSession } from '@jbrowse/core/util';
-import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes';
 // locals
 import { doLaunchBlast } from './doLaunchBlast';
 import { genomeToMSA } from './genomeToMSA';
 import { msaCoordToGenomeCoord } from './msaCoordToGenomeCoord';
-import { genomeToTranscriptSeqMapping } from 'g2p_mapper';
 /**
  * #stateModel MsaViewPlugin
  * extends
@@ -166,7 +166,9 @@ export default function stateModelFactory() {
                     label: 'Zoom to base level on click?',
                     checked: self.zoomToBaseLevel,
                     type: 'checkbox',
-                    onClick: () => self.setZoomToBaseLevel(!self.zoomToBaseLevel),
+                    onClick: () => {
+                        self.setZoomToBaseLevel(!self.zoomToBaseLevel);
+                    },
                 },
             ];
         },

package/dist/MsaViewPanel/model.js.map

@@ -1 +1 @@
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package/dist/MsaViewPanel/msaCoordToGenomeCoord.js

@@ -1,11 +1,11 @@
 export function msaCoordToGenomeCoord({ model, coord: mouseCol, }) {
     const { transcriptToMsaMap } = model;
-    if (mouseCol === undefined || transcriptToMsaMap === undefined) {
+    if (transcriptToMsaMap === undefined) {
         return;
     }
-    const c = mouseCol - 1;
-    const k1 = model.globalCoordToRowSpecificSeqCoord('QUERY', c) || 0;
-    const k2 = model.globalCoordToRowSpecificSeqCoord('QUERY', c + 1) || 0;
+    const c = mouseCol;
+    const k1 = model.seqCoordToRowSpecificGlobalCoord('QUERY', c) || 0;
+    const k2 = model.seqCoordToRowSpecificGlobalCoord('QUERY', c + 1) || 0;
     const { refName, p2g } = transcriptToMsaMap;
     const s = p2g[k1];
     const e = p2g[k2];

package/dist/MsaViewPanel/msaCoordToGenomeCoord.js.map

@@ -1 +1 @@
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+{"version":3,"file":"msaCoordToGenomeCoord.js","sourceRoot":"","sources":["../../src/MsaViewPanel/msaCoordToGenomeCoord.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,qBAAqB,CAAC,EACpC,KAAK,EACL,KAAK,EAAE,QAAQ,GAIhB;IACC,MAAM,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IACpC,IAAI,kBAAkB,KAAK,SAAS,EAAE,CAAC;QACrC,OAAM;IACR,CAAC;IAED,MAAM,CAAC,GAAG,QAAQ,CAAA;IAClB,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAA;IAClE,MAAM,EAAE,GAAG,KAAK,CAAC,gCAAgC,CAAC,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;IACtE,MAAM,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,kBAAkB,CAAA;IAC3C,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,MAAM,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC,CAAA;IACjB,OAAO,CAAC,KAAK,SAAS,IAAI,CAAC,KAAK,SAAS;QACvC,CAAC,CAAC;YACE,OAAO;YACP,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;YACrB,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;SACpB;QACH,CAAC,CAAC,SAAS,CAAA;AACf,CAAC"}

package/dist/OpenInNewIcon.js.map

@@ -1 +1 @@
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+{"version":3,"file":"OpenInNewIcon.js","sourceRoot":"","sources":["../src/OpenInNewIcon.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,OAAO,EAAgB,MAAM,eAAe,CAAA;AAErD,MAAM,CAAC,OAAO,UAAU,aAAa,CAAC,KAAmB;IACvD,OAAO,CACL,oBAAC,OAAO,OAAK,KAAK;QAChB,8BAAM,CAAC,EAAC,eAAe,EAAC,IAAI,EAAC,MAAM,GAAG;QACtC,8BAAM,CAAC,EAAC,oIAAoI,GAAG,CACvI,CACX,CAAA;AACH,CAAC"}

package/dist/TextField2.js.map

@@ -1 +1 @@
-{"version":3,"file":"TextField2.js","sourceRoot":"","sources":["../src/TextField2.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,SAAS,EAAkB,MAAM,eAAe,CAAA;AAEzD,SAAS,UAAU,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAkB;IACvD,OAAO,CACL;QACE,oBAAC,SAAS,OAAK,IAAI,IAAG,QAAQ,CAAa,CACvC,CACP,CAAA;AACH,CAAC;AAED,eAAe,UAAU,CAAA"}
+{"version":3,"file":"TextField2.js","sourceRoot":"","sources":["../src/TextField2.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,SAAS,EAAkB,MAAM,eAAe,CAAA;AAEzD,SAAS,UAAU,CAAC,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAkB;IACvD,OAAO,CACL;QACE,oBAAC,SAAS,OAAK,IAAI,IAAG,QAAQ,CAAa,CACvC,CACP,CAAA;AACH,CAAC;AAED,eAAe,UAAU,CAAA"}

package/dist/index.js

@@ -4,9 +4,9 @@ import { isAbstractMenuManager } from '@jbrowse/core/util';
 import GridOn from '@mui/icons-material/GridOn';
 // locals
 import { version } from '../package.json';
-import MsaViewF from './MsaViewPanel';
-import LaunchMsaViewF from './LaunchMsaView';
 import AddHighlightModelF from './AddHighlightModel';
+import LaunchMsaViewF from './LaunchMsaView';
+import MsaViewF from './MsaViewPanel';
 export default class MsaViewPlugin extends Plugin {
     constructor() {
         super(...arguments);

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,MAAM,MAAM,sBAAsB,CAAA;AAEzC,OAAO,EAAwB,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AAEhF,QAAQ;AACR,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAE/C,SAAS;AACT,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACzC,OAAO,kBAAkB,MAAM,qBAAqB,CAAA;AACpD,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,QAAQ,MAAM,gBAAgB,CAAA;AAErC,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,MAAM;IAAjD;;QACE,SAAI,GAAG,eAAe,CAAA;QACtB,YAAO,GAAG,OAAO,CAAA;IAmBnB,CAAC;IAjBC,OAAO,CAAC,aAA4B;QAClC,QAAQ,CAAC,aAAa,CAAC,CAAA;QACvB,cAAc,CAAC,aAAa,CAAC,CAAA;QAC7B,kBAAkB,CAAC,aAAa,CAAC,CAAA;IACnC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,qBAAqB,CAAC,aAAa,CAAC,SAAS,CAAC,EAAE,CAAC;YACnD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,kCAAkC;gBACzC,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAA;gBAChC,CAAC;aACF,CAAC,CAAA;QACJ,CAAC;IACH,CAAC;CACF"}