jbrowse-plugin-mafviewer 1.4.3 → 1.4.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/dist/BigMafAdapter/BigMafAdapter.js +4 -5
- package/dist/BigMafAdapter/BigMafAdapter.js.map +1 -1
- package/dist/BigMafAdapter/configSchema.d.ts +2 -2
- package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js +39 -109
- package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js.map +1 -1
- package/dist/LinearMafDisplay/components/MAFTooltip.d.ts +0 -3
- package/dist/LinearMafDisplay/components/MAFTooltip.js.map +1 -1
- package/dist/LinearMafDisplay/components/MsaHighlightOverlay.d.ts +9 -0
- package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js +34 -0
- package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js.map +1 -0
- package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js +2 -2
- package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js.map +1 -1
- package/dist/LinearMafDisplay/components/Sidebar/RectBg.d.ts +1 -1
- package/dist/LinearMafDisplay/components/Sidebar/RectBg.js +2 -3
- package/dist/LinearMafDisplay/components/Sidebar/RectBg.js.map +1 -1
- package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js +81 -11
- package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js.map +1 -1
- package/dist/LinearMafDisplay/components/Sidebar/Tree.js +30 -9
- package/dist/LinearMafDisplay/components/Sidebar/Tree.js.map +1 -1
- package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.d.ts +0 -1
- package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.js.map +1 -1
- package/dist/LinearMafDisplay/components/useDragSelection.d.ts +25 -0
- package/dist/LinearMafDisplay/components/useDragSelection.js +103 -0
- package/dist/LinearMafDisplay/components/useDragSelection.js.map +1 -0
- package/dist/LinearMafDisplay/configSchema.d.ts +3 -30
- package/dist/LinearMafDisplay/renderSvg.js +1 -1
- package/dist/LinearMafDisplay/renderSvg.js.map +1 -1
- package/dist/LinearMafDisplay/stateModel.d.ts +1090 -102
- package/dist/LinearMafDisplay/stateModel.js +156 -17
- package/dist/LinearMafDisplay/stateModel.js.map +1 -1
- package/dist/LinearMafDisplay/types.d.ts +2 -2
- package/dist/LinearMafDisplay/util.d.ts +6 -0
- package/dist/LinearMafDisplay/util.js +28 -6
- package/dist/LinearMafDisplay/util.js.map +1 -1
- package/dist/LinearMafRenderer/LinearMafRenderer.d.ts +43 -10
- package/dist/LinearMafRenderer/LinearMafRenderer.js +1 -1
- package/dist/LinearMafRenderer/LinearMafRenderer.js.map +1 -1
- package/dist/LinearMafRenderer/components/LinearMafRendering.d.ts +14 -5
- package/dist/LinearMafRenderer/components/LinearMafRendering.js +40 -20
- package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
- package/dist/LinearMafRenderer/configSchema.d.ts +1 -6
- package/dist/LinearMafRenderer/configSchema.js +1 -6
- package/dist/LinearMafRenderer/configSchema.js.map +1 -1
- package/dist/LinearMafRenderer/makeImageData.js +6 -7
- package/dist/LinearMafRenderer/makeImageData.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/features.d.ts +0 -1
- package/dist/LinearMafRenderer/rendering/features.js +1 -14
- package/dist/LinearMafRenderer/rendering/features.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/insertions.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/insertions.js +10 -8
- package/dist/LinearMafRenderer/rendering/insertions.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/matches.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/matches.js +3 -15
- package/dist/LinearMafRenderer/rendering/matches.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/mismatches.d.ts +1 -1
- package/dist/LinearMafRenderer/rendering/mismatches.js +3 -3
- package/dist/LinearMafRenderer/rendering/spatialIndex.js +8 -2
- package/dist/LinearMafRenderer/rendering/spatialIndex.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/text.js +1 -3
- package/dist/LinearMafRenderer/rendering/text.js.map +1 -1
- package/dist/LinearMafRenderer/rendering/types.d.ts +6 -5
- package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js +1 -1
- package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js.map +1 -1
- package/dist/MafAddTrackWorkflow/index.js +1 -1
- package/dist/MafAddTrackWorkflow/index.js.map +1 -1
- package/dist/MafGetSequences/MafGetSequences.d.ts +1 -0
- package/dist/MafGetSequences/MafGetSequences.js +2 -1
- package/dist/MafGetSequences/MafGetSequences.js.map +1 -1
- package/dist/MafSequenceWidget/LabelsCanvas.d.ts +8 -0
- package/dist/MafSequenceWidget/LabelsCanvas.js +37 -0
- package/dist/MafSequenceWidget/LabelsCanvas.js.map +1 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlight.d.ts +6 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlight.js +52 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlight.js.map +1 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.d.ts +2 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.js +12 -0
- package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.js.map +1 -0
- package/dist/MafSequenceWidget/MafSequenceWidget.d.ts +6 -0
- package/dist/MafSequenceWidget/MafSequenceWidget.js +189 -0
- package/dist/MafSequenceWidget/MafSequenceWidget.js.map +1 -0
- package/dist/MafSequenceWidget/SequenceCanvas.d.ts +12 -0
- package/dist/MafSequenceWidget/SequenceCanvas.js +86 -0
- package/dist/MafSequenceWidget/SequenceCanvas.js.map +1 -0
- package/dist/MafSequenceWidget/SequenceDisplay.d.ts +12 -0
- package/dist/MafSequenceWidget/SequenceDisplay.js +117 -0
- package/dist/MafSequenceWidget/SequenceDisplay.js.map +1 -0
- package/dist/MafSequenceWidget/SequenceTooltip.d.ts +11 -0
- package/dist/MafSequenceWidget/SequenceTooltip.js +39 -0
- package/dist/MafSequenceWidget/SequenceTooltip.js.map +1 -0
- package/dist/MafSequenceWidget/baseColors.d.ts +3 -0
- package/dist/MafSequenceWidget/baseColors.js +64 -0
- package/dist/MafSequenceWidget/baseColors.js.map +1 -0
- package/dist/MafSequenceWidget/colToGenomePos.d.ts +13 -0
- package/dist/MafSequenceWidget/colToGenomePos.js +32 -0
- package/dist/MafSequenceWidget/colToGenomePos.js.map +1 -0
- package/dist/MafSequenceWidget/colToGenomePos.test.d.ts +1 -0
- package/dist/MafSequenceWidget/colToGenomePos.test.js +136 -0
- package/dist/MafSequenceWidget/colToGenomePos.test.js.map +1 -0
- package/dist/MafSequenceWidget/configSchema.d.ts +1 -0
- package/dist/MafSequenceWidget/configSchema.js +3 -0
- package/dist/MafSequenceWidget/configSchema.js.map +1 -0
- package/dist/MafSequenceWidget/constants.d.ts +4 -0
- package/dist/MafSequenceWidget/constants.js +5 -0
- package/dist/MafSequenceWidget/constants.js.map +1 -0
- package/dist/MafSequenceWidget/index.d.ts +2 -0
- package/dist/MafSequenceWidget/index.js +16 -0
- package/dist/MafSequenceWidget/index.js.map +1 -0
- package/dist/MafSequenceWidget/stateModelFactory.d.ts +67 -0
- package/dist/MafSequenceWidget/stateModelFactory.js +21 -0
- package/dist/MafSequenceWidget/stateModelFactory.js.map +1 -0
- package/dist/MafTabixAdapter/MafTabixAdapter.js +4 -35
- package/dist/MafTabixAdapter/MafTabixAdapter.js.map +1 -1
- package/dist/MafTabixAdapter/configSchema.d.ts +4 -4
- package/dist/MafTrack/configSchema.d.ts +16 -11
- package/dist/index.js +2 -0
- package/dist/index.js.map +1 -1
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +12 -24
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +4 -4
- package/dist/util/clipboard.d.ts +2 -0
- package/dist/util/clipboard.js +28 -0
- package/dist/util/clipboard.js.map +1 -0
- package/dist/util/fastaUtils.d.ts +2 -1
- package/dist/util/fastaUtils.js +93 -50
- package/dist/util/fastaUtils.js.map +1 -1
- package/dist/util/fastaUtils.test.js +190 -0
- package/dist/util/fastaUtils.test.js.map +1 -1
- package/dist/util/parseAssemblyName.d.ts +32 -0
- package/dist/util/parseAssemblyName.js +87 -0
- package/dist/util/parseAssemblyName.js.map +1 -0
- package/dist/util/parseAssemblyName.test.d.ts +1 -0
- package/dist/util/parseAssemblyName.test.js +269 -0
- package/dist/util/parseAssemblyName.test.js.map +1 -0
- package/package.json +12 -12
- package/src/BigMafAdapter/BigMafAdapter.ts +5 -5
- package/src/LinearMafDisplay/components/LinearMafDisplayComponent.tsx +63 -145
- package/src/LinearMafDisplay/components/MAFTooltip.tsx +0 -3
- package/src/LinearMafDisplay/components/MsaHighlightOverlay.tsx +62 -0
- package/src/LinearMafDisplay/components/Sidebar/ColorLegend.tsx +2 -6
- package/src/LinearMafDisplay/components/Sidebar/RectBg.tsx +8 -3
- package/src/LinearMafDisplay/components/Sidebar/SvgWrapper.tsx +117 -15
- package/src/LinearMafDisplay/components/Sidebar/Tree.tsx +53 -8
- package/src/LinearMafDisplay/components/Sidebar/YScaleBars.tsx +0 -1
- package/src/LinearMafDisplay/components/useDragSelection.ts +159 -0
- package/src/LinearMafDisplay/renderSvg.tsx +1 -1
- package/src/LinearMafDisplay/stateModel.ts +215 -20
- package/src/LinearMafDisplay/types.ts +2 -2
- package/src/LinearMafDisplay/util.ts +35 -7
- package/src/LinearMafRenderer/LinearMafRenderer.ts +3 -5
- package/src/LinearMafRenderer/components/LinearMafRendering.tsx +67 -33
- package/src/LinearMafRenderer/configSchema.ts +1 -6
- package/src/LinearMafRenderer/makeImageData.ts +5 -14
- package/src/LinearMafRenderer/rendering/features.ts +2 -36
- package/src/LinearMafRenderer/rendering/insertions.ts +13 -8
- package/src/LinearMafRenderer/rendering/matches.ts +2 -27
- package/src/LinearMafRenderer/rendering/mismatches.ts +3 -3
- package/src/LinearMafRenderer/rendering/spatialIndex.ts +9 -2
- package/src/LinearMafRenderer/rendering/text.ts +1 -2
- package/src/LinearMafRenderer/rendering/types.ts +8 -5
- package/src/MafAddTrackWorkflow/AddTrackWorkflow.tsx +1 -1
- package/src/MafAddTrackWorkflow/index.ts +1 -1
- package/src/MafGetSequences/MafGetSequences.ts +10 -2
- package/src/MafSequenceWidget/LabelsCanvas.tsx +58 -0
- package/src/MafSequenceWidget/MafSequenceHoverHighlight.tsx +83 -0
- package/src/MafSequenceWidget/MafSequenceHoverHighlightExtension.tsx +24 -0
- package/src/MafSequenceWidget/MafSequenceWidget.tsx +294 -0
- package/src/MafSequenceWidget/SequenceCanvas.tsx +136 -0
- package/src/MafSequenceWidget/SequenceDisplay.tsx +188 -0
- package/src/MafSequenceWidget/SequenceTooltip.tsx +70 -0
- package/src/MafSequenceWidget/baseColors.ts +76 -0
- package/src/MafSequenceWidget/colToGenomePos.test.ts +166 -0
- package/src/MafSequenceWidget/colToGenomePos.ts +40 -0
- package/src/MafSequenceWidget/configSchema.ts +3 -0
- package/src/MafSequenceWidget/constants.ts +4 -0
- package/src/MafSequenceWidget/index.ts +24 -0
- package/src/MafSequenceWidget/stateModelFactory.ts +43 -0
- package/src/MafTabixAdapter/MafTabixAdapter.ts +12 -51
- package/src/index.ts +2 -0
- package/src/util/__snapshots__/fastaUtils.test.ts.snap +35 -0
- package/src/util/clipboard.ts +35 -0
- package/src/util/fastaUtils.test.ts +199 -0
- package/src/util/fastaUtils.ts +118 -51
- package/src/util/parseAssemblyName.test.ts +350 -0
- package/src/util/parseAssemblyName.ts +106 -0
- package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.d.ts +0 -11
- package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.js +0 -97
- package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.js.map +0 -1
- package/dist/LinearMafDisplay/components/util.d.ts +0 -1
- package/dist/LinearMafDisplay/components/util.js +0 -8
- package/dist/LinearMafDisplay/components/util.js.map +0 -1
- package/dist/LinearMafRenderer/components/util.d.ts +0 -1
- package/dist/LinearMafRenderer/components/util.js +0 -13
- package/dist/LinearMafRenderer/components/util.js.map +0 -1
- package/dist/util/fetchSequences.d.ts +0 -18
- package/dist/util/fetchSequences.js +0 -39
- package/dist/util/fetchSequences.js.map +0 -1
- package/dist/util/useSequences.d.ts +0 -21
- package/dist/util/useSequences.js +0 -64
- package/dist/util/useSequences.js.map +0 -1
- package/src/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.tsx +0 -175
- package/src/LinearMafDisplay/components/util.ts +0 -7
- package/src/LinearMafRenderer/components/util.ts +0 -13
- package/src/util/fetchSequences.ts +0 -57
- package/src/util/useSequences.ts +0 -90
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interface DragSelectionState {
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isDragging: boolean;
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dragStartX: number | undefined;
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dragEndX: number | undefined;
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showSelectionBox: boolean;
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mouseX: number | undefined;
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mouseY: number | undefined;
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}
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interface DragSelectionHandlers {
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handleMouseDown: (event: React.MouseEvent) => void;
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handleMouseMove: (event: React.MouseEvent) => void;
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handleMouseUp: (event: React.MouseEvent) => void;
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handleMouseLeave: () => void;
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clearSelectionBox: () => void;
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}
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interface ContextCoord {
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coord: [number, number];
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dragStartX: number;
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dragEndX: number;
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}
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export declare function useDragSelection(ref: React.RefObject<HTMLDivElement | null>): DragSelectionState & DragSelectionHandlers & {
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contextCoord: ContextCoord | undefined;
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setContextCoord: (coord: ContextCoord | undefined) => void;
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};
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export {};
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import { useCallback, useEffect, useState } from 'react';
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const MIN_DRAG_DISTANCE = 3;
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export function useDragSelection(ref) {
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const [isDragging, setIsDragging] = useState(false);
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const [dragStartX, setDragStartX] = useState();
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const [dragEndX, setDragEndX] = useState();
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const [showSelectionBox, setShowSelectionBox] = useState(false);
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const [mouseX, setMouseX] = useState();
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const [mouseY, setMouseY] = useState();
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const [contextCoord, setContextCoord] = useState();
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const clearSelectionBox = useCallback(() => {
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setShowSelectionBox(false);
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setDragStartX(undefined);
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setDragEndX(undefined);
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}, []);
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const handleMouseDown = useCallback((event) => {
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if (event.shiftKey) {
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return;
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}
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const rect = ref.current?.getBoundingClientRect();
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const left = rect?.left || 0;
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const clientX = event.clientX - left;
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setShowSelectionBox(false);
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setIsDragging(true);
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setDragStartX(clientX);
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setDragEndX(clientX);
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event.stopPropagation();
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}, [ref]);
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const handleMouseMove = useCallback((event) => {
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const rect = ref.current?.getBoundingClientRect();
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const top = rect?.top || 0;
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const left = rect?.left || 0;
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const clientX = event.clientX - left;
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const clientY = event.clientY - top;
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setMouseY(clientY);
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setMouseX(clientX);
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if (isDragging) {
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setDragEndX(clientX);
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}
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}, [ref, isDragging]);
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const handleMouseUp = useCallback((event) => {
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if (isDragging && dragStartX !== undefined && dragEndX !== undefined) {
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const dragDistanceX = Math.abs(dragEndX - dragStartX);
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if (dragDistanceX > MIN_DRAG_DISTANCE) {
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setContextCoord({
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coord: [event.clientX, event.clientY],
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dragEndX: event.clientX,
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dragStartX: dragStartX,
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});
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setShowSelectionBox(true);
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}
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else {
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clearSelectionBox();
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}
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}
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setIsDragging(false);
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}, [isDragging, dragStartX, dragEndX, clearSelectionBox]);
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const handleMouseLeave = useCallback(() => {
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setMouseY(undefined);
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setMouseX(undefined);
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setIsDragging(false);
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}, []);
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useEffect(() => {
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const handleKeyDown = (event) => {
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if (event.key === 'Escape' && showSelectionBox) {
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clearSelectionBox();
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}
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};
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const handleClickOutside = (event) => {
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if (ref.current &&
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!ref.current.contains(event.target) &&
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showSelectionBox) {
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clearSelectionBox();
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}
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};
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document.addEventListener('keydown', handleKeyDown);
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document.addEventListener('click', handleClickOutside);
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return () => {
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document.removeEventListener('keydown', handleKeyDown);
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document.removeEventListener('click', handleClickOutside);
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};
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}, [ref, showSelectionBox, clearSelectionBox]);
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const dragDistance = dragStartX !== undefined && dragEndX !== undefined
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? Math.abs(dragEndX - dragStartX)
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: 0;
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const hasDraggedEnough = dragDistance > MIN_DRAG_DISTANCE;
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return {
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isDragging: isDragging && hasDraggedEnough,
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dragStartX,
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dragEndX,
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showSelectionBox,
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mouseX,
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mouseY,
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contextCoord,
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setContextCoord,
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handleMouseDown,
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handleMouseMove,
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handleMouseUp,
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handleMouseLeave,
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clearSelectionBox,
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};
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}
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//# sourceMappingURL=useDragSelection.js.map
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{"version":3,"file":"useDragSelection.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/useDragSelection.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAExD,MAAM,iBAAiB,GAAG,CAAC,CAAA;AAyB3B,MAAM,UAAU,gBAAgB,CAC9B,GAA2C;IAM3C,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAU,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAClD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAEhE,MAAM,iBAAiB,GAAG,WAAW,CAAC,GAAG,EAAE;QACzC,mBAAmB,CAAC,KAAK,CAAC,CAAA;QAC1B,aAAa,CAAC,SAAS,CAAC,CAAA;QACxB,WAAW,CAAC,SAAS,CAAC,CAAA;IACxB,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,eAAe,GAAG,WAAW,CACjC,CAAC,KAAuB,EAAE,EAAE;QAC1B,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;YACnB,OAAM;QACR,CAAC;QACD,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;QACjD,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;QAC5B,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAA;QAEpC,mBAAmB,CAAC,KAAK,CAAC,CAAA;QAC1B,aAAa,CAAC,IAAI,CAAC,CAAA;QACnB,aAAa,CAAC,OAAO,CAAC,CAAA;QACtB,WAAW,CAAC,OAAO,CAAC,CAAA;QACpB,KAAK,CAAC,eAAe,EAAE,CAAA;IACzB,CAAC,EACD,CAAC,GAAG,CAAC,CACN,CAAA;IAED,MAAM,eAAe,GAAG,WAAW,CACjC,CAAC,KAAuB,EAAE,EAAE;QAC1B,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;QACjD,MAAM,GAAG,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC,CAAA;QAC1B,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;QAC5B,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAA;QACpC,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,CAAA;QAEnC,SAAS,CAAC,OAAO,CAAC,CAAA;QAClB,SAAS,CAAC,OAAO,CAAC,CAAA;QAElB,IAAI,UAAU,EAAE,CAAC;YACf,WAAW,CAAC,OAAO,CAAC,CAAA;QACtB,CAAC;IACH,CAAC,EACD,CAAC,GAAG,EAAE,UAAU,CAAC,CAClB,CAAA;IAED,MAAM,aAAa,GAAG,WAAW,CAC/B,CAAC,KAAuB,EAAE,EAAE;QAC1B,IAAI,UAAU,IAAI,UAAU,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;YACrE,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,UAAU,CAAC,CAAA;YAErD,IAAI,aAAa,GAAG,iBAAiB,EAAE,CAAC;gBACtC,eAAe,CAAC;oBACd,KAAK,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC;oBACrC,QAAQ,EAAE,KAAK,CAAC,OAAO;oBACvB,UAAU,EAAE,UAAU;iBACvB,CAAC,CAAA;gBACF,mBAAmB,CAAC,IAAI,CAAC,CAAA;YAC3B,CAAC;iBAAM,CAAC;gBACN,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC;QACD,aAAa,CAAC,KAAK,CAAC,CAAA;IACtB,CAAC,EACD,CAAC,UAAU,EAAE,UAAU,EAAE,QAAQ,EAAE,iBAAiB,CAAC,CACtD,CAAA;IAED,MAAM,gBAAgB,GAAG,WAAW,CAAC,GAAG,EAAE;QACxC,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,aAAa,CAAC,KAAK,CAAC,CAAA;IACtB,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,aAAa,GAAG,CAAC,KAAoB,EAAE,EAAE;YAC7C,IAAI,KAAK,CAAC,GAAG,KAAK,QAAQ,IAAI,gBAAgB,EAAE,CAAC;gBAC/C,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC,CAAA;QAED,MAAM,kBAAkB,GAAG,CAAC,KAAiB,EAAE,EAAE;YAC/C,IACE,GAAG,CAAC,OAAO;gBACX,CAAC,GAAG,CAAC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAc,CAAC;gBAC3C,gBAAgB,EAChB,CAAC;gBACD,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC,CAAA;QAED,QAAQ,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;QACnD,QAAQ,CAAC,gBAAgB,CAAC,OAAO,EAAE,kBAAkB,CAAC,CAAA;QAEtD,OAAO,GAAG,EAAE;YACV,QAAQ,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;YACtD,QAAQ,CAAC,mBAAmB,CAAC,OAAO,EAAE,kBAAkB,CAAC,CAAA;QAC3D,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,GAAG,EAAE,gBAAgB,EAAE,iBAAiB,CAAC,CAAC,CAAA;IAE9C,MAAM,YAAY,GAChB,UAAU,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS;QAChD,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,UAAU,CAAC;QACjC,CAAC,CAAC,CAAC,CAAA;IACP,MAAM,gBAAgB,GAAG,YAAY,GAAG,iBAAiB,CAAA;IAEzD,OAAO;QACL,UAAU,EAAE,UAAU,IAAI,gBAAgB;QAC1C,UAAU;QACV,QAAQ;QACR,gBAAgB;QAChB,MAAM;QACN,MAAM;QACN,YAAY;QACZ,eAAe;QACf,eAAe;QACf,eAAe;QACf,aAAa;QACb,gBAAgB;QAChB,iBAAiB;KAClB,CAAA;AACH,CAAC"}
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@@ -1,34 +1,7 @@
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1
1
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import PluginManager from '@jbrowse/core/PluginManager';
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2
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-
export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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2
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+
export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaType<{
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/**
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* #slot
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*/
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-
renderer: import("mobx-state-tree").IAnyModelType;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<
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-
maxFeatureScreenDensity: {
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type: string;
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description: string;
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defaultValue: number;
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};
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fetchSizeLimit: {
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type: string;
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defaultValue: number;
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description: string;
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};
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height: {
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type: string;
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defaultValue: number;
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description: string;
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};
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mouseover: {
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type: string;
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description: string;
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-
defaultValue: string;
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-
contextVariable: string[];
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};
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-
jexlFilters: {
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type: string;
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-
description: string;
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defaultValue: never[];
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-
};
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34
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-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
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6
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+
renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
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7
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+
}, import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaOptions<any, undefined>>;
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@@ -12,6 +12,6 @@ export async function renderSvg(self, opts, superRenderSvg) {
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12
12
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React.createElement("g", { clipPath: `url(#${clipid})` },
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13
13
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React.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
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14
14
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React.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
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15
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-
React.createElement(YScaleBars, { model: self,
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15
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+
React.createElement(YScaleBars, { model: self, exportSVG: true })))));
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16
16
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}
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17
17
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//# sourceMappingURL=renderSvg.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/renderSvg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,OAAO,UAAU,MAAM,iCAAiC,CAAA;AAQxD,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,IAA2B,EAC3B,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IAC3B,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;IAC5E,MAAM,MAAM,GAAG,WAAW,EAAE,EAAE,CAAA;IAC9B,OAAO,CACL;QACE;YACE,kCAAU,EAAE,EAAE,MAAM;gBAClB,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CACzC,CACN;QACP,2BAAG,QAAQ,EAAE,QAAQ,MAAM,GAAG;YAC5B,2BAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;YAC/C,2BAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;gBAClD,oBAAC,UAAU,IAAC,KAAK,EAAE,IAAI,EAAE,
|
|
1
|
+
{"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/renderSvg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,OAAO,UAAU,MAAM,iCAAiC,CAAA;AAQxD,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,IAA2B,EAC3B,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IAC3B,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;IAC5E,MAAM,MAAM,GAAG,WAAW,EAAE,EAAE,CAAA;IAC9B,OAAO,CACL;QACE;YACE,kCAAU,EAAE,EAAE,MAAM;gBAClB,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CACzC,CACN;QACP,2BAAG,QAAQ,EAAE,QAAQ,MAAM,GAAG;YAC5B,2BAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;YAC/C,2BAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;gBAClD,oBAAC,UAAU,IAAC,KAAK,EAAE,IAAI,EAAE,SAAS,SAAG,CACnC,CACF,CACH,CACJ,CAAA;AACH,CAAC"}
|