jbrowse-plugin-mafviewer 1.4.3 → 1.4.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (204) hide show
  1. package/README.md +1 -1
  2. package/dist/BigMafAdapter/BigMafAdapter.js +4 -5
  3. package/dist/BigMafAdapter/BigMafAdapter.js.map +1 -1
  4. package/dist/BigMafAdapter/configSchema.d.ts +2 -2
  5. package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js +39 -109
  6. package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js.map +1 -1
  7. package/dist/LinearMafDisplay/components/MAFTooltip.d.ts +0 -3
  8. package/dist/LinearMafDisplay/components/MAFTooltip.js.map +1 -1
  9. package/dist/LinearMafDisplay/components/MsaHighlightOverlay.d.ts +9 -0
  10. package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js +34 -0
  11. package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js.map +1 -0
  12. package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js +2 -2
  13. package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js.map +1 -1
  14. package/dist/LinearMafDisplay/components/Sidebar/RectBg.d.ts +1 -1
  15. package/dist/LinearMafDisplay/components/Sidebar/RectBg.js +2 -3
  16. package/dist/LinearMafDisplay/components/Sidebar/RectBg.js.map +1 -1
  17. package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js +81 -11
  18. package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js.map +1 -1
  19. package/dist/LinearMafDisplay/components/Sidebar/Tree.js +30 -9
  20. package/dist/LinearMafDisplay/components/Sidebar/Tree.js.map +1 -1
  21. package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.d.ts +0 -1
  22. package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.js.map +1 -1
  23. package/dist/LinearMafDisplay/components/useDragSelection.d.ts +25 -0
  24. package/dist/LinearMafDisplay/components/useDragSelection.js +103 -0
  25. package/dist/LinearMafDisplay/components/useDragSelection.js.map +1 -0
  26. package/dist/LinearMafDisplay/configSchema.d.ts +3 -30
  27. package/dist/LinearMafDisplay/renderSvg.js +1 -1
  28. package/dist/LinearMafDisplay/renderSvg.js.map +1 -1
  29. package/dist/LinearMafDisplay/stateModel.d.ts +1090 -102
  30. package/dist/LinearMafDisplay/stateModel.js +156 -17
  31. package/dist/LinearMafDisplay/stateModel.js.map +1 -1
  32. package/dist/LinearMafDisplay/types.d.ts +2 -2
  33. package/dist/LinearMafDisplay/util.d.ts +6 -0
  34. package/dist/LinearMafDisplay/util.js +28 -6
  35. package/dist/LinearMafDisplay/util.js.map +1 -1
  36. package/dist/LinearMafRenderer/LinearMafRenderer.d.ts +43 -10
  37. package/dist/LinearMafRenderer/LinearMafRenderer.js +1 -1
  38. package/dist/LinearMafRenderer/LinearMafRenderer.js.map +1 -1
  39. package/dist/LinearMafRenderer/components/LinearMafRendering.d.ts +14 -5
  40. package/dist/LinearMafRenderer/components/LinearMafRendering.js +40 -20
  41. package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
  42. package/dist/LinearMafRenderer/configSchema.d.ts +1 -6
  43. package/dist/LinearMafRenderer/configSchema.js +1 -6
  44. package/dist/LinearMafRenderer/configSchema.js.map +1 -1
  45. package/dist/LinearMafRenderer/makeImageData.js +6 -7
  46. package/dist/LinearMafRenderer/makeImageData.js.map +1 -1
  47. package/dist/LinearMafRenderer/rendering/features.d.ts +0 -1
  48. package/dist/LinearMafRenderer/rendering/features.js +1 -14
  49. package/dist/LinearMafRenderer/rendering/features.js.map +1 -1
  50. package/dist/LinearMafRenderer/rendering/insertions.d.ts +1 -1
  51. package/dist/LinearMafRenderer/rendering/insertions.js +10 -8
  52. package/dist/LinearMafRenderer/rendering/insertions.js.map +1 -1
  53. package/dist/LinearMafRenderer/rendering/matches.d.ts +1 -1
  54. package/dist/LinearMafRenderer/rendering/matches.js +3 -15
  55. package/dist/LinearMafRenderer/rendering/matches.js.map +1 -1
  56. package/dist/LinearMafRenderer/rendering/mismatches.d.ts +1 -1
  57. package/dist/LinearMafRenderer/rendering/mismatches.js +3 -3
  58. package/dist/LinearMafRenderer/rendering/spatialIndex.js +8 -2
  59. package/dist/LinearMafRenderer/rendering/spatialIndex.js.map +1 -1
  60. package/dist/LinearMafRenderer/rendering/text.js +1 -3
  61. package/dist/LinearMafRenderer/rendering/text.js.map +1 -1
  62. package/dist/LinearMafRenderer/rendering/types.d.ts +6 -5
  63. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js +1 -1
  64. package/dist/MafAddTrackWorkflow/AddTrackWorkflow.js.map +1 -1
  65. package/dist/MafAddTrackWorkflow/index.js +1 -1
  66. package/dist/MafAddTrackWorkflow/index.js.map +1 -1
  67. package/dist/MafGetSequences/MafGetSequences.d.ts +1 -0
  68. package/dist/MafGetSequences/MafGetSequences.js +2 -1
  69. package/dist/MafGetSequences/MafGetSequences.js.map +1 -1
  70. package/dist/MafSequenceWidget/LabelsCanvas.d.ts +8 -0
  71. package/dist/MafSequenceWidget/LabelsCanvas.js +37 -0
  72. package/dist/MafSequenceWidget/LabelsCanvas.js.map +1 -0
  73. package/dist/MafSequenceWidget/MafSequenceHoverHighlight.d.ts +6 -0
  74. package/dist/MafSequenceWidget/MafSequenceHoverHighlight.js +52 -0
  75. package/dist/MafSequenceWidget/MafSequenceHoverHighlight.js.map +1 -0
  76. package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.d.ts +2 -0
  77. package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.js +12 -0
  78. package/dist/MafSequenceWidget/MafSequenceHoverHighlightExtension.js.map +1 -0
  79. package/dist/MafSequenceWidget/MafSequenceWidget.d.ts +6 -0
  80. package/dist/MafSequenceWidget/MafSequenceWidget.js +189 -0
  81. package/dist/MafSequenceWidget/MafSequenceWidget.js.map +1 -0
  82. package/dist/MafSequenceWidget/SequenceCanvas.d.ts +12 -0
  83. package/dist/MafSequenceWidget/SequenceCanvas.js +86 -0
  84. package/dist/MafSequenceWidget/SequenceCanvas.js.map +1 -0
  85. package/dist/MafSequenceWidget/SequenceDisplay.d.ts +12 -0
  86. package/dist/MafSequenceWidget/SequenceDisplay.js +117 -0
  87. package/dist/MafSequenceWidget/SequenceDisplay.js.map +1 -0
  88. package/dist/MafSequenceWidget/SequenceTooltip.d.ts +11 -0
  89. package/dist/MafSequenceWidget/SequenceTooltip.js +39 -0
  90. package/dist/MafSequenceWidget/SequenceTooltip.js.map +1 -0
  91. package/dist/MafSequenceWidget/baseColors.d.ts +3 -0
  92. package/dist/MafSequenceWidget/baseColors.js +64 -0
  93. package/dist/MafSequenceWidget/baseColors.js.map +1 -0
  94. package/dist/MafSequenceWidget/colToGenomePos.d.ts +13 -0
  95. package/dist/MafSequenceWidget/colToGenomePos.js +32 -0
  96. package/dist/MafSequenceWidget/colToGenomePos.js.map +1 -0
  97. package/dist/MafSequenceWidget/colToGenomePos.test.d.ts +1 -0
  98. package/dist/MafSequenceWidget/colToGenomePos.test.js +136 -0
  99. package/dist/MafSequenceWidget/colToGenomePos.test.js.map +1 -0
  100. package/dist/MafSequenceWidget/configSchema.d.ts +1 -0
  101. package/dist/MafSequenceWidget/configSchema.js +3 -0
  102. package/dist/MafSequenceWidget/configSchema.js.map +1 -0
  103. package/dist/MafSequenceWidget/constants.d.ts +4 -0
  104. package/dist/MafSequenceWidget/constants.js +5 -0
  105. package/dist/MafSequenceWidget/constants.js.map +1 -0
  106. package/dist/MafSequenceWidget/index.d.ts +2 -0
  107. package/dist/MafSequenceWidget/index.js +16 -0
  108. package/dist/MafSequenceWidget/index.js.map +1 -0
  109. package/dist/MafSequenceWidget/stateModelFactory.d.ts +67 -0
  110. package/dist/MafSequenceWidget/stateModelFactory.js +21 -0
  111. package/dist/MafSequenceWidget/stateModelFactory.js.map +1 -0
  112. package/dist/MafTabixAdapter/MafTabixAdapter.js +4 -35
  113. package/dist/MafTabixAdapter/MafTabixAdapter.js.map +1 -1
  114. package/dist/MafTabixAdapter/configSchema.d.ts +4 -4
  115. package/dist/MafTrack/configSchema.d.ts +16 -11
  116. package/dist/index.js +2 -0
  117. package/dist/index.js.map +1 -1
  118. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +12 -24
  119. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +4 -4
  120. package/dist/util/clipboard.d.ts +2 -0
  121. package/dist/util/clipboard.js +28 -0
  122. package/dist/util/clipboard.js.map +1 -0
  123. package/dist/util/fastaUtils.d.ts +2 -1
  124. package/dist/util/fastaUtils.js +93 -50
  125. package/dist/util/fastaUtils.js.map +1 -1
  126. package/dist/util/fastaUtils.test.js +190 -0
  127. package/dist/util/fastaUtils.test.js.map +1 -1
  128. package/dist/util/parseAssemblyName.d.ts +32 -0
  129. package/dist/util/parseAssemblyName.js +87 -0
  130. package/dist/util/parseAssemblyName.js.map +1 -0
  131. package/dist/util/parseAssemblyName.test.d.ts +1 -0
  132. package/dist/util/parseAssemblyName.test.js +269 -0
  133. package/dist/util/parseAssemblyName.test.js.map +1 -0
  134. package/package.json +12 -12
  135. package/src/BigMafAdapter/BigMafAdapter.ts +5 -5
  136. package/src/LinearMafDisplay/components/LinearMafDisplayComponent.tsx +63 -145
  137. package/src/LinearMafDisplay/components/MAFTooltip.tsx +0 -3
  138. package/src/LinearMafDisplay/components/MsaHighlightOverlay.tsx +62 -0
  139. package/src/LinearMafDisplay/components/Sidebar/ColorLegend.tsx +2 -6
  140. package/src/LinearMafDisplay/components/Sidebar/RectBg.tsx +8 -3
  141. package/src/LinearMafDisplay/components/Sidebar/SvgWrapper.tsx +117 -15
  142. package/src/LinearMafDisplay/components/Sidebar/Tree.tsx +53 -8
  143. package/src/LinearMafDisplay/components/Sidebar/YScaleBars.tsx +0 -1
  144. package/src/LinearMafDisplay/components/useDragSelection.ts +159 -0
  145. package/src/LinearMafDisplay/renderSvg.tsx +1 -1
  146. package/src/LinearMafDisplay/stateModel.ts +215 -20
  147. package/src/LinearMafDisplay/types.ts +2 -2
  148. package/src/LinearMafDisplay/util.ts +35 -7
  149. package/src/LinearMafRenderer/LinearMafRenderer.ts +3 -5
  150. package/src/LinearMafRenderer/components/LinearMafRendering.tsx +67 -33
  151. package/src/LinearMafRenderer/configSchema.ts +1 -6
  152. package/src/LinearMafRenderer/makeImageData.ts +5 -14
  153. package/src/LinearMafRenderer/rendering/features.ts +2 -36
  154. package/src/LinearMafRenderer/rendering/insertions.ts +13 -8
  155. package/src/LinearMafRenderer/rendering/matches.ts +2 -27
  156. package/src/LinearMafRenderer/rendering/mismatches.ts +3 -3
  157. package/src/LinearMafRenderer/rendering/spatialIndex.ts +9 -2
  158. package/src/LinearMafRenderer/rendering/text.ts +1 -2
  159. package/src/LinearMafRenderer/rendering/types.ts +8 -5
  160. package/src/MafAddTrackWorkflow/AddTrackWorkflow.tsx +1 -1
  161. package/src/MafAddTrackWorkflow/index.ts +1 -1
  162. package/src/MafGetSequences/MafGetSequences.ts +10 -2
  163. package/src/MafSequenceWidget/LabelsCanvas.tsx +58 -0
  164. package/src/MafSequenceWidget/MafSequenceHoverHighlight.tsx +83 -0
  165. package/src/MafSequenceWidget/MafSequenceHoverHighlightExtension.tsx +24 -0
  166. package/src/MafSequenceWidget/MafSequenceWidget.tsx +294 -0
  167. package/src/MafSequenceWidget/SequenceCanvas.tsx +136 -0
  168. package/src/MafSequenceWidget/SequenceDisplay.tsx +188 -0
  169. package/src/MafSequenceWidget/SequenceTooltip.tsx +70 -0
  170. package/src/MafSequenceWidget/baseColors.ts +76 -0
  171. package/src/MafSequenceWidget/colToGenomePos.test.ts +166 -0
  172. package/src/MafSequenceWidget/colToGenomePos.ts +40 -0
  173. package/src/MafSequenceWidget/configSchema.ts +3 -0
  174. package/src/MafSequenceWidget/constants.ts +4 -0
  175. package/src/MafSequenceWidget/index.ts +24 -0
  176. package/src/MafSequenceWidget/stateModelFactory.ts +43 -0
  177. package/src/MafTabixAdapter/MafTabixAdapter.ts +12 -51
  178. package/src/index.ts +2 -0
  179. package/src/util/__snapshots__/fastaUtils.test.ts.snap +35 -0
  180. package/src/util/clipboard.ts +35 -0
  181. package/src/util/fastaUtils.test.ts +199 -0
  182. package/src/util/fastaUtils.ts +118 -51
  183. package/src/util/parseAssemblyName.test.ts +350 -0
  184. package/src/util/parseAssemblyName.ts +106 -0
  185. package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.d.ts +0 -11
  186. package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.js +0 -97
  187. package/dist/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.js.map +0 -1
  188. package/dist/LinearMafDisplay/components/util.d.ts +0 -1
  189. package/dist/LinearMafDisplay/components/util.js +0 -8
  190. package/dist/LinearMafDisplay/components/util.js.map +0 -1
  191. package/dist/LinearMafRenderer/components/util.d.ts +0 -1
  192. package/dist/LinearMafRenderer/components/util.js +0 -13
  193. package/dist/LinearMafRenderer/components/util.js.map +0 -1
  194. package/dist/util/fetchSequences.d.ts +0 -18
  195. package/dist/util/fetchSequences.js +0 -39
  196. package/dist/util/fetchSequences.js.map +0 -1
  197. package/dist/util/useSequences.d.ts +0 -21
  198. package/dist/util/useSequences.js +0 -64
  199. package/dist/util/useSequences.js.map +0 -1
  200. package/src/LinearMafDisplay/components/GetSequenceDialog/GetSequenceDialog.tsx +0 -175
  201. package/src/LinearMafDisplay/components/util.ts +0 -7
  202. package/src/LinearMafRenderer/components/util.ts +0 -13
  203. package/src/util/fetchSequences.ts +0 -57
  204. package/src/util/useSequences.ts +0 -90
@@ -0,0 +1,25 @@
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+ interface DragSelectionState {
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+ isDragging: boolean;
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+ dragStartX: number | undefined;
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+ dragEndX: number | undefined;
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+ showSelectionBox: boolean;
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+ mouseX: number | undefined;
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+ mouseY: number | undefined;
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+ }
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+ interface DragSelectionHandlers {
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+ handleMouseDown: (event: React.MouseEvent) => void;
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+ handleMouseMove: (event: React.MouseEvent) => void;
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+ handleMouseUp: (event: React.MouseEvent) => void;
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+ handleMouseLeave: () => void;
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+ clearSelectionBox: () => void;
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+ }
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+ interface ContextCoord {
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+ coord: [number, number];
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+ dragStartX: number;
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+ dragEndX: number;
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+ }
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+ export declare function useDragSelection(ref: React.RefObject<HTMLDivElement | null>): DragSelectionState & DragSelectionHandlers & {
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+ contextCoord: ContextCoord | undefined;
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+ setContextCoord: (coord: ContextCoord | undefined) => void;
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+ };
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+ export {};
@@ -0,0 +1,103 @@
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+ import { useCallback, useEffect, useState } from 'react';
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+ const MIN_DRAG_DISTANCE = 3;
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+ export function useDragSelection(ref) {
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+ const [isDragging, setIsDragging] = useState(false);
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+ const [dragStartX, setDragStartX] = useState();
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+ const [dragEndX, setDragEndX] = useState();
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+ const [showSelectionBox, setShowSelectionBox] = useState(false);
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+ const [mouseX, setMouseX] = useState();
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+ const [mouseY, setMouseY] = useState();
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+ const [contextCoord, setContextCoord] = useState();
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+ const clearSelectionBox = useCallback(() => {
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+ setShowSelectionBox(false);
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+ setDragStartX(undefined);
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+ setDragEndX(undefined);
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+ }, []);
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+ const handleMouseDown = useCallback((event) => {
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+ if (event.shiftKey) {
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+ return;
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+ }
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+ const rect = ref.current?.getBoundingClientRect();
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+ const left = rect?.left || 0;
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+ const clientX = event.clientX - left;
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+ setShowSelectionBox(false);
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+ setIsDragging(true);
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+ setDragStartX(clientX);
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+ setDragEndX(clientX);
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+ event.stopPropagation();
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+ }, [ref]);
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+ const handleMouseMove = useCallback((event) => {
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+ const rect = ref.current?.getBoundingClientRect();
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+ const top = rect?.top || 0;
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+ const left = rect?.left || 0;
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+ const clientX = event.clientX - left;
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+ const clientY = event.clientY - top;
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+ setMouseY(clientY);
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+ setMouseX(clientX);
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+ if (isDragging) {
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+ setDragEndX(clientX);
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+ }
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+ }, [ref, isDragging]);
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+ const handleMouseUp = useCallback((event) => {
42
+ if (isDragging && dragStartX !== undefined && dragEndX !== undefined) {
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+ const dragDistanceX = Math.abs(dragEndX - dragStartX);
44
+ if (dragDistanceX > MIN_DRAG_DISTANCE) {
45
+ setContextCoord({
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+ coord: [event.clientX, event.clientY],
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+ dragEndX: event.clientX,
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+ dragStartX: dragStartX,
49
+ });
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+ setShowSelectionBox(true);
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+ }
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+ else {
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+ clearSelectionBox();
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+ }
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+ }
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+ setIsDragging(false);
57
+ }, [isDragging, dragStartX, dragEndX, clearSelectionBox]);
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+ const handleMouseLeave = useCallback(() => {
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+ setMouseY(undefined);
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+ setMouseX(undefined);
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+ setIsDragging(false);
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+ }, []);
63
+ useEffect(() => {
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+ const handleKeyDown = (event) => {
65
+ if (event.key === 'Escape' && showSelectionBox) {
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+ clearSelectionBox();
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+ }
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+ };
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+ const handleClickOutside = (event) => {
70
+ if (ref.current &&
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+ !ref.current.contains(event.target) &&
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+ showSelectionBox) {
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+ clearSelectionBox();
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+ }
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+ };
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+ document.addEventListener('keydown', handleKeyDown);
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+ document.addEventListener('click', handleClickOutside);
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+ return () => {
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+ document.removeEventListener('keydown', handleKeyDown);
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+ document.removeEventListener('click', handleClickOutside);
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+ };
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+ }, [ref, showSelectionBox, clearSelectionBox]);
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+ const dragDistance = dragStartX !== undefined && dragEndX !== undefined
84
+ ? Math.abs(dragEndX - dragStartX)
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+ : 0;
86
+ const hasDraggedEnough = dragDistance > MIN_DRAG_DISTANCE;
87
+ return {
88
+ isDragging: isDragging && hasDraggedEnough,
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+ dragStartX,
90
+ dragEndX,
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+ showSelectionBox,
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+ mouseX,
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+ mouseY,
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+ contextCoord,
95
+ setContextCoord,
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+ handleMouseDown,
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+ handleMouseMove,
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+ handleMouseUp,
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+ handleMouseLeave,
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+ clearSelectionBox,
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+ };
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+ }
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+ //# sourceMappingURL=useDragSelection.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"useDragSelection.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/useDragSelection.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAExD,MAAM,iBAAiB,GAAG,CAAC,CAAA;AAyB3B,MAAM,UAAU,gBAAgB,CAC9B,GAA2C;IAM3C,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACnD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAU,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAU,CAAA;IAClD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAC/D,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAU,CAAA;IAC9C,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAEhE,MAAM,iBAAiB,GAAG,WAAW,CAAC,GAAG,EAAE;QACzC,mBAAmB,CAAC,KAAK,CAAC,CAAA;QAC1B,aAAa,CAAC,SAAS,CAAC,CAAA;QACxB,WAAW,CAAC,SAAS,CAAC,CAAA;IACxB,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,eAAe,GAAG,WAAW,CACjC,CAAC,KAAuB,EAAE,EAAE;QAC1B,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;YACnB,OAAM;QACR,CAAC;QACD,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;QACjD,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;QAC5B,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAA;QAEpC,mBAAmB,CAAC,KAAK,CAAC,CAAA;QAC1B,aAAa,CAAC,IAAI,CAAC,CAAA;QACnB,aAAa,CAAC,OAAO,CAAC,CAAA;QACtB,WAAW,CAAC,OAAO,CAAC,CAAA;QACpB,KAAK,CAAC,eAAe,EAAE,CAAA;IACzB,CAAC,EACD,CAAC,GAAG,CAAC,CACN,CAAA;IAED,MAAM,eAAe,GAAG,WAAW,CACjC,CAAC,KAAuB,EAAE,EAAE;QAC1B,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,EAAE,qBAAqB,EAAE,CAAA;QACjD,MAAM,GAAG,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC,CAAA;QAC1B,MAAM,IAAI,GAAG,IAAI,EAAE,IAAI,IAAI,CAAC,CAAA;QAC5B,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,CAAA;QACpC,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,CAAA;QAEnC,SAAS,CAAC,OAAO,CAAC,CAAA;QAClB,SAAS,CAAC,OAAO,CAAC,CAAA;QAElB,IAAI,UAAU,EAAE,CAAC;YACf,WAAW,CAAC,OAAO,CAAC,CAAA;QACtB,CAAC;IACH,CAAC,EACD,CAAC,GAAG,EAAE,UAAU,CAAC,CAClB,CAAA;IAED,MAAM,aAAa,GAAG,WAAW,CAC/B,CAAC,KAAuB,EAAE,EAAE;QAC1B,IAAI,UAAU,IAAI,UAAU,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;YACrE,MAAM,aAAa,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,UAAU,CAAC,CAAA;YAErD,IAAI,aAAa,GAAG,iBAAiB,EAAE,CAAC;gBACtC,eAAe,CAAC;oBACd,KAAK,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC;oBACrC,QAAQ,EAAE,KAAK,CAAC,OAAO;oBACvB,UAAU,EAAE,UAAU;iBACvB,CAAC,CAAA;gBACF,mBAAmB,CAAC,IAAI,CAAC,CAAA;YAC3B,CAAC;iBAAM,CAAC;gBACN,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC;QACD,aAAa,CAAC,KAAK,CAAC,CAAA;IACtB,CAAC,EACD,CAAC,UAAU,EAAE,UAAU,EAAE,QAAQ,EAAE,iBAAiB,CAAC,CACtD,CAAA;IAED,MAAM,gBAAgB,GAAG,WAAW,CAAC,GAAG,EAAE;QACxC,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,SAAS,CAAC,SAAS,CAAC,CAAA;QACpB,aAAa,CAAC,KAAK,CAAC,CAAA;IACtB,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,aAAa,GAAG,CAAC,KAAoB,EAAE,EAAE;YAC7C,IAAI,KAAK,CAAC,GAAG,KAAK,QAAQ,IAAI,gBAAgB,EAAE,CAAC;gBAC/C,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC,CAAA;QAED,MAAM,kBAAkB,GAAG,CAAC,KAAiB,EAAE,EAAE;YAC/C,IACE,GAAG,CAAC,OAAO;gBACX,CAAC,GAAG,CAAC,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAc,CAAC;gBAC3C,gBAAgB,EAChB,CAAC;gBACD,iBAAiB,EAAE,CAAA;YACrB,CAAC;QACH,CAAC,CAAA;QAED,QAAQ,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;QACnD,QAAQ,CAAC,gBAAgB,CAAC,OAAO,EAAE,kBAAkB,CAAC,CAAA;QAEtD,OAAO,GAAG,EAAE;YACV,QAAQ,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,CAAC,CAAA;YACtD,QAAQ,CAAC,mBAAmB,CAAC,OAAO,EAAE,kBAAkB,CAAC,CAAA;QAC3D,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,GAAG,EAAE,gBAAgB,EAAE,iBAAiB,CAAC,CAAC,CAAA;IAE9C,MAAM,YAAY,GAChB,UAAU,KAAK,SAAS,IAAI,QAAQ,KAAK,SAAS;QAChD,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,GAAG,UAAU,CAAC;QACjC,CAAC,CAAC,CAAC,CAAA;IACP,MAAM,gBAAgB,GAAG,YAAY,GAAG,iBAAiB,CAAA;IAEzD,OAAO;QACL,UAAU,EAAE,UAAU,IAAI,gBAAgB;QAC1C,UAAU;QACV,QAAQ;QACR,gBAAgB;QAChB,MAAM;QACN,MAAM;QACN,YAAY;QACZ,eAAe;QACf,eAAe;QACf,eAAe;QACf,aAAa;QACb,gBAAgB;QAChB,iBAAiB;KAClB,CAAA;AACH,CAAC"}
@@ -1,34 +1,7 @@
1
1
  import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
+ export default function configSchemaF(pluginManager: PluginManager): import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  /**
4
4
  * #slot
5
5
  */
6
- renderer: import("mobx-state-tree").IAnyModelType;
7
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
8
- maxFeatureScreenDensity: {
9
- type: string;
10
- description: string;
11
- defaultValue: number;
12
- };
13
- fetchSizeLimit: {
14
- type: string;
15
- defaultValue: number;
16
- description: string;
17
- };
18
- height: {
19
- type: string;
20
- defaultValue: number;
21
- description: string;
22
- };
23
- mouseover: {
24
- type: string;
25
- description: string;
26
- defaultValue: string;
27
- contextVariable: string[];
28
- };
29
- jexlFilters: {
30
- type: string;
31
- description: string;
32
- defaultValue: never[];
33
- };
34
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;
6
+ renderer: import("@jbrowse/mobx-state-tree").IAnyModelType;
7
+ }, import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaOptions<any, undefined>>;
@@ -12,6 +12,6 @@ export async function renderSvg(self, opts, superRenderSvg) {
12
12
  React.createElement("g", { clipPath: `url(#${clipid})` },
13
13
  React.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
14
14
  React.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
15
- React.createElement(YScaleBars, { model: self, orientation: "left", exportSVG: true })))));
15
+ React.createElement(YScaleBars, { model: self, exportSVG: true })))));
16
16
  }
17
17
  //# sourceMappingURL=renderSvg.js.map
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"renderSvg.js","sourceRoot":"","sources":["../../src/LinearMafDisplay/renderSvg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAEtD,OAAO,UAAU,MAAM,iCAAiC,CAAA;AAQxD,MAAM,CAAC,KAAK,UAAU,SAAS,CAC7B,IAA2B,EAC3B,IAA6B,EAC7B,cAA2E;IAE3E,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IAC3B,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAA0B,CAAA;IAC5E,MAAM,MAAM,GAAG,WAAW,EAAE,EAAE,CAAA;IAC9B,OAAO,CACL;QACE;YACE,kCAAU,EAAE,EAAE,MAAM;gBAClB,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CACzC,CACN;QACP,2BAAG,QAAQ,EAAE,QAAQ,MAAM,GAAG;YAC5B,2BAAG,EAAE,EAAC,QAAQ,IAAE,MAAM,cAAc,CAAC,IAAI,CAAC,CAAK;YAC/C,2BAAG,SAAS,EAAE,aAAa,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG;gBAClD,oBAAC,UAAU,IAAC,KAAK,EAAE,IAAI,EAAE,SAAS,SAAG,CACnC,CACF,CACH,CACJ,CAAA;AACH,CAAC"}