jbrowse-plugin-mafviewer 1.4.3 → 1.4.6

package/README.md

@@ -9,7 +9,7 @@ JBrowse 2
 
 ## Demo
 
-https://jbrowse.org/code/jb2/main/?config=%2Fdemos%2Fmaf%2Fhg38%2Fdistconfig.json&session=share-2v5qIkvufP&password=uYpiC
+https://jbrowse.org/code/jb2/main/?config=%2Fdemos%2Fmaf%2Fhg38%2Fdistconfig.json&session=share-bJXbDiWcc9&password=87GhV
 
 ## GUI usage (e.g. in JBrowse Desktop)
 

package/dist/BigMafAdapter/BigMafAdapter.js

@@ -2,10 +2,11 @@ import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter'
 import { SimpleFeature, updateStatus } from '@jbrowse/core/util';
 import { openLocation } from '@jbrowse/core/util/io';
 import { ObservableCreate } from '@jbrowse/core/util/rxjs';
-import { getSnapshot } from 'mobx-state-tree';
+import { getSnapshot } from '@jbrowse/mobx-state-tree';
 import { firstValueFrom, toArray } from 'rxjs';
 import parseNewick from '../parseNewick';
 import { normalize } from '../util';
+import { parseAssemblyAndChrSimple } from '../util/parseAssemblyName';
 export default class BigMafAdapter extends BaseFeatureDataAdapter {
     setupP;
     async setup() {
@@ -72,10 +73,8 @@ export default class BigMafAdapter extends BaseFeatureDataAdapter {
                             if (referenceSeq === undefined) {
                                 referenceSeq = sequence;
                             }
-                            // Parse organism and chromosome once
-                            const dotIndex = organismChr.indexOf('.');
-                            const org = organismChr.slice(0, Math.max(0, dotIndex));
-                            const chr = organismChr.slice(Math.max(0, dotIndex + 1));
+                            // Parse organism and chromosome
+                            const { assemblyName: org, chr } = parseAssemblyAndChrSimple(organismChr);
                             // Create alignment record directly
                             alignments[org] = {
                                 chr,

package/dist/BigMafAdapter/BigMafAdapter.js.map

@@ -1 +1 @@
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+{"version":3,"file":"BigMafAdapter.js","sourceRoot":"","sources":["../../src/BigMafAdapter/BigMafAdapter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAChF,OAAO,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAA;AAChE,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAA;AAC1D,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAA;AACtD,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9C,OAAO,WAAW,MAAM,gBAAgB,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,yBAAyB,EAAE,MAAM,2BAA2B,CAAA;AAarE,MAAM,CAAC,OAAO,OAAO,aAAc,SAAQ,sBAAsB;IACxD,MAAM,CAA+C;IAE5D,KAAK,CAAC,KAAK;QACT,IAAI,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAA;QAC/C,CAAC;QACD,OAAO;YACL,OAAO,EAAE,CACP,MAAM,IAAI,CAAC,aAAa,CAAC;gBACvB,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC;gBAC3B,IAAI,EAAE,eAAe;aACtB,CAAC,CACH,CAAC,WAAqC;SACxC,CAAA;IACH,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBAC9C,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;gBACvB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,WAAW,EAAE,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,SAAS;QACb,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;QACtC,OAAO,OAAO,CAAC,SAAS,EAAE,CAAA;IAC5B,CAAC;IAED,WAAW,CAAC,KAAa,EAAE,IAAkB;QAC3C,MAAM,EAAE,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,IAAI,IAAI,EAAE,CAAA;QAChD,2CAA2C;QAC3C,MAAM,gBAAgB,GAAG,IAAI,CAAA;QAE7B,OAAO,gBAAgB,CAAU,KAAK,EAAC,QAAQ,EAAC,EAAE;YAChD,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,EAAE,CAAA;YACtC,MAAM,QAAQ,GAAG,MAAM,YAAY,CACjC,wBAAwB,EACxB,cAAc,EACd,GAAG,EAAE,CAAC,cAAc,CAAC,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CACjE,CAAA;YACD,MAAM,YAAY,CAAC,uBAAuB,EAAE,cAAc,EAAE,GAAG,EAAE;gBAC/D,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;oBAC/B,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC,UAAU,CAAW,CAAA;oBAC7C,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;oBAE7B,iDAAiD;oBACjD,IAAI,kBAAkB,GAAG,CAAC,CAAA;oBAC1B,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;wBAC3B,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;4BAC1B,kBAAkB,EAAE,CAAA;wBACtB,CAAC;oBACH,CAAC;oBAED,uDAAuD;oBACvD,MAAM,IAAI,GAAG,IAAI,KAAK,CAAS,kBAAkB,CAAC,CAAA;oBAClD,MAAM,UAAU,GAAG,EAAoC,CAAA;oBAEvD,IAAI,aAAa,GAAG,CAAC,CAAA;oBACrB,IAAI,YAAgC,CAAA;oBAEpC,6CAA6C;oBAC7C,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;wBAC3B,IAAI,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;4BAC1B,kCAAkC;4BAClC,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAA;4BAC3C,MAAM,QAAQ,GAAG,KAAK,CAAC,CAAC,CAAE,CAAA;4BAC1B,MAAM,WAAW,GAAG,KAAK,CAAC,CAAC,CAAE,CAAA;4BAE7B,oCAAoC;4BACpC,IAAI,CAAC,aAAa,CAAC,GAAG,QAAQ,CAAA;4BAE9B,0CAA0C;4BAC1C,IAAI,YAAY,KAAK,SAAS,EAAE,CAAC;gCAC/B,YAAY,GAAG,QAAQ,CAAA;4BACzB,CAAC;4BAED,gCAAgC;4BAChC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,GAAG,EAAE,GAC9B,yBAAyB,CAAC,WAAW,CAAC,CAAA;4BAExC,mCAAmC;4BACnC,UAAU,CAAC,GAAG,CAAC,GAAG;gCAChB,GAAG;gCACH,KAAK,EAAE,CAAC,KAAK,CAAC,CAAC,CAAE;gCACjB,OAAO,EAAE,CAAC,KAAK,CAAC,CAAC,CAAE;gCACnB,MAAM,EAAE,KAAK,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;gCACjC,OAAO,EAAE,CAAC,KAAK,CAAC,CAAC,CAAE;gCACnB,GAAG,EAAE,QAAQ;6BACd,CAAA;4BAED,aAAa,EAAE,CAAA;wBACjB,CAAC;oBACH,CAAC;oBAED,QAAQ,CAAC,IAAI,CACX,IAAI,aAAa,CAAC;wBAChB,EAAE,EAAE,OAAO,CAAC,EAAE,EAAE;wBAChB,IAAI,EAAE;4BACJ,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC;4BAC3B,GAAG,EAAE,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC;4BACvB,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC;4BAC/B,GAAG,EAAE,YAAY;4BACjB,UAAU;yBACX;qBACF,CAAC,CACH,CAAA;gBACH,CAAC;YACH,CAAC,CAAC,CAAA;YACF,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC,CAAC,CAAA;IACJ,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,MAAc;QAC7B,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAA;QACxC,MAAM,EAAE,GACN,KAAK,CAAC,GAAG,KAAK,gBAAgB;YAC5B,CAAC,CAAC,SAAS;YACX,CAAC,CAAC,MAAM,YAAY,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAEhD,2EAA2E;QAC3E,OAAO;QACP,OAAO;YACL,OAAO,EAAE,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAC3C,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS;SACvC,CAAA;IACH,CAAC;IAED,aAAa,KAAU,CAAC;CACzB"}

package/dist/BigMafAdapter/configSchema.d.ts

@@ -1,4 +1,4 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+declare const configSchema: import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaType<{
     /**
      * #slot
      */
@@ -28,5 +28,5 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
             locationType: string;
         };
     };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+}, import("@jbrowse/core/esm/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default configSchema;

package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js

@@ -1,118 +1,39 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React, { useRef } from 'react';
 import { Menu } from '@jbrowse/core/ui';
-import { getContainingView, getEnv } from '@jbrowse/core/util';
+import { getContainingView, getEnv, getSession, isSessionModelWithWidgets, } from '@jbrowse/core/util';
 import { useTheme } from '@mui/material';
 import { observer } from 'mobx-react';
 import Crosshairs from './Crosshairs';
-import SequenceDialog from './GetSequenceDialog/GetSequenceDialog';
 import MAFTooltip from './MAFTooltip';
+import MsaHighlightOverlay from './MsaHighlightOverlay';
 import YScaleBars from './Sidebar/YScaleBars';
+import { useDragSelection } from './useDragSelection';
 const LinearMafDisplay = observer(function (props) {
     const { model } = props;
     const { pluginManager } = getEnv(model);
-    const { rowHeight, height, scrollTop, samples: sources } = model;
+    const { height, scrollTop, samples: sources } = model;
     const ref = useRef(null);
     const theme = useTheme();
+    const session = getSession(model);
     const LinearGenomePlugin = pluginManager.getPlugin('LinearGenomeViewPlugin');
     const { BaseLinearDisplayComponent } = LinearGenomePlugin.exports;
-    const [mouseY, setMouseY] = useState();
-    const [mouseX, setMouseX] = useState();
-    const [isDragging, setIsDragging] = useState(false);
-    const [dragStartX, setDragStartX] = useState();
-    const [dragEndX, setDragEndX] = useState();
-    const [showSelectionBox, setShowSelectionBox] = useState(false);
-    const [contextCoord, setContextCoord] = useState();
-    const [showSequenceDialog, setShowSequenceDialog] = useState(false);
-    const [selectionCoords, setSelectionCoords] = useState();
-    const { width } = getContainingView(model);
-    const handleMouseDown = (event) => {
-        const rect = ref.current?.getBoundingClientRect();
-        const left = rect?.left || 0;
-        const clientX = event.clientX - left;
-        // Clear the previous selection box when starting a new drag
-        setShowSelectionBox(false);
-        setIsDragging(true);
-        setDragStartX(clientX);
-        setDragEndX(clientX);
-        event.stopPropagation();
-    };
-    const handleMouseMove = (event) => {
-        const rect = ref.current?.getBoundingClientRect();
-        const top = rect?.top || 0;
-        const left = rect?.left || 0;
-        const clientX = event.clientX - left;
-        const clientY = event.clientY - top;
-        setMouseY(clientY);
-        setMouseX(clientX);
-        if (isDragging) {
-            setDragEndX(clientX);
-        }
-    };
-    const handleMouseUp = (event) => {
-        if (isDragging && dragStartX !== undefined && dragEndX !== undefined) {
-            // Calculate the drag distance
-            const dragDistanceX = Math.abs(dragEndX - dragStartX);
-            // Only show context menu if the drag distance is at least 2 pixels in either direction
-            if (dragDistanceX >= 2) {
-                setContextCoord({
-                    coord: [event.clientX, event.clientY],
-                    dragEndX: event.clientX,
-                    dragStartX: dragStartX,
-                });
-                // Set showSelectionBox to true to keep the selection visible
-                setShowSelectionBox(true);
-            }
-            else {
-                // For very small drags (less than 2px), don't show selection box or context menu
-                clearSelectionBox();
-            }
-        }
-        // Only set isDragging to false, but keep the coordinates
-        setIsDragging(false);
-    };
-    // Function to clear the selection box
-    const clearSelectionBox = () => {
-        setShowSelectionBox(false);
-        setDragStartX(undefined);
-        setDragEndX(undefined);
-    };
-    // Add keydown event handler to clear selection box when Escape key is pressed
-    useEffect(() => {
-        const handleKeyDown = (event) => {
-            if (event.key === 'Escape' && showSelectionBox) {
-                clearSelectionBox();
-            }
-        };
-        // Add click handler to clear selection box when clicking outside of it
-        const handleClickOutside = (event) => {
-            if (ref.current &&
-                !ref.current.contains(event.target) &&
-                showSelectionBox) {
-                clearSelectionBox();
-            }
-        };
-        document.addEventListener('keydown', handleKeyDown);
-        document.addEventListener('click', handleClickOutside);
-        return () => {
-            document.removeEventListener('keydown', handleKeyDown);
-            document.removeEventListener('click', handleClickOutside);
-        };
-    }, [showSelectionBox, clearSelectionBox]);
+    const { isDragging, dragStartX, dragEndX, showSelectionBox, mouseX, mouseY, contextCoord, setContextCoord, handleMouseDown, handleMouseMove, handleMouseUp, handleMouseLeave, clearSelectionBox, } = useDragSelection(ref);
+    const view = getContainingView(model);
+    const { width } = view;
     return (React.createElement("div", { ref: ref, onMouseDown: handleMouseDown, onMouseMove: handleMouseMove, onMouseUp: handleMouseUp, onDoubleClick: () => {
-            // Clear selection box on double click
             if (showSelectionBox) {
                 clearSelectionBox();
             }
-        }, onMouseLeave: () => {
-            setMouseY(undefined);
-            setMouseX(undefined);
-            setIsDragging(false);
-        } },
+        }, onMouseLeave: handleMouseLeave },
         React.createElement(BaseLinearDisplayComponent, { ...props }),
-        React.createElement(YScaleBars, { model: model }),
-        mouseY && mouseX && sources && !contextCoord && !showSequenceDialog ? (React.createElement("div", { style: { position: 'relative' } },
+        model.showSidebar ? React.createElement(YScaleBars, { model: model }) : null,
+        React.createElement(MsaHighlightOverlay, { model: model, view: view, height: height }),
+        mouseY !== undefined &&
+            mouseX !== undefined &&
+            sources &&
+            !contextCoord ? (React.createElement("div", { style: { position: 'relative' } },
             React.createElement(Crosshairs, { width: width, height: height, scrollTop: scrollTop, mouseX: mouseX, mouseY: mouseY }),
-            React.createElement(MAFTooltip, { model: model, mouseX: mouseX, mouseY: mouseY, origMouseX: dragStartX, rowHeight: rowHeight, sources: sources }))) : null,
+            React.createElement(MAFTooltip, { model: model, mouseX: mouseX, origMouseX: isDragging ? dragStartX : undefined }))) : null,
         (isDragging || showSelectionBox) &&
             dragStartX !== undefined &&
             dragEndX !== undefined ? (React.createElement("div", { style: {
@@ -147,22 +68,31 @@ const LinearMafDisplay = observer(function (props) {
                         if (!contextCoord) {
                             return;
                         }
-                        // Store the selection coordinates for the SequenceDialog to use
-                        setSelectionCoords({
-                            dragStartX: contextCoord.dragStartX,
-                            dragEndX: contextCoord.dragEndX,
-                        });
-                        // Show the dialog
-                        setShowSequenceDialog(true);
-                        // Close the context menu
+                        const { refName, assemblyName } = view.displayedRegions[0];
+                        const [s, e] = [
+                            Math.min(contextCoord.dragStartX, contextCoord.dragEndX),
+                            Math.max(contextCoord.dragStartX, contextCoord.dragEndX),
+                        ];
+                        if (isSessionModelWithWidgets(session)) {
+                            const widget = session.addWidget('MafSequenceWidget', 'mafSequence', {
+                                adapterConfig: model.adapterConfig,
+                                samples: model.samples,
+                                regions: [
+                                    {
+                                        refName,
+                                        start: view.pxToBp(s).coord - 1,
+                                        end: view.pxToBp(e).coord,
+                                        assemblyName,
+                                    },
+                                ],
+                                connectedViewId: view.id,
+                            });
+                            session.showWidget(widget);
+                        }
                         setContextCoord(undefined);
                     },
                 },
-            ] }),
-        showSequenceDialog ? (React.createElement(SequenceDialog, { model: model, selectionCoords: selectionCoords, onClose: () => {
-                setShowSequenceDialog(false);
-                setSelectionCoords(undefined);
-            } })) : null));
+            ] })));
 });
 export default LinearMafDisplay;
 //# sourceMappingURL=LinearMafDisplayComponent.js.map

package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js.map

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package/dist/LinearMafDisplay/components/MAFTooltip.d.ts

@@ -1,10 +1,7 @@
 import React from 'react';
 import type { LinearMafDisplayModel } from '../stateModel';
 declare const MAFTooltip: ({ model, mouseX, origMouseX, }: {
-    mouseY: number;
     mouseX: number;
-    rowHeight: number;
-    sources: Record<string, any>[];
     model: LinearMafDisplayModel;
     origMouseX?: number;
 }) => React.JSX.Element | null;

package/dist/LinearMafDisplay/components/MAFTooltip.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MAFTooltip.js","sourceRoot":"","sources":["../../../src/LinearMafDisplay/components/MAFTooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAA;AAChD,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAMhD,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EACpC,KAAK,EACL,MAAM,EACN,UAAU,GAKX;IACC,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;IAC9D,MAAM,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAC3D,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IAE9B,OAAO,WAAW,CAAC,CAAC,CAAC,CACnB,oBAAC,WAAW;QACV,oBAAC,aAAa,IACZ,IAAI,EAAE,sBAAsB,CAAC,WAA0B,EAAE,EAAE,EAAE,EAAE,CAAC,GAChE,CACU,CACf,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/LinearMafDisplay/components/MsaHighlightOverlay.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import type { LinearMafDisplayModel } from '../stateModel';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+declare const MsaHighlightOverlay: ({ model, view, height, }: {
+    model: LinearMafDisplayModel;
+    view: LinearGenomeViewModel;
+    height: number;
+}) => React.JSX.Element | null;
+export default MsaHighlightOverlay;

package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js

@@ -0,0 +1,34 @@
+import React from 'react';
+import { observer } from 'mobx-react';
+const MsaHighlightOverlay = observer(function MsaHighlightOverlay({ model, view, height, }) {
+    const { msaHighlights } = model;
+    if (msaHighlights.length === 0) {
+        return null;
+    }
+    const { offsetPx } = view;
+    const displayedRegion = view.displayedRegions[0];
+    if (!displayedRegion) {
+        return null;
+    }
+    return (React.createElement(React.Fragment, null, msaHighlights.map((highlight, idx) => {
+        // Check if highlight is on the displayed refName
+        if (highlight.refName !== displayedRegion.refName) {
+            return null;
+        }
+        const startPx = (highlight.start - displayedRegion.start) / view.bpPerPx - offsetPx;
+        const endPx = (highlight.end - displayedRegion.start) / view.bpPerPx - offsetPx;
+        const widthPx = Math.max(endPx - startPx, 2);
+        return (React.createElement("div", { key: idx, style: {
+                position: 'absolute',
+                left: startPx,
+                top: 0,
+                width: widthPx,
+                height,
+                backgroundColor: 'rgba(255, 165, 0, 0.4)',
+                border: '1px solid rgba(255, 165, 0, 0.8)',
+                pointerEvents: 'none',
+            } }));
+    })));
+});
+export default MsaHighlightOverlay;
+//# sourceMappingURL=MsaHighlightOverlay.js.map

package/dist/LinearMafDisplay/components/MsaHighlightOverlay.js.map

@@ -0,0 +1 @@
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package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js

@@ -3,10 +3,10 @@ import { observer } from 'mobx-react';
 import RectBg from './RectBg';
 import Tree from './Tree';
 const ColorLegend = observer(function ({ model, }) {
-    const { labelWidth, canDisplayLabel, totalHeight, treeWidth, samples = [], rowHeight, svgFontSize, } = model;
+    const { labelWidth, canDisplayLabel, totalHeight, treeWidth, sidebarWidth, samples = [], rowHeight, svgFontSize, } = model;
     const boxHeight = Math.min(20, rowHeight);
     return (React.createElement(React.Fragment, null,
-        React.createElement(RectBg, { y: 0, x: 0, width: labelWidth + 5 + treeWidth, height: totalHeight }),
+        React.createElement(RectBg, { y: 0, x: 0, width: sidebarWidth, height: totalHeight }),
         React.createElement(Tree, { model: model }),
         React.createElement("g", { transform: `translate(${treeWidth + 5},0)` },
             samples.map((sample, idx) => (React.createElement(RectBg, { key: `${sample.id}-${idx}`, y: idx * rowHeight, x: 0, width: labelWidth + 5, height: boxHeight, color: sample.color }))),

package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ColorLegend.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/ColorLegend.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,MAAM,MAAM,UAAU,CAAA;AAC7B,OAAO,IAAI,MAAM,QAAQ,CAAA;AAIzB,MAAM,WAAW,GAAG,QAAQ,CAAC,UAAU,EACrC,KAAK,GAGN;IACC,MAAM,EACJ,UAAU,EACV,eAAe,EACf,WAAW,EACX,SAAS,EACT,YAAY,EACZ,OAAO,GAAG,EAAE,EACZ,SAAS,EACT,WAAW,GACZ,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;IAEzC,OAAO,CACL;QACE,oBAAC,MAAM,IAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,YAAY,EAAE,MAAM,EAAE,WAAW,GAAI;QAChE,oBAAC,IAAI,IAAC,KAAK,EAAE,KAAK,GAAI;QACtB,2BAAG,SAAS,EAAE,aAAa,SAAS,GAAG,CAAC,KAAK;YAC1C,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC5B,oBAAC,MAAM,IACL,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,CAAC,EAAE,GAAG,GAAG,SAAS,EAClB,CAAC,EAAE,CAAC,EACJ,KAAK,EAAE,UAAU,GAAG,CAAC,EACrB,MAAM,EAAE,SAAS,EACjB,KAAK,EAAE,MAAM,CAAC,KAAK,GACnB,CACH,CAAC;YACD,eAAe;gBACd,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,CAC3B,8BACE,GAAG,EAAE,GAAG,MAAM,CAAC,EAAE,IAAI,GAAG,EAAE,EAC1B,gBAAgB,EAAC,QAAQ,EACzB,QAAQ,EAAE,WAAW,EACrB,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,SAAS,GAAG,CAAC,IAEjC,MAAM,CAAC,KAAK,CACR,CACR,CAAC;gBACJ,CAAC,CAAC,IAAI,CACN,CACH,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,WAAW,CAAA"}

package/dist/LinearMafDisplay/components/Sidebar/RectBg.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-declare const RectBg: (props: {
+declare const RectBg: ({ x, y, width, height, color, }: {
     x: number;
     y: number;
     width: number;

package/dist/LinearMafDisplay/components/Sidebar/RectBg.js

@@ -1,7 +1,6 @@
 import React from 'react';
-const RectBg = (props) => {
-    const { color = 'rgb(255,255,255,0.5)' } = props;
-    return React.createElement("rect", { ...props, fill: color });
+const RectBg = ({ x, y, width, height, color = 'rgb(255,255,255,0.5)', }) => {
+    return React.createElement("rect", { x: x, y: y, width: width, height: height, fill: color });
 };
 export default RectBg;
 //# sourceMappingURL=RectBg.js.map

package/dist/LinearMafDisplay/components/Sidebar/RectBg.js.map

@@ -1 +1 @@
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+{"version":3,"file":"RectBg.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/RectBg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,MAAM,MAAM,GAAG,CAAC,EACd,CAAC,EACD,CAAC,EACD,KAAK,EACL,MAAM,EACN,KAAK,GAAG,sBAAsB,GAO/B,EAAE,EAAE;IACH,OAAO,8BAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,GAAI,CAAA;AACxE,CAAC,CAAA;AAED,eAAe,MAAM,CAAA"}

package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js

@@ -1,22 +1,92 @@
-import React from 'react';
+import React, { useEffect, useRef } from 'react';
+import { ResizeHandle } from '@jbrowse/core/ui';
 import { getContainingView } from '@jbrowse/core/util';
+import { isAlive } from '@jbrowse/mobx-state-tree';
+import { autorun } from 'mobx';
 import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()({
+    resizeHandle: {
+        position: 'absolute',
+        top: 0,
+        height: '100%',
+        width: 4,
+        zIndex: 1001,
+        background: 'transparent',
+        cursor: 'col-resize',
+        '&:hover': {
+            background: 'rgba(0,0,0,0.2)',
+        },
+    },
+});
 const SvgWrapper = observer(function ({ children, model, exportSVG, }) {
+    const { classes } = useStyles();
+    const mouseoverRef = useRef(null);
+    useEffect(() => {
+        const ctx = mouseoverRef.current?.getContext('2d');
+        return ctx
+            ? autorun(() => {
+                if (isAlive(model)) {
+                    const { totalHeight, leafMap, rowHeight, highlightedRowNames, hoveredTreeNode, } = model;
+                    const { width: viewWidth } = getContainingView(model);
+                    ctx.resetTransform();
+                    ctx.clearRect(0, 0, viewWidth, totalHeight);
+                    if (highlightedRowNames) {
+                        ctx.fillStyle = 'rgba(255,165,0,0.2)';
+                        const halfRowHeight = rowHeight / 2;
+                        for (const name of highlightedRowNames) {
+                            const leaf = leafMap.get(name);
+                            if (leaf) {
+                                ctx.fillRect(0, leaf.x - halfRowHeight, viewWidth, rowHeight);
+                            }
+                        }
+                        // Draw orange dot at hovered tree node
+                        if (hoveredTreeNode) {
+                            ctx.fillStyle = 'rgba(255,165,0,0.8)';
+                            ctx.beginPath();
+                            ctx.arc(hoveredTreeNode.y, hoveredTreeNode.x, 4, 0, 2 * Math.PI);
+                            ctx.fill();
+                            ctx.strokeStyle = 'rgba(255,140,0,1)';
+                            ctx.lineWidth = 1;
+                            ctx.stroke();
+                        }
+                    }
+                }
+            })
+            : undefined;
+    }, [model]);
     if (exportSVG) {
         return React.createElement(React.Fragment, null, children);
     }
     else {
-        const { totalHeight } = model;
+        const { totalHeight, treeWidth, hierarchy } = model;
         const { width } = getContainingView(model);
-        return (React.createElement("svg", { style: {
-                position: 'absolute',
-                userSelect: 'none',
-                top: 0,
-                left: 0,
-                pointerEvents: 'none',
-                height: totalHeight,
-                width,
-            } }, children));
+        return (React.createElement(React.Fragment, null,
+            React.createElement("svg", { style: {
+                    position: 'absolute',
+                    userSelect: 'none',
+                    top: 0,
+                    left: 0,
+                    pointerEvents: 'none',
+                    height: totalHeight,
+                    width,
+                } }, children),
+            React.createElement("canvas", { ref: mouseoverRef, width: width, height: totalHeight, style: {
+                    position: 'absolute',
+                    top: 0,
+                    left: 0,
+                    width,
+                    height: totalHeight,
+                    zIndex: 1000,
+                    pointerEvents: 'none',
+                } }),
+            hierarchy ? (React.createElement("div", { onMouseDown: e => {
+                    e.stopPropagation();
+                } },
+                React.createElement(ResizeHandle, { onDrag: distance => {
+                        model.setTreeAreaWidth(Math.max(20, model.treeAreaWidth + distance));
+                        return undefined;
+                    }, className: classes.resizeHandle, style: { left: treeWidth }, vertical: true }))) : null));
     }
 });
 export default SvgWrapper;

package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js.map

@@ -1 +1 @@
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+{"version":3,"file":"SvgWrapper.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/SvgWrapper.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AACtD,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAK1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,IAAI;QACZ,UAAU,EAAE,aAAa;QACzB,MAAM,EAAE,YAAY;QACpB,SAAS,EAAE;YACT,UAAU,EAAE,iBAAiB;SAC9B;KACF;CACF,CAAC,CAAA;AAEF,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EACpC,QAAQ,EACR,KAAK,EACL,SAAS,GAKV;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAEpD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,YAAY,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QAClD,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,EACJ,WAAW,EACX,OAAO,EACP,SAAS,EACT,mBAAmB,EACnB,eAAe,GAChB,GAAG,KAAK,CAAA;oBACT,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,iBAAiB,CAC5C,KAAK,CACmB,CAAA;oBAE1B,GAAG,CAAC,cAAc,EAAE,CAAA;oBACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,WAAW,CAAC,CAAA;oBAE3C,IAAI,mBAAmB,EAAE,CAAC;wBACxB,GAAG,CAAC,SAAS,GAAG,qBAAqB,CAAA;wBACrC,MAAM,aAAa,GAAG,SAAS,GAAG,CAAC,CAAA;wBACnC,KAAK,MAAM,IAAI,IAAI,mBAAmB,EAAE,CAAC;4BACvC,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;4BAC9B,IAAI,IAAI,EAAE,CAAC;gCACT,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAE,GAAG,aAAa,EAAE,SAAS,EAAE,SAAS,CAAC,CAAA;4BAChE,CAAC;wBACH,CAAC;wBAED,uCAAuC;wBACvC,IAAI,eAAe,EAAE,CAAC;4BACpB,GAAG,CAAC,SAAS,GAAG,qBAAqB,CAAA;4BACrC,GAAG,CAAC,SAAS,EAAE,CAAA;4BACf,GAAG,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;4BAChE,GAAG,CAAC,IAAI,EAAE,CAAA;4BACV,GAAG,CAAC,WAAW,GAAG,mBAAmB,CAAA;4BACrC,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;4BACjB,GAAG,CAAC,MAAM,EAAE,CAAA;wBACd,CAAC;oBACH,CAAC;gBACH,CAAC;YACH,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,0CAAG,QAAQ,CAAI,CAAA;IACxB,CAAC;SAAM,CAAC;QACN,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;QACnD,MAAM,EAAE,KAAK,EAAE,GAAG,iBAAiB,CAAC,KAAK,CAA0B,CAAA;QACnE,OAAO,CACL;YACE,6BACE,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,UAAU,EAAE,MAAM;oBAClB,GAAG,EAAE,CAAC;oBACN,IAAI,EAAE,CAAC;oBACP,aAAa,EAAE,MAAM;oBACrB,MAAM,EAAE,WAAW;oBACnB,KAAK;iBACN,IAEA,QAAQ,CACL;YACN,gCACE,GAAG,EAAE,YAAY,EACjB,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,WAAW,EACnB,KAAK,EAAE;oBACL,QAAQ,EAAE,UAAU;oBACpB,GAAG,EAAE,CAAC;oBACN,IAAI,EAAE,CAAC;oBACP,KAAK;oBACL,MAAM,EAAE,WAAW;oBACnB,MAAM,EAAE,IAAI;oBACZ,aAAa,EAAE,MAAM;iBACtB,GACD;YACD,SAAS,CAAC,CAAC,CAAC,CACX,6BACE,WAAW,EAAE,CAAC,CAAC,EAAE;oBACf,CAAC,CAAC,eAAe,EAAE,CAAA;gBACrB,CAAC;gBAED,oBAAC,YAAY,IACX,MAAM,EAAE,QAAQ,CAAC,EAAE;wBACjB,KAAK,CAAC,gBAAgB,CACpB,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,KAAK,CAAC,aAAa,GAAG,QAAQ,CAAC,CAC7C,CAAA;wBACD,OAAO,SAAS,CAAA;oBAClB,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,YAAY,EAC/B,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,EAC1B,QAAQ,SACR,CACE,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;IACH,CAAC;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/LinearMafDisplay/components/Sidebar/Tree.js

@@ -1,11 +1,33 @@
-import React from 'react';
+import React, { useCallback, useMemo } from 'react';
 import { observer } from 'mobx-react';
+const hitboxStyle = {
+    pointerEvents: 'all',
+    cursor: 'pointer',
+    strokeWidth: 8,
+    stroke: 'transparent',
+};
 const Tree = observer(function ({ model }) {
     const { 
-    // this is needed for redrawing after zoom change, similar to react-msaview
-    // renderTreeCanvas
+    // rowHeight is needed for redrawing after zoom change
     // eslint-disable-next-line  @typescript-eslint/no-unused-vars
-    rowHeight: _rowHeight, hierarchy, showBranchLen, } = model;
+    rowHeight: _rowHeight, treeAreaWidth, hierarchy, showBranchLen, nodeDescendantNames, } = model;
+    const clearHighlight = useCallback(() => {
+        model.setHighlightedRowNames(undefined);
+    }, [model]);
+    const nodeHandlers = useMemo(() => {
+        const handlers = new Map();
+        if (hierarchy) {
+            for (const node of hierarchy.descendants()) {
+                handlers.set(node, () => {
+                    model.setHighlightedRowNames(nodeDescendantNames.get(node), {
+                        x: node.x,
+                        y: node.y,
+                    });
+                });
+            }
+        }
+        return handlers;
+    }, [model, hierarchy, nodeDescendantNames, treeAreaWidth]);
     return (React.createElement(React.Fragment, null, hierarchy
         ? [...hierarchy.links()].map(link => {
             const { source, target } = link;
@@ -15,12 +37,11 @@ const Tree = observer(function ({ model }) {
             const tx = showBranchLen ? target.len : target.y;
             // @ts-expect-error
             const sx = showBranchLen ? source.len : source.y;
-            // 1d line intersection to check if line crosses block at all, this is
-            // an optimization that allows us to skip drawing most tree links
-            // outside the block
-            return (React.createElement(React.Fragment, { key: [sy, ty, tx, sx].join('-') },
+            return (React.createElement(React.Fragment, { key: `${treeAreaWidth}-${sy}-${ty}-${tx}-${sx}` },
                 React.createElement("line", { stroke: "black", x1: sx, y1: sy, x2: sx, y2: ty }),
-                React.createElement("line", { stroke: "black", x1: sx, y1: ty, x2: tx, y2: ty })));
+                React.createElement("line", { stroke: "black", x1: sx, y1: ty, x2: tx, y2: ty }),
+                React.createElement("line", { x1: sx, y1: sy, x2: sx, y2: ty, style: hitboxStyle, onMouseEnter: nodeHandlers.get(source), onMouseLeave: clearHighlight }),
+                React.createElement("line", { x1: sx, y1: ty, x2: tx, y2: ty, style: hitboxStyle, onMouseEnter: nodeHandlers.get(target), onMouseLeave: clearHighlight })));
         })
         : null));
 });

package/dist/LinearMafDisplay/components/Sidebar/Tree.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Tree.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/Tree.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,OAAO,CAAA;AAEnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAMrC,MAAM,WAAW,GAAG;IAClB,aAAa,EAAE,KAAK;IACpB,MAAM,EAAE,SAAS;IACjB,WAAW,EAAE,CAAC;IACd,MAAM,EAAE,aAAa;CACb,CAAA;AAEV,MAAM,IAAI,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAoC;IACzE,MAAM;IACJ,sDAAsD;IACtD,8DAA8D;IAC9D,SAAS,EAAE,UAAU,EACrB,aAAa,EACb,SAAS,EACT,aAAa,EACb,mBAAmB,GACpB,GAAG,KAAK,CAAA;IAET,MAAM,cAAc,GAAG,WAAW,CAAC,GAAG,EAAE;QACtC,KAAK,CAAC,sBAAsB,CAAC,SAAS,CAAC,CAAA;IACzC,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,MAAM,YAAY,GAAG,OAAO,CAAC,GAAG,EAAE;QAChC,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAmD,CAAA;QAC3E,IAAI,SAAS,EAAE,CAAC;YACd,KAAK,MAAM,IAAI,IAAI,SAAS,CAAC,WAAW,EAAE,EAAE,CAAC;gBAC3C,QAAQ,CAAC,GAAG,CAAC,IAAI,EAAE,GAAG,EAAE;oBACtB,KAAK,CAAC,sBAAsB,CAAC,mBAAmB,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;wBAC1D,CAAC,EAAE,IAAI,CAAC,CAAE;wBACV,CAAC,EAAE,IAAI,CAAC,CAAE;qBACX,CAAC,CAAA;gBACJ,CAAC,CAAC,CAAA;YACJ,CAAC;QACH,CAAC;QACD,OAAO,QAAQ,CAAA;IACjB,CAAC,EAAE,CAAC,KAAK,EAAE,SAAS,EAAE,mBAAmB,EAAE,aAAa,CAAC,CAAC,CAAA;IAE1D,OAAO,CACL,0CACG,SAAS;QACR,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YAChC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAA;YAC/B,MAAM,EAAE,GAAG,MAAM,CAAC,CAAE,CAAA;YACpB,MAAM,EAAE,GAAG,MAAM,CAAC,CAAE,CAAA;YACpB,mBAAmB;YACnB,MAAM,EAAE,GAAG,aAAa,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAA;YAChD,mBAAmB;YACnB,MAAM,EAAE,GAAG,aAAa,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAA;YAEhD,OAAO,CACL,oBAAC,KAAK,CAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,aAAa,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE;gBAE7D,8BAAM,MAAM,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,GAAI;gBACvD,8BAAM,MAAM,EAAC,OAAO,EAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,GAAI;gBAEvD,8BACE,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,KAAK,EAAE,WAAW,EAClB,YAAY,EAAE,YAAY,CAAC,GAAG,CAAC,MAAM,CAAC,EACtC,YAAY,EAAE,cAAc,GAC5B;gBACF,8BACE,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,EACN,KAAK,EAAE,WAAW,EAClB,YAAY,EAAE,YAAY,CAAC,GAAG,CAAC,MAAM,CAAC,EACtC,YAAY,EAAE,cAAc,GAC5B,CACa,CAClB,CAAA;QACH,CAAC,CAAC;QACJ,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,IAAI,CAAA"}

package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.d.ts

@@ -2,7 +2,6 @@ import React from 'react';
 import type { LinearMafDisplayModel } from '../../stateModel';
 export declare const YScaleBars: (props: {
     model: LinearMafDisplayModel;
-    orientation?: string;
     exportSVG?: boolean;
 }) => React.JSX.Element;
 export default YScaleBars;

package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.js.map

@@ -1 +1 @@
-{"version":3,"file":"YScaleBars.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/YScaleBars.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AAIrC,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,KAI5C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,OAAO,CACL,oBAAC,UAAU,OAAK,KAAK;QACnB,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI,CAClB,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
+{"version":3,"file":"YScaleBars.js","sourceRoot":"","sources":["../../../../src/LinearMafDisplay/components/Sidebar/YScaleBars.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,WAAW,MAAM,eAAe,CAAA;AACvC,OAAO,UAAU,MAAM,cAAc,CAAA;AAIrC,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,KAG5C;IACC,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,OAAO,CACL,oBAAC,UAAU,OAAK,KAAK;QACnB,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI,CAClB,CACd,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}