jbrowse-plugin-mafviewer 1.4.2 → 1.4.5

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Files changed (100) hide show
  1. package/README.md +1 -1
  2. package/dist/LinearMafDisplay/components/InsertionSequenceDialog/InsertionSequenceDialog.d.ts +14 -0
  3. package/dist/LinearMafDisplay/components/InsertionSequenceDialog/InsertionSequenceDialog.js +69 -0
  4. package/dist/LinearMafDisplay/components/InsertionSequenceDialog/InsertionSequenceDialog.js.map +1 -0
  5. package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js +4 -4
  6. package/dist/LinearMafDisplay/components/LinearMafDisplayComponent.js.map +1 -1
  7. package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js +2 -2
  8. package/dist/LinearMafDisplay/components/Sidebar/ColorLegend.js.map +1 -1
  9. package/dist/LinearMafDisplay/components/Sidebar/RectBg.d.ts +1 -1
  10. package/dist/LinearMafDisplay/components/Sidebar/RectBg.js +2 -3
  11. package/dist/LinearMafDisplay/components/Sidebar/RectBg.js.map +1 -1
  12. package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js +81 -11
  13. package/dist/LinearMafDisplay/components/Sidebar/SvgWrapper.js.map +1 -1
  14. package/dist/LinearMafDisplay/components/Sidebar/Tree.js +30 -9
  15. package/dist/LinearMafDisplay/components/Sidebar/Tree.js.map +1 -1
  16. package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.d.ts +0 -1
  17. package/dist/LinearMafDisplay/components/Sidebar/YScaleBars.js.map +1 -1
  18. package/dist/LinearMafDisplay/renderSvg.js +1 -1
  19. package/dist/LinearMafDisplay/renderSvg.js.map +1 -1
  20. package/dist/LinearMafDisplay/stateModel.d.ts +69 -3
  21. package/dist/LinearMafDisplay/stateModel.js +96 -1
  22. package/dist/LinearMafDisplay/stateModel.js.map +1 -1
  23. package/dist/LinearMafDisplay/util.d.ts +1 -0
  24. package/dist/LinearMafDisplay/util.js +3 -2
  25. package/dist/LinearMafDisplay/util.js.map +1 -1
  26. package/dist/LinearMafRenderer/LinearMafRenderer.d.ts +4 -7
  27. package/dist/LinearMafRenderer/LinearMafRenderer.js.map +1 -1
  28. package/dist/LinearMafRenderer/components/LinearMafRendering.d.ts +1 -1
  29. package/dist/LinearMafRenderer/components/LinearMafRendering.js +27 -9
  30. package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
  31. package/dist/LinearMafRenderer/makeImageData.js +13 -9
  32. package/dist/LinearMafRenderer/makeImageData.js.map +1 -1
  33. package/dist/LinearMafRenderer/rendering/features.d.ts +0 -1
  34. package/dist/LinearMafRenderer/rendering/features.js +1 -14
  35. package/dist/LinearMafRenderer/rendering/features.js.map +1 -1
  36. package/dist/LinearMafRenderer/rendering/insertions.js +8 -6
  37. package/dist/LinearMafRenderer/rendering/insertions.js.map +1 -1
  38. package/dist/LinearMafRenderer/rendering/matches.d.ts +1 -1
  39. package/dist/LinearMafRenderer/rendering/matches.js +3 -15
  40. package/dist/LinearMafRenderer/rendering/matches.js.map +1 -1
  41. package/dist/LinearMafRenderer/rendering/spatialIndex.js +8 -2
  42. package/dist/LinearMafRenderer/rendering/spatialIndex.js.map +1 -1
  43. package/dist/LinearMafRenderer/rendering/text.js +1 -3
  44. package/dist/LinearMafRenderer/rendering/text.js.map +1 -1
  45. package/dist/LinearMafRenderer/rendering/types.d.ts +5 -4
  46. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +7 -7
  47. package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +4 -4
  48. package/dist/util/fastaUtils.js +23 -50
  49. package/dist/util/fastaUtils.js.map +1 -1
  50. package/package.json +9 -9
  51. package/src/LinearMafDisplay/components/InsertionSequenceDialog/InsertionSequenceDialog.tsx +105 -0
  52. package/src/LinearMafDisplay/components/LinearMafDisplayComponent.tsx +4 -4
  53. package/src/LinearMafDisplay/components/Sidebar/ColorLegend.tsx +2 -6
  54. package/src/LinearMafDisplay/components/Sidebar/RectBg.tsx +8 -3
  55. package/src/LinearMafDisplay/components/Sidebar/SvgWrapper.tsx +117 -15
  56. package/src/LinearMafDisplay/components/Sidebar/Tree.tsx +53 -8
  57. package/src/LinearMafDisplay/components/Sidebar/YScaleBars.tsx +0 -1
  58. package/src/LinearMafDisplay/renderSvg.tsx +1 -1
  59. package/src/LinearMafDisplay/stateModel.ts +109 -1
  60. package/src/LinearMafDisplay/util.ts +4 -2
  61. package/src/LinearMafRenderer/LinearMafRenderer.ts +2 -4
  62. package/src/LinearMafRenderer/components/LinearMafRendering.tsx +51 -30
  63. package/src/LinearMafRenderer/makeImageData.ts +21 -27
  64. package/src/LinearMafRenderer/rendering/features.ts +2 -36
  65. package/src/LinearMafRenderer/rendering/insertions.ts +11 -6
  66. package/src/LinearMafRenderer/rendering/matches.ts +2 -27
  67. package/src/LinearMafRenderer/rendering/spatialIndex.ts +9 -2
  68. package/src/LinearMafRenderer/rendering/text.ts +1 -2
  69. package/src/LinearMafRenderer/rendering/types.ts +7 -4
  70. package/src/util/fastaUtils.ts +28 -54
  71. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts +0 -30
  72. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +0 -253
  73. package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +0 -1
  74. package/dist/BgzipTaffyAdapter/configSchema.d.ts +0 -44
  75. package/dist/BgzipTaffyAdapter/configSchema.js +0 -53
  76. package/dist/BgzipTaffyAdapter/configSchema.js.map +0 -1
  77. package/dist/BgzipTaffyAdapter/index.d.ts +0 -2
  78. package/dist/BgzipTaffyAdapter/index.js +0 -11
  79. package/dist/BgzipTaffyAdapter/index.js.map +0 -1
  80. package/dist/BgzipTaffyAdapter/rowInstructions.d.ts +0 -35
  81. package/dist/BgzipTaffyAdapter/rowInstructions.js +0 -55
  82. package/dist/BgzipTaffyAdapter/rowInstructions.js.map +0 -1
  83. package/dist/BgzipTaffyAdapter/types.d.ts +0 -13
  84. package/dist/BgzipTaffyAdapter/types.js +0 -2
  85. package/dist/BgzipTaffyAdapter/types.js.map +0 -1
  86. package/dist/BgzipTaffyAdapter/util.d.ts +0 -1
  87. package/dist/BgzipTaffyAdapter/util.js +0 -22
  88. package/dist/BgzipTaffyAdapter/util.js.map +0 -1
  89. package/dist/BgzipTaffyAdapter/virtualOffset.d.ts +0 -8
  90. package/dist/BgzipTaffyAdapter/virtualOffset.js +0 -23
  91. package/dist/BgzipTaffyAdapter/virtualOffset.js.map +0 -1
  92. package/dist/LinearMafRenderer/components/ReactComponent.d.ts +0 -9
  93. package/dist/LinearMafRenderer/components/ReactComponent.js +0 -47
  94. package/dist/LinearMafRenderer/components/ReactComponent.js.map +0 -1
  95. package/dist/LinearMafRenderer/components/util.d.ts +0 -1
  96. package/dist/LinearMafRenderer/components/util.js +0 -13
  97. package/dist/LinearMafRenderer/components/util.js.map +0 -1
  98. package/dist/out.js +0 -32303
  99. package/dist/out.js.map +0 -7
  100. package/src/LinearMafRenderer/components/util.ts +0 -13
package/src/LinearMafRenderer/components/util.ts DELETED
@@ -1,13 +0,0 @@
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- export function minElt<T>(arr: Iterable<T>, cb: (arg: T) => number) {
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- let min = Infinity
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- let minElement: T | undefined
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- for (const entry of arr) {
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- const val = cb(entry)
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-
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- if (val < min) {
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- min = val
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- minElement = entry
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- }
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- }
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- return minElement
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- }