jbrowse-plugin-mafviewer 1.4.1 → 1.4.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearMafRenderer/components/LinearMafRendering.d.ts +1 -1
- package/dist/LinearMafRenderer/components/LinearMafRendering.js +0 -1
- package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
- package/dist/LinearMafRenderer/makeImageData.js +8 -3
- package/dist/LinearMafRenderer/makeImageData.js.map +1 -1
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +2 -2
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +3 -3
- package/package.json +3 -3
- package/src/LinearMafRenderer/components/LinearMafRendering.tsx +2 -2
- package/src/LinearMafRenderer/makeImageData.ts +16 -13
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts +0 -30
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +0 -253
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +0 -1
- package/dist/BgzipTaffyAdapter/configSchema.d.ts +0 -44
- package/dist/BgzipTaffyAdapter/configSchema.js +0 -53
- package/dist/BgzipTaffyAdapter/configSchema.js.map +0 -1
- package/dist/BgzipTaffyAdapter/index.d.ts +0 -2
- package/dist/BgzipTaffyAdapter/index.js +0 -11
- package/dist/BgzipTaffyAdapter/index.js.map +0 -1
- package/dist/BgzipTaffyAdapter/rowInstructions.d.ts +0 -35
- package/dist/BgzipTaffyAdapter/rowInstructions.js +0 -55
- package/dist/BgzipTaffyAdapter/rowInstructions.js.map +0 -1
- package/dist/BgzipTaffyAdapter/types.d.ts +0 -13
- package/dist/BgzipTaffyAdapter/types.js +0 -2
- package/dist/BgzipTaffyAdapter/types.js.map +0 -1
- package/dist/BgzipTaffyAdapter/util.d.ts +0 -1
- package/dist/BgzipTaffyAdapter/util.js +0 -22
- package/dist/BgzipTaffyAdapter/util.js.map +0 -1
- package/dist/BgzipTaffyAdapter/virtualOffset.d.ts +0 -8
- package/dist/BgzipTaffyAdapter/virtualOffset.js +0 -23
- package/dist/BgzipTaffyAdapter/virtualOffset.js.map +0 -1
- package/dist/LinearMafRenderer/components/ReactComponent.d.ts +0 -9
- package/dist/LinearMafRenderer/components/ReactComponent.js +0 -47
- package/dist/LinearMafRenderer/components/ReactComponent.js.map +0 -1
- package/dist/out.js +0 -32304
- package/dist/out.js.map +0 -7
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export default class VirtualOffset {
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blockPosition;
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dataPosition;
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constructor(blockPosition, dataPosition) {
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this.blockPosition = blockPosition; // < offset of the compressed data block
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this.dataPosition = dataPosition; // < offset into the uncompressed data
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}
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toString() {
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return `${this.blockPosition}:${this.dataPosition}`;
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}
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compareTo(b) {
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return (this.blockPosition - b.blockPosition || this.dataPosition - b.dataPosition);
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}
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}
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export function fromBytes(bytes, offset = 0) {
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return new VirtualOffset(bytes[offset + 7] * 0x10000000000 +
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bytes[offset + 6] * 0x100000000 +
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bytes[offset + 5] * 0x1000000 +
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bytes[offset + 4] * 0x10000 +
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bytes[offset + 3] * 0x100 +
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bytes[offset + 2], (bytes[offset + 1] << 8) | bytes[offset]);
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}
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//# sourceMappingURL=virtualOffset.js.map
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{"version":3,"file":"virtualOffset.js","sourceRoot":"","sources":["../../src/BgzipTaffyAdapter/virtualOffset.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,OAAO,OAAO,aAAa;IACzB,aAAa,CAAQ;IACrB,YAAY,CAAQ;IAC3B,YAAY,aAAqB,EAAE,YAAoB;QACrD,IAAI,CAAC,aAAa,GAAG,aAAa,CAAA,CAAC,wCAAwC;QAC3E,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA,CAAC,sCAAsC;IACzE,CAAC;IAED,QAAQ;QACN,OAAO,GAAG,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,YAAY,EAAE,CAAA;IACrD,CAAC;IAED,SAAS,CAAC,CAAgB;QACxB,OAAO,CACL,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,aAAa,IAAI,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,YAAY,CAC3E,CAAA;IACH,CAAC;CACF;AACD,MAAM,UAAU,SAAS,CAAC,KAAiB,EAAE,MAAM,GAAG,CAAC;IACrD,OAAO,IAAI,aAAa,CACtB,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,aAAa;QAChC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,WAAW;QAChC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,SAAS;QAC9B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,OAAO;QAC5B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,KAAK;QAC1B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,EACpB,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAE,IAAI,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAE,CAC3C,CAAA;AACH,CAAC"}
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import React, { useMemo, useRef } from 'react';
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import { PrerenderedCanvas } from '@jbrowse/core/ui';
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import { observer } from 'mobx-react';
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import RBush from 'rbush';
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const LinearMafRendering = observer(function (props) {
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const { displayModel, height, rbush } = props;
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const ref = useRef(null);
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const rbush2 = useMemo(() => new RBush().fromJSON(rbush), [rbush]);
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function getFeatureUnderMouse(eventClientX, eventClientY) {
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let offsetX = 0;
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let offsetY = 0;
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if (ref.current) {
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const r = ref.current.getBoundingClientRect();
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offsetX = eventClientX - r.left;
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offsetY = eventClientY - r.top;
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}
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const x = rbush2.search({
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minX: offsetX,
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maxX: offsetX + 1,
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minY: offsetY,
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maxY: offsetY + 1,
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});
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if (x.length) {
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// prioritize insertions
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const { minX, minY, maxX, maxY, ...rest } = x.find(f => f.isInsertion) || x[0];
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return rest;
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}
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else {
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return undefined;
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}
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}
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return (React.createElement("div", { ref: ref, onMouseMove: e => displayModel.setHoveredInfo?.(getFeatureUnderMouse(e.clientX, e.clientY)), onMouseLeave: () => {
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displayModel.setHoveredInfo?.(undefined);
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}, onMouseOut: () => {
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displayModel.setHoveredInfo?.(undefined);
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}, style: {
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overflow: 'visible',
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position: 'relative',
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height,
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} },
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React.createElement(PrerenderedCanvas, { ...props, style: {
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position: 'absolute',
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left: 0,
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} })));
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});
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export default LinearMafRendering;
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//# sourceMappingURL=ReactComponent.js.map
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{"version":3,"file":"ReactComponent.js","sourceRoot":"","sources":["../../../src/LinearMafRenderer/components/ReactComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AACpD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,MAAM,OAAO,CAAA;AAWzB,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,KAK7C;IACC,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC7C,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,IAAI,KAAK,EAAa,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAE7E,SAAS,oBAAoB,CAAC,YAAoB,EAAE,YAAoB;QACtE,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;YAChB,MAAM,CAAC,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;YAC7C,OAAO,GAAG,YAAY,GAAG,CAAC,CAAC,IAAI,CAAA;YAC/B,OAAO,GAAG,YAAY,GAAG,CAAC,CAAC,GAAG,CAAA;QAChC,CAAC;QAED,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC;YACtB,IAAI,EAAE,OAAO;YACb,IAAI,EAAE,OAAO,GAAG,CAAC;YACjB,IAAI,EAAE,OAAO;YACb,IAAI,EAAE,OAAO,GAAG,CAAC;SAClB,CAAC,CAAA;QACF,IAAI,CAAC,CAAC,MAAM,EAAE,CAAC;YACb,wBAAwB;YACxB,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,IAAI,EAAE,GACvC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,CAAE,CAAA;YACrC,OAAO,IAAI,CAAA;QACb,CAAC;aAAM,CAAC;YACN,OAAO,SAAS,CAAA;QAClB,CAAC;IACH,CAAC;IACD,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,CAAC,CAAC,EAAE,CACf,YAAY,CAAC,cAAc,EAAE,CAC3B,oBAAoB,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,OAAO,CAAC,CAC3C,EAEH,YAAY,EAAE,GAAG,EAAE;YACjB,YAAY,CAAC,cAAc,EAAE,CAAC,SAAS,CAAC,CAAA;QAC1C,CAAC,EACD,UAAU,EAAE,GAAG,EAAE;YACf,YAAY,CAAC,cAAc,EAAE,CAAC,SAAS,CAAC,CAAA;QAC1C,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,SAAS;YACnB,QAAQ,EAAE,UAAU;YACpB,MAAM;SACP;QAED,oBAAC,iBAAiB,OACZ,KAAK,EACT,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,IAAI,EAAE,CAAC;aACR,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
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