jbrowse-plugin-mafviewer 1.4.1 → 1.4.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearMafRenderer/components/LinearMafRendering.d.ts +1 -1
- package/dist/LinearMafRenderer/components/LinearMafRendering.js +0 -1
- package/dist/LinearMafRenderer/components/LinearMafRendering.js.map +1 -1
- package/dist/LinearMafRenderer/makeImageData.js +8 -3
- package/dist/LinearMafRenderer/makeImageData.js.map +1 -1
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js +2 -2
- package/dist/jbrowse-plugin-mafviewer.umd.production.min.js.map +3 -3
- package/package.json +3 -3
- package/src/LinearMafRenderer/components/LinearMafRendering.tsx +2 -2
- package/src/LinearMafRenderer/makeImageData.ts +16 -13
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.d.ts +0 -30
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js +0 -253
- package/dist/BgzipTaffyAdapter/BgzipTaffyAdapter.js.map +0 -1
- package/dist/BgzipTaffyAdapter/configSchema.d.ts +0 -44
- package/dist/BgzipTaffyAdapter/configSchema.js +0 -53
- package/dist/BgzipTaffyAdapter/configSchema.js.map +0 -1
- package/dist/BgzipTaffyAdapter/index.d.ts +0 -2
- package/dist/BgzipTaffyAdapter/index.js +0 -11
- package/dist/BgzipTaffyAdapter/index.js.map +0 -1
- package/dist/BgzipTaffyAdapter/rowInstructions.d.ts +0 -35
- package/dist/BgzipTaffyAdapter/rowInstructions.js +0 -55
- package/dist/BgzipTaffyAdapter/rowInstructions.js.map +0 -1
- package/dist/BgzipTaffyAdapter/types.d.ts +0 -13
- package/dist/BgzipTaffyAdapter/types.js +0 -2
- package/dist/BgzipTaffyAdapter/types.js.map +0 -1
- package/dist/BgzipTaffyAdapter/util.d.ts +0 -1
- package/dist/BgzipTaffyAdapter/util.js +0 -22
- package/dist/BgzipTaffyAdapter/util.js.map +0 -1
- package/dist/BgzipTaffyAdapter/virtualOffset.d.ts +0 -8
- package/dist/BgzipTaffyAdapter/virtualOffset.js +0 -23
- package/dist/BgzipTaffyAdapter/virtualOffset.js.map +0 -1
- package/dist/LinearMafRenderer/components/ReactComponent.d.ts +0 -9
- package/dist/LinearMafRenderer/components/ReactComponent.js +0 -47
- package/dist/LinearMafRenderer/components/ReactComponent.js.map +0 -1
- package/dist/out.js +0 -32304
- package/dist/out.js.map +0 -7
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@@ -1,6 +1,6 @@
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import React from 'react';
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-
import { RenderedBase } from '../rendering';
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import { Sample } from '../../LinearMafDisplay/types';
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+
import { RenderedBase } from '../rendering';
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type SerializedRBush = any;
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declare const LinearMafRendering: (props: {
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width: number;
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@@ -18,7 +18,6 @@ const LinearMafRendering = observer(function (props) {
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if (x.length) {
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const elt = x.find(idx => items[idx]?.isInsertion);
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const r = elt !== undefined ? items[elt] : items[x[0]];
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console.log({ x, r });
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const s = samples[r.sampleId];
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return {
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...r,
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@@ -1 +1 @@
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-
{"version":3,"file":"LinearMafRendering.js","sourceRoot":"","sources":["../../../src/LinearMafRenderer/components/LinearMafRendering.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AACpD,OAAO,QAAQ,MAAM,UAAU,CAAA;AAC/B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;
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+
{"version":3,"file":"LinearMafRendering.js","sourceRoot":"","sources":["../../../src/LinearMafRenderer/components/LinearMafRendering.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AACpD,OAAO,QAAQ,MAAM,UAAU,CAAA;AAC/B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAOrC,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,KAO7C;IACC,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAChE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAA;IAEjE,SAAS,oBAAoB,CAAC,YAAoB,EAAE,YAAoB;QACtE,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,OAAO,GAAG,CAAC,CAAA;QACf,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;YAChB,MAAM,CAAC,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;YAC7C,OAAO,GAAG,YAAY,GAAG,CAAC,CAAC,IAAI,CAAA;YAC/B,OAAO,GAAG,YAAY,GAAG,CAAC,CAAC,GAAG,CAAA;QAChC,CAAC;QAED,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,OAAO,EAAE,OAAO,GAAG,CAAC,EAAE,OAAO,GAAG,CAAC,CAAC,CAAA;QACnE,IAAI,CAAC,CAAC,MAAM,EAAE,CAAC;YACb,MAAM,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,WAAW,CAAC,CAAA;YAClD,MAAM,CAAC,GAAG,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAE,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAE,CAAE,CAAA;YACzD,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAA;YAC7B,OAAO;gBACL,GAAG,CAAC;gBACJ,QAAQ,EAAE,CAAC,EAAE,KAAK,IAAI,CAAC,EAAE,EAAE,IAAI,SAAS;aACzC,CAAA;QACH,CAAC;aAAM,CAAC;YACN,OAAO,SAAS,CAAA;QAClB,CAAC;IACH,CAAC;IACD,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,CAAC,CAAC,EAAE,CACf,YAAY,CAAC,cAAc,EAAE,CAC3B,oBAAoB,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,OAAO,CAAC,CAC3C,EAEH,YAAY,EAAE,GAAG,EAAE;YACjB,YAAY,CAAC,cAAc,EAAE,CAAC,SAAS,CAAC,CAAA;QAC1C,CAAC,EACD,UAAU,EAAE,GAAG,EAAE;YACf,YAAY,CAAC,cAAc,EAAE,CAAC,SAAS,CAAC,CAAA;QAC1C,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,SAAS;YACnB,QAAQ,EAAE,UAAU;YACpB,MAAM;SACP;QAED,oBAAC,iBAAiB,OACZ,KAAK,EACT,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,IAAI,EAAE,CAAC;aACR,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
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@@ -40,9 +40,14 @@ export function makeImageData({ ctx, renderArgs, }) {
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for (const feature of features.values()) {
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processFeatureInsertions(feature, region, bpPerPx, sampleToRowMap, renderingContext);
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}
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const flatbush = new Flatbush(renderingContext.spatialIndex.length);
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flatbush.add(
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const flatbush = new Flatbush(renderingContext.spatialIndex.length || 1);
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if (renderingContext.spatialIndex.length === 0) {
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flatbush.add(0, 0, 1, 1);
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}
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else {
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for (let i = 0, l = renderingContext.spatialIndexCoords.length; i < l; i += 4) {
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flatbush.add(renderingContext.spatialIndexCoords[i], renderingContext.spatialIndexCoords[i + 1], renderingContext.spatialIndexCoords[i + 2], renderingContext.spatialIndexCoords[i + 3]);
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}
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}
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flatbush.finish();
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return {
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@@ -1 +1 @@
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-
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{"version":3,"file":"makeImageData.js","sourceRoot":"","sources":["../../src/LinearMafRenderer/makeImageData.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAA;AAErD,OAAO,QAAQ,MAAM,UAAU,CAAA;AAE/B,OAAO,EACL,WAAW,EAGX,uBAAuB,EACvB,wBAAwB,GACzB,MAAM,aAAa,CAAA;AACpB,OAAO,EAAE,eAAe,EAAE,kBAAkB,EAAE,MAAM,QAAQ,CAAA;AAa5D,MAAM,UAAU,aAAa,CAAC,EAC5B,GAAG,EACH,UAAU,GAIX;IACC,MAAM,EACJ,OAAO,EACP,OAAO,EACP,SAAS,EACT,cAAc,EACd,KAAK,EAAE,WAAW,EAClB,iBAAiB,EACjB,OAAO,EACP,aAAa,EACb,QAAQ,EACR,eAAe,GAChB,GAAG,UAAU,CAAA;IAEd,MAAM,MAAM,GAAG,OAAO,CAAC,CAAC,CAAE,CAAA;IAC1B,MAAM,WAAW,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;IACzD,MAAM,CAAC,GAAG,SAAS,GAAG,aAAa,CAAA;IACnC,MAAM,KAAK,GAAG,kBAAkB,CAAC,WAAW,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,eAAe,CAAC,KAAK,CAAC,CAAA;IAC3C,MAAM,eAAe,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAA;IACjD,MAAM,cAAc,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,KAAK,GAAG,CAAC,GAAG,OAAO,CAAA;IACzB,MAAM,GAAG,GAAG,CAAC,GAAG,CAAC,CAAA;IACjB,MAAM,MAAM,GAAG,CAAC,SAAS,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;IAElC,GAAG,CAAC,IAAI,GAAG,WAAW,CAAA;IAEtB,MAAM,gBAAgB,GAAqB;QACzC,GAAG;QACH,KAAK;QACL,WAAW;QACX,SAAS;QACT,CAAC;QACD,GAAG;QACH,MAAM;QACN,YAAY;QACZ,eAAe;QACf,cAAc;QACd,iBAAiB;QACjB,eAAe;QACf,YAAY,EAAE,EAAE;QAChB,kBAAkB,EAAE,EAAE;QACtB,aAAa,EAAE,CAAC,QAAQ,EAAE,wDAAwD;KACnF,CAAA;IAED,kEAAkE;IAClE,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC;QACxC,uBAAuB,CACrB,OAAO,EACP,MAAM,EACN,OAAO,EACP,cAAc,EACd,gBAAgB,CACjB,CAAA;IACH,CAAC;IAED,wCAAwC;IACxC,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC;QACxC,wBAAwB,CACtB,OAAO,EACP,MAAM,EACN,OAAO,EACP,cAAc,EACd,gBAAgB,CACjB,CAAA;IACH,CAAC;IACD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,gBAAgB,CAAC,YAAY,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACxE,IAAI,gBAAgB,CAAC,YAAY,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC/C,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAC1B,CAAC;SAAM,CAAC;QACN,KACE,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,gBAAgB,CAAC,kBAAkB,CAAC,MAAM,EACzD,CAAC,GAAG,CAAC,EACL,CAAC,IAAI,CAAC,EACN,CAAC;YACD,QAAQ,CAAC,GAAG,CACV,gBAAgB,CAAC,kBAAkB,CAAC,CAAC,CAAE,EACvC,gBAAgB,CAAC,kBAAkB,CAAC,CAAC,GAAG,CAAC,CAAE,EAC3C,gBAAgB,CAAC,kBAAkB,CAAC,CAAC,GAAG,CAAC,CAAC,EAC1C,gBAAgB,CAAC,kBAAkB,CAAC,CAAC,GAAG,CAAC,CAAC,CAC3C,CAAA;QACH,CAAC;IACH,CAAC;IACD,QAAQ,CAAC,MAAM,EAAE,CAAA;IACjB,OAAO;QACL,QAAQ,EAAE,QAAQ,CAAC,IAAI;QACvB,KAAK,EAAE,gBAAgB,CAAC,YAAY;QACpC,OAAO;KACR,CAAA;AACH,CAAC"}
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