npm - jbrowse-plugin-graphgenomeviewer - Versions diffs - 7.4.2 → 7.4.4 - Mend

jbrowse-plugin-graphgenomeviewer 7.4.2 → 7.4.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (122) hide show

package/dist/chunks/chunk-G53BI7VK.js ADDED Viewed

	@@ -0,0 +1,2 @@
1	+ import{c as Wt,o as Ht,r as pt}from"./chunk-LE7FZM6Y.js";import{a as St,c as Dt,d as Vt,e as Zt}from"./chunk-6SWXMRAV.js";var fe="ws",ce="we",Xt=["elsewhere","break","end"],ke={missing:"not in the graph",elsewhere:"on nodes filed elsewhere",unknown:"gap, cause unknown",abridged:"abridged: steps not loaded"},ye="outside the extracted subgraph";function Kt(t,e,s){if(!e&&!s)return[{bp:t}];let n=Math.min(e?.trimmed??0,t),r=Math.min(s?.trimmed??0,t-n),i=t-n-r,h=e?.kind==="break"?Math.min(e.bp,i):0;i-=h;let c=s?.kind==="break"?Math.min(s.bp,i):0;i-=c;let o=[e,s].find(k=>k?.kind==="elsewhere");return[{bp:n},{bp:h,cause:"missing"},o?.kind==="elsewhere"?{bp:i,cause:"elsewhere",chunk:o.chunk}:{bp:i,cause:"unknown"},{bp:c,cause:"missing"},{bp:r}].filter(k=>k.bp>0)}function xt(t,e){let s=t.bp[e],n=t.chunkRefs[e];return qt(t.kindNames[t.kinds[e]],Number.isNaN(s)?void 0:s,t.trimmed[e],n<0?void 0:{refName:t.chunkRefNames[n],start:t.chunkStarts[e]})}function qt(t,e,s,n){let r=s>0?{trimmed:s}:{};return t==="elsewhere"&&n?{kind:t,chunk:n,...e===void 0?{}:{bp:e},...r}:t==="break"&&e!==void 0?{kind:t,bp:e,...n?{chunk:n}:{},...r}:t==="end"?{kind:t,...r}:void 0}function zt(t){let[e,...s]=t.split(","),n,r=0,i;for(let h of s)if(h.startsWith("bp="))n=+h.slice(3);else if(h.startsWith("trimmed="))r=+h.slice(8);else if(h.startsWith("chunk=")){let c=h.lastIndexOf(":");i={refName:h.slice(6,c),start:+h.slice(c+1)}}return qt(e,n,r,i)}function Ft(t,e){return{...t?{before:t}:{},...e?{after:e}:{}}}function Ae(t){let e=t[fe],s=t[ce];return Ft(typeof e=="string"?zt(e):void 0,typeof s=="string"?zt(s):void 0)}var we=class{constructor(){this.kinds=[],this.bp=[],this.trimmed=[],this.chunkRefs=[],this.chunkStarts=[],this.chunkRefNames=[],this.refIndex=new Map}push(t){this.kinds.push(Xt.indexOf(t.kind)),this.bp.push("bp"in t&&t.bp!==void 0?t.bp:NaN),this.trimmed.push(t.trimmed??0);let e="chunk"in t?t.chunk:void 0;if(e){let s=this.refIndex.get(e.refName);s===void 0&&(s=this.chunkRefNames.length,this.refIndex.set(e.refName,s),this.chunkRefNames.push(e.refName)),this.chunkRefs.push(s),this.chunkStarts.push(e.start)}else this.chunkRefs.push(-1),this.chunkStarts.push(NaN)}table(){return{kinds:Uint8Array.from(this.kinds),kindNames:[...Xt],bp:Float64Array.from(this.bp),trimmed:Float64Array.from(this.trimmed),chunkRefs:Int32Array.from(this.chunkRefs),chunkStarts:Float64Array.from(this.chunkStarts),chunkRefNames:this.chunkRefNames}}};function le(t,e,s){return e===0?t:`${t}:${e}-${s}`}function Mt(t,e){let s=t.names[e],n=Zt(s),r=t.starts[e],i=t.abridgedSteps?.[e]??Number.NaN,h=Number.isNaN(i)?{}:{abridged:{steps:i,bp:t.abridgedBp?.[e]??0}};return n?{name:`${n.sample}#${n.haplotype}#${n.contig}`,start:r,...n,...Ft(t.before&&xt(t.before,e),t.after&&xt(t.after,e)),...h}:{name:le(s,r,t.ends[e]),start:r}}function he(t,e,s,n){let r=new Int32Array(s+1);for(let o of t)r[o+1]++;for(let o=0;o<s;o++)r[o+1]+=r[o];let i=r.slice(0,s),h=new Int32Array(t.length);t.forEach((o,p)=>{h[i[o]++]=e[p]});let c=new Int32Array(n.length).fill(-1);return Array.from({length:s},(o,p)=>{let k=[];for(let R=r[p];R<r[p+1];R++){let j=h[R];c[j]!==p&&(c[j]=p,k.push(n[j]))}return k})}function Tt({nodes:t,links:e,walks:s},n){let r=new Uint8Array(t.names.length),i=(c,o)=>{r[c]===0&&(r[c]=o?2:1)};for(let c=0;c<e.from.length;c++)i(e.from[c],e.strands[c]&1),i(e.to[c],e.strands[c]&2);let h=s.offsets[s.names.length]??0;for(let c=0;c<h;c++){let o=s.steps[c];i(o,s.reversed[c]),n&&n[o]++}return t.names.map((c,o)=>`${c}${r[o]===2?"-":"+"}`)}function xe({nodes:t,links:e,walks:s},n="Imported GFA"){let r=t.names.length,i=t.lengths.length,h=[];for(let a=0;a<s.names.length;a++)s.offsets[a+1]>s.offsets[a]&&h.push(a);let c=new Int32Array(r),o=Tt({nodes:t,links:e,walks:s},c),p=[];for(let a=0;a<i;a++){let v=t.refs[a];p.push({id:o[a],name:t.names[a],length:t.lengths[a],depth:Math.max(c[a],1),stable:v<0?void 0:{refName:t.refNames[v],start:t.starts[a],rank:t.ranks[a]},samples:void 0})}let k=[],R=new Array(r),j=(a,v)=>{let u=R[a];if(u){for(let w=0;w<u.length;w+=2)if(u[w]===v)return u[w+1]}},W=(a,v,u)=>{let w=R[a];w?w.push(v,u):R[a]=[v,u]},at=[],tt=0;for(let a=0;a<e.from.length;a++){let v=e.from[a],u=e.to[a];k.push({from:o[v],to:o[u],fromStrand:e.strands[a]&1?"-":"+",toStrand:e.strands[a]&2?"-":"+"});let w=j(v,u);w===void 0&&(w=tt++,W(v,u,w),W(u,v,w)),at.push(w)}let M=new Int32Array(r+1);for(let a=0;a<r;a++)M[a+1]=M[a]+(R[a]?.length??0)/2;let it=new Int32Array(M[r]),ft=new Int32Array(M[r]);R.forEach((a,v)=>{for(let u=0;u<a.length;u+=2)it[M[v]+u/2]=a[u],ft[M[v]+u/2]=a[u+1]});let Rt=(a,v)=>{for(let u=M[a];u<M[a+1];u++)if(it[u]===v)return ft[u];return-1},O=new Map,B=[],V=new Int32Array(s.offsets[s.names.length]??0),ct=new Int32Array(V.length),et=0,x=new Int32Array(tt).fill(-1),gt=[],U=[],Z=s.offsets[s.names.length]??0,lt=new Int32Array(Z),Nt=new Float64Array(Z),H=new Uint8Array(Z),I=new Int32Array(r).fill(-1),T=[],G=[0],st=[],X=new Map,z=[];for(let a of h){let v=Mt(s,a),{start:u,name:w}=v,K=v.sample===void 0?s.names[a]:w,q=O.get(K);q===void 0&&(q=B.length,O.set(K,q),B.push(K),st.push(St(K)));let f=X.get(w);f===void 0&&(f=z.length,X.set(w,f),z.push(w));let g=st[q],$=s.offsets[a],L=new Array(s.offsets[a+1]-$),E=u,y=-1;for(let P=$;P<s.offsets[a+1];P++){let S=s.steps[P];L[P-$]=o[S],I[S]===-1&&(I[S]=G.at(-1),G.push(I[S]+c[S]),T.push(S));let J=I[S]++;if(lt[J]=q,Nt[J]=E,H[J]=s.reversed[P],E+=S<i?t.lengths[S]:0,y>=0){let D=Rt(y,S);D>=0&&x[D]!==a&&(x[D]=a,V[et]=D,ct[et++]=f)}y=S}gt.push({...v,nodeIds:L}),U.push({name:K,sample:g,start:u,length:E-u})}let bt=he(V.subarray(0,et),ct,tt,z);k.forEach((a,v)=>{let u=bt[at[v]];u.length>0&&(a.pathIds=u)});let ht=h.length>0;return{name:n,nodes:p,edges:k,paths:ht?gt:void 0,anchorPaths:ht?U:void 0,pathVisits:ht?new Ht({segments:T.map(a=>t.names[a]),offsets:Int32Array.from(G),path:lt.subarray(0,G.at(-1)),start:Nt.subarray(0,G.at(-1)),reversed:H.subarray(0,G.at(-1)),paths:B,samples:st}):void 0,anchoredBy:p.some(a=>a.stable)?"tags":void 0}}var Pt=1,Qt=2,It=4,Yt=[void 0,"missing","elsewhere","unknown","abridged"],te=3,ue=t=>Yt.indexOf(t)<<te;function ee(t,e,s){return e!==void 0&&t.includes(e)?e:t.find(n=>s.has(n))??t[0]}function de(t){return ee((t.paths??[]).map(e=>pt(e.name).name),t.referencePath,new Set(t.nodes.flatMap(e=>e.stable?.rank===0?[e.stable.refName]:[])))}function pe(t){let e=new Map,s=[],n=[],r=p=>{let k=e.get(p);return k===void 0&&(k=s.length,e.set(p,k),s.push(p),n.push(0)),k};for(let p of t.nodes)n[r(p.id)]=p.length;let i=t.paths??[],h=new Int32Array(i.length),c=new Int32Array(i.length),o=[];return i.forEach((p,k)=>{h[k]=o.length;for(let R of p.nodeIds)o.push(r(R));c[k]=o.length}),{heads:i,from:h,to:c,steps:Int32Array.from(o),lengths:Int32Array.from(n),names:s,reference:de(t)}}function me(t,e,s){let{nodes:n,walks:r}=t,i=[];for(let o=0;o<r.names.length;o++)r.offsets[o+1]>r.offsets[o]&&i.push(o);let h=i.map(o=>Mt(r,o)),c=new Set;for(let o=0;o<n.lengths.length;o++)n.refs[o]>=0&&n.ranks[o]===0&&c.add(n.refNames[n.refs[o]]);return{heads:h,from:Int32Array.from(i,o=>r.offsets[o]),to:Int32Array.from(i,o=>r.offsets[o+1]),steps:r.steps,lengths:n.lengths,names:s?Tt(t):n.names,reference:ee(h.map(o=>pt(o.name).name),e,c)}}function se(t){return t.sample??St(t.name)}function ge(t){return t.haplotype!==void 0&&t.sample!==void 0?`${t.sample}#${t.haplotype}`:se(t)}var Jt=class{constructor(t){this.offsets=[0],this.values=Array.from({length:t},()=>[])}get length(){return this.values[0].length}push(t,e,s,n,r){let i=this.values;i[0].push(t),i[1].push(e),i[2].push(s),i[3].push(n),r!==void 0&&i[4].push(r)}endRow(){this.offsets.push(this.length)}reorder(t,e){let s=new Uint32Array(t.length+1);t.forEach((r,i)=>{s[i+1]=s[i]+this.offsets[r+1]-this.offsets[r]});let n=e.map((r,i)=>{let h=this.values[i],c=r(this.length),o=0;for(let p of t)for(let k=this.offsets[p];k<this.offsets[p+1];k++)c[o++]=h[k];return c});return{offsets:s,columns:n}}},mt=t=>new Float64Array(t);function je(t,e,s={}){let{heads:n,from:r,to:i,steps:h,lengths:c,names:o,reference:p}="walks"in t?me(t,s.referencePath,s.visits):pe(t),k=c.length,R=f=>f<k?c[f]:0,j=f=>pt(n[f].name).name,W=f=>n[f].start,at=(f,g)=>(W(f)??0)-(W(g)??0),tt=n.map((f,g)=>g),M=tt.filter(f=>j(f)===p).sort(at),it=M[0],ft=tt.filter(f=>j(f)!==p);if(it===void 0\|\|ft.length===0)return;let Rt=Wt(ft,j),O=new Float64Array(o.length).fill(Number.NaN),B=new Float64Array(o.length),V=new Map,ct=!1,et=!1,x=e&&e.end>e.start?e:void 0;for(let f of M){let g=W(f)??0;for(let $=r[f],L=i[f];$<L;$++){let E=h[$],y=R(E);if(Number.isNaN(O[E]))O[E]=g,B[E]=g+y,x&&(ct\|\|=g+y<=x.start,et\|\|=g>=x.end);else{let P=V.get(E);P?P.push(g):V.set(E,[O[E],g])}g+=y}}let gt=x===void 0\|\|ct&&et,U=new Jt(5),Z=[],lt=new Map,Nt=f=>{if(!f)return-1;let g=`${f.refName}:${f.start}`,$=lt.get(g);return $===void 0&&($=Z.length,lt.set(g,$),Z.push(f)),$},H=s.visits?new Jt(4):void 0,I=new Int32Array(0),T=new Float64Array(0),G=f=>{let g=n[f[0]],$=[...f].sort(at),L=$.length-1,E=0;for(let l of $)L+=i[l]-r[l]+(n[l].abridged?1:0),E+=n[l].abridged?.steps??0;L>I.length&&(I=new Int32Array(L2),T=new Float64Array(L2));let y=0,P=!1,S,J,D=new Map;for(let l of $){let d=W(l);(d===void 0\|\|S!==void 0&&d<S)&&(P=!0),S!==void 0&&d!==void 0&&d>S&&(D.set(y,Kt(d-S,J===void 0?void 0:n[J].after,n[l].before)),I[y]=-(d-S),T[y++]=S);let b=d??0,A=n[l].abridged;for(let m=r[l],N=i[l];m<N;m++){let F=h[m],_=A?A.bp-(b-(d??0))-R(F):0;_>0&&m===N-1&&m>r[l]&&(D.set(y,[{bp:_,cause:"abridged"}]),I[y]=-_,T[y++]=b,b+=_),I[y]=F,T[y++]=b,b+=R(F)}S=d===void 0?void 0:b,J=l}let _t=l=>l>=0&&l<y&&I[l]>=0&&!Number.isNaN(O[I[l]]),$t=l=>{let d=I[l];return T[l]+(d<0?-d:R(d))},ne=(l,d)=>{let b=l>=0?l:d,A=-1;for(let Y=1;A<0&&Y<y;Y++)A=[b-Y,b+Y].find(_t)??-1;if(A<0)return;let m=A>b==O[I[A]]>O[I[b]],N=m===(b===l),F=N?y-1:0,_=_t(F);return{stop:{contigEnds:_,shortBp:_?Math.max(0,x.start-B[I[F]],O[I[F]]-x.end):0},lo:N?b+1:0,hi:N?y:b,backward:!m,axisStart:m?N?$t(b):T[0]:N?$t(y-1):T[b]}},vt=0,kt=y,ut=!1,Ut=!0,dt=-1,jt=-1,Ot,Bt;if(x&&gt){let l=-1,d=-1,b=-1/0,A=1/0;for(let m=0;m<y;m++){let N=I[m];N>=0&&!Number.isNaN(O[N])&&(B[N]<=x.start&&B[N]>b&&(b=B[N],l=m),O[N]>=x.end&&O[N]<A&&(A=O[N],d=m))}if(l<0\|\|d<0){Ut=!1;let m=l>=0\|\|d>=0?ne(l,d):void 0;m&&({lo:vt,hi:kt,backward:ut,axisStart:Ot,stop:Bt}=m)}else vt=Math.min(l,d)+1,kt=Math.max(l,d),ut=l>d,dt=l,jt=d}let yt=g.contig??Vt(pt(g.name).name),re=P\|\|y===0?void 0:Ot!==void 0?{contig:yt,start:Ot,reversed:ut}:dt<0?{contig:yt,start:T[0],reversed:!1}:dt<jt?{contig:yt,start:$t(dt),reversed:!1}:{contig:yt,start:T[dt],reversed:!0},nt=0,Gt=0,Lt=0,rt=0,C=-1,ot=0,Q=Number.NaN,At=Number.NaN,oe=l=>{let d=V.get(l);if(!d\|\|Number.isNaN(At))return O[l];let b=R(l),A=d[0],m=1/0;for(let N of d){let F=Math.min(Math.abs(N-At),Math.abs(N+b-At));F<m&&(A=N,m=F)}return A},[,Et,ae,ie]=U.values;for(let l=vt;l<kt;l++){let d=ut?kt-1-(l-vt):l,b=I[d];if(b<0){let Y=D.get(d);for(let wt of ut?[...Y].reverse():Y)U.push(nt,wt.bp,Number.NaN,It\|ue(wt.cause),Nt(wt.chunk)),nt+=wt.bp;C=U.length-1,ot=It,Q=Number.NaN,Lt+=-b,rt=0;continue}let A=R(b),m=oe(b),N=!Number.isNaN(m);H?.push(b,nt,A,N?1:0);let F=C>=0&&!Number.isNaN(Q),_=N&&F&&rt>=0&&Q+(Et[C]??0)===m,Ct=N&&F&&rt<=0&&m+A===Q;!N&&C>=0&&!(ot&(Pt\|It))?Et[C]+=A:_\|\|Ct?(Et[C]+=A,_\|\|(Q=m,ae[C]=m,ot\|=Qt,ie[C]=ot),rt=_?1:-1):(ot=N?Pt:0,Q=N?m:Number.NaN,U.push(nt,A,Q,ot,-1),C=U.length-1,rt=0),nt+=A,N?At=rt<0?m:m+A:Gt+=A}return U.endRow(),H?.endRow(),{name:g.name,label:ge(g),sample:se(g),haplotype:g.haplotype,bp:nt,offReferenceBp:Gt,gapBp:Lt,complete:Ut,stop:Bt,axis:re,...E>0?{abridgedSteps:E}:{}}},st=G(M),X=[...Rt.values()].map((f,g)=>({meta:G(f),row:g+1})),z=[st,...X.map(f=>f.meta)];if(new Set(z.map(f=>f.label)).size<z.length)for(let f of z)f.label=Dt(f.name)??f.label;X.sort((f,g)=>Number(g.meta.complete)-Number(f.meta.complete)\|\|g.meta.bp-f.meta.bp\|\|f.meta.label.localeCompare(g.meta.label));let bt=[0,...X.map(f=>f.row)],{offsets:ht,columns:a}=U.reorder(bt,[mt,mt,mt,f=>new Uint8Array(f),f=>new Int32Array(f)]),[v,u,w,K,q]=a;return{origin:x?x.start:W(it)??0,rows:[st,...X.map(f=>f.meta)],offsets:ht,start:v,bp:u,referenceStart:w,flags:K,chunk:q,chunks:Z,visits:H&&Ne(H,bt,o)}}function Ne(t,e,s){let{offsets:n,columns:r}=t.reorder(e,[p=>new Int32Array(p),mt,mt,p=>new Uint8Array(p)]),[i,h,c,o]=r;return{offsets:n,node:i,start:h,bp:c,onReference:o,names:s}}function be(t,e){let s=t.flags[e],n={start:t.start[e],bp:t.bp[e],onReference:(s&Pt)!==0};if(s&It){n.gap=!0;let r=Yt[s>>te&7];r&&(n.cause=r);let i=t.chunks[t.chunk[e]];i&&(n.chunk=i)}else n.referenceStart=Number.isNaN(t.referenceStart[e])?void 0:t.referenceStart[e];return s&Qt&&(n.reversed=!0),n}function ve(t,e){let s=[];for(let n=t.offsets[e];n<t.offsets[e+1];n++)s.push({node:t.names[t.node[n]],start:t.start[n],bp:t.bp[n],onReference:t.onReference[n]===1});return s}function Be(t,e){let s=t.rows.map((n,r)=>{let i=[];for(let h=t.offsets[r];h<t.offsets[r+1];h++)i.push(be(t,h));return{...n,runs:i,visits:t.visits&&ve(t.visits,r)}});return{origin:t.origin,unit:e,reference:s[0],rows:s.slice(1)}}export{fe as a,ce as b,ke as c,ye as d,Kt as e,zt as f,Ae as g,we as h,Mt as i,xe as j,de as k,je as l,Be as m};
2	+ //# sourceMappingURL=chunk-G53BI7VK.js.map

package/dist/chunks/{chunk-MEMUEG5Z.js.map → chunk-G53BI7VK.js.map} RENAMED Viewed

@@ -1,7 +1,7 @@
 {
   "version": 3,
-  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@11.7.1/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-LG2UK4MB.js", "../../node_modules/.pnpm/@jbrowse+bandage-core@11.7.1/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-7L7MN2OM.js", "../../node_modules/.pnpm/@jbrowse+bandage-core@11.7.1/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-G7SG4XMK.js"],
-  "sourcesContent": ["// src/gfa/walkStops.ts\nvar START_STOP_TAG = \"ws\";\nvar END_STOP_TAG = \"we\";\nvar STOP_KINDS = [\"elsewhere\", \"break\", \"end\"];\nvar GAP_CAUSE_TEXT = {\n  missing: \"not in the graph\",\n  elsewhere: \"on nodes filed elsewhere\",\n  unknown: \"gap, cause unknown\",\n  abridged: \"abridged: steps not loaded\"\n};\nvar OUTSIDE_TEXT = \"outside the extracted subgraph\";\nfunction gapParts(bp, after, before) {\n  if (!after && !before) {\n    return [{ bp }];\n  }\n  const left = Math.min(after?.trimmed ?? 0, bp);\n  const right = Math.min(before?.trimmed ?? 0, bp - left);\n  let rest = bp - left - right;\n  const lead = after?.kind === \"break\" ? Math.min(after.bp, rest) : 0;\n  rest -= lead;\n  const trail = before?.kind === \"break\" ? Math.min(before.bp, rest) : 0;\n  rest -= trail;\n  const elsewhere = [after, before].find((s) => s?.kind === \"elsewhere\");\n  const parts = [\n    { bp: left },\n    { bp: lead, cause: \"missing\" },\n    elsewhere?.kind === \"elsewhere\" ? { bp: rest, cause: \"elsewhere\", chunk: elsewhere.chunk } : { bp: rest, cause: \"unknown\" },\n    { bp: trail, cause: \"missing\" },\n    { bp: right }\n  ];\n  return parts.filter((part) => part.bp > 0);\n}\nfunction stopAt(table, i) {\n  const bp = table.bp[i];\n  const ref = table.chunkRefs[i];\n  return stopOf(\n    table.kindNames[table.kinds[i]],\n    Number.isNaN(bp) ? void 0 : bp,\n    table.trimmed[i],\n    ref < 0 ? void 0 : { refName: table.chunkRefNames[ref], start: table.chunkStarts[i] }\n  );\n}\nfunction stopOf(kind, bp, trimmed, chunk) {\n  const cut = trimmed > 0 ? { trimmed } : {};\n  if (kind === \"elsewhere\" && chunk) {\n    return { kind, chunk, ...bp === void 0 ? {} : { bp }, ...cut };\n  }\n  if (kind === \"break\" && bp !== void 0) {\n    return { kind, bp, ...chunk ? { chunk } : {}, ...cut };\n  }\n  return kind === \"end\" ? { kind, ...cut } : void 0;\n}\nfunction stopTag(stop) {\n  const parts = [stop.kind];\n  if (\"bp\" in stop && stop.bp !== void 0) {\n    parts.push(`bp=${stop.bp}`);\n  }\n  if (stop.trimmed) {\n    parts.push(`trimmed=${stop.trimmed}`);\n  }\n  if (\"chunk\" in stop && stop.chunk) {\n    parts.push(`chunk=${stop.chunk.refName}:${stop.chunk.start}`);\n  }\n  return parts.join(\",\");\n}\nfunction parseStopTag(value) {\n  const [kind, ...fields] = value.split(\",\");\n  let bp;\n  let trimmed = 0;\n  let chunk;\n  for (const field of fields) {\n    if (field.startsWith(\"bp=\")) {\n      bp = +field.slice(3);\n    } else if (field.startsWith(\"trimmed=\")) {\n      trimmed = +field.slice(8);\n    } else if (field.startsWith(\"chunk=\")) {\n      const at = field.lastIndexOf(\":\");\n      chunk = { refName: field.slice(6, at), start: +field.slice(at + 1) };\n    }\n  }\n  return stopOf(kind, bp, trimmed, chunk);\n}\nfunction stopFields(before, after) {\n  return {\n    ...before ? { before } : {},\n    ...after ? { after } : {}\n  };\n}\nfunction walkStopFields(tags) {\n  const before = tags[START_STOP_TAG];\n  const after = tags[END_STOP_TAG];\n  return stopFields(\n    typeof before === \"string\" ? parseStopTag(before) : void 0,\n    typeof after === \"string\" ? parseStopTag(after) : void 0\n  );\n}\nfunction walkStopTags(walks, p) {\n  const tags = [];\n  for (const [tag, table] of [\n    [START_STOP_TAG, walks.before],\n    [END_STOP_TAG, walks.after]\n  ]) {\n    const stop = table && stopAt(table, p);\n    if (stop) {\n      tags.push(`\t${tag}:Z:${stopTag(stop)}`);\n    }\n  }\n  return tags.join(\"\");\n}\nvar StopColumns = class {\n  constructor() {\n    this.kinds = [];\n    this.bp = [];\n    this.trimmed = [];\n    this.chunkRefs = [];\n    this.chunkStarts = [];\n    this.chunkRefNames = [];\n    this.refIndex = /* @__PURE__ */ new Map();\n  }\n  push(stop) {\n    this.kinds.push(STOP_KINDS.indexOf(stop.kind));\n    this.bp.push(\"bp\" in stop && stop.bp !== void 0 ? stop.bp : NaN);\n    this.trimmed.push(stop.trimmed ?? 0);\n    const chunk = \"chunk\" in stop ? stop.chunk : void 0;\n    if (chunk) {\n      let ref = this.refIndex.get(chunk.refName);\n      if (ref === void 0) {\n        ref = this.chunkRefNames.length;\n        this.refIndex.set(chunk.refName, ref);\n        this.chunkRefNames.push(chunk.refName);\n      }\n      this.chunkRefs.push(ref);\n      this.chunkStarts.push(chunk.start);\n    } else {\n      this.chunkRefs.push(-1);\n      this.chunkStarts.push(NaN);\n    }\n  }\n  table() {\n    return {\n      kinds: Uint8Array.from(this.kinds),\n      kindNames: [...STOP_KINDS],\n      bp: Float64Array.from(this.bp),\n      trimmed: Float64Array.from(this.trimmed),\n      chunkRefs: Int32Array.from(this.chunkRefs),\n      chunkStarts: Float64Array.from(this.chunkStarts),\n      chunkRefNames: this.chunkRefNames\n    };\n  }\n};\n\nexport {\n  START_STOP_TAG,\n  END_STOP_TAG,\n  GAP_CAUSE_TEXT,\n  OUTSIDE_TEXT,\n  gapParts,\n  stopAt,\n  stopTag,\n  parseStopTag,\n  stopFields,\n  walkStopFields,\n  walkStopTags,\n  StopColumns\n};\n", "import {\n  stopAt,\n  stopFields,\n  walkStopTags\n} from \"./chunk-LG2UK4MB.js\";\nimport {\n  PathVisits\n} from \"./chunk-ZPZ7GNBT.js\";\nimport {\n  panSNFields,\n  panSNSample\n} from \"./chunk-2JL2JVZ2.js\";\n\n// src/gfa/graphTables.ts\nfunction pLineName(name, start, end) {\n  return start === 0 ? name : `${name}:${start}-${end}`;\n}\nfunction tablePath(w, p) {\n  const walkName = w.names[p];\n  const fields = panSNFields(walkName);\n  const start = w.starts[p];\n  const steps = w.abridgedSteps?.[p] ?? Number.NaN;\n  const abridged = Number.isNaN(steps) ? {} : { abridged: { steps, bp: w.abridgedBp?.[p] ?? 0 } };\n  return fields ? {\n    name: `${fields.sample}#${fields.haplotype}#${fields.contig}`,\n    start,\n    ...fields,\n    ...stopFields(\n      w.before && stopAt(w.before, p),\n      w.after && stopAt(w.after, p)\n    ),\n    ...abridged\n  } : { name: pLineName(walkName, start, w.ends[p]), start };\n}\nfunction namesByList(lists, names, listCount, pathNames) {\n  const starts = new Int32Array(listCount + 1);\n  for (const list of lists) {\n    starts[list + 1]++;\n  }\n  for (let i = 0; i < listCount; i++) {\n    starts[i + 1] += starts[i];\n  }\n  const fill = starts.slice(0, listCount);\n  const grouped = new Int32Array(lists.length);\n  lists.forEach((list, i) => {\n    grouped[fill[list]++] = names[i];\n  });\n  const listed = new Int32Array(pathNames.length).fill(-1);\n  return Array.from({ length: listCount }, (_, list) => {\n    const out = [];\n    for (let i = starts[list]; i < starts[list + 1]; i++) {\n      const k = grouped[i];\n      if (listed[k] !== list) {\n        listed[k] = list;\n        out.push(pathNames[k]);\n      }\n    }\n    return out;\n  });\n}\nfunction tableNodeIds({ nodes: n, links: l, walks: w }, traversals) {\n  const canonical = new Uint8Array(n.names.length);\n  const claim = (node, reversed) => {\n    if (canonical[node] === 0) {\n      canonical[node] = reversed ? 2 : 1;\n    }\n  };\n  for (let i = 0; i < l.from.length; i++) {\n    claim(l.from[i], l.strands[i] & 1);\n    claim(l.to[i], l.strands[i] & 2);\n  }\n  const stepCount = w.offsets[w.names.length] ?? 0;\n  for (let s = 0; s < stepCount; s++) {\n    const node = w.steps[s];\n    claim(node, w.reversed[s]);\n    if (traversals) {\n      traversals[node]++;\n    }\n  }\n  return n.names.map(\n    (segment, i) => `${segment}${canonical[i] === 2 ? \"-\" : \"+\"}`\n  );\n}\nfunction graphFromTables({ nodes: n, links: l, walks: w }, name = \"Imported GFA\") {\n  const count = n.names.length;\n  const declared = n.lengths.length;\n  const drawnWalks = [];\n  for (let p = 0; p < w.names.length; p++) {\n    if (w.offsets[p + 1] > w.offsets[p]) {\n      drawnWalks.push(p);\n    }\n  }\n  const traversals = new Int32Array(count);\n  const ids = tableNodeIds({ nodes: n, links: l, walks: w }, traversals);\n  const nodes = [];\n  for (let i = 0; i < declared; i++) {\n    const ref = n.refs[i];\n    nodes.push({\n      id: ids[i],\n      name: n.names[i],\n      length: n.lengths[i],\n      depth: Math.max(traversals[i], 1),\n      stable: ref < 0 ? void 0 : {\n        refName: n.refNames[ref],\n        start: n.starts[i],\n        rank: n.ranks[i]\n      },\n      samples: void 0\n    });\n  }\n  const edges = [];\n  const neighbours = new Array(count);\n  const pairList = (a, b) => {\n    const near = neighbours[a];\n    if (near) {\n      for (let j = 0; j < near.length; j += 2) {\n        if (near[j] === b) {\n          return near[j + 1];\n        }\n      }\n    }\n    return void 0;\n  };\n  const addPair = (a, b, list) => {\n    const near = neighbours[a];\n    if (near) {\n      near.push(b, list);\n    } else {\n      neighbours[a] = [b, list];\n    }\n  };\n  const edgeLists = [];\n  let lists = 0;\n  for (let i = 0; i < l.from.length; i++) {\n    const a = l.from[i];\n    const b = l.to[i];\n    edges.push({\n      from: ids[a],\n      to: ids[b],\n      fromStrand: l.strands[i] & 1 ? \"-\" : \"+\",\n      toStrand: l.strands[i] & 2 ? \"-\" : \"+\"\n    });\n    let list = pairList(a, b);\n    if (list === void 0) {\n      list = lists++;\n      addPair(a, b, list);\n      addPair(b, a, list);\n    }\n    edgeLists.push(list);\n  }\n  const adjacency = new Int32Array(count + 1);\n  for (let a = 0; a < count; a++) {\n    adjacency[a + 1] = adjacency[a] + (neighbours[a]?.length ?? 0) / 2;\n  }\n  const adjacentNode = new Int32Array(adjacency[count]);\n  const adjacentList = new Int32Array(adjacency[count]);\n  neighbours.forEach((near, a) => {\n    for (let j = 0; j < near.length; j += 2) {\n      adjacentNode[adjacency[a] + j / 2] = near[j];\n      adjacentList[adjacency[a] + j / 2] = near[j + 1];\n    }\n  });\n  const listOf = (a, b) => {\n    for (let j = adjacency[a]; j < adjacency[a + 1]; j++) {\n      if (adjacentNode[j] === b) {\n        return adjacentList[j];\n      }\n    }\n    return -1;\n  };\n  const nameIndex = /* @__PURE__ */ new Map();\n  const pathNames = [];\n  const crossedList = new Int32Array(w.offsets[w.names.length] ?? 0);\n  const crossedName = new Int32Array(crossedList.length);\n  let crossings = 0;\n  const lastWalk = new Int32Array(lists).fill(-1);\n  const paths = [];\n  const anchorPaths = [];\n  const totalSteps = w.offsets[w.names.length] ?? 0;\n  const visitPath = new Int32Array(totalSteps);\n  const visitStart = new Float64Array(totalSteps);\n  const visitReversed = new Uint8Array(totalSteps);\n  const fill = new Int32Array(count).fill(-1);\n  const visitOrder = [];\n  const blocks = [0];\n  const pathSamples = [];\n  const edgeNameIndex = /* @__PURE__ */ new Map();\n  const edgeNames = [];\n  for (const p of drawnWalks) {\n    const head = tablePath(w, p);\n    const { start, name: pathName } = head;\n    const visitName = head.sample === void 0 ? w.names[p] : pathName;\n    let named = nameIndex.get(visitName);\n    if (named === void 0) {\n      named = pathNames.length;\n      nameIndex.set(visitName, named);\n      pathNames.push(visitName);\n      pathSamples.push(panSNSample(visitName));\n    }\n    let edgeNamed = edgeNameIndex.get(pathName);\n    if (edgeNamed === void 0) {\n      edgeNamed = edgeNames.length;\n      edgeNameIndex.set(pathName, edgeNamed);\n      edgeNames.push(pathName);\n    }\n    const visitSample = pathSamples[named];\n    const first = w.offsets[p];\n    const nodeIds = new Array(w.offsets[p + 1] - first);\n    let pos = start;\n    let prev = -1;\n    for (let s = first; s < w.offsets[p + 1]; s++) {\n      const node = w.steps[s];\n      nodeIds[s - first] = ids[node];\n      if (fill[node] === -1) {\n        fill[node] = blocks.at(-1);\n        blocks.push(fill[node] + traversals[node]);\n        visitOrder.push(node);\n      }\n      const at = fill[node]++;\n      visitPath[at] = named;\n      visitStart[at] = pos;\n      visitReversed[at] = w.reversed[s];\n      pos += node < declared ? n.lengths[node] : 0;\n      if (prev >= 0) {\n        const list = listOf(prev, node);\n        if (list >= 0 && lastWalk[list] !== p) {\n          lastWalk[list] = p;\n          crossedList[crossings] = list;\n          crossedName[crossings++] = edgeNamed;\n        }\n      }\n      prev = node;\n    }\n    paths.push({ ...head, nodeIds });\n    anchorPaths.push({\n      name: visitName,\n      sample: visitSample,\n      start,\n      length: pos - start\n    });\n  }\n  const listNames = namesByList(\n    crossedList.subarray(0, crossings),\n    crossedName,\n    lists,\n    edgeNames\n  );\n  edges.forEach((edge, i) => {\n    const names = listNames[edgeLists[i]];\n    if (names.length > 0) {\n      edge.pathIds = names;\n    }\n  });\n  const walked = drawnWalks.length > 0;\n  return {\n    name,\n    nodes,\n    edges,\n    paths: walked ? paths : void 0,\n    anchorPaths: walked ? anchorPaths : void 0,\n    pathVisits: walked ? new PathVisits({\n      segments: visitOrder.map((node) => n.names[node]),\n      offsets: Int32Array.from(blocks),\n      path: visitPath.subarray(0, blocks.at(-1)),\n      start: visitStart.subarray(0, blocks.at(-1)),\n      reversed: visitReversed.subarray(0, blocks.at(-1)),\n      paths: pathNames,\n      samples: pathSamples\n    }) : void 0,\n    anchoredBy: nodes.some((node) => node.stable) ? \"tags\" : void 0\n  };\n}\nfunction graphTablesGFA({ nodes, links, walks }) {\n  const { names } = nodes;\n  const lines = [\"H\tVN:Z:1.1\"];\n  for (let i = 0; i < nodes.lengths.length; i++) {\n    const ref = nodes.refs[i];\n    const stable = ref < 0 ? \"\" : `\tSN:Z:${nodes.refNames[ref]}\tSO:i:${nodes.starts[i]}\tSR:i:${nodes.ranks[i]}`;\n    lines.push(`S\t${names[i]}\t*\tLN:i:${nodes.lengths[i]}${stable}`);\n  }\n  for (let i = 0; i < links.from.length; i++) {\n    const strands = links.strands[i];\n    lines.push(\n      `L\t${names[links.from[i]]}\t${strands & 1 ? \"-\" : \"+\"}\t${names[links.to[i]]}\t${strands & 2 ? \"-\" : \"+\"}\t0M`\n    );\n  }\n  for (let p = 0; p < walks.names.length; p++) {\n    const name = walks.names[p];\n    const fields = panSNFields(name);\n    const start = walks.starts[p];\n    const end = walks.ends[p];\n    const steps = [];\n    for (let s = walks.offsets[p]; s < walks.offsets[p + 1]; s++) {\n      steps.push([names[walks.steps[s]], walks.reversed[s]]);\n    }\n    lines.push(\n      fields ? `W\t${fields.sample}\t${fields.haplotype}\t${fields.contig}\t${start}\t${end}\t${steps.map(([id, rev]) => (rev ? \"<\" : \">\") + id).join(\"\")}${walkStopTags(walks, p)}` : `P\t${pLineName(name, start, end)}\t${steps.map(([id, rev]) => id + (rev ? \"-\" : \"+\")).join(\",\")}\t*`\n    );\n  }\n  return lines.join(\"\\n\");\n}\n\nexport {\n  tablePath,\n  tableNodeIds,\n  graphFromTables,\n  graphTablesGFA\n};\n", "import {\n  tableNodeIds,\n  tablePath\n} from \"./chunk-7L7MN2OM.js\";\nimport {\n  gapParts\n} from \"./chunk-LG2UK4MB.js\";\nimport {\n  pathOrigin\n} from \"./chunk-3YBP46PB.js\";\nimport {\n  groupBy\n} from \"./chunk-BSOZW3FC.js\";\nimport {\n  panSNContig,\n  panSNSample\n} from \"./chunk-2JL2JVZ2.js\";\n\n// src/layout/walkRowRuns.ts\nvar RUN_ON_REFERENCE = 1;\nvar RUN_REVERSED = 2;\nvar RUN_GAP = 4;\nvar GAP_CAUSES = [\n  void 0,\n  \"missing\",\n  \"elsewhere\",\n  \"unknown\",\n  \"abridged\"\n];\nvar CAUSE_SHIFT = 3;\nvar causeFlags = (cause) => GAP_CAUSES.indexOf(cause) << CAUSE_SHIFT;\nfunction referenceOf(names, referencePath, rankZero) {\n  return referencePath !== void 0 && names.includes(referencePath) ? referencePath : names.find((n) => rankZero.has(n)) ?? names[0];\n}\nfunction referenceWalkName(graph) {\n  return referenceOf(\n    (graph.paths ?? []).map((p) => pathOrigin(p.name).name),\n    graph.referencePath,\n    new Set(\n      graph.nodes.flatMap(\n        (n) => n.stable?.rank === 0 ? [n.stable.refName] : []\n      )\n    )\n  );\n}\nfunction graphPieces(graph) {\n  const index = /* @__PURE__ */ new Map();\n  const names = [];\n  const lengths = [];\n  const indexOf = (id) => {\n    let i = index.get(id);\n    if (i === void 0) {\n      i = names.length;\n      index.set(id, i);\n      names.push(id);\n      lengths.push(0);\n    }\n    return i;\n  };\n  for (const node of graph.nodes) {\n    lengths[indexOf(node.id)] = node.length;\n  }\n  const heads = graph.paths ?? [];\n  const from = new Int32Array(heads.length);\n  const to = new Int32Array(heads.length);\n  const steps = [];\n  heads.forEach((path, p) => {\n    from[p] = steps.length;\n    for (const id of path.nodeIds) {\n      steps.push(indexOf(id));\n    }\n    to[p] = steps.length;\n  });\n  return {\n    heads,\n    from,\n    to,\n    steps: Int32Array.from(steps),\n    lengths: Int32Array.from(lengths),\n    names,\n    reference: referenceWalkName(graph)\n  };\n}\nfunction tablePieces(tables, referencePath, visits) {\n  const { nodes: n, walks: w } = tables;\n  const kept = [];\n  for (let p = 0; p < w.names.length; p++) {\n    if (w.offsets[p + 1] > w.offsets[p]) {\n      kept.push(p);\n    }\n  }\n  const heads = kept.map((p) => tablePath(w, p));\n  const rankZero = /* @__PURE__ */ new Set();\n  for (let i = 0; i < n.lengths.length; i++) {\n    if (n.refs[i] >= 0 && n.ranks[i] === 0) {\n      rankZero.add(n.refNames[n.refs[i]]);\n    }\n  }\n  return {\n    heads,\n    from: Int32Array.from(kept, (p) => w.offsets[p]),\n    to: Int32Array.from(kept, (p) => w.offsets[p + 1]),\n    steps: w.steps,\n    lengths: n.lengths,\n    // a visit names its node as the Graph does, which costs a pass over the\n    // steps\n    names: visits ? tableNodeIds(tables) : n.names,\n    reference: referenceOf(\n      heads.map((h) => pathOrigin(h.name).name),\n      referencePath,\n      rankZero\n    )\n  };\n}\nfunction sampleOf(path) {\n  return path.sample ?? panSNSample(path.name);\n}\nfunction labelOf(path) {\n  return path.haplotype !== void 0 && path.sample !== void 0 ? `${path.sample}#${path.haplotype}` : sampleOf(path);\n}\nvar Columns = class {\n  constructor(width) {\n    this.offsets = [0];\n    this.values = Array.from({ length: width }, () => []);\n  }\n  get length() {\n    return this.values[0].length;\n  }\n  push(a, b, c, d, e) {\n    const v = this.values;\n    v[0].push(a);\n    v[1].push(b);\n    v[2].push(c);\n    v[3].push(d);\n    if (e !== void 0) {\n      v[4].push(e);\n    }\n  }\n  endRow() {\n    this.offsets.push(this.length);\n  }\n  // the rows in `order`, column i in the array `make[i]` makes\n  reorder(order, make) {\n    const offsets = new Uint32Array(order.length + 1);\n    order.forEach((row, i) => {\n      offsets[i + 1] = offsets[i] + this.offsets[row + 1] - this.offsets[row];\n    });\n    const columns = make.map((m, c) => {\n      const from = this.values[c];\n      const out = m(this.length);\n      let at = 0;\n      for (const row of order) {\n        for (let k = this.offsets[row]; k < this.offsets[row + 1]; k++) {\n          out[at++] = from[k];\n        }\n      }\n      return out;\n    });\n    return { offsets, columns };\n  }\n};\nvar float64 = (n) => new Float64Array(n);\nfunction walkRowRuns(source, region, o = {}) {\n  const {\n    heads,\n    from,\n    to,\n    steps: all,\n    lengths,\n    names,\n    reference\n  } = \"walks\" in source ? tablePieces(source, o.referencePath, o.visits) : graphPieces(source);\n  const declared = lengths.length;\n  const lengthOf = (node) => node < declared ? lengths[node] : 0;\n  const nameOf = (p) => pathOrigin(heads[p].name).name;\n  const startOf = (p) => heads[p].start;\n  const byStart = (a, b) => (startOf(a) ?? 0) - (startOf(b) ?? 0);\n  const pieceIds = heads.map((_, p) => p);\n  const referencePieces = pieceIds.filter((p) => nameOf(p) === reference).sort(byStart);\n  const first = referencePieces[0];\n  const others = pieceIds.filter((p) => nameOf(p) !== reference);\n  if (first === void 0 || others.length === 0) {\n    return void 0;\n  }\n  const walks = groupBy(others, nameOf);\n  const spanStart = new Float64Array(names.length).fill(Number.NaN);\n  const spanEnd = new Float64Array(names.length);\n  const revisits = /* @__PURE__ */ new Map();\n  let reachesBefore = false;\n  let reachesAfter = false;\n  const cut = region && region.end > region.start ? region : void 0;\n  for (const piece of referencePieces) {\n    let pos = startOf(piece) ?? 0;\n    for (let s = from[piece], stop = to[piece]; s < stop; s++) {\n      const node = all[s];\n      const len = lengthOf(node);\n      if (!Number.isNaN(spanStart[node])) {\n        const starts = revisits.get(node);\n        if (starts) {\n          starts.push(pos);\n        } else {\n          revisits.set(node, [spanStart[node], pos]);\n        }\n      } else {\n        spanStart[node] = pos;\n        spanEnd[node] = pos + len;\n        if (cut) {\n          reachesBefore ||= pos + len <= cut.start;\n          reachesAfter ||= pos >= cut.end;\n        }\n      }\n      pos += len;\n    }\n  }\n  const flanked = cut === void 0 || reachesBefore && reachesAfter;\n  const runs = new Columns(5);\n  const chunks = [];\n  const chunkIndex = /* @__PURE__ */ new Map();\n  const chunkOf = (chunk2) => {\n    if (!chunk2) {\n      return -1;\n    }\n    const key = `${chunk2.refName}:${chunk2.start}`;\n    let i = chunkIndex.get(key);\n    if (i === void 0) {\n      i = chunks.length;\n      chunkIndex.set(key, i);\n      chunks.push(chunk2);\n    }\n    return i;\n  };\n  const visits = o.visits ? new Columns(4) : void 0;\n  let steps = new Int32Array(0);\n  let stepStart = new Float64Array(0);\n  const rowOf = (pieces) => {\n    const head = heads[pieces[0]];\n    const ordered = [...pieces].sort(byStart);\n    let count = ordered.length - 1;\n    let abridgedSteps = 0;\n    for (const piece of ordered) {\n      count += to[piece] - from[piece] + (heads[piece].abridged ? 1 : 0);\n      abridgedSteps += heads[piece].abridged?.steps ?? 0;\n    }\n    if (count > steps.length) {\n      steps = new Int32Array(count * 2);\n      stepStart = new Float64Array(count * 2);\n    }\n    let length = 0;\n    let unplaced = false;\n    let end;\n    let previous;\n    const partsAt = /* @__PURE__ */ new Map();\n    for (const piece of ordered) {\n      const start2 = startOf(piece);\n      if (start2 === void 0 || end !== void 0 && start2 < end) {\n        unplaced = true;\n      }\n      if (end !== void 0 && start2 !== void 0 && start2 > end) {\n        partsAt.set(\n          length,\n          gapParts(\n            start2 - end,\n            previous === void 0 ? void 0 : heads[previous].after,\n            heads[piece].before\n          )\n        );\n        steps[length] = -(start2 - end);\n        stepStart[length++] = end;\n      }\n      let pos = start2 ?? 0;\n      const abridged = heads[piece].abridged;\n      for (let s = from[piece], stop2 = to[piece]; s < stop2; s++) {\n        const node = all[s];\n        const bp3 = abridged ? abridged.bp - (pos - (start2 ?? 0)) - lengthOf(node) : 0;\n        if (bp3 > 0 && s === stop2 - 1 && s > from[piece]) {\n          partsAt.set(length, [{ bp: bp3, cause: \"abridged\" }]);\n          steps[length] = -bp3;\n          stepStart[length++] = pos;\n          pos += bp3;\n        }\n        steps[length] = node;\n        stepStart[length++] = pos;\n        pos += lengthOf(node);\n      }\n      end = start2 === void 0 ? void 0 : pos;\n      previous = piece;\n    }\n    const onReference = (i) => i >= 0 && i < length && steps[i] >= 0 && !Number.isNaN(spanStart[steps[i]]);\n    const stepEnd = (i) => {\n      const id = steps[i];\n      return stepStart[i] + (id < 0 ? -id : lengthOf(id));\n    };\n    const partialSide = (i0, i1) => {\n      const flank = i0 >= 0 ? i0 : i1;\n      let near = -1;\n      for (let d = 1; near < 0 && d < length; d++) {\n        near = [flank - d, flank + d].find(onReference) ?? -1;\n      }\n      if (near < 0) {\n        return void 0;\n      }\n      const forward = near > flank === spanStart[steps[near]] > spanStart[steps[flank]];\n      const after = forward === (flank === i0);\n      const last2 = after ? length - 1 : 0;\n      const contigEnds = onReference(last2);\n      const stop2 = {\n        contigEnds,\n        shortBp: contigEnds ? Math.max(\n          0,\n          cut.start - spanEnd[steps[last2]],\n          spanStart[steps[last2]] - cut.end\n        ) : 0\n      };\n      return {\n        stop: stop2,\n        lo: after ? flank + 1 : 0,\n        hi: after ? length : flank,\n        backward: !forward,\n        axisStart: forward ? after ? stepEnd(flank) : stepStart[0] : after ? stepEnd(length - 1) : stepStart[flank]\n      };\n    };\n    let lo = 0;\n    let hi = length;\n    let backward = false;\n    let complete = true;\n    let flankFrom = -1;\n    let flankTo = -1;\n    let axisStart;\n    let stop;\n    if (cut && flanked) {\n      let i0 = -1;\n      let i1 = -1;\n      let bestEnd = -Infinity;\n      let bestStart = Infinity;\n      for (let i = 0; i < length; i++) {\n        const id = steps[i];\n        if (id >= 0 && !Number.isNaN(spanStart[id])) {\n          if (spanEnd[id] <= cut.start && spanEnd[id] > bestEnd) {\n            bestEnd = spanEnd[id];\n            i0 = i;\n          }\n          if (spanStart[id] >= cut.end && spanStart[id] < bestStart) {\n            bestStart = spanStart[id];\n            i1 = i;\n          }\n        }\n      }\n      if (i0 < 0 || i1 < 0) {\n        complete = false;\n        const inside = i0 >= 0 || i1 >= 0 ? partialSide(i0, i1) : void 0;\n        if (inside) {\n          ;\n          ({ lo, hi, backward, axisStart, stop } = inside);\n        }\n      } else {\n        lo = Math.min(i0, i1) + 1;\n        hi = Math.max(i0, i1);\n        backward = i0 > i1;\n        flankFrom = i0;\n        flankTo = i1;\n      }\n    }\n    const contig = head.contig ?? panSNContig(pathOrigin(head.name).name);\n    const axis = unplaced || length === 0 ? void 0 : axisStart !== void 0 ? { contig, start: axisStart, reversed: backward } : flankFrom < 0 ? { contig, start: stepStart[0], reversed: false } : flankFrom < flankTo ? { contig, start: stepEnd(flankFrom), reversed: false } : { contig, start: stepStart[flankFrom], reversed: true };\n    let bp2 = 0;\n    let offReferenceBp = 0;\n    let gapBp = 0;\n    let step = 0;\n    let last = -1;\n    let lastFlags = 0;\n    let lastRef = Number.NaN;\n    let cursor = Number.NaN;\n    const placeOf = (id) => {\n      const starts = revisits.get(id);\n      if (!starts || Number.isNaN(cursor)) {\n        return spanStart[id];\n      }\n      const len = lengthOf(id);\n      let best = starts[0];\n      let bestGap = Infinity;\n      for (const start2 of starts) {\n        const gap = Math.min(\n          Math.abs(start2 - cursor),\n          Math.abs(start2 + len - cursor)\n        );\n        if (gap < bestGap) {\n          best = start2;\n          bestGap = gap;\n        }\n      }\n      return best;\n    };\n    const [, runBp, runRef, runFlags] = runs.values;\n    for (let k = lo; k < hi; k++) {\n      const index = backward ? hi - 1 - (k - lo) : k;\n      const id = steps[index];\n      if (id < 0) {\n        const parts = partsAt.get(index);\n        for (const part of backward ? [...parts].reverse() : parts) {\n          runs.push(\n            bp2,\n            part.bp,\n            Number.NaN,\n            RUN_GAP | causeFlags(part.cause),\n            chunkOf(part.chunk)\n          );\n          bp2 += part.bp;\n        }\n        last = runs.length - 1;\n        lastFlags = RUN_GAP;\n        lastRef = Number.NaN;\n        gapBp += -id;\n        step = 0;\n        continue;\n      }\n      const len = lengthOf(id);\n      const at = placeOf(id);\n      const on = !Number.isNaN(at);\n      visits?.push(id, bp2, len, on ? 1 : 0);\n      const placed = last >= 0 && !Number.isNaN(lastRef);\n      const forward = on && placed && step >= 0 && lastRef + (runBp[last] ?? 0) === at;\n      const back = on && placed && step <= 0 && at + len === lastRef;\n      if (!on && last >= 0 && !(lastFlags & (RUN_ON_REFERENCE | RUN_GAP))) {\n        runBp[last] += len;\n      } else if (forward || back) {\n        runBp[last] += len;\n        if (!forward) {\n          lastRef = at;\n          runRef[last] = at;\n          lastFlags |= RUN_REVERSED;\n          runFlags[last] = lastFlags;\n        }\n        step = forward ? 1 : -1;\n      } else {\n        lastFlags = on ? RUN_ON_REFERENCE : 0;\n        lastRef = on ? at : Number.NaN;\n        runs.push(bp2, len, lastRef, lastFlags, -1);\n        last = runs.length - 1;\n        step = 0;\n      }\n      bp2 += len;\n      if (on) {\n        cursor = step < 0 ? at : at + len;\n      } else {\n        offReferenceBp += len;\n      }\n    }\n    runs.endRow();\n    visits?.endRow();\n    return {\n      name: head.name,\n      label: labelOf(head),\n      sample: sampleOf(head),\n      haplotype: head.haplotype,\n      bp: bp2,\n      offReferenceBp,\n      gapBp,\n      complete,\n      stop,\n      axis,\n      ...abridgedSteps > 0 ? { abridgedSteps } : {}\n    };\n  };\n  const referenceRow = rowOf(referencePieces);\n  const rows = [...walks.values()].map((pieces, i) => ({\n    meta: rowOf(pieces),\n    row: i + 1\n  }));\n  rows.sort(\n    (a, b) => Number(b.meta.complete) - Number(a.meta.complete) || b.meta.bp - a.meta.bp || a.meta.label.localeCompare(b.meta.label)\n  );\n  const order = [0, ...rows.map((r) => r.row)];\n  const { offsets, columns } = runs.reorder(order, [\n    float64,\n    float64,\n    float64,\n    (n) => new Uint8Array(n),\n    (n) => new Int32Array(n)\n  ]);\n  const [start, bp, referenceStart, flags, chunk] = columns;\n  return {\n    origin: cut ? cut.start : startOf(first) ?? 0,\n    rows: [referenceRow, ...rows.map((r) => r.meta)],\n    offsets,\n    start,\n    bp,\n    referenceStart,\n    flags,\n    chunk,\n    chunks,\n    visits: visits && visitColumns(visits, order, names)\n  };\n}\nfunction visitColumns(visits, order, names) {\n  const { offsets, columns } = visits.reorder(order, [\n    (n) => new Int32Array(n),\n    float64,\n    float64,\n    (n) => new Uint8Array(n)\n  ]);\n  const [node, start, bp, onReference] = columns;\n  return { offsets, node, start, bp, onReference, names };\n}\nfunction runAt(t, k) {\n  const f = t.flags[k];\n  const run = {\n    start: t.start[k],\n    bp: t.bp[k],\n    onReference: (f & RUN_ON_REFERENCE) !== 0\n  };\n  if (f & RUN_GAP) {\n    run.gap = true;\n    const cause = GAP_CAUSES[f >> CAUSE_SHIFT & 7];\n    if (cause) {\n      run.cause = cause;\n    }\n    const chunk = t.chunks[t.chunk[k]];\n    if (chunk) {\n      run.chunk = chunk;\n    }\n  } else {\n    run.referenceStart = Number.isNaN(t.referenceStart[k]) ? void 0 : t.referenceStart[k];\n  }\n  if (f & RUN_REVERSED) {\n    run.reversed = true;\n  }\n  return run;\n}\nfunction visitsOf(v, row) {\n  const out = [];\n  for (let k = v.offsets[row]; k < v.offsets[row + 1]; k++) {\n    out.push({\n      node: v.names[v.node[k]],\n      start: v.start[k],\n      bp: v.bp[k],\n      onReference: v.onReference[k] === 1\n    });\n  }\n  return out;\n}\nfunction walkRowsOf(t, unit) {\n  const rows = t.rows.map((meta, i) => {\n    const runs = [];\n    for (let k = t.offsets[i]; k < t.offsets[i + 1]; k++) {\n      runs.push(runAt(t, k));\n    }\n    return {\n      ...meta,\n      runs,\n      visits: t.visits && visitsOf(t.visits, i)\n    };\n  });\n  return { origin: t.origin, unit, reference: rows[0], rows: rows.slice(1) };\n}\n\nexport {\n  referenceWalkName,\n  walkRowRuns,\n  runAt,\n  walkRowsOf\n};\n"],
-  "mappings": "kHACA,IAAIA,GAAiB,KACjBC,GAAe,KACfC,GAAa,CAAC,YAAa,QAAS,KAAK,EACzCC,GAAiB,CACnB,QAAS,mBACT,UAAW,2BACX,QAAS,qBACT,SAAU,4BACZ,EACIC,GAAe,iCACnB,SAASC,GAASC,EAAIC,EAAOC,EAAQ,CACnC,GAAI,CAACD,GAAS,CAACC,EACb,MAAO,CAAC,CAAE,GAAAF,CAAG,CAAC,EAEhB,IAAMG,EAAO,KAAK,IAAIF,GAAO,SAAW,EAAGD,CAAE,EACvCI,EAAQ,KAAK,IAAIF,GAAQ,SAAW,EAAGF,EAAKG,CAAI,EAClDE,EAAOL,EAAKG,EAAOC,EACjBE,EAAOL,GAAO,OAAS,QAAU,KAAK,IAAIA,EAAM,GAAII,CAAI,EAAI,EAClEA,GAAQC,EACR,IAAMC,EAAQL,GAAQ,OAAS,QAAU,KAAK,IAAIA,EAAO,GAAIG,CAAI,EAAI,EACrEA,GAAQE,EACR,IAAMC,EAAY,CAACP,EAAOC,CAAM,EAAE,KAAMO,GAAMA,GAAG,OAAS,WAAW,EAQrE,MAPc,CACZ,CAAE,GAAIN,CAAK,EACX,CAAE,GAAIG,EAAM,MAAO,SAAU,EAC7BE,GAAW,OAAS,YAAc,CAAE,GAAIH,EAAM,MAAO,YAAa,MAAOG,EAAU,KAAM,EAAI,CAAE,GAAIH,EAAM,MAAO,SAAU,EAC1H,CAAE,GAAIE,EAAO,MAAO,SAAU,EAC9B,CAAE,GAAIH,CAAM,CACd,EACa,OAAQM,GAASA,EAAK,GAAK,CAAC,CAC3C,CACA,SAASC,GAAOC,EAAOC,EAAG,CACxB,IAAMb,EAAKY,EAAM,GAAGC,CAAC,EACfC,EAAMF,EAAM,UAAUC,CAAC,EAC7B,OAAOE,GACLH,EAAM,UAAUA,EAAM,MAAMC,CAAC,CAAC,EAC9B,OAAO,MAAMb,CAAE,EAAI,OAASA,EAC5BY,EAAM,QAAQC,CAAC,EACfC,EAAM,EAAI,OAAS,CAAE,QAASF,EAAM,cAAcE,CAAG,EAAG,MAAOF,EAAM,YAAYC,CAAC,CAAE,CACtF,CACF,CACA,SAASE,GAAOC,EAAMhB,EAAIiB,EAASC,EAAO,CACxC,IAAMC,EAAMF,EAAU,EAAI,CAAE,QAAAA,CAAQ,EAAI,CAAC,EACzC,OAAID,IAAS,aAAeE,EACnB,CAAE,KAAAF,EAAM,MAAAE,EAAO,GAAGlB,IAAO,OAAS,CAAC,EAAI,CAAE,GAAAA,CAAG,EAAG,GAAGmB,CAAI,EAE3DH,IAAS,SAAWhB,IAAO,OACtB,CAAE,KAAAgB,EAAM,GAAAhB,EAAI,GAAGkB,EAAQ,CAAE,MAAAA,CAAM,EAAI,CAAC,EAAG,GAAGC,CAAI,EAEhDH,IAAS,MAAQ,CAAE,KAAAA,EAAM,GAAGG,CAAI,EAAI,MAC7C,CAcA,SAASC,GAAaC,EAAO,CAC3B,GAAM,CAACC,EAAM,GAAGC,CAAM,EAAIF,EAAM,MAAM,GAAG,EACrCG,EACAC,EAAU,EACVC,EACJ,QAAWC,KAASJ,EAClB,GAAII,EAAM,WAAW,KAAK,EACxBH,EAAK,CAACG,EAAM,MAAM,CAAC,UACVA,EAAM,WAAW,UAAU,EACpCF,EAAU,CAACE,EAAM,MAAM,CAAC,UACfA,EAAM,WAAW,QAAQ,EAAG,CACrC,IAAMC,EAAKD,EAAM,YAAY,GAAG,EAChCD,EAAQ,CAAE,QAASC,EAAM,MAAM,EAAGC,CAAE,EAAG,MAAO,CAACD,EAAM,MAAMC,EAAK,CAAC,CAAE,CACrE,CAEF,OAAOC,GAAOP,EAAME,EAAIC,EAASC,CAAK,CACxC,CACA,SAASI,GAAWC,EAAQC,EAAO,CACjC,MAAO,CACL,GAAGD,EAAS,CAAE,OAAAA,CAAO,EAAI,CAAC,EAC1B,GAAGC,EAAQ,CAAE,MAAAA,CAAM,EAAI,CAAC,CAC1B,CACF,CACA,SAASC,GAAeC,EAAM,CAC5B,IAAMH,EAASG,EAAKC,EAAc,EAC5BH,EAAQE,EAAKE,EAAY,EAC/B,OAAON,GACL,OAAOC,GAAW,SAAWX,GAAaW,CAAM,EAAI,OACpD,OAAOC,GAAU,SAAWZ,GAAaY,CAAK,EAAI,MACpD,CACF,CAcA,IAAIK,GAAc,KAAM,CACtB,aAAc,CACZ,KAAK,MAAQ,CAAC,EACd,KAAK,GAAK,CAAC,EACX,KAAK,QAAU,CAAC,EAChB,KAAK,UAAY,CAAC,EAClB,KAAK,YAAc,CAAC,EACpB,KAAK,cAAgB,CAAC,EACtB,KAAK,SAA2B,IAAI,GACtC,CACA,KAAKC,EAAM,CACT,KAAK,MAAM,KAAKC,GAAW,QAAQD,EAAK,IAAI,CAAC,EAC7C,KAAK,GAAG,KAAK,OAAQA,GAAQA,EAAK,KAAO,OAASA,EAAK,GAAK,GAAG,EAC/D,KAAK,QAAQ,KAAKA,EAAK,SAAW,CAAC,EACnC,IAAME,EAAQ,UAAWF,EAAOA,EAAK,MAAQ,OAC7C,GAAIE,EAAO,CACT,IAAIC,EAAM,KAAK,SAAS,IAAID,EAAM,OAAO,EACrCC,IAAQ,SACVA,EAAM,KAAK,cAAc,OACzB,KAAK,SAAS,IAAID,EAAM,QAASC,CAAG,EACpC,KAAK,cAAc,KAAKD,EAAM,OAAO,GAEvC,KAAK,UAAU,KAAKC,CAAG,EACvB,KAAK,YAAY,KAAKD,EAAM,KAAK,CACnC,MACE,KAAK,UAAU,KAAK,EAAE,EACtB,KAAK,YAAY,KAAK,GAAG,CAE7B,CACA,OAAQ,CACN,MAAO,CACL,MAAO,WAAW,KAAK,KAAK,KAAK,EACjC,UAAW,CAAC,GAAGD,EAAU,EACzB,GAAI,aAAa,KAAK,KAAK,EAAE,EAC7B,QAAS,aAAa,KAAK,KAAK,OAAO,EACvC,UAAW,WAAW,KAAK,KAAK,SAAS,EACzC,YAAa,aAAa,KAAK,KAAK,WAAW,EAC/C,cAAe,KAAK,aACtB,CACF,CACF,ECvIA,SAASG,GAAUC,EAAMC,EAAOC,EAAK,CACnC,OAAOD,IAAU,EAAID,EAAO,GAAGA,CAAI,IAAIC,CAAK,IAAIC,CAAG,EACrD,CACA,SAASC,GAAUC,EAAGC,EAAG,CACvB,IAAMC,EAAWF,EAAE,MAAMC,CAAC,EACpBE,EAASC,GAAYF,CAAQ,EAC7BL,EAAQG,EAAE,OAAOC,CAAC,EAClBI,EAAQL,EAAE,gBAAgBC,CAAC,GAAK,OAAO,IACvCK,EAAW,OAAO,MAAMD,CAAK,EAAI,CAAC,EAAI,CAAE,SAAU,CAAE,MAAAA,EAAO,GAAIL,EAAE,aAAaC,CAAC,GAAK,CAAE,CAAE,EAC9F,OAAOE,EAAS,CACd,KAAM,GAAGA,EAAO,MAAM,IAAIA,EAAO,SAAS,IAAIA,EAAO,MAAM,GAC3D,MAAAN,EACA,GAAGM,EACH,GAAGI,GACDP,EAAE,QAAUQ,GAAOR,EAAE,OAAQC,CAAC,EAC9BD,EAAE,OAASQ,GAAOR,EAAE,MAAOC,CAAC,CAC9B,EACA,GAAGK,CACL,EAAI,CAAE,KAAMX,GAAUO,EAAUL,EAAOG,EAAE,KAAKC,CAAC,CAAC,EAAG,MAAAJ,CAAM,CAC3D,CACA,SAASY,GAAYC,EAAOC,EAAOC,EAAWC,EAAW,CACvD,IAAMC,EAAS,IAAI,WAAWF,EAAY,CAAC,EAC3C,QAAWG,KAAQL,EACjBI,EAAOC,EAAO,CAAC,IAEjB,QAASC,EAAI,EAAGA,EAAIJ,EAAWI,IAC7BF,EAAOE,EAAI,CAAC,GAAKF,EAAOE,CAAC,EAE3B,IAAMC,EAAOH,EAAO,MAAM,EAAGF,CAAS,EAChCM,EAAU,IAAI,WAAWR,EAAM,MAAM,EAC3CA,EAAM,QAAQ,CAACK,EAAMC,IAAM,CACzBE,EAAQD,EAAKF,CAAI,GAAG,EAAIJ,EAAMK,CAAC,CACjC,CAAC,EACD,IAAMG,EAAS,IAAI,WAAWN,EAAU,MAAM,EAAE,KAAK,EAAE,EACvD,OAAO,MAAM,KAAK,CAAE,OAAQD,CAAU,EAAG,CAACQ,EAAGL,IAAS,CACpD,IAAMM,EAAM,CAAC,EACb,QAASL,EAAIF,EAAOC,CAAI,EAAGC,EAAIF,EAAOC,EAAO,CAAC,EAAGC,IAAK,CACpD,IAAMM,EAAIJ,EAAQF,CAAC,EACfG,EAAOG,CAAC,IAAMP,IAChBI,EAAOG,CAAC,EAAIP,EACZM,EAAI,KAAKR,EAAUS,CAAC,CAAC,EAEzB,CACA,OAAOD,CACT,CAAC,CACH,CACA,SAASE,GAAa,CAAE,MAAOC,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAG0B,EAAY,CAClE,IAAMC,EAAY,IAAI,WAAWH,EAAE,MAAM,MAAM,EACzCI,EAAQ,CAACC,EAAMC,IAAa,CAC5BH,EAAUE,CAAI,IAAM,IACtBF,EAAUE,CAAI,EAAIC,EAAW,EAAI,EAErC,EACA,QAASd,EAAI,EAAGA,EAAIS,EAAE,KAAK,OAAQT,IACjCY,EAAMH,EAAE,KAAKT,CAAC,EAAGS,EAAE,QAAQT,CAAC,EAAI,CAAC,EACjCY,EAAMH,EAAE,GAAGT,CAAC,EAAGS,EAAE,QAAQT,CAAC,EAAI,CAAC,EAEjC,IAAMe,EAAY/B,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,EAC/C,QAASgC,EAAI,EAAGA,EAAID,EAAWC,IAAK,CAClC,IAAMH,EAAO7B,EAAE,MAAMgC,CAAC,EACtBJ,EAAMC,EAAM7B,EAAE,SAASgC,CAAC,CAAC,EACrBN,GACFA,EAAWG,CAAI,GAEnB,CACA,OAAOL,EAAE,MAAM,IACb,CAACS,EAASjB,IAAM,GAAGiB,CAAO,GAAGN,EAAUX,CAAC,IAAM,EAAI,IAAM,GAAG,EAC7D,CACF,CACA,SAASkB,GAAgB,CAAE,MAAOV,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAGJ,EAAO,eAAgB,CAChF,IAAMuC,EAAQX,EAAE,MAAM,OAChBY,EAAWZ,EAAE,QAAQ,OACrBa,EAAa,CAAC,EACpB,QAASpC,EAAI,EAAGA,EAAID,EAAE,MAAM,OAAQC,IAC9BD,EAAE,QAAQC,EAAI,CAAC,EAAID,EAAE,QAAQC,CAAC,GAChCoC,EAAW,KAAKpC,CAAC,EAGrB,IAAMyB,EAAa,IAAI,WAAWS,CAAK,EACjCG,EAAMf,GAAa,CAAE,MAAOC,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAG0B,CAAU,EAC/Da,EAAQ,CAAC,EACf,QAASvB,EAAI,EAAGA,EAAIoB,EAAUpB,IAAK,CACjC,IAAMwB,EAAMhB,EAAE,KAAKR,CAAC,EACpBuB,EAAM,KAAK,CACT,GAAID,EAAItB,CAAC,EACT,KAAMQ,EAAE,MAAMR,CAAC,EACf,OAAQQ,EAAE,QAAQR,CAAC,EACnB,MAAO,KAAK,IAAIU,EAAWV,CAAC,EAAG,CAAC,EAChC,OAAQwB,EAAM,EAAI,OAAS,CACzB,QAAShB,EAAE,SAASgB,CAAG,EACvB,MAAOhB,EAAE,OAAOR,CAAC,EACjB,KAAMQ,EAAE,MAAMR,CAAC,CACjB,EACA,QAAS,MACX,CAAC,CACH,CACA,IAAMyB,EAAQ,CAAC,EACTC,EAAa,IAAI,MAAMP,CAAK,EAC5BQ,EAAW,CAAC,EAAGC,IAAM,CACzB,IAAMC,EAAOH,EAAW,CAAC,EACzB,GAAIG,GACF,QAASC,EAAI,EAAGA,EAAID,EAAK,OAAQC,GAAK,EACpC,GAAID,EAAKC,CAAC,IAAMF,EACd,OAAOC,EAAKC,EAAI,CAAC,EAKzB,EACMC,EAAU,CAAC,EAAGH,EAAG7B,IAAS,CAC9B,IAAM8B,EAAOH,EAAW,CAAC,EACrBG,EACFA,EAAK,KAAKD,EAAG7B,CAAI,EAEjB2B,EAAW,CAAC,EAAI,CAACE,EAAG7B,CAAI,CAE5B,EACMiC,GAAY,CAAC,EACftC,EAAQ,EACZ,QAASM,EAAI,EAAGA,EAAIS,EAAE,KAAK,OAAQT,IAAK,CACtC,IAAMiC,EAAIxB,EAAE,KAAKT,CAAC,EACZ4B,EAAInB,EAAE,GAAGT,CAAC,EAChByB,EAAM,KAAK,CACT,KAAMH,EAAIW,CAAC,EACX,GAAIX,EAAIM,CAAC,EACT,WAAYnB,EAAE,QAAQT,CAAC,EAAI,EAAI,IAAM,IACrC,SAAUS,EAAE,QAAQT,CAAC,EAAI,EAAI,IAAM,GACrC,CAAC,EACD,IAAID,EAAO4B,EAASM,EAAGL,CAAC,EACpB7B,IAAS,SACXA,EAAOL,IACPqC,EAAQE,EAAGL,EAAG7B,CAAI,EAClBgC,EAAQH,EAAGK,EAAGlC,CAAI,GAEpBiC,GAAU,KAAKjC,CAAI,CACrB,CACA,IAAMmC,EAAY,IAAI,WAAWf,EAAQ,CAAC,EAC1C,QAAS,EAAI,EAAG,EAAIA,EAAO,IACzBe,EAAU,EAAI,CAAC,EAAIA,EAAU,CAAC,GAAKR,EAAW,CAAC,GAAG,QAAU,GAAK,EAEnE,IAAMS,GAAe,IAAI,WAAWD,EAAUf,CAAK,CAAC,EAC9CiB,GAAe,IAAI,WAAWF,EAAUf,CAAK,CAAC,EACpDO,EAAW,QAAQ,CAACG,EAAMI,IAAM,CAC9B,QAASH,EAAI,EAAGA,EAAID,EAAK,OAAQC,GAAK,EACpCK,GAAaD,EAAUD,CAAC,EAAIH,EAAI,CAAC,EAAID,EAAKC,CAAC,EAC3CM,GAAaF,EAAUD,CAAC,EAAIH,EAAI,CAAC,EAAID,EAAKC,EAAI,CAAC,CAEnD,CAAC,EACD,IAAMO,GAAS,CAAC,EAAGT,IAAM,CACvB,QAASE,EAAII,EAAU,CAAC,EAAGJ,EAAII,EAAU,EAAI,CAAC,EAAGJ,IAC/C,GAAIK,GAAaL,CAAC,IAAMF,EACtB,OAAOQ,GAAaN,CAAC,EAGzB,MAAO,EACT,EACMQ,EAA4B,IAAI,IAChCzC,EAAY,CAAC,EACb0C,EAAc,IAAI,WAAWvD,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,CAAC,EAC3DwD,GAAc,IAAI,WAAWD,EAAY,MAAM,EACjDE,EAAY,EACVC,EAAW,IAAI,WAAWhD,CAAK,EAAE,KAAK,EAAE,EACxCiD,GAAQ,CAAC,EACTC,EAAc,CAAC,EACfC,EAAa7D,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,EAC1C8D,GAAY,IAAI,WAAWD,CAAU,EACrCE,GAAa,IAAI,aAAaF,CAAU,EACxCG,EAAgB,IAAI,WAAWH,CAAU,EACzC5C,EAAO,IAAI,WAAWkB,CAAK,EAAE,KAAK,EAAE,EACpC8B,EAAa,CAAC,EACdC,EAAS,CAAC,CAAC,EACXC,GAAc,CAAC,EACfC,GAAgC,IAAI,IACpCC,GAAY,CAAC,EACnB,QAAWpE,KAAKoC,EAAY,CAC1B,IAAMiC,EAAOvE,GAAUC,EAAGC,CAAC,EACrB,CAAE,MAAAJ,EAAO,KAAM0E,CAAS,EAAID,EAC5BE,EAAYF,EAAK,SAAW,OAAStE,EAAE,MAAMC,CAAC,EAAIsE,EACpDE,EAAQnB,EAAU,IAAIkB,CAAS,EAC/BC,IAAU,SACZA,EAAQ5D,EAAU,OAClByC,EAAU,IAAIkB,EAAWC,CAAK,EAC9B5D,EAAU,KAAK2D,CAAS,EACxBL,GAAY,KAAKO,GAAYF,CAAS,CAAC,GAEzC,IAAIG,EAAYP,GAAc,IAAIG,CAAQ,EACtCI,IAAc,SAChBA,EAAYN,GAAU,OACtBD,GAAc,IAAIG,EAAUI,CAAS,EACrCN,GAAU,KAAKE,CAAQ,GAEzB,IAAMK,EAAcT,GAAYM,CAAK,EAC/BI,EAAQ7E,EAAE,QAAQC,CAAC,EACnB6E,EAAU,IAAI,MAAM9E,EAAE,QAAQC,EAAI,CAAC,EAAI4E,CAAK,EAC9CE,EAAMlF,EACNmF,EAAO,GACX,QAAShD,EAAI6C,EAAO7C,EAAIhC,EAAE,QAAQC,EAAI,CAAC,EAAG+B,IAAK,CAC7C,IAAMH,EAAO7B,EAAE,MAAMgC,CAAC,EACtB8C,EAAQ9C,EAAI6C,CAAK,EAAIvC,EAAIT,CAAI,EACzBZ,EAAKY,CAAI,IAAM,KACjBZ,EAAKY,CAAI,EAAIqC,EAAO,GAAG,EAAE,EACzBA,EAAO,KAAKjD,EAAKY,CAAI,EAAIH,EAAWG,CAAI,CAAC,EACzCoC,EAAW,KAAKpC,CAAI,GAEtB,IAAMoD,EAAKhE,EAAKY,CAAI,IAKpB,GAJAiC,GAAUmB,CAAE,EAAIR,EAChBV,GAAWkB,CAAE,EAAIF,EACjBf,EAAciB,CAAE,EAAIjF,EAAE,SAASgC,CAAC,EAChC+C,GAAOlD,EAAOO,EAAWZ,EAAE,QAAQK,CAAI,EAAI,EACvCmD,GAAQ,EAAG,CACb,IAAMjE,EAAOsC,GAAO2B,EAAMnD,CAAI,EAC1Bd,GAAQ,GAAK2C,EAAS3C,CAAI,IAAMd,IAClCyD,EAAS3C,CAAI,EAAId,EACjBsD,EAAYE,CAAS,EAAI1C,EACzByC,GAAYC,GAAW,EAAIkB,EAE/B,CACAK,EAAOnD,CACT,CACA8B,GAAM,KAAK,CAAE,GAAGW,EAAM,QAAAQ,CAAQ,CAAC,EAC/BlB,EAAY,KAAK,CACf,KAAMY,EACN,OAAQI,EACR,MAAA/E,EACA,OAAQkF,EAAMlF,CAChB,CAAC,CACH,CACA,IAAMqF,GAAYzE,GAChB8C,EAAY,SAAS,EAAGE,CAAS,EACjCD,GACA9C,EACA2D,EACF,EACA5B,EAAM,QAAQ,CAAC0C,EAAMnE,IAAM,CACzB,IAAML,EAAQuE,GAAUlC,GAAUhC,CAAC,CAAC,EAChCL,EAAM,OAAS,IACjBwE,EAAK,QAAUxE,EAEnB,CAAC,EACD,IAAMyE,GAAS/C,EAAW,OAAS,EACnC,MAAO,CACL,KAAAzC,EACA,MAAA2C,EACA,MAAAE,EACA,MAAO2C,GAASzB,GAAQ,OACxB,YAAayB,GAASxB,EAAc,OACpC,WAAYwB,GAAS,IAAIC,GAAW,CAClC,SAAUpB,EAAW,IAAKpC,GAASL,EAAE,MAAMK,CAAI,CAAC,EAChD,QAAS,WAAW,KAAKqC,CAAM,EAC/B,KAAMJ,GAAU,SAAS,EAAGI,EAAO,GAAG,EAAE,CAAC,EACzC,MAAOH,GAAW,SAAS,EAAGG,EAAO,GAAG,EAAE,CAAC,EAC3C,SAAUF,EAAc,SAAS,EAAGE,EAAO,GAAG,EAAE,CAAC,EACjD,MAAOrD,EACP,QAASsD,EACX,CAAC,EAAI,OACL,WAAY5B,EAAM,KAAMV,GAASA,EAAK,MAAM,EAAI,OAAS,MAC3D,CACF,CC5PA,IAAIyD,GAAmB,EACnBC,GAAe,EACfC,GAAU,EACVC,GAAa,CACf,OACA,UACA,YACA,UACA,UACF,EACIC,GAAc,EACdC,GAAcC,GAAUH,GAAW,QAAQG,CAAK,GAAKF,GACzD,SAASG,GAAYC,EAAOC,EAAeC,EAAU,CACnD,OAAOD,IAAkB,QAAUD,EAAM,SAASC,CAAa,EAAIA,EAAgBD,EAAM,KAAM,GAAME,EAAS,IAAI,CAAC,CAAC,GAAKF,EAAM,CAAC,CAClI,CACA,SAASG,GAAkBC,EAAO,CAChC,OAAOL,IACJK,EAAM,OAAS,CAAC,GAAG,IAAKC,GAAMC,GAAWD,EAAE,IAAI,EAAE,IAAI,EACtDD,EAAM,cACN,IAAI,IACFA,EAAM,MAAM,QACTG,GAAMA,EAAE,QAAQ,OAAS,EAAI,CAACA,EAAE,OAAO,OAAO,EAAI,CAAC,CACtD,CACF,CACF,CACF,CACA,SAASC,GAAYJ,EAAO,CAC1B,IAAMK,EAAwB,IAAI,IAC5BT,EAAQ,CAAC,EACTU,EAAU,CAAC,EACXC,EAAWC,GAAO,CACtB,IAAIC,EAAIJ,EAAM,IAAIG,CAAE,EACpB,OAAIC,IAAM,SACRA,EAAIb,EAAM,OACVS,EAAM,IAAIG,EAAIC,CAAC,EACfb,EAAM,KAAKY,CAAE,EACbF,EAAQ,KAAK,CAAC,GAETG,CACT,EACA,QAAWC,KAAQV,EAAM,MACvBM,EAAQC,EAAQG,EAAK,EAAE,CAAC,EAAIA,EAAK,OAEnC,IAAMC,EAAQX,EAAM,OAAS,CAAC,EACxBY,EAAO,IAAI,WAAWD,EAAM,MAAM,EAClCE,EAAK,IAAI,WAAWF,EAAM,MAAM,EAChCG,EAAQ,CAAC,EACf,OAAAH,EAAM,QAAQ,CAACI,EAAMd,IAAM,CACzBW,EAAKX,CAAC,EAAIa,EAAM,OAChB,QAAWN,KAAMO,EAAK,QACpBD,EAAM,KAAKP,EAAQC,CAAE,CAAC,EAExBK,EAAGZ,CAAC,EAAIa,EAAM,MAChB,CAAC,EACM,CACL,MAAAH,EACA,KAAAC,EACA,GAAAC,EACA,MAAO,WAAW,KAAKC,CAAK,EAC5B,QAAS,WAAW,KAAKR,CAAO,EAChC,MAAAV,EACA,UAAWG,GAAkBC,CAAK,CACpC,CACF,CACA,SAASgB,GAAYC,EAAQpB,EAAeqB,EAAQ,CAClD,GAAM,CAAE,MAAO,EAAG,MAAOC,CAAE,EAAIF,EACzBG,EAAO,CAAC,EACd,QAASnB,EAAI,EAAGA,EAAIkB,EAAE,MAAM,OAAQlB,IAC9BkB,EAAE,QAAQlB,EAAI,CAAC,EAAIkB,EAAE,QAAQlB,CAAC,GAChCmB,EAAK,KAAKnB,CAAC,EAGf,IAAMU,EAAQS,EAAK,IAAKnB,GAAMoB,GAAUF,EAAGlB,CAAC,CAAC,EACvCH,EAA2B,IAAI,IACrC,QAASW,EAAI,EAAGA,EAAI,EAAE,QAAQ,OAAQA,IAChC,EAAE,KAAKA,CAAC,GAAK,GAAK,EAAE,MAAMA,CAAC,IAAM,GACnCX,EAAS,IAAI,EAAE,SAAS,EAAE,KAAKW,CAAC,CAAC,CAAC,EAGtC,MAAO,CACL,MAAAE,EACA,KAAM,WAAW,KAAKS,EAAOnB,GAAMkB,EAAE,QAAQlB,CAAC,CAAC,EAC/C,GAAI,WAAW,KAAKmB,EAAOnB,GAAMkB,EAAE,QAAQlB,EAAI,CAAC,CAAC,EACjD,MAAOkB,EAAE,MACT,QAAS,EAAE,QAGX,MAAOD,EAASI,GAAaL,CAAM,EAAI,EAAE,MACzC,UAAWtB,GACTgB,EAAM,IAAKY,GAAMrB,GAAWqB,EAAE,IAAI,EAAE,IAAI,EACxC1B,EACAC,CACF,CACF,CACF,CACA,SAAS0B,GAAST,EAAM,CACtB,OAAOA,EAAK,QAAUU,GAAYV,EAAK,IAAI,CAC7C,CACA,SAASW,GAAQX,EAAM,CACrB,OAAOA,EAAK,YAAc,QAAUA,EAAK,SAAW,OAAS,GAAGA,EAAK,MAAM,IAAIA,EAAK,SAAS,GAAKS,GAAST,CAAI,CACjH,CACA,IAAIY,GAAU,KAAM,CAClB,YAAYC,EAAO,CACjB,KAAK,QAAU,CAAC,CAAC,EACjB,KAAK,OAAS,MAAM,KAAK,CAAE,OAAQA,CAAM,EAAG,IAAM,CAAC,CAAC,CACtD,CACA,IAAI,QAAS,CACX,OAAO,KAAK,OAAO,CAAC,EAAE,MACxB,CACA,KAAKC,EAAGC,EAAGC,EAAGC,EAAGC,EAAG,CAClB,IAAMC,EAAI,KAAK,OACfA,EAAE,CAAC,EAAE,KAAKL,CAAC,EACXK,EAAE,CAAC,EAAE,KAAKJ,CAAC,EACXI,EAAE,CAAC,EAAE,KAAKH,CAAC,EACXG,EAAE,CAAC,EAAE,KAAKF,CAAC,EACPC,IAAM,QACRC,EAAE,CAAC,EAAE,KAAKD,CAAC,CAEf,CACA,QAAS,CACP,KAAK,QAAQ,KAAK,KAAK,MAAM,CAC/B,CAEA,QAAQE,EAAOC,EAAM,CACnB,IAAMC,EAAU,IAAI,YAAYF,EAAM,OAAS,CAAC,EAChDA,EAAM,QAAQ,CAACG,EAAK,IAAM,CACxBD,EAAQ,EAAI,CAAC,EAAIA,EAAQ,CAAC,EAAI,KAAK,QAAQC,EAAM,CAAC,EAAI,KAAK,QAAQA,CAAG,CACxE,CAAC,EACD,IAAMC,EAAUH,EAAK,IAAI,CAACI,EAAGT,IAAM,CACjC,IAAMnB,EAAO,KAAK,OAAOmB,CAAC,EACpBU,EAAMD,EAAE,KAAK,MAAM,EACrBE,EAAK,EACT,QAAWJ,KAAOH,EAChB,QAAS,EAAI,KAAK,QAAQG,CAAG,EAAG,EAAI,KAAK,QAAQA,EAAM,CAAC,EAAG,IACzDG,EAAIC,GAAI,EAAI9B,EAAK,CAAC,EAGtB,OAAO6B,CACT,CAAC,EACD,MAAO,CAAE,QAAAJ,EAAS,QAAAE,CAAQ,CAC5B,CACF,EACII,GAAWxC,GAAM,IAAI,aAAaA,CAAC,EACvC,SAASyC,GAAYC,EAAQC,EAAQC,EAAI,CAAC,EAAG,CAC3C,GAAM,CACJ,MAAApC,EACA,KAAAC,EACA,GAAAC,EACA,MAAOmC,EACP,QAAA1C,EACA,MAAAV,EACA,UAAAqD,CACF,EAAI,UAAWJ,EAAS7B,GAAY6B,EAAQE,EAAE,cAAeA,EAAE,MAAM,EAAI3C,GAAYyC,CAAM,EACrFK,EAAW5C,EAAQ,OACnB6C,EAAYzC,GAASA,EAAOwC,EAAW5C,EAAQI,CAAI,EAAI,EACvD0C,EAAUnD,GAAMC,GAAWS,EAAMV,CAAC,EAAE,IAAI,EAAE,KAC1CoD,EAAWpD,GAAMU,EAAMV,CAAC,EAAE,MAC1BqD,GAAU,CAACzB,EAAGC,KAAOuB,EAAQxB,CAAC,GAAK,IAAMwB,EAAQvB,CAAC,GAAK,GACvDyB,EAAW5C,EAAM,IAAI,CAAC6C,EAAGvD,IAAMA,CAAC,EAChCwD,EAAkBF,EAAS,OAAQtD,GAAMmD,EAAOnD,CAAC,IAAMgD,CAAS,EAAE,KAAKK,EAAO,EAC9EI,GAAQD,EAAgB,CAAC,EACzBE,GAASJ,EAAS,OAAQtD,GAAMmD,EAAOnD,CAAC,IAAMgD,CAAS,EAC7D,GAAIS,KAAU,QAAUC,GAAO,SAAW,EACxC,OAEF,IAAMC,GAAQC,GAAQF,GAAQP,CAAM,EAC9BU,EAAY,IAAI,aAAalE,EAAM,MAAM,EAAE,KAAK,OAAO,GAAG,EAC1DmE,EAAU,IAAI,aAAanE,EAAM,MAAM,EACvCoE,EAA2B,IAAI,IACjCC,GAAgB,GAChBC,EAAe,GACbC,EAAMrB,GAAUA,EAAO,IAAMA,EAAO,MAAQA,EAAS,OAC3D,QAAWsB,KAASX,EAAiB,CACnC,IAAIY,EAAMhB,EAAQe,CAAK,GAAK,EAC5B,QAASE,EAAI1D,EAAKwD,CAAK,EAAGG,EAAO1D,EAAGuD,CAAK,EAAGE,EAAIC,EAAMD,IAAK,CACzD,IAAM5D,EAAOsC,EAAIsB,CAAC,EACZE,EAAMrB,EAASzC,CAAI,EACzB,GAAK,OAAO,MAAMoD,EAAUpD,CAAI,CAAC,EAQ/BoD,EAAUpD,CAAI,EAAI2D,EAClBN,EAAQrD,CAAI,EAAI2D,EAAMG,EAClBL,IACFF,KAAkBI,EAAMG,GAAOL,EAAI,MACnCD,IAAiBG,GAAOF,EAAI,SAZI,CAClC,IAAMM,EAAST,EAAS,IAAItD,CAAI,EAC5B+D,EACFA,EAAO,KAAKJ,CAAG,EAEfL,EAAS,IAAItD,EAAM,CAACoD,EAAUpD,CAAI,EAAG2D,CAAG,CAAC,CAE7C,CAQAA,GAAOG,CACT,CACF,CACA,IAAME,GAAUP,IAAQ,QAAUF,IAAiBC,EAC7CS,EAAO,IAAIhD,GAAQ,CAAC,EACpBiD,EAAS,CAAC,EACVC,GAA6B,IAAI,IACjCC,GAAWC,GAAW,CAC1B,GAAI,CAACA,EACH,MAAO,GAET,IAAMC,EAAM,GAAGD,EAAO,OAAO,IAAIA,EAAO,KAAK,GACzCtE,EAAIoE,GAAW,IAAIG,CAAG,EAC1B,OAAIvE,IAAM,SACRA,EAAImE,EAAO,OACXC,GAAW,IAAIG,EAAKvE,CAAC,EACrBmE,EAAO,KAAKG,CAAM,GAEbtE,CACT,EACMS,EAAS6B,EAAE,OAAS,IAAIpB,GAAQ,CAAC,EAAI,OACvCb,EAAQ,IAAI,WAAW,CAAC,EACxBmE,EAAY,IAAI,aAAa,CAAC,EAC5BC,EAASC,GAAW,CACxB,IAAMC,EAAOzE,EAAMwE,EAAO,CAAC,CAAC,EACtBE,EAAU,CAAC,GAAGF,CAAM,EAAE,KAAK7B,EAAO,EACpCgC,EAAQD,EAAQ,OAAS,EACzBE,EAAgB,EACpB,QAAWnB,KAASiB,EAClBC,GAASzE,EAAGuD,CAAK,EAAIxD,EAAKwD,CAAK,GAAKzD,EAAMyD,CAAK,EAAE,SAAW,EAAI,GAChEmB,GAAiB5E,EAAMyD,CAAK,EAAE,UAAU,OAAS,EAE/CkB,EAAQxE,EAAM,SAChBA,EAAQ,IAAI,WAAWwE,EAAQ,CAAC,EAChCL,EAAY,IAAI,aAAaK,EAAQ,CAAC,GAExC,IAAIE,EAAS,EACTC,EAAW,GACXC,EACAC,EACEC,EAA0B,IAAI,IACpC,QAAWxB,KAASiB,EAAS,CAC3B,IAAMQ,EAASxC,EAAQe,CAAK,GACxByB,IAAW,QAAUH,IAAQ,QAAUG,EAASH,KAClDD,EAAW,IAETC,IAAQ,QAAUG,IAAW,QAAUA,EAASH,IAClDE,EAAQ,IACNJ,EACAM,GACED,EAASH,EACTC,IAAa,OAAS,OAAShF,EAAMgF,CAAQ,EAAE,MAC/ChF,EAAMyD,CAAK,EAAE,MACf,CACF,EACAtD,EAAM0E,CAAM,EAAI,EAAEK,EAASH,GAC3BT,EAAUO,GAAQ,EAAIE,GAExB,IAAIrB,EAAMwB,GAAU,EACdE,EAAWpF,EAAMyD,CAAK,EAAE,SAC9B,QAASE,EAAI1D,EAAKwD,CAAK,EAAG4B,EAAQnF,EAAGuD,CAAK,EAAGE,EAAI0B,EAAO1B,IAAK,CAC3D,IAAM5D,EAAOsC,EAAIsB,CAAC,EACZ2B,EAAMF,EAAWA,EAAS,IAAM1B,GAAOwB,GAAU,IAAM1C,EAASzC,CAAI,EAAI,EAC1EuF,EAAM,GAAK3B,IAAM0B,EAAQ,GAAK1B,EAAI1D,EAAKwD,CAAK,IAC9CwB,EAAQ,IAAIJ,EAAQ,CAAC,CAAE,GAAIS,EAAK,MAAO,UAAW,CAAC,CAAC,EACpDnF,EAAM0E,CAAM,EAAI,CAACS,EACjBhB,EAAUO,GAAQ,EAAInB,EACtBA,GAAO4B,GAETnF,EAAM0E,CAAM,EAAI9E,EAChBuE,EAAUO,GAAQ,EAAInB,EACtBA,GAAOlB,EAASzC,CAAI,CACtB,CACAgF,EAAMG,IAAW,OAAS,OAASxB,EACnCsB,EAAWvB,CACb,CACA,IAAM8B,EAAezF,GAAMA,GAAK,GAAKA,EAAI+E,GAAU1E,EAAML,CAAC,GAAK,GAAK,CAAC,OAAO,MAAMqD,EAAUhD,EAAML,CAAC,CAAC,CAAC,EAC/F0F,GAAW1F,GAAM,CACrB,IAAMD,EAAKM,EAAML,CAAC,EAClB,OAAOwE,EAAUxE,CAAC,GAAKD,EAAK,EAAI,CAACA,EAAK2C,EAAS3C,CAAE,EACnD,EACM4F,GAAc,CAACC,EAAIC,IAAO,CAC9B,IAAMC,EAAQF,GAAM,EAAIA,EAAKC,EACzBE,EAAO,GACX,QAASxE,EAAI,EAAGwE,EAAO,GAAKxE,EAAIwD,EAAQxD,IACtCwE,EAAO,CAACD,EAAQvE,EAAGuE,EAAQvE,CAAC,EAAE,KAAKkE,CAAW,GAAK,GAErD,GAAIM,EAAO,EACT,OAEF,IAAMC,EAAUD,EAAOD,GAAUzC,EAAUhD,EAAM0F,CAAI,CAAC,EAAI1C,EAAUhD,EAAMyF,CAAK,CAAC,EAC1EG,EAAQD,KAAaF,IAAUF,GAC/BM,EAAQD,EAAQlB,EAAS,EAAI,EAC7BoB,EAAaV,EAAYS,CAAK,EASpC,MAAO,CACL,KATY,CACZ,WAAAC,EACA,QAASA,EAAa,KAAK,IACzB,EACAzC,EAAI,MAAQJ,EAAQjD,EAAM6F,CAAK,CAAC,EAChC7C,EAAUhD,EAAM6F,CAAK,CAAC,EAAIxC,EAAI,GAChC,EAAI,CACN,EAGE,GAAIuC,EAAQH,EAAQ,EAAI,EACxB,GAAIG,EAAQlB,EAASe,EACrB,SAAU,CAACE,EACX,UAAWA,EAAUC,EAAQP,GAAQI,CAAK,EAAItB,EAAU,CAAC,EAAIyB,EAAQP,GAAQX,EAAS,CAAC,EAAIP,EAAUsB,CAAK,CAC5G,CACF,EACIM,GAAK,EACLC,GAAKtB,EACLuB,GAAW,GACXC,GAAW,GACXC,GAAY,GACZC,GAAU,GACVC,GACA5C,GACJ,GAAIJ,GAAOO,GAAS,CAClB,IAAI2B,EAAK,GACLC,EAAK,GACLc,EAAU,KACVC,EAAY,IAChB,QAAS5G,EAAI,EAAGA,EAAI+E,EAAQ/E,IAAK,CAC/B,IAAMD,EAAKM,EAAML,CAAC,EACdD,GAAM,GAAK,CAAC,OAAO,MAAMsD,EAAUtD,CAAE,CAAC,IACpCuD,EAAQvD,CAAE,GAAK2D,EAAI,OAASJ,EAAQvD,CAAE,EAAI4G,IAC5CA,EAAUrD,EAAQvD,CAAE,EACpB6F,EAAK5F,GAEHqD,EAAUtD,CAAE,GAAK2D,EAAI,KAAOL,EAAUtD,CAAE,EAAI6G,IAC9CA,EAAYvD,EAAUtD,CAAE,EACxB8F,EAAK7F,GAGX,CACA,GAAI4F,EAAK,GAAKC,EAAK,EAAG,CACpBU,GAAW,GACX,IAAMM,EAASjB,GAAM,GAAKC,GAAM,EAAIF,GAAYC,EAAIC,CAAE,EAAI,OACtDgB,IAED,CAAE,GAAAT,GAAI,GAAAC,GAAI,SAAAC,GAAU,UAAAI,GAAW,KAAA5C,EAAK,EAAI+C,EAE7C,MACET,GAAK,KAAK,IAAIR,EAAIC,CAAE,EAAI,EACxBQ,GAAK,KAAK,IAAIT,EAAIC,CAAE,EACpBS,GAAWV,EAAKC,EAChBW,GAAYZ,EACZa,GAAUZ,CAEd,CACA,IAAMiB,GAASnC,EAAK,QAAUoC,GAAYtH,GAAWkF,EAAK,IAAI,EAAE,IAAI,EAC9DqC,GAAOhC,GAAYD,IAAW,EAAI,OAAS2B,KAAc,OAAS,CAAE,OAAAI,GAAQ,MAAOJ,GAAW,SAAUJ,EAAS,EAAIE,GAAY,EAAI,CAAE,OAAAM,GAAQ,MAAOtC,EAAU,CAAC,EAAG,SAAU,EAAM,EAAIgC,GAAYC,GAAU,CAAE,OAAAK,GAAQ,MAAOpB,GAAQc,EAAS,EAAG,SAAU,EAAM,EAAI,CAAE,OAAAM,GAAQ,MAAOtC,EAAUgC,EAAS,EAAG,SAAU,EAAK,EAC/TS,GAAM,EACNC,GAAiB,EACjBC,GAAQ,EACRC,GAAO,EACPC,EAAO,GACPC,GAAY,EACZC,EAAU,OAAO,IACjBC,GAAS,OAAO,IACdC,GAAW1H,GAAO,CACtB,IAAMiE,EAAST,EAAS,IAAIxD,CAAE,EAC9B,GAAI,CAACiE,GAAU,OAAO,MAAMwD,EAAM,EAChC,OAAOnE,EAAUtD,CAAE,EAErB,IAAMgE,EAAMrB,EAAS3C,CAAE,EACnB2H,EAAO1D,EAAO,CAAC,EACf2D,EAAU,IACd,QAAWvC,KAAUpB,EAAQ,CAC3B,IAAM4D,EAAM,KAAK,IACf,KAAK,IAAIxC,EAASoC,EAAM,EACxB,KAAK,IAAIpC,EAASrB,EAAMyD,EAAM,CAChC,EACII,EAAMD,IACRD,EAAOtC,EACPuC,EAAUC,EAEd,CACA,OAAOF,CACT,EACM,CAAC,CAAEG,GAAOC,GAAQC,EAAQ,EAAI7D,EAAK,OACzC,QAAS8D,EAAI5B,GAAI4B,EAAI3B,GAAI2B,IAAK,CAC5B,IAAMpI,EAAQ0G,GAAWD,GAAK,GAAK2B,EAAI5B,IAAM4B,EACvCjI,EAAKM,EAAMT,CAAK,EACtB,GAAIG,EAAK,EAAG,CACV,IAAMkI,EAAQ9C,EAAQ,IAAIvF,CAAK,EAC/B,QAAWsI,MAAQ5B,GAAW,CAAC,GAAG2B,CAAK,EAAE,QAAQ,EAAIA,EACnD/D,EAAK,KACH+C,GACAiB,GAAK,GACL,OAAO,IACPrJ,GAAUG,GAAWkJ,GAAK,KAAK,EAC/B7D,GAAQ6D,GAAK,KAAK,CACpB,EACAjB,IAAOiB,GAAK,GAEdb,EAAOnD,EAAK,OAAS,EACrBoD,GAAYzI,GACZ0I,EAAU,OAAO,IACjBJ,IAAS,CAACpH,EACVqH,GAAO,EACP,QACF,CACA,IAAMrD,EAAMrB,EAAS3C,CAAE,EACjBkC,EAAKwF,GAAQ1H,CAAE,EACfoI,EAAK,CAAC,OAAO,MAAMlG,CAAE,EAC3BxB,GAAQ,KAAKV,EAAIkH,GAAKlD,EAAKoE,EAAK,EAAI,CAAC,EACrC,IAAMC,EAASf,GAAQ,GAAK,CAAC,OAAO,MAAME,CAAO,EAC3CvB,EAAUmC,GAAMC,GAAUhB,IAAQ,GAAKG,GAAWM,GAAMR,CAAI,GAAK,KAAOpF,EACxEoG,GAAOF,GAAMC,GAAUhB,IAAQ,GAAKnF,EAAK8B,IAAQwD,EACnD,CAACY,GAAMd,GAAQ,GAAK,EAAEC,IAAa3I,GAAmBE,KACxDgJ,GAAMR,CAAI,GAAKtD,EACNiC,GAAWqC,IACpBR,GAAMR,CAAI,GAAKtD,EACViC,IACHuB,EAAUtF,EACV6F,GAAOT,CAAI,EAAIpF,EACfqF,IAAa1I,GACbmJ,GAASV,CAAI,EAAIC,IAEnBF,GAAOpB,EAAU,EAAI,KAErBsB,GAAYa,EAAKxJ,GAAmB,EACpC4I,EAAUY,EAAKlG,EAAK,OAAO,IAC3BiC,EAAK,KAAK+C,GAAKlD,EAAKwD,EAASD,GAAW,EAAE,EAC1CD,EAAOnD,EAAK,OAAS,EACrBkD,GAAO,GAETH,IAAOlD,EACHoE,EACFX,GAASJ,GAAO,EAAInF,EAAKA,EAAK8B,EAE9BmD,IAAkBnD,CAEtB,CACA,OAAAG,EAAK,OAAO,EACZzD,GAAQ,OAAO,EACR,CACL,KAAMkE,EAAK,KACX,MAAO1D,GAAQ0D,CAAI,EACnB,OAAQ5D,GAAS4D,CAAI,EACrB,UAAWA,EAAK,UAChB,GAAIsC,GACJ,eAAAC,GACA,MAAAC,GACA,SAAAZ,GACA,KAAAzC,GACA,KAAAkD,GACA,GAAGlC,EAAgB,EAAI,CAAE,cAAAA,CAAc,EAAI,CAAC,CAC9C,CACF,EACMwD,GAAe7D,EAAMzB,CAAe,EACpCuF,GAAO,CAAC,GAAGpF,GAAM,OAAO,CAAC,EAAE,IAAI,CAACuB,EAAQ1E,KAAO,CACnD,KAAMyE,EAAMC,CAAM,EAClB,IAAK1E,EAAI,CACX,EAAE,EACFuI,GAAK,KACH,CAACnH,EAAGC,IAAM,OAAOA,EAAE,KAAK,QAAQ,EAAI,OAAOD,EAAE,KAAK,QAAQ,GAAKC,EAAE,KAAK,GAAKD,EAAE,KAAK,IAAMA,EAAE,KAAK,MAAM,cAAcC,EAAE,KAAK,KAAK,CACjI,EACA,IAAMK,GAAQ,CAAC,EAAG,GAAG6G,GAAK,IAAKC,GAAMA,EAAE,GAAG,CAAC,EACrC,CAAE,QAAA5G,GAAS,QAAAE,EAAQ,EAAIoC,EAAK,QAAQxC,GAAO,CAC/CQ,GACAA,GACAA,GACCxC,GAAM,IAAI,WAAWA,CAAC,EACtBA,GAAM,IAAI,WAAWA,CAAC,CACzB,CAAC,EACK,CAAC+I,EAAOC,EAAIC,EAAgBC,EAAOC,CAAK,EAAI/G,GAClD,MAAO,CACL,OAAQ4B,EAAMA,EAAI,MAAQd,EAAQK,EAAK,GAAK,EAC5C,KAAM,CAACqF,GAAc,GAAGC,GAAK,IAAKC,GAAMA,EAAE,IAAI,CAAC,EAC/C,QAAA5G,GACA,MAAA6G,EACA,GAAAC,EACA,eAAAC,EACA,MAAAC,EACA,MAAAC,EACA,OAAA1E,EACA,OAAQ1D,GAAUqI,GAAarI,EAAQiB,GAAOvC,CAAK,CACrD,CACF,CACA,SAAS2J,GAAarI,EAAQiB,EAAOvC,EAAO,CAC1C,GAAM,CAAE,QAAAyC,EAAS,QAAAE,CAAQ,EAAIrB,EAAO,QAAQiB,EAAO,CAChDhC,GAAM,IAAI,WAAWA,CAAC,EACvBwC,GACAA,GACCxC,GAAM,IAAI,WAAWA,CAAC,CACzB,CAAC,EACK,CAACO,EAAMwI,EAAOC,EAAIjD,CAAW,EAAI3D,EACvC,MAAO,CAAE,QAAAF,EAAS,KAAA3B,EAAM,MAAAwI,EAAO,GAAAC,EAAI,YAAAjD,EAAa,MAAAtG,CAAM,CACxD,CACA,SAAS4J,GAAM,EAAGf,EAAG,CACnB,IAAMgB,EAAI,EAAE,MAAMhB,CAAC,EACbiB,EAAM,CACV,MAAO,EAAE,MAAMjB,CAAC,EAChB,GAAI,EAAE,GAAGA,CAAC,EACV,aAAcgB,EAAIrK,MAAsB,CAC1C,EACA,GAAIqK,EAAInK,GAAS,CACfoK,EAAI,IAAM,GACV,IAAMhK,EAAQH,GAAWkK,GAAKjK,GAAc,CAAC,EACzCE,IACFgK,EAAI,MAAQhK,GAEd,IAAM4J,EAAQ,EAAE,OAAO,EAAE,MAAMb,CAAC,CAAC,EAC7Ba,IACFI,EAAI,MAAQJ,EAEhB,MACEI,EAAI,eAAiB,OAAO,MAAM,EAAE,eAAejB,CAAC,CAAC,EAAI,OAAS,EAAE,eAAeA,CAAC,EAEtF,OAAIgB,EAAIpK,KACNqK,EAAI,SAAW,IAEVA,CACT,CACA,SAASC,GAASzH,EAAGI,EAAK,CACxB,IAAMG,EAAM,CAAC,EACb,QAASgG,EAAIvG,EAAE,QAAQI,CAAG,EAAGmG,EAAIvG,EAAE,QAAQI,EAAM,CAAC,EAAGmG,IACnDhG,EAAI,KAAK,CACP,KAAMP,EAAE,MAAMA,EAAE,KAAKuG,CAAC,CAAC,EACvB,MAAOvG,EAAE,MAAMuG,CAAC,EAChB,GAAIvG,EAAE,GAAGuG,CAAC,EACV,YAAavG,EAAE,YAAYuG,CAAC,IAAM,CACpC,CAAC,EAEH,OAAOhG,CACT,CACA,SAASmH,GAAW,EAAGC,EAAM,CAC3B,IAAMb,EAAO,EAAE,KAAK,IAAI,CAACc,EAAMrJ,IAAM,CACnC,IAAMkE,EAAO,CAAC,EACd,QAAS8D,EAAI,EAAE,QAAQhI,CAAC,EAAGgI,EAAI,EAAE,QAAQhI,EAAI,CAAC,EAAGgI,IAC/C9D,EAAK,KAAK6E,GAAM,EAAGf,CAAC,CAAC,EAEvB,MAAO,CACL,GAAGqB,EACH,KAAAnF,EACA,OAAQ,EAAE,QAAUgF,GAAS,EAAE,OAAQlJ,CAAC,CAC1C,CACF,CAAC,EACD,MAAO,CAAE,OAAQ,EAAE,OAAQ,KAAAoJ,EAAM,UAAWb,EAAK,CAAC,EAAG,KAAMA,EAAK,MAAM,CAAC,CAAE,CAC3E",
-  "names": ["START_STOP_TAG", "END_STOP_TAG", "STOP_KINDS", "GAP_CAUSE_TEXT", "OUTSIDE_TEXT", "gapParts", "bp", "after", "before", "left", "right", "rest", "lead", "trail", "elsewhere", "s", "part", "stopAt", "table", "i", "ref", "stopOf", "kind", "trimmed", "chunk", "cut", "parseStopTag", "value", "kind", "fields", "bp", "trimmed", "chunk", "field", "at", "stopOf", "stopFields", "before", "after", "walkStopFields", "tags", "START_STOP_TAG", "END_STOP_TAG", "StopColumns", "stop", "STOP_KINDS", "chunk", "ref", "pLineName", "name", "start", "end", "tablePath", "w", "p", "walkName", "fields", "panSNFields", "steps", "abridged", "stopFields", "stopAt", "namesByList", "lists", "names", "listCount", "pathNames", "starts", "list", "i", "fill", "grouped", "listed", "_", "out", "k", "tableNodeIds", "n", "l", "traversals", "canonical", "claim", "node", "reversed", "stepCount", "s", "segment", "graphFromTables", "count", "declared", "drawnWalks", "ids", "nodes", "ref", "edges", "neighbours", "pairList", "b", "near", "j", "addPair", "edgeLists", "a", "adjacency", "adjacentNode", "adjacentList", "listOf", "nameIndex", "crossedList", "crossedName", "crossings", "lastWalk", "paths", "anchorPaths", "totalSteps", "visitPath", "visitStart", "visitReversed", "visitOrder", "blocks", "pathSamples", "edgeNameIndex", "edgeNames", "head", "pathName", "visitName", "named", "panSNSample", "edgeNamed", "visitSample", "first", "nodeIds", "pos", "prev", "at", "listNames", "edge", "walked", "PathVisits", "RUN_ON_REFERENCE", "RUN_REVERSED", "RUN_GAP", "GAP_CAUSES", "CAUSE_SHIFT", "causeFlags", "cause", "referenceOf", "names", "referencePath", "rankZero", "referenceWalkName", "graph", "p", "pathOrigin", "n", "graphPieces", "index", "lengths", "indexOf", "id", "i", "node", "heads", "from", "to", "steps", "path", "tablePieces", "tables", "visits", "w", "kept", "tablePath", "tableNodeIds", "h", "sampleOf", "panSNSample", "labelOf", "Columns", "width", "a", "b", "c", "d", "e", "v", "order", "make", "offsets", "row", "columns", "m", "out", "at", "float64", "walkRowRuns", "source", "region", "o", "all", "reference", "declared", "lengthOf", "nameOf", "startOf", "byStart", "pieceIds", "_", "referencePieces", "first", "others", "walks", "groupBy", "spanStart", "spanEnd", "revisits", "reachesBefore", "reachesAfter", "cut", "piece", "pos", "s", "stop", "len", "starts", "flanked", "runs", "chunks", "chunkIndex", "chunkOf", "chunk2", "key", "stepStart", "rowOf", "pieces", "head", "ordered", "count", "abridgedSteps", "length", "unplaced", "end", "previous", "partsAt", "start2", "gapParts", "abridged", "stop2", "bp3", "onReference", "stepEnd", "partialSide", "i0", "i1", "flank", "near", "forward", "after", "last2", "contigEnds", "lo", "hi", "backward", "complete", "flankFrom", "flankTo", "axisStart", "bestEnd", "bestStart", "inside", "contig", "panSNContig", "axis", "bp2", "offReferenceBp", "gapBp", "step", "last", "lastFlags", "lastRef", "cursor", "placeOf", "best", "bestGap", "gap", "runBp", "runRef", "runFlags", "k", "parts", "part", "on", "placed", "back", "referenceRow", "rows", "r", "start", "bp", "referenceStart", "flags", "chunk", "visitColumns", "runAt", "f", "run", "visitsOf", "walkRowsOf", "unit", "meta"]
+  "sources": ["../../node_modules/.pnpm/@jbrowse+bandage-core@11.9.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-LG2UK4MB.js", "../../node_modules/.pnpm/@jbrowse+bandage-core@11.9.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-7L7MN2OM.js", "../../node_modules/.pnpm/@jbrowse+bandage-core@11.9.0/node_modules/@jbrowse/bandage-core/dist/chunks/chunk-LODKC7PJ.js"],
+  "sourcesContent": ["// src/gfa/walkStops.ts\nvar START_STOP_TAG = \"ws\";\nvar END_STOP_TAG = \"we\";\nvar STOP_KINDS = [\"elsewhere\", \"break\", \"end\"];\nvar GAP_CAUSE_TEXT = {\n  missing: \"not in the graph\",\n  elsewhere: \"on nodes filed elsewhere\",\n  unknown: \"gap, cause unknown\",\n  abridged: \"abridged: steps not loaded\"\n};\nvar OUTSIDE_TEXT = \"outside the extracted subgraph\";\nfunction gapParts(bp, after, before) {\n  if (!after && !before) {\n    return [{ bp }];\n  }\n  const left = Math.min(after?.trimmed ?? 0, bp);\n  const right = Math.min(before?.trimmed ?? 0, bp - left);\n  let rest = bp - left - right;\n  const lead = after?.kind === \"break\" ? Math.min(after.bp, rest) : 0;\n  rest -= lead;\n  const trail = before?.kind === \"break\" ? Math.min(before.bp, rest) : 0;\n  rest -= trail;\n  const elsewhere = [after, before].find((s) => s?.kind === \"elsewhere\");\n  const parts = [\n    { bp: left },\n    { bp: lead, cause: \"missing\" },\n    elsewhere?.kind === \"elsewhere\" ? { bp: rest, cause: \"elsewhere\", chunk: elsewhere.chunk } : { bp: rest, cause: \"unknown\" },\n    { bp: trail, cause: \"missing\" },\n    { bp: right }\n  ];\n  return parts.filter((part) => part.bp > 0);\n}\nfunction stopAt(table, i) {\n  const bp = table.bp[i];\n  const ref = table.chunkRefs[i];\n  return stopOf(\n    table.kindNames[table.kinds[i]],\n    Number.isNaN(bp) ? void 0 : bp,\n    table.trimmed[i],\n    ref < 0 ? void 0 : { refName: table.chunkRefNames[ref], start: table.chunkStarts[i] }\n  );\n}\nfunction stopOf(kind, bp, trimmed, chunk) {\n  const cut = trimmed > 0 ? { trimmed } : {};\n  if (kind === \"elsewhere\" && chunk) {\n    return { kind, chunk, ...bp === void 0 ? {} : { bp }, ...cut };\n  }\n  if (kind === \"break\" && bp !== void 0) {\n    return { kind, bp, ...chunk ? { chunk } : {}, ...cut };\n  }\n  return kind === \"end\" ? { kind, ...cut } : void 0;\n}\nfunction stopTag(stop) {\n  const parts = [stop.kind];\n  if (\"bp\" in stop && stop.bp !== void 0) {\n    parts.push(`bp=${stop.bp}`);\n  }\n  if (stop.trimmed) {\n    parts.push(`trimmed=${stop.trimmed}`);\n  }\n  if (\"chunk\" in stop && stop.chunk) {\n    parts.push(`chunk=${stop.chunk.refName}:${stop.chunk.start}`);\n  }\n  return parts.join(\",\");\n}\nfunction parseStopTag(value) {\n  const [kind, ...fields] = value.split(\",\");\n  let bp;\n  let trimmed = 0;\n  let chunk;\n  for (const field of fields) {\n    if (field.startsWith(\"bp=\")) {\n      bp = +field.slice(3);\n    } else if (field.startsWith(\"trimmed=\")) {\n      trimmed = +field.slice(8);\n    } else if (field.startsWith(\"chunk=\")) {\n      const at = field.lastIndexOf(\":\");\n      chunk = { refName: field.slice(6, at), start: +field.slice(at + 1) };\n    }\n  }\n  return stopOf(kind, bp, trimmed, chunk);\n}\nfunction stopFields(before, after) {\n  return {\n    ...before ? { before } : {},\n    ...after ? { after } : {}\n  };\n}\nfunction walkStopFields(tags) {\n  const before = tags[START_STOP_TAG];\n  const after = tags[END_STOP_TAG];\n  return stopFields(\n    typeof before === \"string\" ? parseStopTag(before) : void 0,\n    typeof after === \"string\" ? parseStopTag(after) : void 0\n  );\n}\nfunction walkStopTags(walks, p) {\n  const tags = [];\n  for (const [tag, table] of [\n    [START_STOP_TAG, walks.before],\n    [END_STOP_TAG, walks.after]\n  ]) {\n    const stop = table && stopAt(table, p);\n    if (stop) {\n      tags.push(`\t${tag}:Z:${stopTag(stop)}`);\n    }\n  }\n  return tags.join(\"\");\n}\nvar StopColumns = class {\n  constructor() {\n    this.kinds = [];\n    this.bp = [];\n    this.trimmed = [];\n    this.chunkRefs = [];\n    this.chunkStarts = [];\n    this.chunkRefNames = [];\n    this.refIndex = /* @__PURE__ */ new Map();\n  }\n  push(stop) {\n    this.kinds.push(STOP_KINDS.indexOf(stop.kind));\n    this.bp.push(\"bp\" in stop && stop.bp !== void 0 ? stop.bp : NaN);\n    this.trimmed.push(stop.trimmed ?? 0);\n    const chunk = \"chunk\" in stop ? stop.chunk : void 0;\n    if (chunk) {\n      let ref = this.refIndex.get(chunk.refName);\n      if (ref === void 0) {\n        ref = this.chunkRefNames.length;\n        this.refIndex.set(chunk.refName, ref);\n        this.chunkRefNames.push(chunk.refName);\n      }\n      this.chunkRefs.push(ref);\n      this.chunkStarts.push(chunk.start);\n    } else {\n      this.chunkRefs.push(-1);\n      this.chunkStarts.push(NaN);\n    }\n  }\n  table() {\n    return {\n      kinds: Uint8Array.from(this.kinds),\n      kindNames: [...STOP_KINDS],\n      bp: Float64Array.from(this.bp),\n      trimmed: Float64Array.from(this.trimmed),\n      chunkRefs: Int32Array.from(this.chunkRefs),\n      chunkStarts: Float64Array.from(this.chunkStarts),\n      chunkRefNames: this.chunkRefNames\n    };\n  }\n};\n\nexport {\n  START_STOP_TAG,\n  END_STOP_TAG,\n  GAP_CAUSE_TEXT,\n  OUTSIDE_TEXT,\n  gapParts,\n  stopAt,\n  stopTag,\n  parseStopTag,\n  stopFields,\n  walkStopFields,\n  walkStopTags,\n  StopColumns\n};\n", "import {\n  stopAt,\n  stopFields,\n  walkStopTags\n} from \"./chunk-LG2UK4MB.js\";\nimport {\n  PathVisits\n} from \"./chunk-ZPZ7GNBT.js\";\nimport {\n  panSNFields,\n  panSNSample\n} from \"./chunk-2JL2JVZ2.js\";\n\n// src/gfa/graphTables.ts\nfunction pLineName(name, start, end) {\n  return start === 0 ? name : `${name}:${start}-${end}`;\n}\nfunction tablePath(w, p) {\n  const walkName = w.names[p];\n  const fields = panSNFields(walkName);\n  const start = w.starts[p];\n  const steps = w.abridgedSteps?.[p] ?? Number.NaN;\n  const abridged = Number.isNaN(steps) ? {} : { abridged: { steps, bp: w.abridgedBp?.[p] ?? 0 } };\n  return fields ? {\n    name: `${fields.sample}#${fields.haplotype}#${fields.contig}`,\n    start,\n    ...fields,\n    ...stopFields(\n      w.before && stopAt(w.before, p),\n      w.after && stopAt(w.after, p)\n    ),\n    ...abridged\n  } : { name: pLineName(walkName, start, w.ends[p]), start };\n}\nfunction namesByList(lists, names, listCount, pathNames) {\n  const starts = new Int32Array(listCount + 1);\n  for (const list of lists) {\n    starts[list + 1]++;\n  }\n  for (let i = 0; i < listCount; i++) {\n    starts[i + 1] += starts[i];\n  }\n  const fill = starts.slice(0, listCount);\n  const grouped = new Int32Array(lists.length);\n  lists.forEach((list, i) => {\n    grouped[fill[list]++] = names[i];\n  });\n  const listed = new Int32Array(pathNames.length).fill(-1);\n  return Array.from({ length: listCount }, (_, list) => {\n    const out = [];\n    for (let i = starts[list]; i < starts[list + 1]; i++) {\n      const k = grouped[i];\n      if (listed[k] !== list) {\n        listed[k] = list;\n        out.push(pathNames[k]);\n      }\n    }\n    return out;\n  });\n}\nfunction tableNodeIds({ nodes: n, links: l, walks: w }, traversals) {\n  const canonical = new Uint8Array(n.names.length);\n  const claim = (node, reversed) => {\n    if (canonical[node] === 0) {\n      canonical[node] = reversed ? 2 : 1;\n    }\n  };\n  for (let i = 0; i < l.from.length; i++) {\n    claim(l.from[i], l.strands[i] & 1);\n    claim(l.to[i], l.strands[i] & 2);\n  }\n  const stepCount = w.offsets[w.names.length] ?? 0;\n  for (let s = 0; s < stepCount; s++) {\n    const node = w.steps[s];\n    claim(node, w.reversed[s]);\n    if (traversals) {\n      traversals[node]++;\n    }\n  }\n  return n.names.map(\n    (segment, i) => `${segment}${canonical[i] === 2 ? \"-\" : \"+\"}`\n  );\n}\nfunction graphFromTables({ nodes: n, links: l, walks: w }, name = \"Imported GFA\") {\n  const count = n.names.length;\n  const declared = n.lengths.length;\n  const drawnWalks = [];\n  for (let p = 0; p < w.names.length; p++) {\n    if (w.offsets[p + 1] > w.offsets[p]) {\n      drawnWalks.push(p);\n    }\n  }\n  const traversals = new Int32Array(count);\n  const ids = tableNodeIds({ nodes: n, links: l, walks: w }, traversals);\n  const nodes = [];\n  for (let i = 0; i < declared; i++) {\n    const ref = n.refs[i];\n    nodes.push({\n      id: ids[i],\n      name: n.names[i],\n      length: n.lengths[i],\n      depth: Math.max(traversals[i], 1),\n      stable: ref < 0 ? void 0 : {\n        refName: n.refNames[ref],\n        start: n.starts[i],\n        rank: n.ranks[i]\n      },\n      samples: void 0\n    });\n  }\n  const edges = [];\n  const neighbours = new Array(count);\n  const pairList = (a, b) => {\n    const near = neighbours[a];\n    if (near) {\n      for (let j = 0; j < near.length; j += 2) {\n        if (near[j] === b) {\n          return near[j + 1];\n        }\n      }\n    }\n    return void 0;\n  };\n  const addPair = (a, b, list) => {\n    const near = neighbours[a];\n    if (near) {\n      near.push(b, list);\n    } else {\n      neighbours[a] = [b, list];\n    }\n  };\n  const edgeLists = [];\n  let lists = 0;\n  for (let i = 0; i < l.from.length; i++) {\n    const a = l.from[i];\n    const b = l.to[i];\n    edges.push({\n      from: ids[a],\n      to: ids[b],\n      fromStrand: l.strands[i] & 1 ? \"-\" : \"+\",\n      toStrand: l.strands[i] & 2 ? \"-\" : \"+\"\n    });\n    let list = pairList(a, b);\n    if (list === void 0) {\n      list = lists++;\n      addPair(a, b, list);\n      addPair(b, a, list);\n    }\n    edgeLists.push(list);\n  }\n  const adjacency = new Int32Array(count + 1);\n  for (let a = 0; a < count; a++) {\n    adjacency[a + 1] = adjacency[a] + (neighbours[a]?.length ?? 0) / 2;\n  }\n  const adjacentNode = new Int32Array(adjacency[count]);\n  const adjacentList = new Int32Array(adjacency[count]);\n  neighbours.forEach((near, a) => {\n    for (let j = 0; j < near.length; j += 2) {\n      adjacentNode[adjacency[a] + j / 2] = near[j];\n      adjacentList[adjacency[a] + j / 2] = near[j + 1];\n    }\n  });\n  const listOf = (a, b) => {\n    for (let j = adjacency[a]; j < adjacency[a + 1]; j++) {\n      if (adjacentNode[j] === b) {\n        return adjacentList[j];\n      }\n    }\n    return -1;\n  };\n  const nameIndex = /* @__PURE__ */ new Map();\n  const pathNames = [];\n  const crossedList = new Int32Array(w.offsets[w.names.length] ?? 0);\n  const crossedName = new Int32Array(crossedList.length);\n  let crossings = 0;\n  const lastWalk = new Int32Array(lists).fill(-1);\n  const paths = [];\n  const anchorPaths = [];\n  const totalSteps = w.offsets[w.names.length] ?? 0;\n  const visitPath = new Int32Array(totalSteps);\n  const visitStart = new Float64Array(totalSteps);\n  const visitReversed = new Uint8Array(totalSteps);\n  const fill = new Int32Array(count).fill(-1);\n  const visitOrder = [];\n  const blocks = [0];\n  const pathSamples = [];\n  const edgeNameIndex = /* @__PURE__ */ new Map();\n  const edgeNames = [];\n  for (const p of drawnWalks) {\n    const head = tablePath(w, p);\n    const { start, name: pathName } = head;\n    const visitName = head.sample === void 0 ? w.names[p] : pathName;\n    let named = nameIndex.get(visitName);\n    if (named === void 0) {\n      named = pathNames.length;\n      nameIndex.set(visitName, named);\n      pathNames.push(visitName);\n      pathSamples.push(panSNSample(visitName));\n    }\n    let edgeNamed = edgeNameIndex.get(pathName);\n    if (edgeNamed === void 0) {\n      edgeNamed = edgeNames.length;\n      edgeNameIndex.set(pathName, edgeNamed);\n      edgeNames.push(pathName);\n    }\n    const visitSample = pathSamples[named];\n    const first = w.offsets[p];\n    const nodeIds = new Array(w.offsets[p + 1] - first);\n    let pos = start;\n    let prev = -1;\n    for (let s = first; s < w.offsets[p + 1]; s++) {\n      const node = w.steps[s];\n      nodeIds[s - first] = ids[node];\n      if (fill[node] === -1) {\n        fill[node] = blocks.at(-1);\n        blocks.push(fill[node] + traversals[node]);\n        visitOrder.push(node);\n      }\n      const at = fill[node]++;\n      visitPath[at] = named;\n      visitStart[at] = pos;\n      visitReversed[at] = w.reversed[s];\n      pos += node < declared ? n.lengths[node] : 0;\n      if (prev >= 0) {\n        const list = listOf(prev, node);\n        if (list >= 0 && lastWalk[list] !== p) {\n          lastWalk[list] = p;\n          crossedList[crossings] = list;\n          crossedName[crossings++] = edgeNamed;\n        }\n      }\n      prev = node;\n    }\n    paths.push({ ...head, nodeIds });\n    anchorPaths.push({\n      name: visitName,\n      sample: visitSample,\n      start,\n      length: pos - start\n    });\n  }\n  const listNames = namesByList(\n    crossedList.subarray(0, crossings),\n    crossedName,\n    lists,\n    edgeNames\n  );\n  edges.forEach((edge, i) => {\n    const names = listNames[edgeLists[i]];\n    if (names.length > 0) {\n      edge.pathIds = names;\n    }\n  });\n  const walked = drawnWalks.length > 0;\n  return {\n    name,\n    nodes,\n    edges,\n    paths: walked ? paths : void 0,\n    anchorPaths: walked ? anchorPaths : void 0,\n    pathVisits: walked ? new PathVisits({\n      segments: visitOrder.map((node) => n.names[node]),\n      offsets: Int32Array.from(blocks),\n      path: visitPath.subarray(0, blocks.at(-1)),\n      start: visitStart.subarray(0, blocks.at(-1)),\n      reversed: visitReversed.subarray(0, blocks.at(-1)),\n      paths: pathNames,\n      samples: pathSamples\n    }) : void 0,\n    anchoredBy: nodes.some((node) => node.stable) ? \"tags\" : void 0\n  };\n}\nfunction graphTablesGFA({ nodes, links, walks }) {\n  const { names } = nodes;\n  const lines = [\"H\tVN:Z:1.1\"];\n  for (let i = 0; i < nodes.lengths.length; i++) {\n    const ref = nodes.refs[i];\n    const stable = ref < 0 ? \"\" : `\tSN:Z:${nodes.refNames[ref]}\tSO:i:${nodes.starts[i]}\tSR:i:${nodes.ranks[i]}`;\n    lines.push(`S\t${names[i]}\t*\tLN:i:${nodes.lengths[i]}${stable}`);\n  }\n  for (let i = 0; i < links.from.length; i++) {\n    const strands = links.strands[i];\n    lines.push(\n      `L\t${names[links.from[i]]}\t${strands & 1 ? \"-\" : \"+\"}\t${names[links.to[i]]}\t${strands & 2 ? \"-\" : \"+\"}\t0M`\n    );\n  }\n  for (let p = 0; p < walks.names.length; p++) {\n    const name = walks.names[p];\n    const fields = panSNFields(name);\n    const start = walks.starts[p];\n    const end = walks.ends[p];\n    const steps = [];\n    for (let s = walks.offsets[p]; s < walks.offsets[p + 1]; s++) {\n      steps.push([names[walks.steps[s]], walks.reversed[s]]);\n    }\n    lines.push(\n      fields ? `W\t${fields.sample}\t${fields.haplotype}\t${fields.contig}\t${start}\t${end}\t${steps.map(([id, rev]) => (rev ? \"<\" : \">\") + id).join(\"\")}${walkStopTags(walks, p)}` : `P\t${pLineName(name, start, end)}\t${steps.map(([id, rev]) => id + (rev ? \"-\" : \"+\")).join(\",\")}\t*`\n    );\n  }\n  return lines.join(\"\\n\");\n}\n\nexport {\n  tablePath,\n  tableNodeIds,\n  graphFromTables,\n  graphTablesGFA\n};\n", "import {\n  tableNodeIds,\n  tablePath\n} from \"./chunk-7L7MN2OM.js\";\nimport {\n  gapParts\n} from \"./chunk-LG2UK4MB.js\";\nimport {\n  pathOrigin\n} from \"./chunk-3YBP46PB.js\";\nimport {\n  groupBy\n} from \"./chunk-BSOZW3FC.js\";\nimport {\n  panSNContig,\n  panSNHaplotype,\n  panSNSample\n} from \"./chunk-2JL2JVZ2.js\";\n\n// src/layout/walkRowRuns.ts\nvar RUN_ON_REFERENCE = 1;\nvar RUN_REVERSED = 2;\nvar RUN_GAP = 4;\nvar GAP_CAUSES = [\n  void 0,\n  \"missing\",\n  \"elsewhere\",\n  \"unknown\",\n  \"abridged\"\n];\nvar CAUSE_SHIFT = 3;\nvar causeFlags = (cause) => GAP_CAUSES.indexOf(cause) << CAUSE_SHIFT;\nfunction referenceOf(names, referencePath, rankZero) {\n  return referencePath !== void 0 && names.includes(referencePath) ? referencePath : names.find((n) => rankZero.has(n)) ?? names[0];\n}\nfunction referenceWalkName(graph) {\n  return referenceOf(\n    (graph.paths ?? []).map((p) => pathOrigin(p.name).name),\n    graph.referencePath,\n    new Set(\n      graph.nodes.flatMap(\n        (n) => n.stable?.rank === 0 ? [n.stable.refName] : []\n      )\n    )\n  );\n}\nfunction graphPieces(graph) {\n  const index = /* @__PURE__ */ new Map();\n  const names = [];\n  const lengths = [];\n  const indexOf = (id) => {\n    let i = index.get(id);\n    if (i === void 0) {\n      i = names.length;\n      index.set(id, i);\n      names.push(id);\n      lengths.push(0);\n    }\n    return i;\n  };\n  for (const node of graph.nodes) {\n    lengths[indexOf(node.id)] = node.length;\n  }\n  const heads = graph.paths ?? [];\n  const from = new Int32Array(heads.length);\n  const to = new Int32Array(heads.length);\n  const steps = [];\n  heads.forEach((path, p) => {\n    from[p] = steps.length;\n    for (const id of path.nodeIds) {\n      steps.push(indexOf(id));\n    }\n    to[p] = steps.length;\n  });\n  return {\n    heads,\n    from,\n    to,\n    steps: Int32Array.from(steps),\n    lengths: Int32Array.from(lengths),\n    names,\n    reference: referenceWalkName(graph)\n  };\n}\nfunction tablePieces(tables, referencePath, visits) {\n  const { nodes: n, walks: w } = tables;\n  const kept = [];\n  for (let p = 0; p < w.names.length; p++) {\n    if (w.offsets[p + 1] > w.offsets[p]) {\n      kept.push(p);\n    }\n  }\n  const heads = kept.map((p) => tablePath(w, p));\n  const rankZero = /* @__PURE__ */ new Set();\n  for (let i = 0; i < n.lengths.length; i++) {\n    if (n.refs[i] >= 0 && n.ranks[i] === 0) {\n      rankZero.add(n.refNames[n.refs[i]]);\n    }\n  }\n  return {\n    heads,\n    from: Int32Array.from(kept, (p) => w.offsets[p]),\n    to: Int32Array.from(kept, (p) => w.offsets[p + 1]),\n    steps: w.steps,\n    lengths: n.lengths,\n    // a visit names its node as the Graph does, which costs a pass over the\n    // steps\n    names: visits ? tableNodeIds(tables) : n.names,\n    reference: referenceOf(\n      heads.map((h) => pathOrigin(h.name).name),\n      referencePath,\n      rankZero\n    )\n  };\n}\nfunction sampleOf(path) {\n  return path.sample ?? panSNSample(path.name);\n}\nfunction labelOf(path) {\n  return path.haplotype !== void 0 && path.sample !== void 0 ? `${path.sample}#${path.haplotype}` : sampleOf(path);\n}\nvar Columns = class {\n  constructor(width) {\n    this.offsets = [0];\n    this.values = Array.from({ length: width }, () => []);\n  }\n  get length() {\n    return this.values[0].length;\n  }\n  push(a, b, c, d, e) {\n    const v = this.values;\n    v[0].push(a);\n    v[1].push(b);\n    v[2].push(c);\n    v[3].push(d);\n    if (e !== void 0) {\n      v[4].push(e);\n    }\n  }\n  endRow() {\n    this.offsets.push(this.length);\n  }\n  // the rows in `order`, column i in the array `make[i]` makes\n  reorder(order, make) {\n    const offsets = new Uint32Array(order.length + 1);\n    order.forEach((row, i) => {\n      offsets[i + 1] = offsets[i] + this.offsets[row + 1] - this.offsets[row];\n    });\n    const columns = make.map((m, c) => {\n      const from = this.values[c];\n      const out = m(this.length);\n      let at = 0;\n      for (const row of order) {\n        for (let k = this.offsets[row]; k < this.offsets[row + 1]; k++) {\n          out[at++] = from[k];\n        }\n      }\n      return out;\n    });\n    return { offsets, columns };\n  }\n};\nvar float64 = (n) => new Float64Array(n);\nfunction walkRowRuns(source, region, o = {}) {\n  const {\n    heads,\n    from,\n    to,\n    steps: all,\n    lengths,\n    names,\n    reference\n  } = \"walks\" in source ? tablePieces(source, o.referencePath, o.visits) : graphPieces(source);\n  const declared = lengths.length;\n  const lengthOf = (node) => node < declared ? lengths[node] : 0;\n  const nameOf = (p) => pathOrigin(heads[p].name).name;\n  const startOf = (p) => heads[p].start;\n  const byStart = (a, b) => (startOf(a) ?? 0) - (startOf(b) ?? 0);\n  const pieceIds = heads.map((_, p) => p);\n  const referencePieces = pieceIds.filter((p) => nameOf(p) === reference).sort(byStart);\n  const first = referencePieces[0];\n  const others = pieceIds.filter((p) => nameOf(p) !== reference);\n  if (first === void 0 || others.length === 0) {\n    return void 0;\n  }\n  const walks = groupBy(others, nameOf);\n  const spanStart = new Float64Array(names.length).fill(Number.NaN);\n  const spanEnd = new Float64Array(names.length);\n  const revisits = /* @__PURE__ */ new Map();\n  let reachesBefore = false;\n  let reachesAfter = false;\n  const cut = region && region.end > region.start ? region : void 0;\n  for (const piece of referencePieces) {\n    let pos = startOf(piece) ?? 0;\n    for (let s = from[piece], stop = to[piece]; s < stop; s++) {\n      const node = all[s];\n      const len = lengthOf(node);\n      if (!Number.isNaN(spanStart[node])) {\n        const starts = revisits.get(node);\n        if (starts) {\n          starts.push(pos);\n        } else {\n          revisits.set(node, [spanStart[node], pos]);\n        }\n      } else {\n        spanStart[node] = pos;\n        spanEnd[node] = pos + len;\n        if (cut) {\n          reachesBefore ||= pos + len <= cut.start;\n          reachesAfter ||= pos >= cut.end;\n        }\n      }\n      pos += len;\n    }\n  }\n  const flanked = cut === void 0 || reachesBefore && reachesAfter;\n  const runs = new Columns(5);\n  const chunks = [];\n  const chunkIndex = /* @__PURE__ */ new Map();\n  const chunkOf = (chunk2) => {\n    if (!chunk2) {\n      return -1;\n    }\n    const key = `${chunk2.refName}:${chunk2.start}`;\n    let i = chunkIndex.get(key);\n    if (i === void 0) {\n      i = chunks.length;\n      chunkIndex.set(key, i);\n      chunks.push(chunk2);\n    }\n    return i;\n  };\n  const visits = o.visits ? new Columns(4) : void 0;\n  let steps = new Int32Array(0);\n  let stepStart = new Float64Array(0);\n  const rowOf = (pieces) => {\n    const head = heads[pieces[0]];\n    const ordered = [...pieces].sort(byStart);\n    let count = ordered.length - 1;\n    let abridgedSteps = 0;\n    for (const piece of ordered) {\n      count += to[piece] - from[piece] + (heads[piece].abridged ? 1 : 0);\n      abridgedSteps += heads[piece].abridged?.steps ?? 0;\n    }\n    if (count > steps.length) {\n      steps = new Int32Array(count * 2);\n      stepStart = new Float64Array(count * 2);\n    }\n    let length = 0;\n    let unplaced = false;\n    let end;\n    let previous;\n    const partsAt = /* @__PURE__ */ new Map();\n    for (const piece of ordered) {\n      const start2 = startOf(piece);\n      if (start2 === void 0 || end !== void 0 && start2 < end) {\n        unplaced = true;\n      }\n      if (end !== void 0 && start2 !== void 0 && start2 > end) {\n        partsAt.set(\n          length,\n          gapParts(\n            start2 - end,\n            previous === void 0 ? void 0 : heads[previous].after,\n            heads[piece].before\n          )\n        );\n        steps[length] = -(start2 - end);\n        stepStart[length++] = end;\n      }\n      let pos = start2 ?? 0;\n      const abridged = heads[piece].abridged;\n      for (let s = from[piece], stop2 = to[piece]; s < stop2; s++) {\n        const node = all[s];\n        const bp3 = abridged ? abridged.bp - (pos - (start2 ?? 0)) - lengthOf(node) : 0;\n        if (bp3 > 0 && s === stop2 - 1 && s > from[piece]) {\n          partsAt.set(length, [{ bp: bp3, cause: \"abridged\" }]);\n          steps[length] = -bp3;\n          stepStart[length++] = pos;\n          pos += bp3;\n        }\n        steps[length] = node;\n        stepStart[length++] = pos;\n        pos += lengthOf(node);\n      }\n      end = start2 === void 0 ? void 0 : pos;\n      previous = piece;\n    }\n    const onReference = (i) => i >= 0 && i < length && steps[i] >= 0 && !Number.isNaN(spanStart[steps[i]]);\n    const stepEnd = (i) => {\n      const id = steps[i];\n      return stepStart[i] + (id < 0 ? -id : lengthOf(id));\n    };\n    const partialSide = (i0, i1) => {\n      const flank = i0 >= 0 ? i0 : i1;\n      let near = -1;\n      for (let d = 1; near < 0 && d < length; d++) {\n        near = [flank - d, flank + d].find(onReference) ?? -1;\n      }\n      if (near < 0) {\n        return void 0;\n      }\n      const forward = near > flank === spanStart[steps[near]] > spanStart[steps[flank]];\n      const after = forward === (flank === i0);\n      const last2 = after ? length - 1 : 0;\n      const contigEnds = onReference(last2);\n      const stop2 = {\n        contigEnds,\n        shortBp: contigEnds ? Math.max(\n          0,\n          cut.start - spanEnd[steps[last2]],\n          spanStart[steps[last2]] - cut.end\n        ) : 0\n      };\n      return {\n        stop: stop2,\n        lo: after ? flank + 1 : 0,\n        hi: after ? length : flank,\n        backward: !forward,\n        axisStart: forward ? after ? stepEnd(flank) : stepStart[0] : after ? stepEnd(length - 1) : stepStart[flank]\n      };\n    };\n    let lo = 0;\n    let hi = length;\n    let backward = false;\n    let complete = true;\n    let flankFrom = -1;\n    let flankTo = -1;\n    let axisStart;\n    let stop;\n    if (cut && flanked) {\n      let i0 = -1;\n      let i1 = -1;\n      let bestEnd = -Infinity;\n      let bestStart = Infinity;\n      for (let i = 0; i < length; i++) {\n        const id = steps[i];\n        if (id >= 0 && !Number.isNaN(spanStart[id])) {\n          if (spanEnd[id] <= cut.start && spanEnd[id] > bestEnd) {\n            bestEnd = spanEnd[id];\n            i0 = i;\n          }\n          if (spanStart[id] >= cut.end && spanStart[id] < bestStart) {\n            bestStart = spanStart[id];\n            i1 = i;\n          }\n        }\n      }\n      if (i0 < 0 || i1 < 0) {\n        complete = false;\n        const inside = i0 >= 0 || i1 >= 0 ? partialSide(i0, i1) : void 0;\n        if (inside) {\n          ;\n          ({ lo, hi, backward, axisStart, stop } = inside);\n        }\n      } else {\n        lo = Math.min(i0, i1) + 1;\n        hi = Math.max(i0, i1);\n        backward = i0 > i1;\n        flankFrom = i0;\n        flankTo = i1;\n      }\n    }\n    const contig = head.contig ?? panSNContig(pathOrigin(head.name).name);\n    const axis = unplaced || length === 0 ? void 0 : axisStart !== void 0 ? { contig, start: axisStart, reversed: backward } : flankFrom < 0 ? { contig, start: stepStart[0], reversed: false } : flankFrom < flankTo ? { contig, start: stepEnd(flankFrom), reversed: false } : { contig, start: stepStart[flankFrom], reversed: true };\n    let bp2 = 0;\n    let offReferenceBp = 0;\n    let gapBp = 0;\n    let step = 0;\n    let last = -1;\n    let lastFlags = 0;\n    let lastRef = Number.NaN;\n    let cursor = Number.NaN;\n    const placeOf = (id) => {\n      const starts = revisits.get(id);\n      if (!starts || Number.isNaN(cursor)) {\n        return spanStart[id];\n      }\n      const len = lengthOf(id);\n      let best = starts[0];\n      let bestGap = Infinity;\n      for (const start2 of starts) {\n        const gap = Math.min(\n          Math.abs(start2 - cursor),\n          Math.abs(start2 + len - cursor)\n        );\n        if (gap < bestGap) {\n          best = start2;\n          bestGap = gap;\n        }\n      }\n      return best;\n    };\n    const [, runBp, runRef, runFlags] = runs.values;\n    for (let k = lo; k < hi; k++) {\n      const index = backward ? hi - 1 - (k - lo) : k;\n      const id = steps[index];\n      if (id < 0) {\n        const parts = partsAt.get(index);\n        for (const part of backward ? [...parts].reverse() : parts) {\n          runs.push(\n            bp2,\n            part.bp,\n            Number.NaN,\n            RUN_GAP | causeFlags(part.cause),\n            chunkOf(part.chunk)\n          );\n          bp2 += part.bp;\n        }\n        last = runs.length - 1;\n        lastFlags = RUN_GAP;\n        lastRef = Number.NaN;\n        gapBp += -id;\n        step = 0;\n        continue;\n      }\n      const len = lengthOf(id);\n      const at = placeOf(id);\n      const on = !Number.isNaN(at);\n      visits?.push(id, bp2, len, on ? 1 : 0);\n      const placed = last >= 0 && !Number.isNaN(lastRef);\n      const forward = on && placed && step >= 0 && lastRef + (runBp[last] ?? 0) === at;\n      const back = on && placed && step <= 0 && at + len === lastRef;\n      if (!on && last >= 0 && !(lastFlags & (RUN_ON_REFERENCE | RUN_GAP))) {\n        runBp[last] += len;\n      } else if (forward || back) {\n        runBp[last] += len;\n        if (!forward) {\n          lastRef = at;\n          runRef[last] = at;\n          lastFlags |= RUN_REVERSED;\n          runFlags[last] = lastFlags;\n        }\n        step = forward ? 1 : -1;\n      } else {\n        lastFlags = on ? RUN_ON_REFERENCE : 0;\n        lastRef = on ? at : Number.NaN;\n        runs.push(bp2, len, lastRef, lastFlags, -1);\n        last = runs.length - 1;\n        step = 0;\n      }\n      bp2 += len;\n      if (on) {\n        cursor = step < 0 ? at : at + len;\n      } else {\n        offReferenceBp += len;\n      }\n    }\n    runs.endRow();\n    visits?.endRow();\n    return {\n      name: head.name,\n      label: labelOf(head),\n      sample: sampleOf(head),\n      haplotype: head.haplotype,\n      bp: bp2,\n      offReferenceBp,\n      gapBp,\n      complete,\n      stop,\n      axis,\n      ...abridgedSteps > 0 ? { abridgedSteps } : {}\n    };\n  };\n  const referenceRow = rowOf(referencePieces);\n  const rows = [...walks.values()].map((pieces, i) => ({\n    meta: rowOf(pieces),\n    row: i + 1\n  }));\n  const metas = [referenceRow, ...rows.map((r) => r.meta)];\n  if (new Set(metas.map((m) => m.label)).size < metas.length) {\n    for (const meta of metas) {\n      meta.label = panSNHaplotype(meta.name) ?? meta.label;\n    }\n  }\n  rows.sort(\n    (a, b) => Number(b.meta.complete) - Number(a.meta.complete) || b.meta.bp - a.meta.bp || a.meta.label.localeCompare(b.meta.label)\n  );\n  const order = [0, ...rows.map((r) => r.row)];\n  const { offsets, columns } = runs.reorder(order, [\n    float64,\n    float64,\n    float64,\n    (n) => new Uint8Array(n),\n    (n) => new Int32Array(n)\n  ]);\n  const [start, bp, referenceStart, flags, chunk] = columns;\n  return {\n    origin: cut ? cut.start : startOf(first) ?? 0,\n    rows: [referenceRow, ...rows.map((r) => r.meta)],\n    offsets,\n    start,\n    bp,\n    referenceStart,\n    flags,\n    chunk,\n    chunks,\n    visits: visits && visitColumns(visits, order, names)\n  };\n}\nfunction visitColumns(visits, order, names) {\n  const { offsets, columns } = visits.reorder(order, [\n    (n) => new Int32Array(n),\n    float64,\n    float64,\n    (n) => new Uint8Array(n)\n  ]);\n  const [node, start, bp, onReference] = columns;\n  return { offsets, node, start, bp, onReference, names };\n}\nfunction runAt(t, k) {\n  const f = t.flags[k];\n  const run = {\n    start: t.start[k],\n    bp: t.bp[k],\n    onReference: (f & RUN_ON_REFERENCE) !== 0\n  };\n  if (f & RUN_GAP) {\n    run.gap = true;\n    const cause = GAP_CAUSES[f >> CAUSE_SHIFT & 7];\n    if (cause) {\n      run.cause = cause;\n    }\n    const chunk = t.chunks[t.chunk[k]];\n    if (chunk) {\n      run.chunk = chunk;\n    }\n  } else {\n    run.referenceStart = Number.isNaN(t.referenceStart[k]) ? void 0 : t.referenceStart[k];\n  }\n  if (f & RUN_REVERSED) {\n    run.reversed = true;\n  }\n  return run;\n}\nfunction visitsOf(v, row) {\n  const out = [];\n  for (let k = v.offsets[row]; k < v.offsets[row + 1]; k++) {\n    out.push({\n      node: v.names[v.node[k]],\n      start: v.start[k],\n      bp: v.bp[k],\n      onReference: v.onReference[k] === 1\n    });\n  }\n  return out;\n}\nfunction walkRowsOf(t, unit) {\n  const rows = t.rows.map((meta, i) => {\n    const runs = [];\n    for (let k = t.offsets[i]; k < t.offsets[i + 1]; k++) {\n      runs.push(runAt(t, k));\n    }\n    return {\n      ...meta,\n      runs,\n      visits: t.visits && visitsOf(t.visits, i)\n    };\n  });\n  return { origin: t.origin, unit, reference: rows[0], rows: rows.slice(1) };\n}\n\nexport {\n  referenceWalkName,\n  walkRowRuns,\n  runAt,\n  walkRowsOf\n};\n"],
+  "mappings": "0HACA,IAAIA,GAAiB,KACjBC,GAAe,KACfC,GAAa,CAAC,YAAa,QAAS,KAAK,EACzCC,GAAiB,CACnB,QAAS,mBACT,UAAW,2BACX,QAAS,qBACT,SAAU,4BACZ,EACIC,GAAe,iCACnB,SAASC,GAASC,EAAIC,EAAOC,EAAQ,CACnC,GAAI,CAACD,GAAS,CAACC,EACb,MAAO,CAAC,CAAE,GAAAF,CAAG,CAAC,EAEhB,IAAMG,EAAO,KAAK,IAAIF,GAAO,SAAW,EAAGD,CAAE,EACvCI,EAAQ,KAAK,IAAIF,GAAQ,SAAW,EAAGF,EAAKG,CAAI,EAClDE,EAAOL,EAAKG,EAAOC,EACjBE,EAAOL,GAAO,OAAS,QAAU,KAAK,IAAIA,EAAM,GAAII,CAAI,EAAI,EAClEA,GAAQC,EACR,IAAMC,EAAQL,GAAQ,OAAS,QAAU,KAAK,IAAIA,EAAO,GAAIG,CAAI,EAAI,EACrEA,GAAQE,EACR,IAAMC,EAAY,CAACP,EAAOC,CAAM,EAAE,KAAMO,GAAMA,GAAG,OAAS,WAAW,EAQrE,MAPc,CACZ,CAAE,GAAIN,CAAK,EACX,CAAE,GAAIG,EAAM,MAAO,SAAU,EAC7BE,GAAW,OAAS,YAAc,CAAE,GAAIH,EAAM,MAAO,YAAa,MAAOG,EAAU,KAAM,EAAI,CAAE,GAAIH,EAAM,MAAO,SAAU,EAC1H,CAAE,GAAIE,EAAO,MAAO,SAAU,EAC9B,CAAE,GAAIH,CAAM,CACd,EACa,OAAQM,GAASA,EAAK,GAAK,CAAC,CAC3C,CACA,SAASC,GAAOC,EAAOC,EAAG,CACxB,IAAMb,EAAKY,EAAM,GAAGC,CAAC,EACfC,EAAMF,EAAM,UAAUC,CAAC,EAC7B,OAAOE,GACLH,EAAM,UAAUA,EAAM,MAAMC,CAAC,CAAC,EAC9B,OAAO,MAAMb,CAAE,EAAI,OAASA,EAC5BY,EAAM,QAAQC,CAAC,EACfC,EAAM,EAAI,OAAS,CAAE,QAASF,EAAM,cAAcE,CAAG,EAAG,MAAOF,EAAM,YAAYC,CAAC,CAAE,CACtF,CACF,CACA,SAASE,GAAOC,EAAMhB,EAAIiB,EAASC,EAAO,CACxC,IAAMC,EAAMF,EAAU,EAAI,CAAE,QAAAA,CAAQ,EAAI,CAAC,EACzC,OAAID,IAAS,aAAeE,EACnB,CAAE,KAAAF,EAAM,MAAAE,EAAO,GAAGlB,IAAO,OAAS,CAAC,EAAI,CAAE,GAAAA,CAAG,EAAG,GAAGmB,CAAI,EAE3DH,IAAS,SAAWhB,IAAO,OACtB,CAAE,KAAAgB,EAAM,GAAAhB,EAAI,GAAGkB,EAAQ,CAAE,MAAAA,CAAM,EAAI,CAAC,EAAG,GAAGC,CAAI,EAEhDH,IAAS,MAAQ,CAAE,KAAAA,EAAM,GAAGG,CAAI,EAAI,MAC7C,CAcA,SAASC,GAAaC,EAAO,CAC3B,GAAM,CAACC,EAAM,GAAGC,CAAM,EAAIF,EAAM,MAAM,GAAG,EACrCG,EACAC,EAAU,EACVC,EACJ,QAAWC,KAASJ,EAClB,GAAII,EAAM,WAAW,KAAK,EACxBH,EAAK,CAACG,EAAM,MAAM,CAAC,UACVA,EAAM,WAAW,UAAU,EACpCF,EAAU,CAACE,EAAM,MAAM,CAAC,UACfA,EAAM,WAAW,QAAQ,EAAG,CACrC,IAAMC,EAAKD,EAAM,YAAY,GAAG,EAChCD,EAAQ,CAAE,QAASC,EAAM,MAAM,EAAGC,CAAE,EAAG,MAAO,CAACD,EAAM,MAAMC,EAAK,CAAC,CAAE,CACrE,CAEF,OAAOC,GAAOP,EAAME,EAAIC,EAASC,CAAK,CACxC,CACA,SAASI,GAAWC,EAAQC,EAAO,CACjC,MAAO,CACL,GAAGD,EAAS,CAAE,OAAAA,CAAO,EAAI,CAAC,EAC1B,GAAGC,EAAQ,CAAE,MAAAA,CAAM,EAAI,CAAC,CAC1B,CACF,CACA,SAASC,GAAeC,EAAM,CAC5B,IAAMH,EAASG,EAAKC,EAAc,EAC5BH,EAAQE,EAAKE,EAAY,EAC/B,OAAON,GACL,OAAOC,GAAW,SAAWX,GAAaW,CAAM,EAAI,OACpD,OAAOC,GAAU,SAAWZ,GAAaY,CAAK,EAAI,MACpD,CACF,CAcA,IAAIK,GAAc,KAAM,CACtB,aAAc,CACZ,KAAK,MAAQ,CAAC,EACd,KAAK,GAAK,CAAC,EACX,KAAK,QAAU,CAAC,EAChB,KAAK,UAAY,CAAC,EAClB,KAAK,YAAc,CAAC,EACpB,KAAK,cAAgB,CAAC,EACtB,KAAK,SAA2B,IAAI,GACtC,CACA,KAAKC,EAAM,CACT,KAAK,MAAM,KAAKC,GAAW,QAAQD,EAAK,IAAI,CAAC,EAC7C,KAAK,GAAG,KAAK,OAAQA,GAAQA,EAAK,KAAO,OAASA,EAAK,GAAK,GAAG,EAC/D,KAAK,QAAQ,KAAKA,EAAK,SAAW,CAAC,EACnC,IAAME,EAAQ,UAAWF,EAAOA,EAAK,MAAQ,OAC7C,GAAIE,EAAO,CACT,IAAIC,EAAM,KAAK,SAAS,IAAID,EAAM,OAAO,EACrCC,IAAQ,SACVA,EAAM,KAAK,cAAc,OACzB,KAAK,SAAS,IAAID,EAAM,QAASC,CAAG,EACpC,KAAK,cAAc,KAAKD,EAAM,OAAO,GAEvC,KAAK,UAAU,KAAKC,CAAG,EACvB,KAAK,YAAY,KAAKD,EAAM,KAAK,CACnC,MACE,KAAK,UAAU,KAAK,EAAE,EACtB,KAAK,YAAY,KAAK,GAAG,CAE7B,CACA,OAAQ,CACN,MAAO,CACL,MAAO,WAAW,KAAK,KAAK,KAAK,EACjC,UAAW,CAAC,GAAGD,EAAU,EACzB,GAAI,aAAa,KAAK,KAAK,EAAE,EAC7B,QAAS,aAAa,KAAK,KAAK,OAAO,EACvC,UAAW,WAAW,KAAK,KAAK,SAAS,EACzC,YAAa,aAAa,KAAK,KAAK,WAAW,EAC/C,cAAe,KAAK,aACtB,CACF,CACF,ECvIA,SAASG,GAAUC,EAAMC,EAAOC,EAAK,CACnC,OAAOD,IAAU,EAAID,EAAO,GAAGA,CAAI,IAAIC,CAAK,IAAIC,CAAG,EACrD,CACA,SAASC,GAAUC,EAAGC,EAAG,CACvB,IAAMC,EAAWF,EAAE,MAAMC,CAAC,EACpBE,EAASC,GAAYF,CAAQ,EAC7BL,EAAQG,EAAE,OAAOC,CAAC,EAClBI,EAAQL,EAAE,gBAAgBC,CAAC,GAAK,OAAO,IACvCK,EAAW,OAAO,MAAMD,CAAK,EAAI,CAAC,EAAI,CAAE,SAAU,CAAE,MAAAA,EAAO,GAAIL,EAAE,aAAaC,CAAC,GAAK,CAAE,CAAE,EAC9F,OAAOE,EAAS,CACd,KAAM,GAAGA,EAAO,MAAM,IAAIA,EAAO,SAAS,IAAIA,EAAO,MAAM,GAC3D,MAAAN,EACA,GAAGM,EACH,GAAGI,GACDP,EAAE,QAAUQ,GAAOR,EAAE,OAAQC,CAAC,EAC9BD,EAAE,OAASQ,GAAOR,EAAE,MAAOC,CAAC,CAC9B,EACA,GAAGK,CACL,EAAI,CAAE,KAAMX,GAAUO,EAAUL,EAAOG,EAAE,KAAKC,CAAC,CAAC,EAAG,MAAAJ,CAAM,CAC3D,CACA,SAASY,GAAYC,EAAOC,EAAOC,EAAWC,EAAW,CACvD,IAAMC,EAAS,IAAI,WAAWF,EAAY,CAAC,EAC3C,QAAWG,KAAQL,EACjBI,EAAOC,EAAO,CAAC,IAEjB,QAASC,EAAI,EAAGA,EAAIJ,EAAWI,IAC7BF,EAAOE,EAAI,CAAC,GAAKF,EAAOE,CAAC,EAE3B,IAAMC,EAAOH,EAAO,MAAM,EAAGF,CAAS,EAChCM,EAAU,IAAI,WAAWR,EAAM,MAAM,EAC3CA,EAAM,QAAQ,CAACK,EAAMC,IAAM,CACzBE,EAAQD,EAAKF,CAAI,GAAG,EAAIJ,EAAMK,CAAC,CACjC,CAAC,EACD,IAAMG,EAAS,IAAI,WAAWN,EAAU,MAAM,EAAE,KAAK,EAAE,EACvD,OAAO,MAAM,KAAK,CAAE,OAAQD,CAAU,EAAG,CAACQ,EAAGL,IAAS,CACpD,IAAMM,EAAM,CAAC,EACb,QAASL,EAAIF,EAAOC,CAAI,EAAGC,EAAIF,EAAOC,EAAO,CAAC,EAAGC,IAAK,CACpD,IAAMM,EAAIJ,EAAQF,CAAC,EACfG,EAAOG,CAAC,IAAMP,IAChBI,EAAOG,CAAC,EAAIP,EACZM,EAAI,KAAKR,EAAUS,CAAC,CAAC,EAEzB,CACA,OAAOD,CACT,CAAC,CACH,CACA,SAASE,GAAa,CAAE,MAAOC,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAG0B,EAAY,CAClE,IAAMC,EAAY,IAAI,WAAWH,EAAE,MAAM,MAAM,EACzCI,EAAQ,CAACC,EAAMC,IAAa,CAC5BH,EAAUE,CAAI,IAAM,IACtBF,EAAUE,CAAI,EAAIC,EAAW,EAAI,EAErC,EACA,QAASd,EAAI,EAAGA,EAAIS,EAAE,KAAK,OAAQT,IACjCY,EAAMH,EAAE,KAAKT,CAAC,EAAGS,EAAE,QAAQT,CAAC,EAAI,CAAC,EACjCY,EAAMH,EAAE,GAAGT,CAAC,EAAGS,EAAE,QAAQT,CAAC,EAAI,CAAC,EAEjC,IAAMe,EAAY/B,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,EAC/C,QAASgC,EAAI,EAAGA,EAAID,EAAWC,IAAK,CAClC,IAAMH,EAAO7B,EAAE,MAAMgC,CAAC,EACtBJ,EAAMC,EAAM7B,EAAE,SAASgC,CAAC,CAAC,EACrBN,GACFA,EAAWG,CAAI,GAEnB,CACA,OAAOL,EAAE,MAAM,IACb,CAACS,EAASjB,IAAM,GAAGiB,CAAO,GAAGN,EAAUX,CAAC,IAAM,EAAI,IAAM,GAAG,EAC7D,CACF,CACA,SAASkB,GAAgB,CAAE,MAAOV,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAGJ,EAAO,eAAgB,CAChF,IAAMuC,EAAQX,EAAE,MAAM,OAChBY,EAAWZ,EAAE,QAAQ,OACrBa,EAAa,CAAC,EACpB,QAASpC,EAAI,EAAGA,EAAID,EAAE,MAAM,OAAQC,IAC9BD,EAAE,QAAQC,EAAI,CAAC,EAAID,EAAE,QAAQC,CAAC,GAChCoC,EAAW,KAAKpC,CAAC,EAGrB,IAAMyB,EAAa,IAAI,WAAWS,CAAK,EACjCG,EAAMf,GAAa,CAAE,MAAOC,EAAG,MAAOC,EAAG,MAAOzB,CAAE,EAAG0B,CAAU,EAC/Da,EAAQ,CAAC,EACf,QAASvB,EAAI,EAAGA,EAAIoB,EAAUpB,IAAK,CACjC,IAAMwB,EAAMhB,EAAE,KAAKR,CAAC,EACpBuB,EAAM,KAAK,CACT,GAAID,EAAItB,CAAC,EACT,KAAMQ,EAAE,MAAMR,CAAC,EACf,OAAQQ,EAAE,QAAQR,CAAC,EACnB,MAAO,KAAK,IAAIU,EAAWV,CAAC,EAAG,CAAC,EAChC,OAAQwB,EAAM,EAAI,OAAS,CACzB,QAAShB,EAAE,SAASgB,CAAG,EACvB,MAAOhB,EAAE,OAAOR,CAAC,EACjB,KAAMQ,EAAE,MAAMR,CAAC,CACjB,EACA,QAAS,MACX,CAAC,CACH,CACA,IAAMyB,EAAQ,CAAC,EACTC,EAAa,IAAI,MAAMP,CAAK,EAC5BQ,EAAW,CAAC,EAAGC,IAAM,CACzB,IAAMC,EAAOH,EAAW,CAAC,EACzB,GAAIG,GACF,QAASC,EAAI,EAAGA,EAAID,EAAK,OAAQC,GAAK,EACpC,GAAID,EAAKC,CAAC,IAAMF,EACd,OAAOC,EAAKC,EAAI,CAAC,EAKzB,EACMC,EAAU,CAAC,EAAGH,EAAG7B,IAAS,CAC9B,IAAM8B,EAAOH,EAAW,CAAC,EACrBG,EACFA,EAAK,KAAKD,EAAG7B,CAAI,EAEjB2B,EAAW,CAAC,EAAI,CAACE,EAAG7B,CAAI,CAE5B,EACMiC,GAAY,CAAC,EACftC,GAAQ,EACZ,QAASM,EAAI,EAAGA,EAAIS,EAAE,KAAK,OAAQT,IAAK,CACtC,IAAMiC,EAAIxB,EAAE,KAAKT,CAAC,EACZ4B,EAAInB,EAAE,GAAGT,CAAC,EAChByB,EAAM,KAAK,CACT,KAAMH,EAAIW,CAAC,EACX,GAAIX,EAAIM,CAAC,EACT,WAAYnB,EAAE,QAAQT,CAAC,EAAI,EAAI,IAAM,IACrC,SAAUS,EAAE,QAAQT,CAAC,EAAI,EAAI,IAAM,GACrC,CAAC,EACD,IAAID,EAAO4B,EAASM,EAAGL,CAAC,EACpB7B,IAAS,SACXA,EAAOL,KACPqC,EAAQE,EAAGL,EAAG7B,CAAI,EAClBgC,EAAQH,EAAGK,EAAGlC,CAAI,GAEpBiC,GAAU,KAAKjC,CAAI,CACrB,CACA,IAAMmC,EAAY,IAAI,WAAWf,EAAQ,CAAC,EAC1C,QAAS,EAAI,EAAG,EAAIA,EAAO,IACzBe,EAAU,EAAI,CAAC,EAAIA,EAAU,CAAC,GAAKR,EAAW,CAAC,GAAG,QAAU,GAAK,EAEnE,IAAMS,GAAe,IAAI,WAAWD,EAAUf,CAAK,CAAC,EAC9CiB,GAAe,IAAI,WAAWF,EAAUf,CAAK,CAAC,EACpDO,EAAW,QAAQ,CAACG,EAAMI,IAAM,CAC9B,QAASH,EAAI,EAAGA,EAAID,EAAK,OAAQC,GAAK,EACpCK,GAAaD,EAAUD,CAAC,EAAIH,EAAI,CAAC,EAAID,EAAKC,CAAC,EAC3CM,GAAaF,EAAUD,CAAC,EAAIH,EAAI,CAAC,EAAID,EAAKC,EAAI,CAAC,CAEnD,CAAC,EACD,IAAMO,GAAS,CAAC,EAAGT,IAAM,CACvB,QAASE,EAAII,EAAU,CAAC,EAAGJ,EAAII,EAAU,EAAI,CAAC,EAAGJ,IAC/C,GAAIK,GAAaL,CAAC,IAAMF,EACtB,OAAOQ,GAAaN,CAAC,EAGzB,MAAO,EACT,EACMQ,EAA4B,IAAI,IAChCzC,EAAY,CAAC,EACb0C,EAAc,IAAI,WAAWvD,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,CAAC,EAC3DwD,GAAc,IAAI,WAAWD,EAAY,MAAM,EACjDE,GAAY,EACVC,EAAW,IAAI,WAAWhD,EAAK,EAAE,KAAK,EAAE,EACxCiD,GAAQ,CAAC,EACTC,EAAc,CAAC,EACfC,EAAa7D,EAAE,QAAQA,EAAE,MAAM,MAAM,GAAK,EAC1C8D,GAAY,IAAI,WAAWD,CAAU,EACrCE,GAAa,IAAI,aAAaF,CAAU,EACxCG,EAAgB,IAAI,WAAWH,CAAU,EACzC5C,EAAO,IAAI,WAAWkB,CAAK,EAAE,KAAK,EAAE,EACpC8B,EAAa,CAAC,EACdC,EAAS,CAAC,CAAC,EACXC,GAAc,CAAC,EACfC,EAAgC,IAAI,IACpCC,EAAY,CAAC,EACnB,QAAWpE,KAAKoC,EAAY,CAC1B,IAAMiC,EAAOvE,GAAUC,EAAGC,CAAC,EACrB,CAAE,MAAAJ,EAAO,KAAM0E,CAAS,EAAID,EAC5BE,EAAYF,EAAK,SAAW,OAAStE,EAAE,MAAMC,CAAC,EAAIsE,EACpDE,EAAQnB,EAAU,IAAIkB,CAAS,EAC/BC,IAAU,SACZA,EAAQ5D,EAAU,OAClByC,EAAU,IAAIkB,EAAWC,CAAK,EAC9B5D,EAAU,KAAK2D,CAAS,EACxBL,GAAY,KAAKO,GAAYF,CAAS,CAAC,GAEzC,IAAIG,EAAYP,EAAc,IAAIG,CAAQ,EACtCI,IAAc,SAChBA,EAAYN,EAAU,OACtBD,EAAc,IAAIG,EAAUI,CAAS,EACrCN,EAAU,KAAKE,CAAQ,GAEzB,IAAMK,EAAcT,GAAYM,CAAK,EAC/BI,EAAQ7E,EAAE,QAAQC,CAAC,EACnB6E,EAAU,IAAI,MAAM9E,EAAE,QAAQC,EAAI,CAAC,EAAI4E,CAAK,EAC9CE,EAAMlF,EACNmF,EAAO,GACX,QAAShD,EAAI6C,EAAO7C,EAAIhC,EAAE,QAAQC,EAAI,CAAC,EAAG+B,IAAK,CAC7C,IAAMH,EAAO7B,EAAE,MAAMgC,CAAC,EACtB8C,EAAQ9C,EAAI6C,CAAK,EAAIvC,EAAIT,CAAI,EACzBZ,EAAKY,CAAI,IAAM,KACjBZ,EAAKY,CAAI,EAAIqC,EAAO,GAAG,EAAE,EACzBA,EAAO,KAAKjD,EAAKY,CAAI,EAAIH,EAAWG,CAAI,CAAC,EACzCoC,EAAW,KAAKpC,CAAI,GAEtB,IAAMoD,EAAKhE,EAAKY,CAAI,IAKpB,GAJAiC,GAAUmB,CAAE,EAAIR,EAChBV,GAAWkB,CAAE,EAAIF,EACjBf,EAAciB,CAAE,EAAIjF,EAAE,SAASgC,CAAC,EAChC+C,GAAOlD,EAAOO,EAAWZ,EAAE,QAAQK,CAAI,EAAI,EACvCmD,GAAQ,EAAG,CACb,IAAMjE,EAAOsC,GAAO2B,EAAMnD,CAAI,EAC1Bd,GAAQ,GAAK2C,EAAS3C,CAAI,IAAMd,IAClCyD,EAAS3C,CAAI,EAAId,EACjBsD,EAAYE,EAAS,EAAI1C,EACzByC,GAAYC,IAAW,EAAIkB,EAE/B,CACAK,EAAOnD,CACT,CACA8B,GAAM,KAAK,CAAE,GAAGW,EAAM,QAAAQ,CAAQ,CAAC,EAC/BlB,EAAY,KAAK,CACf,KAAMY,EACN,OAAQI,EACR,MAAA/E,EACA,OAAQkF,EAAMlF,CAChB,CAAC,CACH,CACA,IAAMqF,GAAYzE,GAChB8C,EAAY,SAAS,EAAGE,EAAS,EACjCD,GACA9C,GACA2D,CACF,EACA5B,EAAM,QAAQ,CAAC0C,EAAMnE,IAAM,CACzB,IAAML,EAAQuE,GAAUlC,GAAUhC,CAAC,CAAC,EAChCL,EAAM,OAAS,IACjBwE,EAAK,QAAUxE,EAEnB,CAAC,EACD,IAAMyE,GAAS/C,EAAW,OAAS,EACnC,MAAO,CACL,KAAAzC,EACA,MAAA2C,EACA,MAAAE,EACA,MAAO2C,GAASzB,GAAQ,OACxB,YAAayB,GAASxB,EAAc,OACpC,WAAYwB,GAAS,IAAIC,GAAW,CAClC,SAAUpB,EAAW,IAAKpC,GAASL,EAAE,MAAMK,CAAI,CAAC,EAChD,QAAS,WAAW,KAAKqC,CAAM,EAC/B,KAAMJ,GAAU,SAAS,EAAGI,EAAO,GAAG,EAAE,CAAC,EACzC,MAAOH,GAAW,SAAS,EAAGG,EAAO,GAAG,EAAE,CAAC,EAC3C,SAAUF,EAAc,SAAS,EAAGE,EAAO,GAAG,EAAE,CAAC,EACjD,MAAOrD,EACP,QAASsD,EACX,CAAC,EAAI,OACL,WAAY5B,EAAM,KAAMV,GAASA,EAAK,MAAM,EAAI,OAAS,MAC3D,CACF,CC3PA,IAAIyD,GAAmB,EACnBC,GAAe,EACfC,GAAU,EACVC,GAAa,CACf,OACA,UACA,YACA,UACA,UACF,EACIC,GAAc,EACdC,GAAcC,GAAUH,GAAW,QAAQG,CAAK,GAAKF,GACzD,SAASG,GAAYC,EAAOC,EAAeC,EAAU,CACnD,OAAOD,IAAkB,QAAUD,EAAM,SAASC,CAAa,EAAIA,EAAgBD,EAAM,KAAM,GAAME,EAAS,IAAI,CAAC,CAAC,GAAKF,EAAM,CAAC,CAClI,CACA,SAASG,GAAkBC,EAAO,CAChC,OAAOL,IACJK,EAAM,OAAS,CAAC,GAAG,IAAKC,GAAMC,GAAWD,EAAE,IAAI,EAAE,IAAI,EACtDD,EAAM,cACN,IAAI,IACFA,EAAM,MAAM,QACTG,GAAMA,EAAE,QAAQ,OAAS,EAAI,CAACA,EAAE,OAAO,OAAO,EAAI,CAAC,CACtD,CACF,CACF,CACF,CACA,SAASC,GAAYJ,EAAO,CAC1B,IAAMK,EAAwB,IAAI,IAC5BT,EAAQ,CAAC,EACTU,EAAU,CAAC,EACXC,EAAWC,GAAO,CACtB,IAAIC,EAAIJ,EAAM,IAAIG,CAAE,EACpB,OAAIC,IAAM,SACRA,EAAIb,EAAM,OACVS,EAAM,IAAIG,EAAIC,CAAC,EACfb,EAAM,KAAKY,CAAE,EACbF,EAAQ,KAAK,CAAC,GAETG,CACT,EACA,QAAWC,KAAQV,EAAM,MACvBM,EAAQC,EAAQG,EAAK,EAAE,CAAC,EAAIA,EAAK,OAEnC,IAAMC,EAAQX,EAAM,OAAS,CAAC,EACxBY,EAAO,IAAI,WAAWD,EAAM,MAAM,EAClCE,EAAK,IAAI,WAAWF,EAAM,MAAM,EAChCG,EAAQ,CAAC,EACf,OAAAH,EAAM,QAAQ,CAACI,EAAMd,IAAM,CACzBW,EAAKX,CAAC,EAAIa,EAAM,OAChB,QAAWN,KAAMO,EAAK,QACpBD,EAAM,KAAKP,EAAQC,CAAE,CAAC,EAExBK,EAAGZ,CAAC,EAAIa,EAAM,MAChB,CAAC,EACM,CACL,MAAAH,EACA,KAAAC,EACA,GAAAC,EACA,MAAO,WAAW,KAAKC,CAAK,EAC5B,QAAS,WAAW,KAAKR,CAAO,EAChC,MAAAV,EACA,UAAWG,GAAkBC,CAAK,CACpC,CACF,CACA,SAASgB,GAAYC,EAAQpB,EAAeqB,EAAQ,CAClD,GAAM,CAAE,MAAO,EAAG,MAAOC,CAAE,EAAIF,EACzBG,EAAO,CAAC,EACd,QAASnB,EAAI,EAAGA,EAAIkB,EAAE,MAAM,OAAQlB,IAC9BkB,EAAE,QAAQlB,EAAI,CAAC,EAAIkB,EAAE,QAAQlB,CAAC,GAChCmB,EAAK,KAAKnB,CAAC,EAGf,IAAMU,EAAQS,EAAK,IAAKnB,GAAMoB,GAAUF,EAAGlB,CAAC,CAAC,EACvCH,EAA2B,IAAI,IACrC,QAASW,EAAI,EAAGA,EAAI,EAAE,QAAQ,OAAQA,IAChC,EAAE,KAAKA,CAAC,GAAK,GAAK,EAAE,MAAMA,CAAC,IAAM,GACnCX,EAAS,IAAI,EAAE,SAAS,EAAE,KAAKW,CAAC,CAAC,CAAC,EAGtC,MAAO,CACL,MAAAE,EACA,KAAM,WAAW,KAAKS,EAAOnB,GAAMkB,EAAE,QAAQlB,CAAC,CAAC,EAC/C,GAAI,WAAW,KAAKmB,EAAOnB,GAAMkB,EAAE,QAAQlB,EAAI,CAAC,CAAC,EACjD,MAAOkB,EAAE,MACT,QAAS,EAAE,QAGX,MAAOD,EAASI,GAAaL,CAAM,EAAI,EAAE,MACzC,UAAWtB,GACTgB,EAAM,IAAKY,GAAMrB,GAAWqB,EAAE,IAAI,EAAE,IAAI,EACxC1B,EACAC,CACF,CACF,CACF,CACA,SAAS0B,GAAST,EAAM,CACtB,OAAOA,EAAK,QAAUU,GAAYV,EAAK,IAAI,CAC7C,CACA,SAASW,GAAQX,EAAM,CACrB,OAAOA,EAAK,YAAc,QAAUA,EAAK,SAAW,OAAS,GAAGA,EAAK,MAAM,IAAIA,EAAK,SAAS,GAAKS,GAAST,CAAI,CACjH,CACA,IAAIY,GAAU,KAAM,CAClB,YAAYC,EAAO,CACjB,KAAK,QAAU,CAAC,CAAC,EACjB,KAAK,OAAS,MAAM,KAAK,CAAE,OAAQA,CAAM,EAAG,IAAM,CAAC,CAAC,CACtD,CACA,IAAI,QAAS,CACX,OAAO,KAAK,OAAO,CAAC,EAAE,MACxB,CACA,KAAKC,EAAGC,EAAGC,EAAGC,EAAGC,EAAG,CAClB,IAAMC,EAAI,KAAK,OACfA,EAAE,CAAC,EAAE,KAAKL,CAAC,EACXK,EAAE,CAAC,EAAE,KAAKJ,CAAC,EACXI,EAAE,CAAC,EAAE,KAAKH,CAAC,EACXG,EAAE,CAAC,EAAE,KAAKF,CAAC,EACPC,IAAM,QACRC,EAAE,CAAC,EAAE,KAAKD,CAAC,CAEf,CACA,QAAS,CACP,KAAK,QAAQ,KAAK,KAAK,MAAM,CAC/B,CAEA,QAAQE,EAAOC,EAAM,CACnB,IAAMC,EAAU,IAAI,YAAYF,EAAM,OAAS,CAAC,EAChDA,EAAM,QAAQ,CAACG,EAAK,IAAM,CACxBD,EAAQ,EAAI,CAAC,EAAIA,EAAQ,CAAC,EAAI,KAAK,QAAQC,EAAM,CAAC,EAAI,KAAK,QAAQA,CAAG,CACxE,CAAC,EACD,IAAMC,EAAUH,EAAK,IAAI,CAACI,EAAGT,IAAM,CACjC,IAAMnB,EAAO,KAAK,OAAOmB,CAAC,EACpBU,EAAMD,EAAE,KAAK,MAAM,EACrBE,EAAK,EACT,QAAWJ,KAAOH,EAChB,QAAS,EAAI,KAAK,QAAQG,CAAG,EAAG,EAAI,KAAK,QAAQA,EAAM,CAAC,EAAG,IACzDG,EAAIC,GAAI,EAAI9B,EAAK,CAAC,EAGtB,OAAO6B,CACT,CAAC,EACD,MAAO,CAAE,QAAAJ,EAAS,QAAAE,CAAQ,CAC5B,CACF,EACII,GAAWxC,GAAM,IAAI,aAAaA,CAAC,EACvC,SAASyC,GAAYC,EAAQC,EAAQC,EAAI,CAAC,EAAG,CAC3C,GAAM,CACJ,MAAApC,EACA,KAAAC,EACA,GAAAC,EACA,MAAOmC,EACP,QAAA1C,EACA,MAAAV,EACA,UAAAqD,CACF,EAAI,UAAWJ,EAAS7B,GAAY6B,EAAQE,EAAE,cAAeA,EAAE,MAAM,EAAI3C,GAAYyC,CAAM,EACrFK,EAAW5C,EAAQ,OACnB6C,EAAYzC,GAASA,EAAOwC,EAAW5C,EAAQI,CAAI,EAAI,EACvD0C,EAAUnD,GAAMC,GAAWS,EAAMV,CAAC,EAAE,IAAI,EAAE,KAC1CoD,EAAWpD,GAAMU,EAAMV,CAAC,EAAE,MAC1BqD,GAAU,CAACzB,EAAGC,KAAOuB,EAAQxB,CAAC,GAAK,IAAMwB,EAAQvB,CAAC,GAAK,GACvDyB,GAAW5C,EAAM,IAAI,CAAC6C,EAAGvD,IAAMA,CAAC,EAChCwD,EAAkBF,GAAS,OAAQtD,GAAMmD,EAAOnD,CAAC,IAAMgD,CAAS,EAAE,KAAKK,EAAO,EAC9EI,GAAQD,EAAgB,CAAC,EACzBE,GAASJ,GAAS,OAAQtD,GAAMmD,EAAOnD,CAAC,IAAMgD,CAAS,EAC7D,GAAIS,KAAU,QAAUC,GAAO,SAAW,EACxC,OAEF,IAAMC,GAAQC,GAAQF,GAAQP,CAAM,EAC9BU,EAAY,IAAI,aAAalE,EAAM,MAAM,EAAE,KAAK,OAAO,GAAG,EAC1DmE,EAAU,IAAI,aAAanE,EAAM,MAAM,EACvCoE,EAA2B,IAAI,IACjCC,GAAgB,GAChBC,GAAe,GACbC,EAAMrB,GAAUA,EAAO,IAAMA,EAAO,MAAQA,EAAS,OAC3D,QAAWsB,KAASX,EAAiB,CACnC,IAAIY,EAAMhB,EAAQe,CAAK,GAAK,EAC5B,QAASE,EAAI1D,EAAKwD,CAAK,EAAGG,EAAO1D,EAAGuD,CAAK,EAAGE,EAAIC,EAAMD,IAAK,CACzD,IAAM5D,EAAOsC,EAAIsB,CAAC,EACZE,EAAMrB,EAASzC,CAAI,EACzB,GAAK,OAAO,MAAMoD,EAAUpD,CAAI,CAAC,EAQ/BoD,EAAUpD,CAAI,EAAI2D,EAClBN,EAAQrD,CAAI,EAAI2D,EAAMG,EAClBL,IACFF,KAAkBI,EAAMG,GAAOL,EAAI,MACnCD,KAAiBG,GAAOF,EAAI,SAZI,CAClC,IAAMM,EAAST,EAAS,IAAItD,CAAI,EAC5B+D,EACFA,EAAO,KAAKJ,CAAG,EAEfL,EAAS,IAAItD,EAAM,CAACoD,EAAUpD,CAAI,EAAG2D,CAAG,CAAC,CAE7C,CAQAA,GAAOG,CACT,CACF,CACA,IAAME,GAAUP,IAAQ,QAAUF,IAAiBC,GAC7CS,EAAO,IAAIhD,GAAQ,CAAC,EACpBiD,EAAS,CAAC,EACVC,GAA6B,IAAI,IACjCC,GAAWC,GAAW,CAC1B,GAAI,CAACA,EACH,MAAO,GAET,IAAMC,EAAM,GAAGD,EAAO,OAAO,IAAIA,EAAO,KAAK,GACzCtE,EAAIoE,GAAW,IAAIG,CAAG,EAC1B,OAAIvE,IAAM,SACRA,EAAImE,EAAO,OACXC,GAAW,IAAIG,EAAKvE,CAAC,EACrBmE,EAAO,KAAKG,CAAM,GAEbtE,CACT,EACMS,EAAS6B,EAAE,OAAS,IAAIpB,GAAQ,CAAC,EAAI,OACvCb,EAAQ,IAAI,WAAW,CAAC,EACxBmE,EAAY,IAAI,aAAa,CAAC,EAC5BC,EAASC,GAAW,CACxB,IAAMC,EAAOzE,EAAMwE,EAAO,CAAC,CAAC,EACtBE,EAAU,CAAC,GAAGF,CAAM,EAAE,KAAK7B,EAAO,EACpCgC,EAAQD,EAAQ,OAAS,EACzBE,EAAgB,EACpB,QAAWnB,KAASiB,EAClBC,GAASzE,EAAGuD,CAAK,EAAIxD,EAAKwD,CAAK,GAAKzD,EAAMyD,CAAK,EAAE,SAAW,EAAI,GAChEmB,GAAiB5E,EAAMyD,CAAK,EAAE,UAAU,OAAS,EAE/CkB,EAAQxE,EAAM,SAChBA,EAAQ,IAAI,WAAWwE,EAAQ,CAAC,EAChCL,EAAY,IAAI,aAAaK,EAAQ,CAAC,GAExC,IAAIE,EAAS,EACTC,EAAW,GACXC,EACAC,EACEC,EAA0B,IAAI,IACpC,QAAWxB,KAASiB,EAAS,CAC3B,IAAMQ,EAASxC,EAAQe,CAAK,GACxByB,IAAW,QAAUH,IAAQ,QAAUG,EAASH,KAClDD,EAAW,IAETC,IAAQ,QAAUG,IAAW,QAAUA,EAASH,IAClDE,EAAQ,IACNJ,EACAM,GACED,EAASH,EACTC,IAAa,OAAS,OAAShF,EAAMgF,CAAQ,EAAE,MAC/ChF,EAAMyD,CAAK,EAAE,MACf,CACF,EACAtD,EAAM0E,CAAM,EAAI,EAAEK,EAASH,GAC3BT,EAAUO,GAAQ,EAAIE,GAExB,IAAIrB,EAAMwB,GAAU,EACdE,EAAWpF,EAAMyD,CAAK,EAAE,SAC9B,QAASE,EAAI1D,EAAKwD,CAAK,EAAG4B,EAAQnF,EAAGuD,CAAK,EAAGE,EAAI0B,EAAO1B,IAAK,CAC3D,IAAM5D,EAAOsC,EAAIsB,CAAC,EACZ2B,EAAMF,EAAWA,EAAS,IAAM1B,GAAOwB,GAAU,IAAM1C,EAASzC,CAAI,EAAI,EAC1EuF,EAAM,GAAK3B,IAAM0B,EAAQ,GAAK1B,EAAI1D,EAAKwD,CAAK,IAC9CwB,EAAQ,IAAIJ,EAAQ,CAAC,CAAE,GAAIS,EAAK,MAAO,UAAW,CAAC,CAAC,EACpDnF,EAAM0E,CAAM,EAAI,CAACS,EACjBhB,EAAUO,GAAQ,EAAInB,EACtBA,GAAO4B,GAETnF,EAAM0E,CAAM,EAAI9E,EAChBuE,EAAUO,GAAQ,EAAInB,EACtBA,GAAOlB,EAASzC,CAAI,CACtB,CACAgF,EAAMG,IAAW,OAAS,OAASxB,EACnCsB,EAAWvB,CACb,CACA,IAAM8B,GAAezF,GAAMA,GAAK,GAAKA,EAAI+E,GAAU1E,EAAML,CAAC,GAAK,GAAK,CAAC,OAAO,MAAMqD,EAAUhD,EAAML,CAAC,CAAC,CAAC,EAC/F0F,GAAW1F,GAAM,CACrB,IAAMD,EAAKM,EAAML,CAAC,EAClB,OAAOwE,EAAUxE,CAAC,GAAKD,EAAK,EAAI,CAACA,EAAK2C,EAAS3C,CAAE,EACnD,EACM4F,GAAc,CAACC,EAAIC,IAAO,CAC9B,IAAMC,EAAQF,GAAM,EAAIA,EAAKC,EACzBE,EAAO,GACX,QAASxE,EAAI,EAAGwE,EAAO,GAAKxE,EAAIwD,EAAQxD,IACtCwE,EAAO,CAACD,EAAQvE,EAAGuE,EAAQvE,CAAC,EAAE,KAAKkE,EAAW,GAAK,GAErD,GAAIM,EAAO,EACT,OAEF,IAAMC,EAAUD,EAAOD,GAAUzC,EAAUhD,EAAM0F,CAAI,CAAC,EAAI1C,EAAUhD,EAAMyF,CAAK,CAAC,EAC1EG,EAAQD,KAAaF,IAAUF,GAC/BM,EAAQD,EAAQlB,EAAS,EAAI,EAC7BoB,EAAaV,GAAYS,CAAK,EASpC,MAAO,CACL,KATY,CACZ,WAAAC,EACA,QAASA,EAAa,KAAK,IACzB,EACAzC,EAAI,MAAQJ,EAAQjD,EAAM6F,CAAK,CAAC,EAChC7C,EAAUhD,EAAM6F,CAAK,CAAC,EAAIxC,EAAI,GAChC,EAAI,CACN,EAGE,GAAIuC,EAAQH,EAAQ,EAAI,EACxB,GAAIG,EAAQlB,EAASe,EACrB,SAAU,CAACE,EACX,UAAWA,EAAUC,EAAQP,GAAQI,CAAK,EAAItB,EAAU,CAAC,EAAIyB,EAAQP,GAAQX,EAAS,CAAC,EAAIP,EAAUsB,CAAK,CAC5G,CACF,EACIM,GAAK,EACLC,GAAKtB,EACLuB,GAAW,GACXC,GAAW,GACXC,GAAY,GACZC,GAAU,GACVC,GACA5C,GACJ,GAAIJ,GAAOO,GAAS,CAClB,IAAI2B,EAAK,GACLC,EAAK,GACLc,EAAU,KACVC,EAAY,IAChB,QAAS5G,EAAI,EAAGA,EAAI+E,EAAQ/E,IAAK,CAC/B,IAAMD,EAAKM,EAAML,CAAC,EACdD,GAAM,GAAK,CAAC,OAAO,MAAMsD,EAAUtD,CAAE,CAAC,IACpCuD,EAAQvD,CAAE,GAAK2D,EAAI,OAASJ,EAAQvD,CAAE,EAAI4G,IAC5CA,EAAUrD,EAAQvD,CAAE,EACpB6F,EAAK5F,GAEHqD,EAAUtD,CAAE,GAAK2D,EAAI,KAAOL,EAAUtD,CAAE,EAAI6G,IAC9CA,EAAYvD,EAAUtD,CAAE,EACxB8F,EAAK7F,GAGX,CACA,GAAI4F,EAAK,GAAKC,EAAK,EAAG,CACpBU,GAAW,GACX,IAAMM,EAASjB,GAAM,GAAKC,GAAM,EAAIF,GAAYC,EAAIC,CAAE,EAAI,OACtDgB,IAED,CAAE,GAAAT,GAAI,GAAAC,GAAI,SAAAC,GAAU,UAAAI,GAAW,KAAA5C,EAAK,EAAI+C,EAE7C,MACET,GAAK,KAAK,IAAIR,EAAIC,CAAE,EAAI,EACxBQ,GAAK,KAAK,IAAIT,EAAIC,CAAE,EACpBS,GAAWV,EAAKC,EAChBW,GAAYZ,EACZa,GAAUZ,CAEd,CACA,IAAMiB,GAASnC,EAAK,QAAUoC,GAAYtH,GAAWkF,EAAK,IAAI,EAAE,IAAI,EAC9DqC,GAAOhC,GAAYD,IAAW,EAAI,OAAS2B,KAAc,OAAS,CAAE,OAAAI,GAAQ,MAAOJ,GAAW,SAAUJ,EAAS,EAAIE,GAAY,EAAI,CAAE,OAAAM,GAAQ,MAAOtC,EAAU,CAAC,EAAG,SAAU,EAAM,EAAIgC,GAAYC,GAAU,CAAE,OAAAK,GAAQ,MAAOpB,GAAQc,EAAS,EAAG,SAAU,EAAM,EAAI,CAAE,OAAAM,GAAQ,MAAOtC,EAAUgC,EAAS,EAAG,SAAU,EAAK,EAC/TS,GAAM,EACNC,GAAiB,EACjBC,GAAQ,EACRC,GAAO,EACPC,EAAO,GACPC,GAAY,EACZC,EAAU,OAAO,IACjBC,GAAS,OAAO,IACdC,GAAW1H,GAAO,CACtB,IAAMiE,EAAST,EAAS,IAAIxD,CAAE,EAC9B,GAAI,CAACiE,GAAU,OAAO,MAAMwD,EAAM,EAChC,OAAOnE,EAAUtD,CAAE,EAErB,IAAMgE,EAAMrB,EAAS3C,CAAE,EACnB2H,EAAO1D,EAAO,CAAC,EACf2D,EAAU,IACd,QAAWvC,KAAUpB,EAAQ,CAC3B,IAAM4D,EAAM,KAAK,IACf,KAAK,IAAIxC,EAASoC,EAAM,EACxB,KAAK,IAAIpC,EAASrB,EAAMyD,EAAM,CAChC,EACII,EAAMD,IACRD,EAAOtC,EACPuC,EAAUC,EAEd,CACA,OAAOF,CACT,EACM,CAAC,CAAEG,GAAOC,GAAQC,EAAQ,EAAI7D,EAAK,OACzC,QAAS8D,EAAI5B,GAAI4B,EAAI3B,GAAI2B,IAAK,CAC5B,IAAMpI,EAAQ0G,GAAWD,GAAK,GAAK2B,EAAI5B,IAAM4B,EACvCjI,EAAKM,EAAMT,CAAK,EACtB,GAAIG,EAAK,EAAG,CACV,IAAMkI,EAAQ9C,EAAQ,IAAIvF,CAAK,EAC/B,QAAWsI,MAAQ5B,GAAW,CAAC,GAAG2B,CAAK,EAAE,QAAQ,EAAIA,EACnD/D,EAAK,KACH+C,GACAiB,GAAK,GACL,OAAO,IACPrJ,GAAUG,GAAWkJ,GAAK,KAAK,EAC/B7D,GAAQ6D,GAAK,KAAK,CACpB,EACAjB,IAAOiB,GAAK,GAEdb,EAAOnD,EAAK,OAAS,EACrBoD,GAAYzI,GACZ0I,EAAU,OAAO,IACjBJ,IAAS,CAACpH,EACVqH,GAAO,EACP,QACF,CACA,IAAMrD,EAAMrB,EAAS3C,CAAE,EACjBkC,EAAKwF,GAAQ1H,CAAE,EACfoI,EAAK,CAAC,OAAO,MAAMlG,CAAE,EAC3BxB,GAAQ,KAAKV,EAAIkH,GAAKlD,EAAKoE,EAAK,EAAI,CAAC,EACrC,IAAMC,EAASf,GAAQ,GAAK,CAAC,OAAO,MAAME,CAAO,EAC3CvB,EAAUmC,GAAMC,GAAUhB,IAAQ,GAAKG,GAAWM,GAAMR,CAAI,GAAK,KAAOpF,EACxEoG,GAAOF,GAAMC,GAAUhB,IAAQ,GAAKnF,EAAK8B,IAAQwD,EACnD,CAACY,GAAMd,GAAQ,GAAK,EAAEC,IAAa3I,GAAmBE,KACxDgJ,GAAMR,CAAI,GAAKtD,EACNiC,GAAWqC,IACpBR,GAAMR,CAAI,GAAKtD,EACViC,IACHuB,EAAUtF,EACV6F,GAAOT,CAAI,EAAIpF,EACfqF,IAAa1I,GACbmJ,GAASV,CAAI,EAAIC,IAEnBF,GAAOpB,EAAU,EAAI,KAErBsB,GAAYa,EAAKxJ,GAAmB,EACpC4I,EAAUY,EAAKlG,EAAK,OAAO,IAC3BiC,EAAK,KAAK+C,GAAKlD,EAAKwD,EAASD,GAAW,EAAE,EAC1CD,EAAOnD,EAAK,OAAS,EACrBkD,GAAO,GAETH,IAAOlD,EACHoE,EACFX,GAASJ,GAAO,EAAInF,EAAKA,EAAK8B,EAE9BmD,IAAkBnD,CAEtB,CACA,OAAAG,EAAK,OAAO,EACZzD,GAAQ,OAAO,EACR,CACL,KAAMkE,EAAK,KACX,MAAO1D,GAAQ0D,CAAI,EACnB,OAAQ5D,GAAS4D,CAAI,EACrB,UAAWA,EAAK,UAChB,GAAIsC,GACJ,eAAAC,GACA,MAAAC,GACA,SAAAZ,GACA,KAAAzC,GACA,KAAAkD,GACA,GAAGlC,EAAgB,EAAI,CAAE,cAAAA,CAAc,EAAI,CAAC,CAC9C,CACF,EACMwD,GAAe7D,EAAMzB,CAAe,EACpCuF,EAAO,CAAC,GAAGpF,GAAM,OAAO,CAAC,EAAE,IAAI,CAACuB,EAAQ1E,KAAO,CACnD,KAAMyE,EAAMC,CAAM,EAClB,IAAK1E,EAAI,CACX,EAAE,EACIwI,EAAQ,CAACF,GAAc,GAAGC,EAAK,IAAKE,GAAMA,EAAE,IAAI,CAAC,EACvD,GAAI,IAAI,IAAID,EAAM,IAAKzG,GAAMA,EAAE,KAAK,CAAC,EAAE,KAAOyG,EAAM,OAClD,QAAWE,KAAQF,EACjBE,EAAK,MAAQC,GAAeD,EAAK,IAAI,GAAKA,EAAK,MAGnDH,EAAK,KACH,CAACnH,EAAGC,IAAM,OAAOA,EAAE,KAAK,QAAQ,EAAI,OAAOD,EAAE,KAAK,QAAQ,GAAKC,EAAE,KAAK,GAAKD,EAAE,KAAK,IAAMA,EAAE,KAAK,MAAM,cAAcC,EAAE,KAAK,KAAK,CACjI,EACA,IAAMK,GAAQ,CAAC,EAAG,GAAG6G,EAAK,IAAKE,GAAMA,EAAE,GAAG,CAAC,EACrC,CAAE,QAAA7G,GAAS,QAAAE,CAAQ,EAAIoC,EAAK,QAAQxC,GAAO,CAC/CQ,GACAA,GACAA,GACCxC,GAAM,IAAI,WAAWA,CAAC,EACtBA,GAAM,IAAI,WAAWA,CAAC,CACzB,CAAC,EACK,CAACkJ,EAAOC,EAAIC,EAAgBC,EAAOC,CAAK,EAAIlH,EAClD,MAAO,CACL,OAAQ4B,EAAMA,EAAI,MAAQd,EAAQK,EAAK,GAAK,EAC5C,KAAM,CAACqF,GAAc,GAAGC,EAAK,IAAKE,GAAMA,EAAE,IAAI,CAAC,EAC/C,QAAA7G,GACA,MAAAgH,EACA,GAAAC,EACA,eAAAC,EACA,MAAAC,EACA,MAAAC,EACA,OAAA7E,EACA,OAAQ1D,GAAUwI,GAAaxI,EAAQiB,GAAOvC,CAAK,CACrD,CACF,CACA,SAAS8J,GAAaxI,EAAQiB,EAAOvC,EAAO,CAC1C,GAAM,CAAE,QAAAyC,EAAS,QAAAE,CAAQ,EAAIrB,EAAO,QAAQiB,EAAO,CAChDhC,GAAM,IAAI,WAAWA,CAAC,EACvBwC,GACAA,GACCxC,GAAM,IAAI,WAAWA,CAAC,CACzB,CAAC,EACK,CAACO,EAAM2I,EAAOC,EAAIpD,CAAW,EAAI3D,EACvC,MAAO,CAAE,QAAAF,EAAS,KAAA3B,EAAM,MAAA2I,EAAO,GAAAC,EAAI,YAAApD,EAAa,MAAAtG,CAAM,CACxD,CACA,SAAS+J,GAAM,EAAGlB,EAAG,CACnB,IAAMmB,EAAI,EAAE,MAAMnB,CAAC,EACboB,EAAM,CACV,MAAO,EAAE,MAAMpB,CAAC,EAChB,GAAI,EAAE,GAAGA,CAAC,EACV,aAAcmB,EAAIxK,MAAsB,CAC1C,EACA,GAAIwK,EAAItK,GAAS,CACfuK,EAAI,IAAM,GACV,IAAMnK,EAAQH,GAAWqK,GAAKpK,GAAc,CAAC,EACzCE,IACFmK,EAAI,MAAQnK,GAEd,IAAM+J,EAAQ,EAAE,OAAO,EAAE,MAAMhB,CAAC,CAAC,EAC7BgB,IACFI,EAAI,MAAQJ,EAEhB,MACEI,EAAI,eAAiB,OAAO,MAAM,EAAE,eAAepB,CAAC,CAAC,EAAI,OAAS,EAAE,eAAeA,CAAC,EAEtF,OAAImB,EAAIvK,KACNwK,EAAI,SAAW,IAEVA,CACT,CACA,SAASC,GAAS5H,EAAGI,EAAK,CACxB,IAAMG,EAAM,CAAC,EACb,QAASgG,EAAIvG,EAAE,QAAQI,CAAG,EAAGmG,EAAIvG,EAAE,QAAQI,EAAM,CAAC,EAAGmG,IACnDhG,EAAI,KAAK,CACP,KAAMP,EAAE,MAAMA,EAAE,KAAKuG,CAAC,CAAC,EACvB,MAAOvG,EAAE,MAAMuG,CAAC,EAChB,GAAIvG,EAAE,GAAGuG,CAAC,EACV,YAAavG,EAAE,YAAYuG,CAAC,IAAM,CACpC,CAAC,EAEH,OAAOhG,CACT,CACA,SAASsH,GAAW,EAAGC,EAAM,CAC3B,IAAMhB,EAAO,EAAE,KAAK,IAAI,CAACG,EAAM1I,IAAM,CACnC,IAAMkE,EAAO,CAAC,EACd,QAAS8D,EAAI,EAAE,QAAQhI,CAAC,EAAGgI,EAAI,EAAE,QAAQhI,EAAI,CAAC,EAAGgI,IAC/C9D,EAAK,KAAKgF,GAAM,EAAGlB,CAAC,CAAC,EAEvB,MAAO,CACL,GAAGU,EACH,KAAAxE,EACA,OAAQ,EAAE,QAAUmF,GAAS,EAAE,OAAQrJ,CAAC,CAC1C,CACF,CAAC,EACD,MAAO,CAAE,OAAQ,EAAE,OAAQ,KAAAuJ,EAAM,UAAWhB,EAAK,CAAC,EAAG,KAAMA,EAAK,MAAM,CAAC,CAAE,CAC3E",
+  "names": ["START_STOP_TAG", "END_STOP_TAG", "STOP_KINDS", "GAP_CAUSE_TEXT", "OUTSIDE_TEXT", "gapParts", "bp", "after", "before", "left", "right", "rest", "lead", "trail", "elsewhere", "s", "part", "stopAt", "table", "i", "ref", "stopOf", "kind", "trimmed", "chunk", "cut", "parseStopTag", "value", "kind", "fields", "bp", "trimmed", "chunk", "field", "at", "stopOf", "stopFields", "before", "after", "walkStopFields", "tags", "START_STOP_TAG", "END_STOP_TAG", "StopColumns", "stop", "STOP_KINDS", "chunk", "ref", "pLineName", "name", "start", "end", "tablePath", "w", "p", "walkName", "fields", "panSNFields", "steps", "abridged", "stopFields", "stopAt", "namesByList", "lists", "names", "listCount", "pathNames", "starts", "list", "i", "fill", "grouped", "listed", "_", "out", "k", "tableNodeIds", "n", "l", "traversals", "canonical", "claim", "node", "reversed", "stepCount", "s", "segment", "graphFromTables", "count", "declared", "drawnWalks", "ids", "nodes", "ref", "edges", "neighbours", "pairList", "b", "near", "j", "addPair", "edgeLists", "a", "adjacency", "adjacentNode", "adjacentList", "listOf", "nameIndex", "crossedList", "crossedName", "crossings", "lastWalk", "paths", "anchorPaths", "totalSteps", "visitPath", "visitStart", "visitReversed", "visitOrder", "blocks", "pathSamples", "edgeNameIndex", "edgeNames", "head", "pathName", "visitName", "named", "panSNSample", "edgeNamed", "visitSample", "first", "nodeIds", "pos", "prev", "at", "listNames", "edge", "walked", "PathVisits", "RUN_ON_REFERENCE", "RUN_REVERSED", "RUN_GAP", "GAP_CAUSES", "CAUSE_SHIFT", "causeFlags", "cause", "referenceOf", "names", "referencePath", "rankZero", "referenceWalkName", "graph", "p", "pathOrigin", "n", "graphPieces", "index", "lengths", "indexOf", "id", "i", "node", "heads", "from", "to", "steps", "path", "tablePieces", "tables", "visits", "w", "kept", "tablePath", "tableNodeIds", "h", "sampleOf", "panSNSample", "labelOf", "Columns", "width", "a", "b", "c", "d", "e", "v", "order", "make", "offsets", "row", "columns", "m", "out", "at", "float64", "walkRowRuns", "source", "region", "o", "all", "reference", "declared", "lengthOf", "nameOf", "startOf", "byStart", "pieceIds", "_", "referencePieces", "first", "others", "walks", "groupBy", "spanStart", "spanEnd", "revisits", "reachesBefore", "reachesAfter", "cut", "piece", "pos", "s", "stop", "len", "starts", "flanked", "runs", "chunks", "chunkIndex", "chunkOf", "chunk2", "key", "stepStart", "rowOf", "pieces", "head", "ordered", "count", "abridgedSteps", "length", "unplaced", "end", "previous", "partsAt", "start2", "gapParts", "abridged", "stop2", "bp3", "onReference", "stepEnd", "partialSide", "i0", "i1", "flank", "near", "forward", "after", "last2", "contigEnds", "lo", "hi", "backward", "complete", "flankFrom", "flankTo", "axisStart", "bestEnd", "bestStart", "inside", "contig", "panSNContig", "axis", "bp2", "offReferenceBp", "gapBp", "step", "last", "lastFlags", "lastRef", "cursor", "placeOf", "best", "bestGap", "gap", "runBp", "runRef", "runFlags", "k", "parts", "part", "on", "placed", "back", "referenceRow", "rows", "metas", "r", "meta", "panSNHaplotype", "start", "bp", "referenceStart", "flags", "chunk", "visitColumns", "runAt", "f", "run", "visitsOf", "walkRowsOf", "unit"]
 }

package/dist/chunks/chunk-GRTN25B6.js ADDED Viewed

@@ -0,0 +1,3 @@
+import{b as jn,g as _o,h as $o,j as ct,k as dt,l as Ho,m as Wo}from"./chunk-7RJMG6I2.js";import{$ as ot,$b as it,A as Xn,Aa as no,B as Je,Ba as oo,C as Vn,D as qe,Da as ro,Db as ko,E as Ct,Ea as so,Eb as xo,Fb as Dt,Gb as Ro,Ha as ce,Hb as So,I as Bt,J as Ze,Ja as io,Jb as vo,L as Ot,M as Pe,Mb as ee,N as Qe,O as K,Ob as Mo,P as et,Pb as Lo,Qb as No,R as tt,Ra as co,Rb as Po,S as nt,Sb as Ao,Tb as To,U as _t,Ub as Go,Vb as Eo,W as B,Wa as po,Xb as Io,Yb as Co,Z as Ae,Zb as Bo,_ as Te,_b as Oo,aa as Yn,b as Ln,bb as lo,bc as Fo,cc as Do,d as Pt,db as mo,ea as Jn,eb as uo,fa as rt,fb as ho,ga as qn,gb as fo,h as Gt,i as Gn,ia as Zn,j as Et,ja as Qn,k as En,l as In,lb as go,m as Me,n as ue,ob as Ft,q as Le,qb as wo,r as Q,ra as eo,rb as bo,s as ie,sb as yo,ta as to,ua as Wt,x as Dn,xa as Ge}from"./chunk-WLRRI35A.js";import{A as zn,B as Un,C as Kn,D as Ht,a as Z,b as It,c as Cn,d as Bn,e as On,g as _n,i as $n,p as Ue,s as Hn,t as Ne,u as Wn,v as Fn,w as Ke,z as $t}from"./chunk-VZQ6VOUP.js";import{A as Se,B as An,D as Tn,K as je,N as ve,O as Ye,T as ze,a as j,b as ye,i as ke,n as xe,o as se,p as At,r as Nn,s as Pn,v as Tt,z as Re}from"./chunk-S333HOG5.js";import{b as at,c as st,e as ao}from"./chunk-P3FBI5ML.js";import{b as St,c as vt,d as Mt,f as Lt}from"./chunk-6WUWQX2P.js";import{e as Rn,l as Mn,m as Nt}from"./chunk-G53BI7VK.js";import{a as bn,b as yn,d as kn,f as le,g as I,h as we,i as q,j as kt,k as ae,l as xt,m as Rt,n as be,r as H,w as vn}from"./chunk-LE7FZM6Y.js";import{d as V}from"./chunk-JRJHXLGP.js";import{a as me,c as xn,d as Ve}from"./chunk-6SWXMRAV.js";import{d as Sn}from"./chunk-IKJZPPOA.js";import{f as gn,g as yt,h as wn,j as U}from"./chunk-TENPGIPX.js";import{b as D}from"./chunk-JMBDTNUR.js";var de=JBrowseExports["@mui/material/SvgIcon"],Kr=e=>de!=null&&e in Object(de)?de[e]:Object.assign(function(){throw new Error("This JBrowse does not provide '"+e+"' from '@mui/material/SvgIcon' to plugins: GraphGenomeView was built for a different JBrowse version, so update the plugin or JBrowse")},{jbrowseHostMissing:e}),W=Kr("createSvgIcon"),ds=de&&de.__esModule?de.default:de;function Xo(e){if(typeof e!="object"||e===null)return!1;let t=e;return typeof t.horizontalScroll=="function"&&typeof t.zoomTo=="function"&&"coarseDynamicBlocks"in t&&"dynamicBlocks"in t}function Vo(e){return e.reduce((t,n)=>t&&t.end-t.start>=n.end-n.start?t:n,void 0)}function jo(e,t){let n=Vo(e.dynamicBlocks.contentBlocks.filter(r=>r.refName===t.refName&&r.assemblyName===t.assemblyName)),{bpPerPx:o}=e;if(!n||!(o>0))return;let a=n.offsetPx-e.offsetPx;return n.reversed?{scale:-1/o,translateX:a+n.end/o}:{scale:1/o,translateX:a-n.start/o}}function us(e){let t=Vo(e.dynamicBlocks.contentBlocks),n=t?.displayedRegionIndex===void 0?void 0:e.displayedRegions[t.displayedRegionIndex];return t&&e.bpPerPx>0?{refName:t.refName,assemblyName:t.assemblyName,start:t.start,end:t.end,bpPerPx:e.bpPerPx,span:e.bpPerPx*e.width,regionStart:n?.start??t.start,regionEnd:n?.end??t.end}:void 0}function Jr(e,t,n=!0){let o=e.end-e.start,a=n?Math.max(0,Math.min(e.span,(t-o)/2)):0,r=Math.max(e.regionStart,Math.floor(e.start-a)),s=Math.min(e.regionEnd,Math.ceil(e.end+a)),i=s-r-t;return i>0&&(r+=Math.floor(i/2),s-=Math.ceil(i/2)),{refName:e.refName,assemblyName:e.assemblyName,start:r,end:s}}function hs(e,t,n=!0){if(e?.refName!==t.refName||e.assemblyName!==t.assemblyName)return!1;if(n)return e.start<=t.start+1&&t.end<=e.end+1;let o=Jr(t,1/0,!1);return Math.abs(e.start-o.start)<1&&Math.abs(e.end-o.end)<1}var qr=/^[^#]+#\d+$/;function Zr(e,t){let n=e.assemblyNameToPanSN??{},o=new Set(Object.values(n)),a={};for(let{name:r,aliases:s}of t){let i=s.find(c=>qr.test(c));i!==void 0&&!o.has(i)&&(a[r]=i)}return Object.keys(a).length===0?e:{...e,assemblyNameToPanSN:{...a,...n}}}function Qr(e,t){let n=s=>t.find(i=>i.name===s||i.aliases.includes(s))?.name??s,o=e.assemblyNames??[],a=e.assemblyNameToPanSN??{};if([...o,...Object.keys(a)].every(s=>n(s)===s))return e;let r=new Map;for(let[s,i]of Object.entries(a)){let c=n(s);(c===s||!r.has(c))&&r.set(c,i)}for(let s of o){let i=n(s);i!==s&&!r.has(i)&&r.set(i,s)}return{...e,assemblyNames:o.map(n),assemblyNameToPanSN:Object.fromEntries(r)}}var ea=new Set(["GbzBaseSyntenyAdapter","WalkTabixSyntenyAdapter"]);function Yo(e,t){let n=V(t,"adapter");if(!ea.has(n.type)&&!jn(n))return n;let o=U(e).assemblyManager.assemblyList.map(a=>({name:V(a,"name"),aliases:V(a,"aliases")??[]}));return Zr(Qr(n,o),o)}var ta=1,na=.015;function pt({graph:e,span:t,rowY:n,positions:o}){let a=t*na,r=In(e),s=new Map(e.nodes.map(m=>[m.id,m])),i=[];for(let m of r){let p=m.refSpan-m.pathLength;p>=ta&&i.push({nodeIds:m.nodeIds,bp:p});let l=Math.max(m.refSpan,a),u=m.pathLength>0?l/m.pathLength:0;m.nodeIds.forEach((h,f)=>{let g=s.get(h);if(g){let w=m.nodeOffsets[f],x=l/m.nodeIds.length,v=k=>m.start+k*u,y=n(g);o[h]=u?[{x:v(w),y},{x:v(w+g.length),y}]:[{x:m.start+f*x,y},{x:m.start+(f+1)*x,y}]}})}let c=Z(e),d=Object.keys(o);for(let m of d){let p=o[m].at(-1).x;for(let l of c.get(m)??[]){let u=s.get(l);if(u&&!(l in o)){let h=n(u);o[l]=[{x:p,y:h},{x:p+a,y:h}],d.push(l)}}}return i}function oa(e,t){let n=new Map;for(let a of e.nodes)if(we(a)){let r=me(a.stable.refName);n.set(r,(n.get(r)??0)+a.length)}let o=new Map(t.map((a,r)=>[a,r]));return[...n.keys()].sort((a,r)=>(o.get(a)??1/0)-(o.get(r)??1/0)||n.get(r)-n.get(a)||a.localeCompare(r))}function zo(e,t,n=[]){let o=q(e),a=oa(e,n);if(o.length===0||a.length===0)return;let r=be(o,t),s=new Map(a.map((l,u)=>[l,u+1])),i=ae(o),c=a.length+1,d=pt({graph:e,span:r,rowY:l=>{let u=l.stable;return((u?s.get(me(u.refName)):void 0)??c)*j},positions:i}),p=[{label:me(o[0].stable.refName),y:0},...a.map(l=>({label:l,y:s.get(l)*j}))];return{nodePositions:i,rowLabels:p,sampleRows:a,referenceAxis:!0,pixelRows:!0,alleleDeletions:d}}function ra(e){let t=new Set;for(let n of e.nodes)n.stable&&t.add(n.stable.rank);return new Map([...t].sort((n,o)=>n-o).map((n,o)=>[n,o]))}function Uo(e,t){let n=q(e);if(n.length===0)return;let o=be(n,t),a=ra(e),r=ae(n),s=pt({graph:e,span:o,rowY:c=>(c.stable?a.get(c.stable.rank)??a.size:a.size)*j,positions:r}),i=[...a].map(([c,d])=>({label:c===0?"Reference (rank 0)":`Rank ${c}`,y:d*j}));return{nodePositions:r,rowLabels:i,referenceAxis:!0,pixelRows:!0,alleleDeletions:s}}var aa=12,Xt=j;function Ko(e){return 10+8*Math.log2(1+e.length)}function te(e,t){return e<t?-1:e>t?1:0}function qo(e,t){return te(e.at,t.at)||te(e.side,t.side)||te(e.hops,t.hops)}var Jo={at:1/0,side:0,hops:0};function Vt(e){let t=new Map(e.nodes.map(o=>[o.id,o])),n=ca(e);return e.nodes.map(o=>o.id).sort((o,a)=>qo(n.get(o)??Jo,n.get(a)??Jo)||te(t.get(o).name,t.get(a).name)||te(o,a))}function sa(e,t){let n=new Set(e.nodes.map(m=>m.id)),o=new Map(t.map(m=>[m.id,m.stable.start])),a=new Map,r=new Map;t.forEach((m,p)=>{r.set(m.id,t[p-1]?.id),a.set(m.id,t[p+1]?.id)});let s=t[0]?.id,i=(m,p)=>{let l=a.get(m);a.set(m,p),r.set(p,m),a.set(p,l),l!==void 0&&r.set(l,p)},c=(m,p)=>{let l=r.get(m);l===void 0?(s=p,r.set(p,void 0),a.set(p,m),r.set(m,p)):i(l,p)};for(let m of e.paths??[]){let p=0,l=0,u;for(let w of m.nodeIds){let x=o.get(w);x!==void 0&&(u!==void 0&&x!==u&&(x>u?p++:l++),u=x)}let h=l>p?[...m.nodeIds].reverse():m.nodeIds,f,g=new Set;for(let w of h)if(a.has(w)){if(f===void 0)for(let x of g)c(w,x);f=w}else n.has(w)&&(f===void 0?g.add(w):(i(f,w),f=w))}let d=[];for(let m=s;m!==void 0;m=a.get(m))d.push(m);return d}function ia(e,t,n){let o=[...t.entries()].sort(([i,c],[d,m])=>qo(c,m)||te(i,d)).map(([i])=>i),a=o.length;for(let i of o){let c=t.get(i);for(let d of e.get(i)??[])n.has(d)&&!t.has(d)&&(t.set(d,{at:c.at,side:1,hops:c.hops+1}),o.push(d))}let r=new Set(o.slice(a)),s=new Set;for(let i of r){if(s.has(i))continue;let{at:c}=t.get(i),d=[i];s.add(i);let m=!0;for(let p of d){let{hops:l}=t.get(p),u=!0,h=!1;for(let f of e.get(p)??[]){let g=t.get(f);g&&(g.at===c&&r.has(f)?(u&&=g.hops<=l,s.has(f)||(s.add(f),d.push(f))):g.at!==c&&(h||=g.at<c,m&&=g.at<c))}m&&=!u||h}if(m)for(let p of d){let l=t.get(p);t.set(p,{...l,side:-1,hops:-l.hops})}}}function ca(e){let t=e.nodes.filter(I).sort((o,a)=>te(o.stable.start,a.stable.start)||te(o.name,a.name)),n=new Map;return sa(e,t).forEach((o,a)=>{n.set(o,{at:a,side:0,hops:0})}),ia(Z(e),n,new Set(e.nodes.map(o=>o.id))),n}function da(e){let t=new Map(e.nodes.map(p=>[p.id,p])),n=Vt(e),o=new Map(n.map((p,l)=>[p,l])),a=p=>I(t.get(p)),r=new Map(n.map(p=>[p,[]])),s=new Map(n.map(p=>[p,[]])),i=(p,l)=>{r.get(l).push(p),s.get(p).push(l)};for(let p of e.edges)p.from===p.to||!o.has(p.from)||!o.has(p.to)||(o.get(p.from)<o.get(p.to)?i(p.from,p.to):i(p.to,p.from));let c=n.filter(a);for(let p=1;p<c.length;p++)i(c[p-1],c[p]);let d=new Map;for(let p of n){let l=0;for(let u of r.get(p))l=Math.max(l,d.get(u)+1);d.set(p,l)}for(let p=n.length-1;p>=0;p--){let l=n[p],u=s.get(l);if(a(l)||u.length===0)continue;let h=1/0;for(let w of u)h=Math.min(h,d.get(w));let f=d.get(l),g=Math.max(f,h-1);d.set(l,Math.floor((f+g)/2))}let m=[];for(let p of n)(m[d.get(p)]??=[]).push(p);return{layers:m,layerOf:d,preds:r}}function Zo(e){if(!e.nodes.some(I))return;let t=new Map(e.nodes.map(p=>[p.id,p])),n=p=>I(t.get(p)),{layers:o,layerOf:a,preds:r}=da(e),s=o.map(p=>{let l=0;for(let u of p)l=Math.max(l,Ko(t.get(u)));return l}),i=[],c=0;for(let p=0;p<o.length;p++)i[p]=c,c+=s[p]+aa;let d=new Map;for(let p of o){let l=[];for(let h of p){if(n(h)){d.set(h,0);continue}let f=r.get(h).filter(w=>d.has(w)),g=0;for(let w of f)g+=d.get(w)/f.length;l.push({id:h,ideal:g===0?Xt:g})}l.sort((h,f)=>h.ideal-f.ideal);let u=new Set([0]);for(let{id:h,ideal:f}of l){let g=Math.round(f/Xt);g===0&&(g=f>=0?1:-1);for(let w=1;u.has(g);w++)u.has(g+w)?u.has(g-w)||(g-=w):g+=w;u.add(g),d.set(h,g*Xt)}}let m={};for(let p of e.nodes){let l=a.get(p.id),u=Ko(p),h=i[l]+s[l]/2,f=d.get(p.id);m[p.id]=[{x:h-u/2,y:f},{x:h+u/2,y:f}]}return{nodePositions:m,referenceAxis:!1,pixelRows:!0}}var lt=1.3;function mt(e){return Math.max(e.reference.bp,...e.rows.map(t=>t.bp))}function he(e,t={rowPx:j,readouts:!0}){return{maxX:e.origin+mt(e)*(t.readouts?lt:1),maxY:e.rows.length*t.rowPx}}function fe(e,t,n){return e?n&&!n.labelled?[]:[e.reference,...e.rows].map((o,a)=>({label:o.label,y:a*(n?.rowPx??j)})):t?.rowLabels??[]}function jt(e,t){let n=ue(e,t);return n&&Qo(e,n,t)}function Qo(e,t,n){let o=q(e);if(o.length===0)return;let a=n?o.filter(s=>kt(s,n)):o;return{nodePositions:ae(a.length>0?a:o),rowLabels:fe(t),referenceAxis:!0,pixelRows:!0,extent:he(t)}}var nr="Force-directed layout",ge=e=>e.nodes.some(I),er=e=>ge(e)&&(e.paths?.length??0)>1,tr=e=>ge(e)&&e.nodes.some(we),ut=[{value:"auto",label:"Anchored",description:"x is reference bp, one row per stable rank. Needs rGFA tags or a reference path.",run:Uo,cutMargins:!0,wholeWalks:!1,available:ge,drawsLocally:ge,drawsNodes:!0},{value:"samplerows",label:"Sample rows",description:"x is reference bp, one row per contributing assembly. Needs rGFA tags or a reference path.",run:zo,cutMargins:!0,wholeWalks:!1,available:tr,drawsLocally:tr,drawsNodes:!0},{value:"walkrows",label:"Walk rows",description:"x is each walk's own bp: one bar per haplotype, blue on the reference's path and purple off it, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs a reference and two or more walks.",run:jt,cutMargins:!1,wholeWalks:!0,available:er,drawsLocally:er,drawsNodes:!1},{value:"ordered",label:"Ordered",description:"x is reference order, not bp: every node gets room, bubbles read as lenses. Needs rGFA tags or a reference path.",run:Zo,cutMargins:!1,wholeWalks:!1,available:ge,drawsLocally:ge,drawsNodes:!0},{value:"tubemap",label:"Tube map",description:"sequenceTubeMap: every path a coloured tube through boxed nodes, columns in node order and node widths log-scaled. Needs P or W lines.",run:Gn,cutMargins:!1,wholeWalks:!1,available:Gt,drawsLocally:Gt,drawsNodes:!1},{value:"tubemapref",label:"Tube map on reference",description:"The tube map with each column at the reference bp it covers, so the tubes line up with the tracks around them. Needs P or W lines and a reference path.",run:En,cutMargins:!0,wholeWalks:!1,available:Et,drawsLocally:Et,drawsNodes:!1},{value:"force",label:nr,description:"OGDF FMMM (wasm) or stress, whichever engine is chosen.",run:()=>{},cutMargins:!1,wholeWalks:!1,available:()=>!0,drawsLocally:()=>!1,drawsNodes:!0}],pa=ut.map(e=>e.value);function Yt(e,t){return!Y(e).drawsLocally(t)}function Y(e){return ut.find(t=>t.value===e)??ut[0]}function zt(e){return e.walkStrip&&e.mode.drawsNodes&&!e.drawsPicture&&!e.popped&&!e.host&&e.walks>1}function Ut(e,t){return e.wholeWalks||t.walkStrip&&!t.host}var Ee=6,ar=260,la=11,ma=3,ua="#111",or=3;function Kt(e,t,n){let o=e.pathVisits?.get(n.name)??[],a=[];for(let r of t){let s=r.axis;if(!s)continue;let i=H(r.name).name;for(let c of o){if(c.path!==i)continue;let{start:d,end:m}=Xn(s,c.start,c.start+n.length);m>0&&d<r.bp&&a.push({row:r.name,start:d,bp:m-d})}}return a}var rr=new WeakMap;function ha(e,t){let n=rr.get(e);if(n||(n=new Map,rr.set(e,n)),n.has(t))return n.get(t);let o=new Map(e.nodes.map(i=>[i.id,i.length])),a=H(t).name,r=(e.paths??[]).filter(i=>H(i.name).name===a),s;if(r.every(i=>i.start!==void 0)){s={ids:[],starts:[],ends:[]};for(let i of[...r].sort((c,d)=>c.start-d.start)){let c=i.start;for(let d of i.nodeIds){let m=o.get(d)??0;s.ids.push(d),s.starts.push(c),s.ends.push(c+m),c+=m}}}return n.set(t,s),s}function fa(e,t,n,o){let a=t.axis,r=a&&ha(e,t.name);if(!a||!r||n<0||n>t.bp)return;let s=a.reversed?a.start-n:a.start+n,i=.5/o,c=Je(a,t.bp),d=Math.max(s-i,c.start),m=Math.min(s+i,c.end),p=kn(r.starts.length,f=>r.ends[f]<=d),l,u=-1,h=!1;for(let f=p;f<r.starts.length&&r.starts[f]<m;f++){let g=r.ends[f]-r.starts[f],w=r.starts[f]<=s&&s<r.ends[f];(g>u||g===u&&w&&!h)&&(u=g,l=r.ids[f],h=w)}return l}function Ie(e,t){let n=t.maxHeight??ar,o=t.labelPx??Math.max(...[e.reference,...e.rows].map(u=>u.label.length))*se+16,a=e.rows.length+1,{rowPx:r,barPx:s,labelled:i,readouts:c}=Ze(a,n-2*Ee,ma),d=Math.max(mt(e),1),m=i?o:Ee,l=Math.max(1,t.width-m-Ee)/(d*(c?lt:1));return{scaleX:l,scaleY:1,translateX:m-e.origin*l,translateY:Ee+r/2,width:t.width,height:a*r+2*Ee,rowPx:r,barPx:s,readouts:c,labelled:i,boxesGenes:qe(r,s)}}function ga(e,t,n,o){let a=Math.round((o-t.translateY)/t.rowPx),r=[e.reference,...e.rows][a],s=(n-t.translateX)/t.scaleX-e.origin;return r&&a>=0&&s>=0&&s<=r.bp?{index:a,row:r,offset:s}:void 0}function wa(e,t,n){let o=new Map([e.reference,...e.rows].map((r,s)=>[r.name,s])),a=r=>(e.origin+r)*t.scaleX+t.translateX;return Le("g",{"data-testid":"graph-walk-marks"},...n.flatMap(r=>{let s=o.get(r.row);if(s===void 0)return[];let i=s*t.rowPx+t.translateY,c=a(r.start),d=Math.max(2,r.bp*t.scaleX),m=p=>Le("rect",{x:c,y:p,width:d,height:or,fill:ua});return[m(i-t.barPx/2-or-1),m(i+t.barPx/2+1)]}))}function Jt(e,t,n=new Set){return Le("g",{"font-family":"sans-serif","font-size":la,fill:"#333"},...(t.labelled?[e.reference,...e.rows]:[]).map((o,a)=>Le("text",{x:6,y:a*t.rowPx+t.translateY+4,"font-weight":n.has(o.name)?600:void 0},o.label)))}function qt(e,t,n){if(t?.size)return e.boxesGenes?n:{untracked:0,unread:0,...n,crowded:!0}}function ne(e){return`${e.refName}:${(e.start+1).toLocaleString()}-${e.end.toLocaleString()}`}function ba(e,t,n=o=>o){return t?{deletion:{bp:`${t.bp.toLocaleString()} bp`,where:ne(t)}}:{ends:`${n(e.from)}${e.fromStrand??""} \u2192 ${n(e.to)}${e.toStrand??""}`}}function sr(e){return le(e)?ir(e):void 0}function ir(e){return{sample:me(e.stable.refName),haplotype:xn(e.stable.refName),refName:Ve(e.stable.refName),start:e.stable.start,end:e.stable.start+e.length}}function ya(e,t){let n=[...e].sort((r,s)=>r.start-s.start),o,a;for(let r of n)a=a&&r.start-a.end<=t?{start:a.start,end:Math.max(a.end,r.end)}:{start:r.start,end:r.end},(!o||a.end-a.start>o.end-o.start)&&(o=a);return o}function ka(e){return`${e.haplotype??e.sample}\0${e.refName}`}function cr(e,{maxGap:t=1/0}={}){let n=new Map;for(let a of e.nodes)if(le(a)){let r=ir(a),s=ka(r),i=n.get(s);i?(i.spans.push({start:r.start,end:r.end}),i.rank=Math.min(i.rank,a.stable.rank)):n.set(s,{sample:r.sample,haplotype:r.haplotype,refName:r.refName,rank:a.stable.rank,spans:[{start:r.start,end:r.end}]})}let o=new Map;for(let a of n.values()){let r=ya(a.spans,t);if(r){let s={sample:a.sample,haplotype:a.haplotype,refName:a.refName,start:r.start,end:r.end,rank:a.rank,nodeCount:a.spans.length},i=a.haplotype??a.sample,c=o.get(i);(!c||s.nodeCount>c.nodeCount)&&o.set(i,s)}}return[...o.values()].sort((a,r)=>+(a.rank!==0)-+(r.rank!==0)||a.sample.localeCompare(r.sample)||(a.haplotype??"").localeCompare(r.haplotype??""))}function Ce(e,t){return(t.haplotype===void 0?void 0:e(t.haplotype))??e(t.sample)}function dr(e,t){return e.flatMap(n=>{let o=Ce(t,n);return o===void 0?[]:[{...n,sample:o}]})}function ht(e){return`${e.refName}:${e.start+1}-${e.end}`}function z(e){return typeof e=="object"&&e!==null}function xa(e){return z(e)&&e.type==="LinearGenomeView"&&typeof e.id=="string"&&typeof e.navToLocString=="function"&&Array.isArray(e.assemblyNames)}function Ra(e){return e.flatMap(t=>z(t)&&Array.isArray(t.views)?[t,...t.views]:[t])}function Be({views:e,connectedViewId:t,assemblyName:n}){let o=Ra(e).filter(r=>xa(r)).filter(r=>r.assemblyNames.includes(n));return o.find(r=>r.id===t)??(o.length===1?o[0]:void 0)}function Zt(e,t){let n=e.assemblyManager;return n?.has(t)?n.get(t)?.name??t:t}function Lc(e,t){let n=e.assemblyManager,o=n?.has(t.assemblyName)?n.get(t.assemblyName):void 0;return o?{...t,assemblyName:o.name,refName:o.getCanonicalRefName2?.(t.refName)??t.refName}:t}function Qt(e,t){let n=V(t,"assemblyNames");return Array.isArray(n)?n.filter(o=>typeof o=="string").map(o=>Zt(e,o)):[]}function lr(e,t,n){n.catch(o=>{console.error(`[GraphGenomeView] ${t}`,o),e.notifyError?.(`${t}: ${o}`,o)})}var Sa=1e3;function en(e,t=Sa){let n=Math.max(0,Math.ceil((t-(e.end-e.start))/2));return{...e,start:Math.max(0,e.start-n),end:e.end+n}}function mr(e,t){return t?e.map(n=>n.rank===0?{...n,sample:t.assemblyName,haplotype:void 0,refName:t.refName,start:t.start,end:t.end}:n):e}function Nc({session:e,location:t,assembly:n,connectedViewId:o,tracks:a=[]}){let r=Be({views:e.views,connectedViewId:o,assemblyName:n}),s;return r?(lr(e,`Could not show ${n} ${ne(t)}`,Promise.resolve(r.navToLocString(ht(t),n))),s=r.id):s=e.addView("LinearGenomeView",{displayName:`${n} \u2014 ${ne(t)}`,init:{assembly:n,loc:ht(t),tracks:a}}).id,s}function Pc({session:e,location:t,assembly:n,connectedViewId:o}){Be({views:e.views,connectedViewId:o,assemblyName:n})&&e.addHighlight?.({refName:t.refName,start:t.start,end:t.end,assemblyName:n})}function pr(e,t){let n=t===void 0?void 0:e.tracks.find(o=>V(o,"trackId")===t);return n?Qt(e,n):[]}function Ac({session:e,contributors:t,trackId:n,graphTrackId:o}){let a=pr(e,o),r=pr(e,n),s=t.filter(d=>r.includes(d.sample)),i=s.length>=2?s:t,c={init:{views:i.map(d=>({assembly:d.sample,loc:ht(d),...o!==void 0&&a.includes(d.sample)?{tracks:[o]}:{}})),tracks:n?i.slice(1).map(()=>[n]):[],collapseEmptyRows:!0}};lr(e,"Could not open the synteny view",e.launchView("LinearSyntenyView",c))}function Oe(e,t,n){let o=new Map;for(let r of e.nodes)if(le(r)){let{refName:s}=r.stable;if(n[r.id]?.length){let i=o.get(s)??o.set(s,{nodes:[],reach:0}).get(s);i.nodes.push(r),i.reach=Math.max(i.reach,r.length)}}for(let{nodes:r}of o.values())r.sort((s,i)=>s.stable.start-i.stable.start);let a=[];for(let r of t){let s=o.get(r.refName);if(!s)continue;let i=[],c=[],d=new Set,m,p=1/0,l=0,u=(r.start+r.end)/2,{nodes:h,reach:f}=s;for(let g=xt(h,r.start-f);g<h.length&&h[g].stable.start<r.end;g++){let w=h[g],x=w.stable.start,v=x+w.length;if(v<=r.start)continue;let y=n[w.id];d.add(w.id),l+=Math.min(v,r.end)-Math.max(x,r.start);let k=[],b=[];for(let S of r.exons){let M=Math.max(S.start,x),N=Math.min(S.end,v);if(N<=M)continue;let C=Tt(y,(M-x)/w.length,(N-x)/w.length);C.length===1&&C.push({...C[0]}),k.push(ye(C)),b.push(C)}k.length>0&&(i.push(...k),c.push({nodeId:w.id,d:k.join(""),stretches:b}));let L=Math.min(Math.max(u,x),v),R=Math.abs(L-u);if(R<p){p=R;let S=w.length?(L-x)/w.length:0;m=Tt(y,S,S)[0]}}m&&a.push({gene:r,exons:i.join(""),exonsByNode:c,nodeIds:d,at:m,covered:l/(r.end-r.start)})}return a}var ur="11.9.0";function _e(e,t,n={}){return{nodePositions:n.drawsRows?{}:e.nodePositions,deletions:t.bypassed,deletionRoutes:e.deletionRoutes,stranded:e.stranded,hiddenEdges:t.hidden}}var hr=(e,t)=>!!e.referencePath&&H(t).name===e.referencePath;function va(e,t){let n=H(t).name;return(e.paths??[]).filter(o=>H(o.name).name===n).sort((o,a)=>(o.start??0)-(a.start??0))}var fr=e=>new Map(e.nodes.map(t=>[t.id,t]));function Ma(e){let t=new Map;return e.edges.forEach((n,o)=>{t.set(`${n.from}>${n.to}`,o)}),{byId:fr(e),edgeAt:t}}function La(e,t,{byId:n,edgeAt:o}){let a=va(e,t),r=a[0];if(!r)return;let s=R=>n.get(R)?.length??0,i=R=>R.nodeIds.reduce((S,M)=>S+s(M),0),c=a.reduce((R,S)=>R+i(S),0),d=R=>{let S=Math.min(...R.map(M=>M.start??1/0));return Number.isFinite(S)?{start:S,end:Math.max(...R.map(M=>(M.start??0)+i(M)))}:void 0},m=d(a),p=m&&{contig:r.contig??Ve(H(t).name),...m},l=p?p.end-p.start:c,u=new Set,h=new Set,f=new Map,g=new Map,w=1,x=0;for(let R of a)p&&(x=Math.max(x,(R.start??0)-p.start)),R.nodeIds.forEach((S,M)=>{u.add(S);let N=(g.get(S)??0)+1;if(g.set(S,N),w=Math.max(w,N),M>0){let Xe=R.nodeIds[M-1],P=o.get(`${Xe}>${S}`)??o.get(`${S}>${Xe}`);P!==void 0&&h.add(P)}let C=s(S);f.has(S)||f.set(S,l>0?(x+C/2)/l:0),x+=C});let v=0,y=0,k;a.forEach((R,S)=>{if(k!==void 0&&R.start!==void 0&&R.start>k)for(let M of Rn(R.start-k,a[S-1].after,R.before))v+=M.cause==="missing"?M.bp:0,y+=M.cause==="unknown"?M.bp:0;k=R.start===void 0?void 0:R.start+i(R)});let b=hr(e,t),L=()=>{let R=b?[]:(e.paths??[]).filter(M=>hr(e,M.name));if(R.length===0)return;let S=d(R);return S?S.end-S.start:R.reduce((M,N)=>M+i(N),0)};return{name:t,reference:b,range:p,nodeIds:u,edgeIndexes:h,progress:f,passes:g,mostPasses:w,route:a.map(R=>R.nodeIds),steps:a.reduce((R,S)=>R+S.nodeIds.length,0),bp:c,referenceBp:L(),missingBp:v,unknownBp:y}}function gr(e,t,n,o){let a=new Map;for(let[r,s]of t.progress){let i=e.get(r),c=n.field==="progress"?s:o&&i?Hn(i,o):void 0;a.set(r,Un(n,c))}return a}function Na(e,t,n){let o=new Set,a=0,r=e.referencePath;if(!r||n.reference)return{reversed:o,bp:a};let s=e.pathVisits;if(!s)return{reversed:o,bp:a};let i=s.pathIndex(H(n.name).name),c=s.pathIndex(r);for(let d of n.progress.keys()){let m=t.get(d),p=m?s.slot(m.name):-1,l=p<0?-1:s.firstBy(p,i),u=p<0?-1:s.firstBy(p,c);l>=0&&u>=0&&s.reversed[l]!==s.reversed[u]&&(o.add(d),a+=m.length)}return{reversed:o,bp:a}}function $e(e,t,n){let o=Ma(e),a=new Set,r=t.filter(d=>!a.has(d.walk)&&a.add(d.walk)).flatMap(d=>{let m=La(e,d.walk,o);return m?[{walk:m,layer:d}]:[]}).sort((d,m)=>Number(m.walk.reference)-Number(d.walk.reference));if(r.length===0)return;let s=0,i=zn(r.map(({walk:d,layer:m})=>$t(m,d.reference,d.reference?0:s++,r.length===1))),c=r.map(({walk:d},m)=>{let p=i[m],{reversed:l,bp:u}=Na(e,o.byId,d);return{...d,encoding:p,colors:gr(o.byId,d,p,n),reversed:l,reversedBp:u}});return wr(c,n)}var Pa={field:"progress",scheme:"red"};function He(e,t,n,o){let a=fr(e);return t.walks.map(r=>{let s=n.find(c=>c.walk===r.name)?.color,i=$t({walk:r.name,color:{...Pa,...s}},r.reference,0);return wr([{...r,encoding:i,colors:gr(a,r,i,o)}],o)})}function wr(e,t){return{walks:e,referenceDomain:t?{start:t.start,end:t.start+t.span}:void 0,nodeIds:new Set(e.flatMap(n=>[...n.nodeIds])),edgeIndexes:new Set(e.flatMap(n=>[...n.edgeIndexes])),names:new Set(e.map(n=>n.name))}}var oe={..._t,width:1200,height:800,colorScheme:"auto",nodeWidth:"depth",contigThickness:6,connectorThickness:2};var br=[{value:"auto",label:"Auto"},{value:"uniform",label:"Uniform"},{value:"random",label:"Random"},{value:"rainbow",label:"Rainbow"},{value:"depth",label:"Depth"},{value:"node-length",label:"Node length"},{value:"stable-rank",label:"Stable rank"},{value:"reference-position",label:"Reference position"},{value:"grey",label:"Grey"}],Aa=br.map(e=>e.value);function We(e,t){return e!=="auto"?e:t?.anchoredBy?"reference-position":"uniform"}function yr(e,t,n){let o=n.region,a=n.colorDomain??o,r=n.walkRows,s=Te(t,{region:n.fitToDrawing?void 0:o,extent:r&&t.extent?he(r,n.walkRowPitch):void 0}),i=new Map(e.nodes.map(b=>[b.id,b])),c=We(n.colorScheme??oe.colorScheme,e),d=c==="reference-position"&&!t.tubeMap?Ne(e,a):void 0,m=Se(e,t.tubeMap?[]:Re(e),n.showDeletionEdges),p=n.walks??[],l=p.some(b=>b.color?.field==="reference")?d??Ne(e,a):void 0,u=p.length>0&&!t.tubeMap?$e(e,p,l):void 0,h=tt(n.facet),f=h.field&&u&&u.walks.length>1?He(e,u,p,l):void 0,g=h.field&&f?{panels:f,place:nt(f.map(b=>b.walks[0].name),h.field,h.domain)}:void 0,w=Ye(e.paths?.length?ve(e.paths):[]),x=n.referenceName??vt(e,o),v=n.contigThickness??oe.contigThickness,y=n.nodeWidth??oe.nodeWidth,k=u?.referenceDomain&&{...u.referenceDomain,name:x};return{bounds:s,nodeById:i,colorScheme:c,referenceRamp:d,drawnDeletions:m,layers:p,lift:u,facet:h,facets:g,labelOf:b=>w.get(b)??b,referenceName:x,keyText:b=>{let L=Po(b,k);return{note:L.delta+L.gaps+L.reversed,scale:L.scale}},contigThickness:v,nodeWidth:y,geometry:(b,L)=>Ke({..._e(t,m,{drawsRows:!!r}),graph:e,nodeById:i,colorScheme:c,contigThickness:v,connectorThickness:n.connectorThickness??oe.connectorThickness,drawPaths:!1,nodeWidth:y,linearLayout:n.linearLayout,highlight:b,axis:L,referenceRamp:d})}}var ft='font-family="Helvetica, Arial, sans-serif" font-size="11"',Ta=48,pe=18,xr=16,gt=16,Ga=32,Ea=22,Ia="rgb(160,160,160)",Rr="#1c1c22";function tn(e,t,n,o,a,r,s,i=1){let c=o.length>1?Ta:pe,d=o.length>1?`fill="url(#${e})"`:`fill="${o[0].color}"${i<1?` fill-opacity="${i}"`:""}`,m=o.length>1?`<linearGradient id="${e}">${o.map(l=>`<stop offset="${l.offset}" stop-color="${l.color}"/>`).join("")}</linearGradient>`:"";return{width:Math.max(c+5+(a.length+r.length)*se,(s?.length??0)*se),height:s?Ga:gt,markup:`${m}<g transform="translate(${t} ${n})" ${ft}><rect y="5" width="${c}" height="8" rx="2" ${d}/><text x="${c+5}" y="13"><tspan font-weight="bold">${Q(a)}</tspan>${Q(r)}</text>${s?`<text y="28">${Q(s)}</text>`:""}</g>`}}function Ca(e,t){return{width:pe+5+4*se,height:gt,markup:`<g transform="translate(${e} ${t})" ${ft}><rect x="1" y="4" width="${pe-2}" height="10" rx="4" fill="none" stroke="${Dt}" stroke-width="2"/><text x="${pe+5}" y="13">exon</text></g>`}}function Ba(e,t,n){let o=[6,9,12].map(a=>`<line y1="${a}" y2="${a}" x2="${pe}" stroke="#444" stroke-width="${Cn}"/>`).join("");return{width:pe+5+n.length*se,height:gt,markup:`<g transform="translate(${e} ${t})" ${ft}>${o}<text x="${pe+5}" y="13">${n}</text></g>`}}function Oa(e,t){let n=[],o=6,a=2,r=0;for(let s of e){let i=s(0,0);o>6&&o+i.width>t-6&&(o=6,a+=r+4,r=0),n.push(s(o,a).markup),o+=i.width+xr,r=Math.max(r,i.height)}return{markup:n,height:a+r}}function kr(e,t,n,o,a,r){return tn(e,t,n,Ht(o.encoding),a,r.note,r.scale)}function _a(e,t){return e.replaceAll(/([ML])(-?[\d.e-]+),(-?[\d.e-]+)/g,(n,o,a,r)=>`${o}${+(Number(a)*t.scaleX+t.translateX).toFixed(1)},${+(Number(r)*t.scaleY+t.translateY).toFixed(1)}`)}function $a(e,t,n,o,a){return`<rect x="${e-n/2}" y="${t-xe-At+2}" width="${n}" height="${xe+At*2-2}" rx="3" fill="#fff" fill-opacity="0.85" stroke="${Dt}"/><text x="${e}" y="${t}" font-family="Helvetica, Arial, sans-serif" font-size="${xe}" fill="${Rr}" text-anchor="middle"><tspan font-style="italic" font-weight="600">${Q(o)}</tspan>${a?Q(a):""}</text>`}function nn(e,t,n={}){let o=n.width??oe.width,a=n.height??oe.height,r=n.walkRows,{bounds:s,nodeById:i,referenceRamp:c,layers:d,lift:m,facet:p,facets:l,labelOf:u,referenceName:h,keyText:f,contigThickness:g,nodeWidth:w,geometry:x}=yr(e,t,n),v=t.pixelRows??!1,y=c&&{start:c.start,end:c.start+c.span},k=n.genes?.length&&!t.tubeMap&&!r?Oe(e,n.genes,t.nodePositions):[],b=ze(e,i,g,w),L=0;function R(P,T,A,O){let _=[],X=So(Ro(k,b.halfWidthPx,P,$=>_a($,T)),{id:`exons${L++}`,width:A,height:O});X&&_.push(ie(X));let G=$=>({x:$.x*T.scaleX+T.translateX,y:$.y*T.scaleY+T.translateY}),E={width:A,height:O};for(let{item:$,x:re,y:J,w:Yr,text:zr}of Pn(Mo(k,G,g,vo(t.nodePositions,T)),E,Nn(E))){let Ur=G($.at).y+g/2;_.push(`<line x1="${re}" x2="${re}" y1="${J-xe-2}" y2="${Ur}" stroke="${Rr}" stroke-width="0.8" stroke-opacity="0.6"/>`,$a(re,J,Yr,$.gene.name,zr.slice($.gene.name.length)))}r&&_.push(ie(Ot(r,{...T,width:A,height:O,...n.walkRowPitch},{ramp:y,rowGenes:n.rowGenes})));let F=fe(r,t,n.walkRowPitch);for(let{label:$,y:re}of F){let J=re*T.scaleY+T.translateY;J>=0&&J<=O&&_.push(`<text x="6" y="${J+4}" ${ft} stroke="#fff" stroke-width="3" paint-order="stroke">${Q($)}</text>`)}return _.join("")}function S(P,T,A){let O=Ae(s,T,A,v,l?{padLeft:K,padTop:K,padRight:K,padBottom:K}:{});if(!O)return"";let _=ot(O.scale,v),{canvas:X,markup:G}=xo(T,A),E=new ko(X);E.uploadGeometry(x(P,_));let F={scaleX:_.scaleX,scaleY:_.scaleY,translateX:O.translateX,translateY:O.translateY};return E.updateTransform({...F,dpr:1}),E.render([1,1,1,1]),G()+R(P,F,T,A)}let M=[],N;if(l){let{panels:P,place:T}=l,A=et({count:T.count,bounds:s,pixelRows:v,width:o,room:a,columns:T.columns??p.columns});P.forEach((O,_)=>{let X=T.cells[_],G=X%A.columns*(A.width+Pe),E=Math.floor(X/A.columns)*(A.height+Qe+Pe),F=O.walks[0];M.push(kr(`key${_}`,G+6,E+2,F,u(F.name),f(F)).markup,`<svg x="${G}" y="${E+Qe}" width="${A.width}" height="${A.height}">${S(O,A.width,A.height)}</svg>`)}),N=A.total}else{let P=[];m&&(m.walks.forEach((G,E)=>{P.push((F,$)=>kr(`key${E}`,F,$,G,u(G.name),f(G)))}),P.push((G,E)=>tn("faded",G,E,[{offset:0,color:Ia}],"",`not on ${m.walks.length===1?u(m.walks[0].name):"these walks"}`,void 0,.3)),Bn(m.walks)&&P.push((G,E)=>Ba(G,E,On(m.walks)))),r?Ct(r,{ramp:y,genes:n.rowGenes?.size?n.rowGeneGaps:void 0}).forEach((E,F)=>{P.push(($,re)=>{let J=Bt([E],$,re,`rows-key-${F}`);return{width:J.width-xr,height:gt,markup:ie(J.tree)}})}):!m&&c&&P.push((G,E)=>tn("ramp",G,E,Ht({field:"reference",scheme:"rainbow"}),h?`${h} position`:"Reference position","",No(h,c.start,c.start+c.span))),k.some(G=>G.exonsByNode.length>0)&&P.push((G,E)=>Ca(G,E));let T=Oa(P,o);M.push(...T.markup);let A=P.length>0?Math.max(Qe,T.height):0,O=o-2*B,_=v||!(s.w>0)?s.h:s.h*O/s.w,X=Math.max(160,Math.min(a-A,Math.ceil(_+2*B)));M.push(`<svg y="${A}" width="${o}" height="${X}">${S(m,o,X)}</svg>`),N=A+X}let C=n.walkStrip;if(C&&!r&&!t.tubeMap){let P=Ie(C.rows,{width:o}),T=Bt(Ct(C.rows,{ramp:y,genes:qt(P,C.rowGenes,C.rowGeneGaps)}),6,N+P.height,"strip-key");M.push(`<line x1="0" x2="${o}" y1="${N+.5}" y2="${N+.5}" stroke="#ddd"/>`,`<svg y="${N}" width="${o}" height="${P.height}">${ie(Ot(C.rows,P,{ramp:y,rowGenes:C.rowGenes,idPrefix:"strip"}))}${ie(Jt(C.rows,P,new Set(d.map(A=>A.walk))))}</svg>`,ie(T.tree)),N+=P.height+Ea}let Xe=JSON.stringify({generator:`@jbrowse/bandage-core@${ur}`,...n.spec===void 0?{}:{spec:n.spec}});return`<svg xmlns="http://www.w3.org/2000/svg" width="${o}" height="${N}" viewBox="0 0 ${o} ${N}"><metadata>${Q(Xe)}</metadata><rect width="${o}" height="${N}" fill="#fff"/>${M.join("")}</svg>
+`}var Ha=.9;function Fe(e,t){return e+2>=t||e>=Ha*t}var Wa=50;function on(e,t,n,o=[]){let a=new Map(e.nodes.map(s=>[s.name,s])),r=[];for(let s of t){let i=[],c=1/0,d=-1/0,m=1/0,p=[],l=ce(s);for(let[f,g]of l.entries()){let w=a.get(g),x=w&&n[w.id];if(!(!w||!x?.length)&&!(s.key?f===0||f===l.length-1:I(w)&&(w.stable.start<s.start||w.stable.start>=s.end))){p.push(w.id),i.push(ye(x.length===1?[x[0],x[0]]:x));for(let v of x)c=Math.min(c,v.x),d=Math.max(d,v.x),m=Math.min(m,v.y)}}if(p.length===0)continue;let u={x:(c+d)/2,y:m},h=s.covering===!0||Fe(p.length,e.nodes.length);r.push({bubble:s,...so(s,o),path:i.join(""),labelAt:u,members:p.length,nodeIds:p,whole:h,tick:!h&&!s.partial&&s.longestAlleleLength<Wa})}return r}function De(e,t){let n=new Set(t),o=e.nodes.filter(c=>n.has(c.name)),a=new Set(o.map(c=>c.id)),r=new Map(e.nodes.map(c=>[c.id,c.length])),s=new Map,i=e.paths?.flatMap(c=>{let d=c.nodeIds.findIndex(l=>a.has(l));if(d<0)return[];let m=c.nodeIds.filter(l=>a.has(l));s.set(c.name,{first:d,nodeIds:m});let p=c.nodeIds.slice(0,d).reduce((l,u)=>l+(r.get(u)??0),0);return[{...c,nodeIds:m,...c.start===void 0?{}:{start:c.start+p}}]});return{name:e.name,nodes:o,edges:e.edges.filter(c=>a.has(c.from)&&a.has(c.to)),...i?.length?{paths:i}:{},anchorPaths:vn(e,s),pathVisits:e.pathVisits,anchoredBy:e.anchoredBy,referencePath:e.referencePath}}function rn(e,t,n,o){let a=e.get(t);e.set(t,{min:Math.min(a?.min??1/0,n.min+o),max:Math.max(a?.max??-1/0,n.max+o),n:Math.min(ao,n.n+(a?.n??0))})}function Sr(e){if(!e.nodes.some(I))return[];let t=new Map(e.nodes.map(l=>[l.id,l])),n=Vt(e),o=new Map(n.map((l,u)=>[l,u])),a=new Int32Array(n.length+1),r=new Map,s=new Set;for(let l of e.edges){let u=o.get(l.from),h=o.get(l.to);if(u===void 0||h===void 0||u===h)continue;s.add(`${l.from}>${l.to}`).add(`${l.to}>${l.from}`);let[f,g]=u<h?[u,h]:[h,u];a[f+1]++,a[g]--;let[w,x]=u<h?[l.from,l.to]:[l.to,l.from];yn(r,w,x)}for(let l=1;l<a.length;l++)a[l]+=a[l-1];let i=e.nodes.filter(I).sort((l,u)=>l.stable.start-u.stable.start),c=new Set([i[0].id,i.at(-1).id]),d=i.map(l=>[l,o.get(l.id)]).filter(([l,u])=>c.has(l.id)||a[u]===0).sort(([l,u],[h,f])=>u-f||l.stable.start-h.stable.start),m=an(e,d.map(([l])=>l.id)),p=[];for(let l=0;l+1<d.length;l++){let[u,h]=d[l],[f,g]=d[l+1],w=n.slice(h+1,g);if(w.length===0)continue;let x=new Map([[u.id,{min:0,max:0,n:1}]]);for(let S of[u.id,...w]){let M=x.get(S);if(M)for(let N of r.get(S)??[])o.get(N)>g||rn(x,N,M,N===f.id?0:t.get(N).length)}let v=sn(e,t,m,u.id,f.id,()=>x.get(f.id)??{min:0,max:0,n:0}),y=u.stable.start+u.length,k=f.stable.start,b=[u.id,...w.filter(S=>I(t.get(S))),f.id],L=b.some((S,M)=>M>0&&!s.has(`${b[M-1]}>${S}`)),R=k-y;p.push(cn({refName:u.stable.refName,start:y,end:k},[u,...w.map(S=>t.get(S)),f],L&&!v.routes?{...v,min:R,max:R}:v,L||v.walksLeave))}return p}function an(e,t){let n=e.paths;if(!n)return;let o=new Map;for(let a of t)o.set(a,new Int32Array(n.length).fill(-1));return n.forEach((a,r)=>{let s=a.nodeIds;for(let i=0;i<s.length;i++){let c=o.get(s[i]);c?.[r]===-1&&(c[r]=i)}}),o}function sn(e,t,n,o,a,r){if(!n)return{...r(),walksLeave:!1};let s=[],i=1/0,c=-1/0,d=0,m=n.get(o),p=n.get(a);e.paths.forEach((u,h)=>{let f=m[h],g=p[h];if(f<0||g<0){(f>=0||g>=0)&&d++;return}let w=u.nodeIds,x=Math.min(f,g)+1,v=Math.max(f,g),y=g<f?b=>w[v-1-b]:b=>w[x+b],k=s.find(b=>b.steps.length===v-x&&b.steps.every((L,R)=>L===y(R)));if(!k){let b=Array.from({length:v-x},(R,S)=>y(S)),L=0;for(let R of b)L+=t.get(R)?.length??0;k={steps:b,bp:L,walks:[]},s.push(k)}k.walks.push(u.name),i=Math.min(i,k.bp),c=Math.max(c,k.bp)});let l=d>0;return s.length?{min:i,max:c,n:s.length,routes:s,walksLeave:l}:{...r(),walksLeave:l}}function cn(e,t,{min:n,max:o,n:a,routes:r},s){return{...e,segmentCount:t.length,pathCount:a,inversion:!1,shortestAlleleLength:n,longestAlleleLength:o,segments:t.map(i=>i.name).join(","),shortestAllele:void 0,longestAllele:void 0,partial:s,routes:r}}function Fa(e,t){let n=e.nodes.length*2,o=new Set,a=[],r=new Int32Array(n);for(let d of e.edges){let m=t.get(d.from),p=t.get(d.to);if(m===void 0||p===void 0)continue;let l=ke(d),u=m*2+(l.from==="end"?1:0),h=p*2+(l.to==="end"?1:0),f=Math.min(u,h)*n+Math.max(u,h);o.has(f)||(o.add(f),a.push(u,h),r[u]++,u!==h&&r[h]++)}let s=new Int32Array(n+1);for(let d=0;d<n;d++)s[d+1]=s[d]+r[d];let i=new Int32Array(s[n]),c=s.slice(0,n);for(let d=0;d<a.length;d+=2){let m=a[d],p=a[d+1];i[c[m]++]=p,m!==p&&(i[c[p]++]=m)}return{offset:s,next:i}}function Da(e,t,n){let o=new Int32Array(e),a=new Uint8Array(e*2),r=new Int32Array(e*2),s=new Int32Array(e),i=[],c=0;return d=>{let m=d>>1;c++,i.length=0;let p=0,l=0,u=0,h,f=g=>{a[g]||(a[g]=1,p++,i.push(g))};f(d),r[l++]=d;e:for(;l>0;){let g=r[--l],w=g>>1;if(o[w]=c,w!==m&&(s[u++]=g),a[g]&&(a[g]=0,p--),t[g]===t[g+1])break;for(let x=t[g];x<t[g+1];x++){let v=n[x],y=v>>1;if(y===m)break e;if(f(v^1),o[y]===c)continue;let k=!0;for(let b=t[v];b<t[v+1];b++)if(o[n[b]>>1]!==c){k=!1;break}k&&(r[l++]=v^1)}if(l===1&&p===1){u>0&&(h={source:d,sink:r[0],inside:s.slice(0,u)});break}}for(let g of i)a[g]=0;return h}}function Xa(e){return{source:e.sink^1,sink:e.source^1,inside:e.inside.map(t=>t^1).reverse()}}var Lr=new Intl.Collator(void 0,{numeric:!0});function dn(e,t){return I(e)&&I(t)&&e.stable.refName===t.stable.refName}function vr(e,t){let n=t[e.source>>1],o=t[e.sink>>1],a=dn(n,o)?n.stable.start-o.stable.start:0,r=((e.sink^1)&1)-(e.source&1);return(a||r||Lr.compare(n.name,o.name))<0}function Mr(e){return[e.source>>1,...Array.from(e.inside,t=>t>>1),e.sink>>1]}function Va(e){let{nodes:t}=e,n=new Map(t.map((c,d)=>[c.id,d])),{offset:o,next:a}=Fa(e,n),r=Da(t.length,o,a),s=new Map;for(let c=0;c<t.length*2;c++){let d=r(c);if(!d)continue;let m=d.source>>1,p=d.sink>>1,l=Math.min(m,p)*t.length+Math.max(m,p);(vr(d,t)||!s.has(l))&&s.set(l,d)}return{found:[...s.values()].map(c=>vr(c,t)?c:Xa(c)),offset:o,next:a}}function ja(e,t,n,o){let a=o.sink>>1,r=new Map([[o.source>>1,{min:0,max:0,n:1}]]);for(let s of[o.source,...o.inside]){let i=r.get(s>>1);if(i)for(let c=t[s];c<t[s+1];c++){let d=n[c]>>1;rn(r,d,i,d===a?0:e[d].length)}}return r.get(a)??{min:0,max:0,n:0}}function pn(e,t){let{nodes:n}=e,{found:o,offset:a,next:r}=Va(e),s=o.map(h=>Fe(h.inside.length,n.length)),i=o.map(Mr),c=new Map;i.forEach((h,f)=>{for(let g of h)bn(c,g,f)});let d=(h,f)=>c.get(h.inside[0]>>1).some(g=>g!==f&&!s[g]&&i[g].length>i[f].length&&i[f].every(w=>c.get(w).includes(g))),m=h=>t!==void 0||dn(n[h.source>>1],n[h.sink>>1]),p=o.filter((h,f)=>!s[f]&&m(h)&&!d(h,f)),l=new Map(n.map(h=>[h.id,h])),u=an(e,p.flatMap(h=>[n[h.source>>1].id,n[h.sink>>1].id]));return p.map(h=>{let f=n[h.source>>1],g=n[h.sink>>1],w=sn(e,l,u,f.id,g.id,()=>ja(n,a,r,h)),x=dn(f,g);return{...cn({refName:x?f.stable.refName:t.refName,start:x?f.stable.start+f.length:t.start,end:x?g.stable.start:t.end},Mr(h).map(v=>n[v]),w,w.walksLeave),key:`${f.name}>${g.name}`,...x?{}:{offReference:!0}}}).sort((h,f)=>h.start-f.start||h.end-f.end||Lr.compare(h.key,f.key))}function wt(e,t){let n=e.nodes.length,o=Sr(e);if(o.length===0){let a=pn(e,t);return t?[...a,{...t,covering:!0}]:a}return o.flatMap(a=>Fe(a.segmentCount-2,n)?[...pn(a.segmentCount===n?e:De(e,ce(a)),a),{...a,covering:!0}]:[a])}function ln(e,t,n){if(t==="uniform"||t==="grey")return;let o=Wn(e,n);return new Map(e.nodes.map((a,r)=>[a.id,_n(Fn(a,r,t,o))]))}var bt=JBrowseExports["@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"];var Nr=bt&&bt.__esModule?bt.default:bt;var mn={paths:!1,bubbles:!1,deletions:!0,genes:!0,referenceStrip:!0,walkStrip:!1};function Pr(e){let t=z(e)?e:{};return new Set(Object.keys(mn).filter(n=>t[n]??mn[n]))}function Dh(e,t,n){let{[t]:o,...a}=z(e)?e:{};return n===mn[t]?a:{...a,[t]:n}}var un={depth:"depth",length:"node-length",rank:"stable-rank",position:"reference-position"},Ar=Object.fromEntries(Object.entries(un).map(([e,t])=>[t,e]));function Tr(e){if(e==="grey"||e==="uniform")return e;if(z(e)){let{field:t,scheme:n}=e;if(t==="id")return n==="rainbow"?"rainbow":"random";if(typeof t=="string"&&t in un)return un[t]}return"auto"}function Gr(e){return z(e)&&typeof e.domainMin=="number"&&typeof e.domainMax=="number"?{start:e.domainMin,end:e.domainMax}:void 0}function jh(e,t){return e==="grey"||e==="uniform"?e:e==="random"?{field:"id",scale:"categorical"}:e==="rainbow"?{field:"id",scheme:"rainbow"}:e==="reference-position"&&t?{field:"position",domainMin:t.start,domainMax:t.end}:Ar[e]?{field:Ar[e]}:{}}var Er=6;function hn(e){return typeof e=="number"?{width:"uniform",px:e}:z(e)?{width:e.field==="depth"?"depth":"uniform",px:typeof e.value=="number"?e.value:Er}:{width:"depth",px:Er}}function Uh(e,t){return e==="depth"?{field:"depth",value:t}:t}function Ya(e,t,n){let o=Mn(e,t);return o?Nt(o,n):void 0}function Ir(e){try{return e()}catch{return}}function Cr(e){let t=new Map;for(let n of e.nodes)t.set(n.id,n);return t}function Br(e,t,n){return t&&n?It({nodeId:e,nodeById:t,neighbors:n}):void 0}var Or=ro.views(e=>({sessionTrack(t){return U(e).tracks.find(n=>n.trackId===t)},get grammar(){return{}},get hasPendingSource(){return!1},get canRetryLoad(){return!1},get sourceTrack(){return Ir(()=>gn(e).configuration)},get containingView(){return Ir(()=>yt(e))}})).views(e=>{let t=r=>Ln(r,{equals:(s,i)=>JSON.stringify(s)===JSON.stringify(i)}),n=t(()=>Gr(e.grammar.color)),o=t(()=>tt(e.grammar.facet)),a=t(()=>{let r=uo(e.grammar.facet);return r&&r.field!=="walk"&&r.field!=="sample"?r:void 0});return{get chosenLayoutMode(){return e.grammar.layoutMode??"force"},get chosenColorScheme(){return Tr(e.grammar.color)},get statedColorDomain(){return n.get()},get chosenHover(){return e.grammar.hover??"nodes"},get nodeWidth(){return hn(e.grammar.size).width},get contigThickness(){return hn(e.grammar.size).px},get layerSet(){return Pr(e.grammar.layers)},get drawPaths(){return this.layerSet.has("paths")},get showBubbles(){return this.layerSet.has("bubbles")},get showDeletionEdges(){return this.layerSet.has("deletions")},get showGenes(){return this.layerSet.has("genes")},get showReferenceStrip(){return this.layerSet.has("referenceStrip")},get walkStrip(){return this.layerSet.has("walkStrip")},get facetSetting(){return o.get()},get walkRowGroupBy(){return a.get()},get walkRowSamples(){let r=e.grammar.rows?.kept;return Array.isArray(r)?r:void 0},get hoverLightsEverything(){return this.chosenHover==="everything"},get litNode(){return this.chosenHover==="off"?null:e.hoveredNode}}}).views(e=>({get paneWidth(){return yt(e).width},get paneMeasured(){return!0},get drawnGraph(){return e.layoutResult?.tubeMap?.graph??e.graph}})).views(e=>({get nodeById(){return e.drawnGraph&&Cr(e.drawnGraph)},get nodeLengths(){let t=new Map;for(let n of e.drawnGraph?.nodes??[])t.set(n.id,n.length);return t},get nodeCount(){return e.graph?.nodes.length??0},get edgeCount(){return e.graph?.edges.length??0},get pathCount(){return e.graph?.paths?.length??0},get legendAtRest(){return e.hoveredNode===null&&e.hoveredRowWalks.length===0},get hasGraph(){return e.graph!==void 0},get geometryPainted(){return no(e)},get showLoading(){return e.error===void 0&&(e.isLoading||e.hasPendingSource||e.graph!==void 0&&!this.geometryPainted)},get canCancelLoad(){return e.isLoading&&!e.layoutResult},get usesLayoutEngine(){return e.graph?Yt(e.chosenLayoutMode,e.graph):!1},get anchorPaths(){return e.graph?.anchorPaths??[]},get walkChoices(){let t=e.graph?.paths;return t?.length?ve(t):[]},get effectiveDrawPaths(){return e.drawPaths&&je(e.graph?.paths?.length??0)},get activeReferencePath(){return e.graph?.referencePath},get rampDomain(){let t=e.openBubbles.at(-1);return t&&!t.offReference&&t.end>t.start?{start:t.start,end:t.end}:e.statedColorDomain??e.graphRegion},get drawnReferenceRamp(){let t=e.drawnGraph;return t?Ne(t,this.rampDomain):void 0},get walkRamp(){return e.walkLayers.some(t=>t.color?.field==="reference")?this.drawnReferenceRamp:void 0},get modeDrawsNodes(){return Y(e.chosenLayoutMode).drawsNodes},get liftedWalkLayers(){return e.walkLayers.length>0||!this.modeDrawsNodes?e.walkLayers:e.hoveredRowWalks.map(t=>({walk:t}))},get walkLift(){let{graph:t}=e,n=this.liftedWalkLayers;return t&&!e.walkCut&&n.length>0&&!e.layoutResult?.tubeMap?$e(t,n,this.walkRamp):void 0},get facetPanels(){let{graph:t}=e,n=this.walkLift;return e.facetSetting.field!==""&&this.modeDrawsNodes&&t&&n&&e.walkLayers.length>1&&n.walks.length>1?He(t,n,e.walkLayers,this.walkRamp):void 0},get drawnWalks(){return this.facetPanels?.map(t=>t.walks[0])??this.walkLift?.walks??[]},get liftsWalks(){return!Qn.has(e.chosenLayoutMode)},get walkReference(){let t=this.walkLift?.referenceDomain;return t&&{...t,name:e.graphRegion?.refName}},get walkLabels(){return Ye(this.walkChoices)},walkLabel(t){return this.walkLabels.get(t)??t},get liftPaintsOffReference(){return!!this.walkLift?.walks.some(t=>t.encoding.field!=="walk"&&[...t.colors.values()].includes(Kn))},get liftedWalksLabel(){let t=this.walkLift?.walks??[];return t.length===1?this.walkLabel(t[0].name):"these walks"},get effectiveColorScheme(){return e.layoutResult?.tubeMap&&(this.tubeMapReads||e.chosenColorScheme==="auto")?"uniform":We(e.chosenColorScheme,e.graph)},get tubeMapReads(){let t=e.layoutResult;return!t?.tubeMapPanels&&(t?.tubeMap?.layout.reads.length??0)>0},get colorSchemeLock(){return this.walkLift?{value:"By walk",why:"Each highlighted haplotype colours its own lane: set it under Haplotypes, Color highlighted..."}:this.tubeMapReads?{value:"By strand",why:"Reads take the reds and blues, so the tube map leaves its nodes clear"}:void 0},get nodePositions(){return e.layoutResult?.nodePositions},get labelsNodeSizes(){return!e.layoutResult?.tubeMap&&!this.walkLift},get alleleDeletions(){return e.layoutResult?.alleleDeletions??[]},get deletionRoutes(){return e.layoutResult?.deletionRoutes},get stranded(){return e.layoutResult?.stranded},get pixelRows(){return e.layoutResult?.pixelRows??!1},get zoomPercent(){return`${(e.scale*100).toFixed(1)}%`},get isDefaultViewport(){return e.scale===1&&e.translateX===0&&e.translateY===0}})).views(e=>({get derivedBubbles(){return e.graph?wt(e.graph):[]},get openBubbleInsides(){let{graph:t}=e;return t?e.openBubbles.map(n=>wt(De(t,ce(n)),n).filter(o=>!o.covering)):[]},get openBubble(){return e.openBubbles.at(-1)},get openBubbleFocus(){let t=this.openBubble,{graph:n}=e;if(!t||!n)return;let o=new Set(ce(t)),a=new Set(n.nodes.filter(s=>o.has(s.name)).map(s=>s.id)),r=new Set;return n.edges.forEach((s,i)=>{a.has(s.from)&&a.has(s.to)&&r.add(i)}),{walks:[],nodeIds:a,edgeIndexes:r,names:new Set}},get drawnHighlight(){return e.walkLift??this.openBubbleFocus},bubbleIsOpen(t){return e.openBubbles.some(n=>at(n,t))},bubbleFaded({bubble:t,nodeIds:n}){let o=e.walkLift,a=this.openBubbleFocus;return o?!n.some(r=>o.nodeIds.has(r)):!!a&&!this.bubbleIsOpen(t)&&!n.every(r=>a.nodeIds.has(r))}})).views(e=>({get bubbles(){let t=e.indexBubbles?.length?e.indexBubbles:e.derivedBubbles,n=new Set(t.map(st));return[...t,...e.openBubbleInsides.flat().filter(o=>!n.has(st(o))&&n.add(st(o)))]},get foldNote(){let t=e.foldedBelowBp;return t===void 0?void 0:`variants under ${Tn(t)} folded into the reference`}})).views(e=>({get cutHaplotypes(){},get sourceAdapter(){let t=e.sourceTrack;return t?Yo(e,t):void 0},get sourceTrackId(){let t=e.sourceTrack;return t?V(t,"trackId"):void 0},get sessionTracks(){let t=U(e);return t.tracks.map(n=>({trackId:n.trackId,name:V(n,"name"),adapterType:V(n,"adapter").type,assemblies:Qt(t,n)}))}})).views(e=>({get assemblyTrackChoices(){let t=e.graphRegion,n=t&&Zt(U(e),t.assemblyName);return n?e.sessionTracks.filter(o=>o.assemblies.includes(n)):[]}})).views(e=>({get geneTrackChoices(){return e.assemblyTrackChoices.filter(t=>ct.has(t.adapterType))},get repeatTrackChoices(){return e.assemblyTrackChoices.filter(t=>_o.has(t.adapterType))},get repeatChoices(){return e.repeatArrays??[]}})).views(e=>({get repeatTrack(){return $o(e.repeatTrackChoices,e.repeatTrackId)},get geneTrack(){return dt(e.geneTrackChoices,e.geneTrackId)},get repeatOptions(){return[{value:"",label:"Whole window"},...e.repeatChoices.map(({key:t,name:n,unit:o})=>({value:t,label:`${n} \xB7 ${o.toLocaleString()} bp unit`}))]},get selectedRepeat(){return e.repeatChoices.find(t=>t.key===e.repeatKey)},get backbone(){return e.graph?St(e.graph):void 0},get cutWalkRows(){let t=e.walkCut?.walkRowRuns;return t?Nt(t):e.graph?ue(e.graph,e.graphRegion):void 0},assemblySpellings(t){let{assemblyManager:n}=U(e),o=n.has(t)?n.get(t):void 0,a=e.sourceAdapter?.assemblyNameToPanSN??{},r=[t,...o?[o.name,...o.aliases]:[]];return{name:t,aliases:[...r,...r.flatMap(s=>a[s]??[])]}},get drawsLoadedReference(){let t=e.graph;return t?.anchoredBy==="tags"||t?.referencePath!==void 0&&t.referencePath===e.loadedReferencePath}})).views(e=>({get geneAssembly(){let t=e.graphRegion;return t?e.assemblySpellings(t.assemblyName):void 0},get geneLaneFilter(){let t=e.containingView;if(!t)return;let n=Ho(t,e.geneTrack?.trackId);return n.length?new Nr({filters:n,jexl:wn(e).pluginManager.jexl}):void 0},get geneFeatures(){let t=e.geneTrackFeatures,n=this.geneLaneFilter;return t?Wo(n?t.filter(o=>n.passes(o)):t):void 0},get backboneGenes(){let{backbone:t}=e,{geneAssembly:n,geneFeatures:o}=this,a=e.drawsLoadedReference||n!==void 0&&Mt(t,[n])!==void 0;return t&&o&&a?Lt(o,t):void 0}})).views(e=>({get nodeNeighbors(){return e.drawnGraph?Z(e.drawnGraph):void 0},get nodeInk(){return ze(e.drawnGraph,e.nodeById,e.contigThickness,e.nodeWidth)},get allDeletions(){return e.graph&&this.drawsNodes?Re(e.graph):[]},get cohortWalkRows(){if(e.chosenLayoutMode!=="walkrows"||!e.graph)return;let t=e.selectedRepeat,n=e.walkCut,o=t?n?Ya(n,t,t.unit):ue(e.graph,t,t.unit):e.cutWalkRows;if(!o)return;let[a,...r]=Fo([o.reference,...o.rows],t?.calls);return{...o,reference:a,rows:r}},get walkRowSampleChoices(){let t=this.cohortWalkRows?.rows??[];return{samples:[...new Set(t.map(n=>n.sample))].sort(),disagreeing:[...new Set(t.filter(n=>n.call?.agrees===!1).map(n=>n.sample))]}},get walkRowSamplesTsv(){let t=e.sourceAdapter?.samplesTsvLocation;return t&&Sn(t)?t:void 0},get walkRowGroupFields(){return mo(e.walkRowSampleTable)},get tubeMapColoring(){let t=e.tubeMapColorBy,n=e.walkRowSampleTable;if(!t||!n||!this.walkRowGroupFields.includes(t))return;let o=yo(t,n),a=(e.graph?.paths??[]).map(r=>H(r.name).name).filter(r=>r!==e.graph?.referencePath);return{field:t,valueOf:o,palette:wo(a.map(o)),unvalued:a.some(r=>o(r)==="")}},get tableGroupBy(){let t=e.walkRowGroupBy,n=e.walkRowSampleTable;return t&&n&&this.walkRowGroupFields.includes(t.field)?{groupBy:t,table:n}:void 0},get tubeMapPanelSplit(){let{field:t,domain:n}=e.facetSetting,o=this.tableGroupBy;return t!==""?{by:t,domain:n}:o?{by:"column",...o.groupBy,table:o.table}:void 0},get keptCohortRows(){let t=this.cohortWalkRows;return t&&Me(t.rows,e.walkRowSamples)},get walkRowGroups(){let t=this.keptCohortRows,n=this.tableGroupBy;return t&&n?ho(t,n.table,n.groupBy):void 0},get walkRowBars(){let t=this.cohortWalkRows,n=this.keptCohortRows;return t&&n?{...t,rows:this.walkRowGroups?.rows??n}:void 0},get drawsNodes(){return Y(e.drawnLayoutMode??e.chosenLayoutMode).drawsNodes},get genePins(){Ge(e.positionsVersion);let t=e.layoutResult?.nodePositions;return e.showGenes&&this.drawsNodes&&e.graph&&e.backboneGenes&&t?Oe(e.graph,e.backboneGenes,t):[]},get bubbleHalos(){Ge(e.positionsVersion);let t=e.layoutResult?.nodePositions;return!e.showBubbles||!this.drawsNodes||!e.graph||!t?[]:on(e.graph,e.bubbles,t,e.repeatArrays)},get referenceRamp(){return e.effectiveColorScheme==="reference-position"?e.drawnReferenceRamp:void 0},get assemblyNames(){let t=e.graphRegion;return t?[t.assemblyName]:[]},get axisScale(){return ot(e.scale,e.pixelRows)},get scaleX(){return this.axisScale.scaleX},get scaleY(){return this.axisScale.scaleY}})).views(e=>({get screenTransform(){return{scaleX:e.scaleX,scaleY:e.scaleY,translateX:e.translateX,translateY:e.translateY}},toScreen(t){return{x:t.x*e.scaleX+e.translateX,y:t.y*e.scaleY+e.translateY}},get deletionDrawing(){return e.graph?Se(e.graph,e.allDeletions,e.showDeletionEdges):void 0},get deletions(){return this.deletionDrawing?.shown??[]},get deletionEdgeIndexes(){return this.deletionDrawing?.bypassed},get hiddenEdgeIndexes(){return this.deletionDrawing?.hidden},get referenceRampDomain(){let t=e.referenceRamp;return t?{start:t.start,end:t.start+t.span}:void 0},get paintsNodeColors(){return e.drawsNodes||!!e.layoutResult?.tubeMap},get referenceRampDrawsOffReference(){return!!e.referenceRamp&&this.paintsNodeColors&&!!e.drawnGraph?.nodes.some(t=>!I(t))},get tubeMapNodeColors(){let t=e.drawnGraph;return e.layoutResult?.tubeMap&&t?ln(t,e.effectiveColorScheme,e.referenceRamp):void 0},get tubeColorKind(){let t=e.layoutResult,n=e.drawnGraph?.paths??[],o=e.tubeMapReads;return t?.tubeMap?e.tubeMapColoring&&!o?"value":t.tubeMapPanels?"role":this.tubeMapNodeColors?"tinted":!o&&(!je(n.length)||n.some(a=>a.members))?"role":"path":void 0},tubeColorsOf(t,n){let o=t.paths??[],a=this.tubeColorKind,r=e.tubeMapColoring;return a==="value"&&r?bo(o,t.referencePath,r.valueOf,r.palette):a==="tinted"?Ft(o,t.referencePath,go):a==="role"?Ft(o,t.referencePath):n},fadeUnhovered(t,n,o){let a=new Set(e.hoveredRowWalks);return a.size>0?t.map((r,s)=>{let i=n[s]?.name??"";return a.has(i)||o!==void 0&&H(i).name===o?r:Ue}):t},get tubeMapTubeColors(){let t=e.layoutResult?.tubeMap,n=e.drawnGraph;return t&&n?this.fadeUnhovered(this.tubeColorsOf(n,t.pathColors),n.paths??[]):void 0},nodeSpan(t){return Br(t,e.nodeById,e.nodeNeighbors)},get hoverDrawing(){let t=e.hoveredPanel;return(t===null?void 0:e.layoutResult?.tubeMapPanels?.[t]?.result.tubeMap)??e.layoutResult?.tubeMap},get hoverGraph(){return this.hoverDrawing?.graph??e.drawnGraph},get hoverNodeById(){let t=this.hoverGraph;return t===e.drawnGraph?e.nodeById:t&&Cr(t)},get hoverNeighbors(){let t=this.hoverGraph;return t===e.drawnGraph?e.nodeNeighbors:t&&Z(t)}})).views(e=>({get pathLegend(){let t=e.drawnGraph?.paths;return(e.layoutResult?.tubeMap?e.tubeColorKind==="path":e.drawPaths)&&t&&je(t.length)&&!t.some(o=>o.members)?ve(t,e.tubeMapTubeColors):[]},get hoveredSpan(){let t=e.hoveredNode,n=e.hoveredBubble;return t!==null?Br(t,e.hoverNodeById,e.hoverNeighbors):n&&!n.offReference?{start:n.start,end:n.end}:void 0},get hoverHighlight(){let t=e.graphRegion,n=this.hoveredSpan;return t&&n&&e.chosenHover!=="off"?{refName:t.refName,assemblyName:t.assemblyName,...n}:void 0}}));var _r=Or.views(e=>({get host(){let t=e.containingView;return Xo(t)?t:void 0}})).views(e=>({get pairedViewId(){return e.host?.id??e.connectedViewId}})).views(e=>({get contributingAssemblies(){let t=e.graph,n=t?q(t):[];return t?cr(t,{maxGap:n.length>0?Rt(n):1/0}):[]}})).views(e=>({get assemblyResolver(){let{assemblyManager:t}=U(e),n=e.sourceAdapter?.assemblyNameToPanSN,o=new Map(Object.entries(n??{}).map(([r,s])=>[s,r])),a=r=>r!==void 0&&t.has(r)?t.get(r)?.name??r:void 0;return r=>a(o.get(r))??a(r)},get geneTracksByAssembly(){let t=new Map;for(let n of e.sessionTracks)if(ct.has(n.adapterType))for(let o of n.assemblies)t.set(o,[...t.get(o)??[],n]);return new Map([...t].flatMap(([n,o])=>{let a=dt(o,"");return a?[[n,a]]:[]}))}})).views(e=>({get launchableAssemblies(){return dr(mr(e.contributingAssemblies,e.graphRegion),e.assemblyResolver)},get canHighlightInLinearView(){let t=e.graphRegion;return t!==void 0&&Be({views:[...U(e).views],connectedViewId:e.pairedViewId,assemblyName:t.assemblyName})!==void 0},nodeLaunchTargets(t){let n=e.nodeById?.get(t),o=n?sr(n):void 0,a=o?Ce(e.assemblyResolver,o):void 0,r=e.graphRegion,s=r?e.nodeSpan(t):void 0,i=r&&s?{sample:r.assemblyName,haplotype:void 0,refName:r.refName,...s}:void 0;return{own:o&&a?{location:en(o),assembly:a}:void 0,reference:r&&i?{location:en(i),assembly:r.assemblyName}:void 0,highlight:r&&i?{location:i,assembly:r.assemblyName}:void 0}}}));var $r=_r.views(e=>({get walkStripShown(){return zt({walkStrip:e.walkStrip,mode:{drawsNodes:e.modeDrawsNodes},drawsPicture:!!e.layoutResult?.tubeMap||!!e.walkRowBars,walks:e.graph?.paths?.length??0,host:!!e.host})},get walkStripRows(){let t=this.walkStripShown?e.cutWalkRows:void 0;return t?{...t,rows:Me(t.rows,e.walkRowSamples)}:void 0},get walkStripFrame(){let t=this.walkStripRows;if(t)return Ie(t,{width:e.paneWidth})},get cutsWholeWalks(){return Ut(Y(e.chosenLayoutMode),{walkStrip:e.walkStrip,host:!!e.host})},get walkStripMarks(){let t=this.walkStripRows,n=e.hoveredNode??e.selectedNode,o=n===null?void 0:e.nodeById?.get(n);return t&&o&&e.graph?Kt(e.graph,[t.reference,...t.rows],o):[]},rowLocation(t,n){let o={sample:t.sample,haplotype:t.haplotype===void 0?void 0:`${t.sample}#${t.haplotype}`};return{...o,assembly:Ce(e.assemblyResolver,o),span:{refName:n.contig,...Je(n,t.bp)}}},get walkStripLocator(){let t=e.stripHover?e.hoveredNode:null;return t===null?void 0:it(e.nodePositions?.[t],e.toScreen)}})).views(e=>({get walkGeneReads(){let t=e.walkRowBars??e.walkStripRows;if(!t||!e.showGenes)return;let n=[],o=0,a=0;for(let r of t.rows){if(!r.axis){a++;continue}let{assembly:s,span:i}=e.rowLocation(r,r.axis),c=s?e.geneTracksByAssembly.get(s):void 0;if(!s||!c){o++;continue}n.push({row:r.name,trackId:c.trackId,region:{assemblyName:s,...i}})}return{reads:n.slice(0,Wt),gaps:{untracked:o,unplaced:a,unread:Math.max(0,n.length-Wt)}}},get walkRowGeneGaps(){return this.walkGeneReads?.gaps},walkRowLaunchTarget(t,n=e.walkRowBars){let o=n?[n.reference,...n.rows][t]:void 0;if(!o?.axis)return;let{sample:a,haplotype:r,assembly:s,span:i}=e.rowLocation(o,o.axis);return{label:o.label,assembly:t===0?e.graphRegion?.assemblyName:s,location:{sample:a,haplotype:r,...i}}},get walkRowGenes(){let t=e.walkRowBars??e.walkStripRows;if(!t||!e.showGenes)return;let n=new Map(e.walkGeneFeatures??[]);return e.geneFeatures&&n.set(t.reference.name,e.geneFeatures),n.size?Vn([t.reference,...t.rows],n):void 0}}));var Hr=$r.views(e=>({get xIsReferenceBp(){return e.layoutResult?.referenceAxis===!0&&Y(e.drawnLayoutMode??e.chosenLayoutMode).cutMargins}})).views(e=>({get hostPlacesX(){let{host:t,graphRegion:n}=e;return t!==void 0&&t.initialized&&n!==void 0&&e.xIsReferenceBp&&!t.dynamicBlocks.contentBlocks.some(o=>o.refName===n.refName&&o.reversed)}})).views(e=>({get hostBpFrame(){let{host:t,graphRegion:n}=e;return t?.initialized&&n?jo(t,n):void 0}})).views(e=>({get hostFrame(){return e.hostPlacesX?e.hostBpFrame:void 0},get tubeMapPicture(){let t=e.layoutResult?.tubeMap;return t?po(t):void 0},get tubeMapReference(){let t=e.layoutResult?.tubeMap;return t?io(t):void 0},get tubeMapDeviations(){let t=e.layoutResult?.tubeMap;return t?.coarse?co(t,t.coarse.deviations):[]},get tubeMapConnectedBoxes(){let t=this.tubeMapReference,{layoutResult:n}=e;return t&&!n?.referenceAxis&&!n?.tubeMapPanels?[...t.values()].flat():void 0}})).views(e=>({get tubeMapGenes(){let t=e.tubeMapReference;return e.showGenes&&!e.host&&t&&e.backboneGenes&&!e.layoutResult?.tubeMapPanels?To(t,e.backboneGenes):[]},get referenceStripApplies(){return!!e.host?.initialized&&!!e.layoutResult&&e.drawsNodes&&!e.hostPlacesX&&!e.facetPanels}})).views(e=>({get referenceStripBlocks(){let{graph:t}=e;if(!e.showReferenceStrip||!e.referenceStripApplies||!t)return[];let n=Co(t,{colorScheme:e.effectiveColorScheme,referenceRamp:e.referenceRamp,walks:e.walkLift?.walks}),o=e.walkLift?void 0:e.openBubbleFocus;return o?n.map(a=>o.nodeIds.has(a.node)?a:{...a,colors:[Ue],faded:!0}):n}})).views(e=>({get referenceStripShown(){return e.referenceStripBlocks.length>0&&e.hostBpFrame!==void 0},get referenceStripOverhangs(){let t=e.hostBpFrame;if(!t||e.referenceStripBlocks.length===0)return!1;let{left:n,right:o}=Bo(e.referenceStripBlocks,t,e.paneWidth);return n>0||o>0},get referenceStripFaded(){return e.referenceStripBlocks.some(t=>t.faded)}})).views(e=>({get referenceStripLit(){if(!e.referenceStripShown)return;let t=e.hoveredNode===null?e.hoveredBubble:null;if(t&&!t.offReference){let a=e.bubbleHalos.find(r=>at(r.bubble,t));return{start:t.start,end:t.end,anchor:a?e.toScreen(a.labelAt):void 0}}let n=e.hoveredNode??e.selectedNode,o=n===null?void 0:e.nodeSpan(n);return o&&n!==null?{...o,anchor:it(e.nodePositions?.[n],e.toScreen)}:void 0},referenceStripNodeAt(t,n){let o=e.hostBpFrame;return e.referenceStripShown&&o?Oo(e.referenceStripBlocks,o,t,n):void 0},get referenceStripZonePx(){return e.referenceStripShown?Io:0}}));var za=3e3,Ua=350,Ka=34;function Ja(e){let t=[0];for(let n=1;n<e.length;n++)t.push(t[n-1]+Math.hypot(e[n].x-e[n-1].x,e[n].y-e[n-1].y));return t}function qa(e,t){if(e.length===1||t===1)return Array.from({length:t},()=>({...e[0]}));let n=Ja(e),o=n.at(-1),a=[],r=1;for(let s=0;s<t;s++){let i=o*s/(t-1);for(;r<e.length-1&&n[r]<i;)r++;let c=n[r]-n[r-1],d=c>0?(i-n[r-1])/c:0,m=e[r-1],p=e[r];a.push({x:m.x+(p.x-m.x)*d,y:m.y+(p.y-m.y)*d})}return a}var Za=400,Wr=1.8,Qa=.1;function _g(e,t,n,o,a){let r=y=>({x:(y.x*t.scaleX+t.translateX-o.translateX)/o.scaleX,y:(y.y*t.scaleY+t.translateY-o.translateY)/o.scaleY}),s={};for(let[y,k]of Object.entries(n)){let b=e[y];b?.length&&k.length&&(s[y]=qa(b.map(r),k.length))}let i=new Map,c=(y,k)=>{let b=i.get(y);b?b.push(k):i.set(y,[k])};for(let y of a){let{from:k,to:b}=y;if(k!==b&&n[k]?.length&&n[b]?.length){let L=ke(y);c(k,{id:b,side:L.to}),c(b,{id:k,side:L.from})}}let d=new Map,m=y=>d.get(y.id)??(y.side==="start"?s[y.id][0]:s[y.id].at(-1)),p=Object.keys(s),l=[];for(let y of p)for(let k of i.get(y)??[]){if(s[k.id]||d.has(k.id))continue;let b=i.get(k.id).find(L=>L.id===y);d.set(k.id,{...m(b)}),p.push(k.id),l.push(k.id)}let u=new Map(l.map((y,k)=>[y,k])),h=new Float64Array(l.map(y=>d.get(y).x)),f=new Float64Array(l.map(y=>d.get(y).y)),g=new Float64Array(l.length),w=new Float64Array(l.length),x=l.map((y,k)=>i.get(y).flatMap(b=>{let L=u.get(b.id);if(L===void 0){let R=m(b);return g[k]+=R.x,w[k]+=R.y,[]}return[L]})),v=l.map(y=>i.get(y).length);for(let y=0;y<Za;y++){let k=0;for(let b=0;b<l.length;b++){let L=g[b],R=w[b];for(let N of x[b])L+=h[N],R+=f[N];let S=Wr*(L/v[b]-h[b]),M=Wr*(R/v[b]-f[b]);k=Math.max(k,Math.abs(S*o.scaleX)+Math.abs(M*o.scaleY)),h[b]+=S,f[b]+=M}if(k<Qa)break}l.forEach((y,k)=>{s[y]=n[y].map(()=>({x:h[k],y:f[k]}))});for(let[y,k]of Object.entries(n))s[y]??=k.map(b=>({...b}));return s}function es(e,t){let n=0,o=1/0;return e.forEach((a,r)=>{let s=(a.x-t.x)**2+(a.y-t.y)**2;s<o&&(o=s,n=r)}),n}function $g(e,t,n,o){let a=(r,s)=>{let i=n[r],c=o[r];if(!i||!c||c.length===0)return{x:0,y:0};let d=es(c,s);return{x:i[d].x-c[d].x,y:i[d].y-c[d].y}};return Object.fromEntries(Object.entries(e).map(([r,s])=>{let i=t[Number(r)],c=a(i?.from??"",s[0]),d=a(i?.to??"",s.at(-1));return[r,s.map((m,p)=>{let l=s.length>1?p/(s.length-1):0;return{x:m.x+c.x+(d.x-c.x)*l,y:m.y+c.y+(d.y-c.y)*l}})]}))}function Fr(e,t,{ids:n,alpha:o}){let a=(r,s)=>{for(let i=0;s&&i<s.count;i++){let c=r[s.start+i];c.color=$n(c.color,o)}};for(let r of n)a(e.nodeStrokes,e.nodeStrokeRuns.get(r));t.forEach(({from:r,to:s},i)=>{(n.has(r)||n.has(s))&&(a(e.edgeCurves,e.edgeCurveRuns.get(i)),a(e.arrows,e.arrowRuns.get(i)))})}function ts(e){return e<.5?4*e*e*e:1-(-2*e+2)**3/2}function Hg(e,t,n,o){return!(e.referenceAxis||t.referenceAxis||e.pixelRows||t.pixelRows||t.tubeMap||o||n>za)}function Wg(){return typeof requestAnimationFrame<"u"&&!("matchMedia"in window&&window.matchMedia("(prefers-reduced-motion: reduce)").matches)}function Fg(e,t,n){let o={frame:0,finish:()=>{e(1)}},a=0,r=performance.now(),s=()=>{if(!t()){n();return}let i=performance.now();a+=Math.min(i-r,Ka),r=i;let c=Math.min(1,a/Ua);e(ts(c)),c<1?o.frame=requestAnimationFrame(s):n()};return o.frame=requestAnimationFrame(s),o}function Dg(e,t,n,o){for(let[a,r]of Object.entries(e)){let s=t[a],i=n[a];!s||!i||r.forEach((c,d)=>{c.x=o===1?i[d].x:s[d].x+(i[d].x-s[d].x)*o,c.y=o===1?i[d].y:s[d].y+(i[d].y-s[d].y)*o})}}var ns=8,os=19,Dr=Pe+os,rs=48;function as(e,t,n){if(!(!e||!t))return qe(e.rowPx,e.barPx)?n:{untracked:0,unread:0,...n,crowded:!0}}var dw=Hr.views(e=>({get paneCeiling(){return Math.max(rt,e.paneHeight??Jn)},get fitRoom(){return e.host?this.canvasHeight:this.paneCeiling},get walkRowPitch(){let t=e.walkRowBars;if(!t)return;let n=this.fitRoom,o=(e.walkRowGroups?.sections.length??0)*lo;return Ze(t.rows.length+1,n-this.fitPadTopBase-B-o)},get walkRowPlacement(){let t=this.walkRowPitch;return t?fo(e.walkRowGroups?.sections??[],t.rowPx):void 0},get walkRowGeneKey(){return as(this.walkRowPitch,!!e.walkRowGenes?.size,e.walkRowGeneGaps)},get drawnRowLabels(){let t=this.walkRowPlacement,n=fe(e.walkRowBars,e.layoutResult,this.walkRowPitch);return e.walkRowBars&&t?n.map((o,a)=>({...o,y:t.rowY(a)})):n},get visibleRowLabels(){return this.drawnRowLabels.flatMap(({label:t,y:n})=>{let o=e.toScreen({x:0,y:n}).y;return o>=0&&o<=this.canvasHeight?[{label:t,y:n,top:o}]:[]})},get fitPadLeft(){return this.drawnRowLabels.reduce((t,n)=>Math.max(t,An(n.label,0).x1+6),B)},get layoutBounds(){let t=e.layoutResult,n=e.walkRowBars,o=n&&t?.extent?he(n,this.walkRowPitch):void 0;return t?Te(t,{region:e.graphRegion,extent:o&&{...o,maxY:o.maxY+(this.walkRowPlacement?.headersPx??0)}}):void 0},get hoveredWalkRowText(){let t=e.walkRowBars,n=e.hoveredWalkRow;if(!t||n===null||this.walkRowPitch?.readouts!==!1)return;let o=t.reference.name===n,a=o?t.reference:t.rows.find(r=>r.name===n);return a?{label:a.label,readout:Dn(a,o?void 0:t.reference,t.unit,a.call)}:void 0},walkRowAt(t,n){let o=e.walkRowBars,a=this.walkRowPitch,r=this.walkRowPlacement;if(!o||!a||!r)return;let s=r.rowAt((n-e.translateY)/e.scaleY,o.rows.length+1),i=[o.reference,...o.rows][s],c=r.rowY(s)*e.scaleY+e.translateY,d=(t-e.translateX)/e.scaleX-o.origin;return i&&Math.abs(n-c)<=a.barPx/2+2&&d>=0&&d<=i.bp?s:void 0},get fitPadTopBase(){let t=Eo(e.tubeMapGenes);return B+Math.max(0,t-1)*Go+e.referenceStripZonePx},get legendRoom(){let t=this.layoutBounds,{width:n,height:o}=e.legendSize;if(!t||t.w<=0||n===0||e.facetPanels||e.tubeMapReads)return;if(e.hostPlacesX)return"top";let a=this.fitPadTopBase,r=this.fitRoom,s=m=>(e.paneWidth-this.fitPadLeft-m)/t.w,i=m=>e.pixelRows?t.h+m+B<=r?1/0:0:(r-m-B)/t.h,c=Math.min(s(n+2*ee),i(a));return Math.min(s(B),i(a+o+ee))>=c?"top":"right"},get fitPadTop(){return this.fitPadTopBase+(this.legendRoom==="top"?e.legendSize.height+ee:0)},get fitPadRight(){return this.legendRoom==="right"?Math.max(B,e.legendSize.width+2*ee):B},get minFitScale(){let t=this.layoutBounds,n=e.layoutResult,o=n?.tubeMap?.layout.tracks[0]?.width;return t&&t.h>0&&o&&!n.referenceAxis?Math.min(Zn/o,(this.paneCeiling-this.fitPadTop-B)/t.h):0},get facetSpec(){let{field:t,domain:n,columns:o}=e.facetSetting;return t===""?void 0:n.length===0&&o===void 0?t:{field:t,domain:[...n],...o===void 0?{}:{columns:o}}},get facetPlacement(){let t=e.facetPanels,{field:n,domain:o}=e.facetSetting;return t?nt(t.map(a=>a.walks[0].name),e.hostPlacesX||n===""?"walk":n,o):void 0},facetGridIn(t){let n=this.facetPlacement,o=this.layoutBounds;return n&&o&&o.w>0?et({count:n.count,bounds:o,pixelRows:e.pixelRows,width:e.paneWidth,room:t,columns:e.hostPlacesX?1:n.columns??e.facetSetting.columns}):void 0},get facetGrid(){return this.facetGridIn(this.fitRoom-Dr)},get tooltipRightPx(){let{width:t,height:n}=e.legendSize,o=ee+e.referenceStripZonePx+n;return!e.facetPanels&&t>0&&o>this.canvasHeight-rs?t+2*ee:ns},get canvasHeight(){let t=this.layoutBounds,n=this.paneCeiling;if(!t)return n;let o=this.facetGrid;if(o)return Math.max(rt,o.total+Dr);let a=Math.max(rt,e.legendSize.height+2*ee+e.referenceStripZonePx),r=this.fitPads,s=r.top+r.bottom;if(e.pixelRows)return Math.min(n,Math.max(a,t.h+s));let i=e.paneWidth-r.left-r.right;return t.w>0&&i>0?Math.min(n,Math.max(a,t.h*Math.max(i/t.w,this.minFitScale)+s)):n},get viewBox(){let t=this.facetGrid;return t?{width:t.width,height:t.height}:{width:e.paneWidth,height:this.canvasHeight}},get fitPads(){return this.facetGrid?{left:K,top:K,right:K,bottom:K}:{left:this.fitPadLeft,top:this.fitPadTop,right:this.fitPadRight,bottom:B}},get usableHeight(){let{top:t,bottom:n}=this.fitPads;return this.viewBox.height-t-n},get fittedTransform(){let t=this.layoutBounds,{width:n,height:o}=this.viewBox,a=this.fitPads;return t?Ae(t,n,o,e.pixelRows,{minScale:this.facetGrid?0:this.minFitScale,padLeft:a.left,padTop:a.top,padRight:a.right,padBottom:a.bottom}):void 0}})).views(e=>({viewportToBuild(){return Yn(oo(e),to)},applySelection(t){let n=e.selectedNode;t.setNodeHighlights(n===null?new Map:new Map([[n,eo]]))},get hoverLayerNode(){let{litNode:t,selectedNode:n}=e;return t===n?null:t},get paintTransform(){let t=Do();return{scaleX:e.scaleX*t,scaleY:e.scaleY*t,translateX:e.translateX*t,translateY:e.translateY*t,dpr:t}}})).views(e=>({paint(t){t.updateTransform(e.paintTransform),t.render(e.referenceStripShown?[0,0,0,0]:qn)}})).views(e=>({buildDrawing(t,n){let{graph:o,nodeById:a,layoutResult:r,deletionDrawing:s}=e;if(!o||!a||!r||!s)return;Ge(e.viewportDirty,e.positionsVersion);let i=Pt(()=>e.viewportToBuild()),c=Ke({..._e(r,s,{drawsRows:!!e.walkRowBars}),graph:o,nodeById:a,colorScheme:e.effectiveColorScheme,contigThickness:e.contigThickness,connectorThickness:e.connectorThickness,drawPaths:n,nodeWidth:e.nodeWidth,highlight:t,axis:Pt(()=>e.axisScale),linearLayout:e.linearLayout,viewportBounds:i,referenceRamp:e.referenceRamp,version:e.positionsVersion}),d=e.morphEntering;return d?.layout===r&&Fr(c,o.edges,d),{batch:c,viewportBounds:i}},get overlayLabels(){return Lo(e)},hoveredOn(t){let n=e.hoveredNode,o=n?e.nodeById?.get(n):void 0;return o?Ao(t,o.id,o.length)??"not on this walk":void 0},get figureUnavailable(){return e.layoutResult?e.walkRowGroups?"The SVG export cannot group walk rows yet: set Group by... to None first":e.drawsNodes||e.walkRowBars?void 0:`${Y(e.chosenLayoutMode).label} draws a picture of its own, which the SVG export does not`:"Nothing is drawn yet"},figure(){let{graph:t,layoutResult:n}=e;return t&&n&&!this.figureUnavailable?nn(t,n,{width:e.paneWidth,height:e.paneCeiling,walks:e.walkLayers,facet:e.facetSpec,colorScheme:e.effectiveColorScheme,nodeWidth:e.nodeWidth,showDeletionEdges:e.showDeletionEdges,linearLayout:e.linearLayout,contigThickness:e.contigThickness,connectorThickness:e.connectorThickness,region:e.graphRegion,colorDomain:e.statedColorDomain,genes:e.showGenes?e.backboneGenes:void 0,walkRows:e.walkRowBars,walkRowPitch:e.walkRowPitch,rowGenes:e.walkRowGenes,rowGeneGaps:e.walkRowGeneGaps,walkStrip:e.walkStripRows&&{rows:e.walkStripRows,rowGenes:e.walkRowGenes,rowGeneGaps:e.walkRowGeneGaps}}):void 0}})).views(e=>({get followsHostView(){let t=e.layoutResult;return!!e.host&&!e.hostPlacesX&&!!t&&!t.referenceAxis&&!t.pixelRows&&!t.tubeMap&&!e.facetGrid}}));var fn=W(D("path",{d:"M3 16h5v-2H3zm6.5 0h5v-2h-5zm6.5 0h5v-2h-5zM3 20h2v-2H3zm4 0h2v-2H7zm4 0h2v-2h-2zm4 0h2v-2h-2zm4 0h2v-2h-2zM3 12h8v-2H3zm10 0h8v-2h-8zM3 4v4h18V4z"}),"LineStyle");var Xr=W(D("path",{d:"M9.01 14H2v2h7.01v3L13 15l-3.99-4zm5.98-1v-3H22V8h-7.01V5L11 9z"}),"CompareArrows");var Vr=W(D("path",{d:"M17 5h-2V3h2zm-2 16h2v-2.59L19.59 21 21 19.59 18.41 17H21v-2h-6zm4-12h2V7h-2zm0 4h2v-2h-2zm-8 8h2v-2h-2zM7 5h2V3H7zM3 17h2v-2H3zm2 4v-2H3c0 1.1.9 2 2 2M19 3v2h2c0-1.1-.9-2-2-2m-8 2h2V3h-2zM3 9h2V7H3zm4 12h2v-2H7zm-4-8h2v-2H3zm0-8h2V3c-1.1 0-2 .9-2 2"}),"HighlightAlt");var ss="Linear genome view",is="Linear synteny view",cs="No synteny track in this session aligns these assemblies";function jr({label:e,icon:t,entries:n,entryLabel:o,onSelect:a,disabledHelpText:r,nameTheOnlyEntry:s=!0}){let[i]=n,c=r?[{label:e,icon:t,disabled:!0,disabledHelpText:r,onClick:()=>{}}]:[];return n.length===0?c:n.length===1&&i?[{label:s?`${e} \u2014 ${o(i)}`:e,icon:t,onClick:a(i)}]:[{label:e,icon:t,type:"subMenu",subMenu:n.map(d=>({label:o(d),onClick:a(d)}))}]}function vw({contributors:e,linearContributors:t=e,syntenyTracks:n,onShowLinear:o,onShowSynteny:a}){let r=n[0]?.coverage??e.length;return[...jr({label:ss,icon:fn,entries:t,entryLabel:s=>`${s.sample} ${ne(s)}`,onSelect:s=>()=>{o({location:s,assembly:s.sample})}}),...e.length>=2?jr({label:`${is} (${r} assemblies)`,icon:Xr,entries:n,entryLabel:s=>s.coverage<r?`${s.name} (${s.coverage} of ${r})`:s.name,nameTheOnlyEntry:!1,disabledHelpText:cs,onSelect:s=>()=>{a(s.trackId)}}):[]]}function Mw({own:e,reference:t,highlight:n,onShowLinear:o,onHighlight:a}){let r=[e?{label:`Open in ${e.assembly} \u2014 ${ne(e.location)}`,target:e}:void 0,t&&t.assembly!==e?.assembly?{label:`Open in ${t.assembly} \u2014 around this node`,target:t}:void 0].filter(s=>s!==void 0);return[...a&&n?[{label:`Highlight in ${n.assembly}`,icon:Vr,onClick:()=>{a(n)}}]:[],...r.map(({label:s,target:i})=>({label:s,icon:fn,onClick:()=>{o(i)}}))]}var Aw=W(D("path",{d:"M19 15.18V7c0-2.21-1.79-4-4-4s-4 1.79-4 4v10c0 1.1-.9 2-2 2s-2-.9-2-2V8.82C8.16 8.4 9 7.3 9 6c0-1.66-1.34-3-3-3S3 4.34 3 6c0 1.3.84 2.4 2 2.82V17c0 2.21 1.79 4 4 4s4-1.79 4-4V7c0-1.1.9-2 2-2s2 .9 2 2v8.18c-1.16.41-2 1.51-2 2.82 0 1.66 1.34 3 3 3s3-1.34 3-3c0-1.3-.84-2.4-2-2.82"}),"Route");var Iw=W(D("path",{d:"M19.14 12.94c.04-.3.06-.61.06-.94 0-.32-.02-.64-.07-.94l2.03-1.58c.18-.14.23-.41.12-.61l-1.92-3.32c-.12-.22-.37-.29-.59-.22l-2.39.96c-.5-.38-1.03-.7-1.62-.94l-.36-2.54c-.04-.24-.24-.41-.48-.41h-3.84c-.24 0-.43.17-.47.41l-.36 2.54c-.59.24-1.13.57-1.62.94l-2.39-.96c-.22-.08-.47 0-.59.22L2.74 8.87c-.12.21-.08.47.12.61l2.03 1.58c-.05.3-.09.63-.09.94s.02.64.07.94l-2.03 1.58c-.18.14-.23.41-.12.61l1.92 3.32c.12.22.37.29.59.22l2.39-.96c.5.38 1.03.7 1.62.94l.36 2.54c.05.24.24.41.48.41h3.84c.24 0 .44-.17.47-.41l.36-2.54c.59-.24 1.13-.56 1.62-.94l2.39.96c.22.08.47 0 .59-.22l1.92-3.32c.12-.22.07-.47-.12-.61zM12 15.6c-1.98 0-3.6-1.62-3.6-3.6s1.62-3.6 3.6-3.6 3.6 1.62 3.6 3.6-1.62 3.6-3.6 3.6"}),"Settings");var _w=W(D("path",{d:"M12 4.5C7 4.5 2.73 7.61 1 12c1.73 4.39 6 7.5 11 7.5s9.27-3.11 11-7.5c-1.73-4.39-6-7.5-11-7.5M12 17c-2.76 0-5-2.24-5-5s2.24-5 5-5 5 2.24 5 5-2.24 5-5 5m0-8c-1.66 0-3 1.34-3 3s1.34 3 3 3 3-1.34 3-3-1.34-3-3-3"}),"Visibility");export{W as a,Qo as b,ut as c,pa as d,Y as e,Ut as f,fa as g,ga as h,wa as i,Jt as j,qt as k,ne as l,ba as m,sr as n,z as o,Ra as p,Zt as q,Lc as r,Qt as s,Nc as t,Pc as u,Ac as v,br as w,_w as x,_g as y,$g as z,Hg as A,Wg as B,Fg as C,Dg as D,ln as E,Xo as F,us as G,Jr as H,hs as I,ea as J,Yo as K,Dh as L,jh as M,Uh as N,ns as O,os as P,Dr as Q,dw as R,fn as S,vw as T,Mw as U,Aw as V,Iw as W};
+//# sourceMappingURL=chunk-GRTN25B6.js.map