iosm-cli 0.1.2 → 0.1.3

package/dist/core/semantic/types.d.ts

@@ -0,0 +1,151 @@
+export type SemanticScope = "user" | "project";
+export type SemanticProviderType = "openrouter" | "ollama" | "custom_openai";
+export type SemanticAction = "status" | "index" | "rebuild" | "query";
+export type SemanticStaleReason = "missing_index" | "provider_changed" | "chunking_changed" | "index_filters_changed" | "files_changed" | "dimension_mismatch";
+export interface SemanticProviderConfig {
+    type: SemanticProviderType;
+    model: string;
+    baseUrl?: string;
+    apiKeyEnv?: string;
+    headers?: Record<string, string>;
+    batchSize: number;
+    timeoutMs: number;
+}
+export interface SemanticIndexConfig {
+    includeGlobs: string[];
+    excludeGlobs: string[];
+    chunkMaxChars: number;
+    chunkOverlapChars: number;
+    maxFileBytes: number;
+    maxFiles: number;
+}
+export interface SemanticSearchConfig {
+    enabled: boolean;
+    provider: SemanticProviderConfig;
+    index: SemanticIndexConfig;
+}
+export interface SemanticConfigFile {
+    semanticSearch?: Partial<{
+        enabled: boolean;
+        provider: Partial<{
+            type: SemanticProviderType;
+            model: string;
+            baseUrl: string;
+            apiKeyEnv: string;
+            headers: Record<string, string>;
+            batchSize: number;
+            timeoutMs: number;
+        }>;
+        index: Partial<{
+            includeGlobs: string[];
+            excludeGlobs: string[];
+            chunkMaxChars: number;
+            chunkOverlapChars: number;
+            maxFileBytes: number;
+            maxFiles: number;
+        }>;
+    }>;
+}
+export interface SemanticScopedLoadResult {
+    scope: SemanticScope;
+    path: string;
+    file: SemanticConfigFile;
+    error?: Error;
+}
+export interface SemanticMergedConfig {
+    config?: SemanticSearchConfig;
+    errors: string[];
+    scoped: SemanticScopedLoadResult[];
+}
+export interface SemanticFileFingerprint {
+    path: string;
+    size: number;
+    mtimeMs: number;
+    hash: string;
+    chunks: string[];
+}
+export interface SemanticIndexMeta {
+    version: 1;
+    cwd: string;
+    projectHash: string;
+    providerFingerprint: string;
+    providerType: SemanticProviderType;
+    model: string;
+    dimension: number;
+    builtAt: string;
+    chunkConfigFingerprint: string;
+    indexFilterFingerprint: string;
+    fileMap: Record<string, SemanticFileFingerprint>;
+}
+export interface SemanticIndexedChunk {
+    id: string;
+    path: string;
+    lineStart: number;
+    lineEnd: number;
+    preview: string;
+    hash: string;
+}
+export interface SemanticIndexedVector {
+    id: string;
+    vector: number[];
+    norm: number;
+}
+export interface SemanticChunkForEmbedding extends SemanticIndexedChunk {
+    text: string;
+}
+export interface SemanticIndexOperationResult {
+    action: "index" | "rebuild";
+    indexPath: string;
+    durationMs: number;
+    processedFiles: number;
+    newFiles: number;
+    changedFiles: number;
+    removedFiles: number;
+    reusedFiles: number;
+    chunks: number;
+    dimension: number;
+    builtAt: string;
+}
+export interface SemanticStatusResult {
+    action: "status";
+    configured: boolean;
+    enabled: boolean;
+    indexed: boolean;
+    stale: boolean;
+    staleReason?: SemanticStaleReason;
+    provider?: SemanticProviderType;
+    model?: string;
+    files: number;
+    chunks: number;
+    dimension?: number;
+    ageSeconds?: number;
+    indexPath: string;
+    configPathUser: string;
+    configPathProject: string;
+}
+export interface SemanticQueryHit {
+    score: number;
+    path: string;
+    lineStart: number;
+    lineEnd: number;
+    snippet: string;
+}
+export interface SemanticQueryResult {
+    action: "query";
+    query: string;
+    topK: number;
+    autoRefreshed: boolean;
+    hits: SemanticQueryHit[];
+}
+export type SemanticToolResult = SemanticStatusResult | SemanticIndexOperationResult | SemanticQueryResult;
+export declare class SemanticConfigError extends Error {
+}
+export declare class SemanticConfigMissingError extends Error {
+    readonly userConfigPath: string;
+    readonly projectConfigPath: string;
+    constructor(userConfigPath: string, projectConfigPath: string);
+}
+export declare class SemanticRebuildRequiredError extends Error {
+    constructor(message: string);
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/core/semantic/types.d.ts.map

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package/dist/core/semantic/types.js

@@ -0,0 +1,17 @@
+export class SemanticConfigError extends Error {
+}
+export class SemanticConfigMissingError extends Error {
+    constructor(userConfigPath, projectConfigPath) {
+        super(`Semantic search config not found. Create one with /semantic setup or write ${userConfigPath} (user) or ${projectConfigPath} (project).`);
+        this.name = "SemanticConfigMissingError";
+        this.userConfigPath = userConfigPath;
+        this.projectConfigPath = projectConfigPath;
+    }
+}
+export class SemanticRebuildRequiredError extends Error {
+    constructor(message) {
+        super(message);
+        this.name = "SemanticRebuildRequiredError";
+    }
+}
+//# sourceMappingURL=types.js.map

package/dist/core/semantic/types.js.map

@@ -0,0 +1 @@
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Create one with /semantic setup or write ${userConfigPath} (user) or ${projectConfigPath} (project).`,\n\t\t);\n\t\tthis.name = \"SemanticConfigMissingError\";\n\t\tthis.userConfigPath = userConfigPath;\n\t\tthis.projectConfigPath = projectConfigPath;\n\t}\n}\n\nexport class SemanticRebuildRequiredError extends Error {\n\tconstructor(message: string) {\n\t\tsuper(message);\n\t\tthis.name = \"SemanticRebuildRequiredError\";\n\t}\n}\n"]}

package/dist/core/slash-commands.d.ts.map

@@ -1 +1 @@
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package/dist/core/slash-commands.js

@@ -31,6 +31,10 @@ export const BUILTIN_SLASH_COMMANDS = [
         name: "memory",
         description: "Memory manager: /memory (interactive), /memory <text>, /memory edit <index> <text>, /memory rm <index>",
     },
+    {
+        name: "semantic",
+        description: "Semantic search manager: /semantic (interactive UI), /semantic setup|status|index|rebuild|query <text> [--top-k N]",
+    },
     { name: "settings", description: "Open settings menu" },
     {
         name: "permissions",

package/dist/core/slash-commands.js.map

@@ -1 +1 @@
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type SlashCommandSource = \"extension\" | \"prompt\" | \"skill\";\n\nexport type SlashCommandLocation = \"user\" | \"project\" | \"path\";\n\nexport interface SlashCommandInfo {\n\tname: string;\n\tdescription?: string;\n\tsource: SlashCommandSource;\n\tlocation?: SlashCommandLocation;\n\tpath?: string;\n}\n\nexport interface BuiltinSlashCommand {\n\tname: string;\n\tdescription: string;\n}\n\nexport const BUILTIN_SLASH_COMMANDS: ReadonlyArray<BuiltinSlashCommand> = [\n\t{ name: \"init\", description: \"Initialize iosm.yaml and .iosm scaffold in current (or target) directory\" },\n\t{\n\t\tname: \"iosm\",\n\t\tdescription: \"Run IOSM auto-improvement loop: /iosm [target-index] [--max-iterations N] [--force-init]\",\n\t},\n\t{\n\t\tname: \"orchestrate\",\n\t\tdescription:\n\t\t\t\"Run orchestrated subagents: /orchestrate (--parallel|--sequential) --agents N [--max-parallel N] [--profile <name>|--profiles p1,p2] [--cwd p1,p2] [--locks l1,l2] [--worktree] [--depends 2>1,3>2] <task>\",\n\t},\n\t{\n\t\tname: \"agents\",\n\t\tdescription:\n\t\t\t\"Interactive agent menu: browse/use/create/edit/delete custom agents and inspect source precedence from .iosm/agents\",\n\t},\n\t{ name: \"subagent-runs\", description: \"List recent subagent runs from .iosm/subagents/runs\" },\n\t{\n\t\tname: \"subagent-resume\",\n\t\tdescription: \"Resume from prior subagent output: /subagent-resume [run-id] [extra instructions] (picker when omitted)\",\n\t},\n\t{ name: \"team-runs\", description: \"List recent team orchestration runs from .iosm/subagents/teams\" },\n\t{ name: \"team-status\", description: \"Show a team run status: /team-status [team-run-id] (picker when omitted)\" },\n\t{ name: \"cycle-list\", description: \"List IOSM cycles\" },\n\t{ name: \"cycle-plan\", description: \"Plan a new IOSM cycle: /cycle-plan [--id <id>] [--force] <goal...>\" },\n\t{ name: \"cycle-status\", description: \"Show IOSM cycle completeness and gates: /cycle-status [cycle-id]\" },\n\t{ name: \"cycle-report\", description: \"Show IOSM cycle report JSON: /cycle-report [cycle-id]\" },\n\t{\n\t\tname: \"mcp\",\n\t\tdescription:\n\t\t\t\"MCP server manager: /mcp (interactive UI), /mcp add <name> ..., /mcp list, /mcp tools [name], /mcp enable|disable|remove <name>\",\n\t},\n\t{\n\t\tname: \"memory\",\n\t\tdescription:\n\t\t\t\"Memory manager: /memory (interactive), /memory <text>, /memory edit <index> <text>, /memory rm <index>\",\n\t},\n\t{ name: \"settings\", description: \"Open settings menu\" },\n\t{\n\t\tname: \"permissions\",\n\t\tdescription:\n\t\t\t\"Permission controls: /permissions (interactive menu) or /permissions [ask|auto|yolo|status|hooks] and /permissions [allow|deny] [list|add|remove] <tool:match>\",\n\t},\n\t{ name: \"yolo\", description: \"Toggle permission prompts: /yolo [on|off|status]\" },\n\t{ name: \"model\", description: \"Select model (provider-first selector UI)\" },\n\t{ name: \"scoped-models\", description: \"Enable/disable models for Ctrl+P cycling\" },\n\t{ name: \"export\", description: \"Export session to HTML file: /export [output-path] (wizard when omitted)\" },\n\t{ name: \"share\", description: \"Share session as a secret GitHub gist\" },\n\t{ name: \"copy\", description: \"Copy last agent message to clipboard\" },\n\t{ name: \"name\", description: \"Set session display name\" },\n\t{ name: \"session\", description: \"Show session info and stats\" },\n\t{\n\t\tname: \"doctor\",\n\t\tdescription: \"Run runtime diagnostics (model/auth/MCP/CLI tools/hooks/paths) with optional interactive fixes\",\n\t},\n\t{ name: \"checkpoint\", description: \"Create/list checkpoints for safe rollback\" },\n\t{ name: \"rollback\", description: \"Rollback session tree to a checkpoint (picker when omitted)\" },\n\t{ name: \"changelog\", description: \"Show changelog entries\" },\n\t{ name: \"hotkeys\", description: \"Show all keyboard shortcuts\" },\n\t{ name: \"fork\", description: \"Create a new fork from a previous message\" },\n\t{ name: \"tree\", description: \"Navigate session tree (switch branches)\" },\n\t{ name: \"login\", description: \"Authenticate with provider (OAuth incl. Qwen + OpenRouter API key)\" },\n\t{ name: \"auth\", description: \"Alias for /login\" },\n\t{ name: \"logout\", description: \"Remove saved provider credentials (OAuth/API key)\" },\n\t{ name: \"new\", description: \"Start a new session\" },\n\t{ name: \"clear\", description: \"Alias for /new\" },\n\t{ name: \"compact\", description: \"Manually compact the session context\" },\n\t{ name: \"resume\", description: \"Resume a different session\" },\n\t{ name: \"reload\", description: \"Reload extensions, skills, prompts, and themes\" },\n\t{ name: \"quit\", description: \"Quit iosm\" },\n];\n"]}
+{"version":3,"file":"slash-commands.js","sourceRoot":"","sources":["../../src/core/slash-commands.ts"],"names":[],"mappings":"AAiBA,MAAM,CAAC,MAAM,sBAAsB,GAAuC;IACzE,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,0EAA0E,EAAE;IACzG;QACC,IAAI,EAAE,MAAM;QACZ,WAAW,EAAE,0FAA0F;KACvG;IACD;QACC,IAAI,EAAE,aAAa;QACnB,WAAW,EACV,4MAA4M;KAC7M;IACD;QACC,IAAI,EAAE,QAAQ;QACd,WAAW,EACV,qHAAqH;KACtH;IACD,EAAE,IAAI,EAAE,eAAe,EAAE,WAAW,EAAE,qDAAqD,EAAE;IAC7F;QACC,IAAI,EAAE,iBAAiB;QACvB,WAAW,EAAE,yGAAyG;KACtH;IACD,EAAE,IAAI,EAAE,WAAW,EAAE,WAAW,EAAE,gEAAgE,EAAE;IACpG,EAAE,IAAI,EAAE,aAAa,EAAE,WAAW,EAAE,0EAA0E,EAAE;IAChH,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,kBAAkB,EAAE;IACvD,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,oEAAoE,EAAE;IACzG,EAAE,IAAI,EAAE,cAAc,EAAE,WAAW,EAAE,kEAAkE,EAAE;IACzG,EAAE,IAAI,EAAE,cAAc,EAAE,WAAW,EAAE,uDAAuD,EAAE;IAC9F;QACC,IAAI,EAAE,KAAK;QACX,WAAW,EACV,iIAAiI;KAClI;IACD;QACC,IAAI,EAAE,QAAQ;QACd,WAAW,EACV,wGAAwG;KACzG;IACD;QACC,IAAI,EAAE,UAAU;QAChB,WAAW,EACV,oHAAoH;KACrH;IACD,EAAE,IAAI,EAAE,UAAU,EAAE,WAAW,EAAE,oBAAoB,EAAE;IACvD;QACC,IAAI,EAAE,aAAa;QACnB,WAAW,EACV,gKAAgK;KACjK;IACD,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,kDAAkD,EAAE;IACjF,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,EAAE,2CAA2C,EAAE;IAC3E,EAAE,IAAI,EAAE,eAAe,EAAE,WAAW,EAAE,0CAA0C,EAAE;IAClF,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,0EAA0E,EAAE;IAC3G,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,EAAE,uCAAuC,EAAE;IACvE,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,sCAAsC,EAAE;IACrE,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,0BAA0B,EAAE;IACzD,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,6BAA6B,EAAE;IAC/D;QACC,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,gGAAgG;KAC7G;IACD,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,2CAA2C,EAAE;IAChF,EAAE,IAAI,EAAE,UAAU,EAAE,WAAW,EAAE,6DAA6D,EAAE;IAChG,EAAE,IAAI,EAAE,WAAW,EAAE,WAAW,EAAE,wBAAwB,EAAE;IAC5D,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,6BAA6B,EAAE;IAC/D,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,2CAA2C,EAAE;IAC1E,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,yCAAyC,EAAE;IACxE,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,EAAE,oEAAoE,EAAE;IACpG,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,kBAAkB,EAAE;IACjD,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,mDAAmD,EAAE;IACpF,EAAE,IAAI,EAAE,KAAK,EAAE,WAAW,EAAE,qBAAqB,EAAE;IACnD,EAAE,IAAI,EAAE,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE;IAChD,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,sCAAsC,EAAE;IACxE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,4BAA4B,EAAE;IAC7D,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,gDAAgD,EAAE;IACjF,EAAE,IAAI,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE;CAC1C,CAAC","sourcesContent":["export type SlashCommandSource = \"extension\" | \"prompt\" | \"skill\";\n\nexport type SlashCommandLocation = \"user\" | \"project\" | \"path\";\n\nexport interface SlashCommandInfo {\n\tname: string;\n\tdescription?: string;\n\tsource: SlashCommandSource;\n\tlocation?: SlashCommandLocation;\n\tpath?: string;\n}\n\nexport interface BuiltinSlashCommand {\n\tname: string;\n\tdescription: string;\n}\n\nexport const BUILTIN_SLASH_COMMANDS: ReadonlyArray<BuiltinSlashCommand> = [\n\t{ name: \"init\", description: \"Initialize iosm.yaml and .iosm scaffold in current (or target) directory\" },\n\t{\n\t\tname: \"iosm\",\n\t\tdescription: \"Run IOSM auto-improvement loop: /iosm [target-index] [--max-iterations N] [--force-init]\",\n\t},\n\t{\n\t\tname: \"orchestrate\",\n\t\tdescription:\n\t\t\t\"Run orchestrated subagents: /orchestrate (--parallel|--sequential) --agents N [--max-parallel N] [--profile <name>|--profiles p1,p2] [--cwd p1,p2] [--locks l1,l2] [--worktree] [--depends 2>1,3>2] <task>\",\n\t},\n\t{\n\t\tname: \"agents\",\n\t\tdescription:\n\t\t\t\"Interactive agent menu: browse/use/create/edit/delete custom agents and inspect source precedence from .iosm/agents\",\n\t},\n\t{ name: \"subagent-runs\", description: \"List recent subagent runs from .iosm/subagents/runs\" },\n\t{\n\t\tname: \"subagent-resume\",\n\t\tdescription: \"Resume from prior subagent output: /subagent-resume [run-id] [extra instructions] (picker when omitted)\",\n\t},\n\t{ name: \"team-runs\", description: \"List recent team orchestration runs from .iosm/subagents/teams\" },\n\t{ name: \"team-status\", description: \"Show a team run status: /team-status [team-run-id] (picker when omitted)\" },\n\t{ name: \"cycle-list\", description: \"List IOSM cycles\" },\n\t{ name: \"cycle-plan\", description: \"Plan a new IOSM cycle: /cycle-plan [--id <id>] [--force] <goal...>\" },\n\t{ name: \"cycle-status\", description: \"Show IOSM cycle completeness and gates: /cycle-status [cycle-id]\" },\n\t{ name: \"cycle-report\", description: \"Show IOSM cycle report JSON: /cycle-report [cycle-id]\" },\n\t{\n\t\tname: \"mcp\",\n\t\tdescription:\n\t\t\t\"MCP server manager: /mcp (interactive UI), /mcp add <name> ..., /mcp list, /mcp tools [name], /mcp enable|disable|remove <name>\",\n\t},\n\t{\n\t\tname: \"memory\",\n\t\tdescription:\n\t\t\t\"Memory manager: /memory (interactive), /memory <text>, /memory edit <index> <text>, /memory rm <index>\",\n\t},\n\t{\n\t\tname: \"semantic\",\n\t\tdescription:\n\t\t\t\"Semantic search manager: /semantic (interactive UI), /semantic setup|status|index|rebuild|query <text> [--top-k N]\",\n\t},\n\t{ name: \"settings\", description: \"Open settings menu\" },\n\t{\n\t\tname: \"permissions\",\n\t\tdescription:\n\t\t\t\"Permission controls: /permissions (interactive menu) or /permissions [ask|auto|yolo|status|hooks] and /permissions [allow|deny] [list|add|remove] <tool:match>\",\n\t},\n\t{ name: \"yolo\", description: \"Toggle permission prompts: /yolo [on|off|status]\" },\n\t{ name: \"model\", description: \"Select model (provider-first selector UI)\" },\n\t{ name: \"scoped-models\", description: \"Enable/disable models for Ctrl+P cycling\" },\n\t{ name: \"export\", description: \"Export session to HTML file: /export [output-path] (wizard when omitted)\" },\n\t{ name: \"share\", description: \"Share session as a secret GitHub gist\" },\n\t{ name: \"copy\", description: \"Copy last agent message to clipboard\" },\n\t{ name: \"name\", description: \"Set session display name\" },\n\t{ name: \"session\", description: \"Show session info and stats\" },\n\t{\n\t\tname: \"doctor\",\n\t\tdescription: \"Run runtime diagnostics (model/auth/MCP/CLI tools/hooks/paths) with optional interactive fixes\",\n\t},\n\t{ name: \"checkpoint\", description: \"Create/list checkpoints for safe rollback\" },\n\t{ name: \"rollback\", description: \"Rollback session tree to a checkpoint (picker when omitted)\" },\n\t{ name: \"changelog\", description: \"Show changelog entries\" },\n\t{ name: \"hotkeys\", description: \"Show all keyboard shortcuts\" },\n\t{ name: \"fork\", description: \"Create a new fork from a previous message\" },\n\t{ name: \"tree\", description: \"Navigate session tree (switch branches)\" },\n\t{ name: \"login\", description: \"Authenticate with provider (OAuth incl. Qwen + OpenRouter API key)\" },\n\t{ name: \"auth\", description: \"Alias for /login\" },\n\t{ name: \"logout\", description: \"Remove saved provider credentials (OAuth/API key)\" },\n\t{ name: \"new\", description: \"Start a new session\" },\n\t{ name: \"clear\", description: \"Alias for /new\" },\n\t{ name: \"compact\", description: \"Manually compact the session context\" },\n\t{ name: \"resume\", description: \"Resume a different session\" },\n\t{ name: \"reload\", description: \"Reload extensions, skills, prompts, and themes\" },\n\t{ name: \"quit\", description: \"Quit iosm\" },\n];\n"]}

package/dist/core/system-prompt.d.ts.map

@@ -1 +1 @@
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package/dist/core/system-prompt.js

@@ -12,14 +12,15 @@ const toolDescriptions = {
     grep: "Search file contents for patterns (respects .gitignore)",
     find: "Find files by glob pattern (respects .gitignore)",
     ls: "List directory contents",
-    rg: "Run ripgrep directly for advanced regex search",
+    rg: "Run ripgrep directly for advanced regex search (prefer explicit path args, e.g. -n pattern .)",
     fd: "Run fd directly for fast file discovery",
-    ast_grep: "Run ast-grep for AST/syntax-aware structural code search",
-    comby: "Run comby for structural pattern search/rewrite previews (no in-place edits)",
+    ast_grep: "Run ast-grep for AST/syntax-aware structural code search (prefer run --pattern; retry with scan/-p on older versions)",
+    comby: "Run comby for structural pattern search/rewrite previews (prefer explicit -matcher; no in-place edits)",
     jq: "Run jq for JSON querying/transformation",
     yq: "Run yq for YAML/JSON/TOML querying/transformation",
     semgrep: "Run semgrep for structural/static security checks",
     sed: "Run sed for stream editing/extraction previews (no in-place edits)",
+    semantic_search: "Semantic embeddings search over the project index (actions: status, index, rebuild, query)",
     task: "Run a specialized subagent (supports profile, cwd, lock_key for optional write serialization, run_id/task_id, model override, background mode for detached runs, and agent=<custom name from .iosm/agents>)",
 };
 /** Build the system prompt with tools, guidelines, and context */
@@ -102,6 +103,7 @@ export function buildSystemPrompt(options = {}) {
     const hasYq = tools.includes("yq");
     const hasSemgrep = tools.includes("semgrep");
     const hasSed = tools.includes("sed");
+    const hasSemanticSearch = tools.includes("semantic_search");
     const hasRead = tools.includes("read");
     // File exploration guidelines
     if (hasBash && !hasGrep && !hasFind && !hasLs && !hasRg && !hasFd) {
@@ -110,6 +112,9 @@ export function buildSystemPrompt(options = {}) {
     else if (hasBash && (hasGrep || hasFind || hasLs || hasRg || hasFd)) {
         addGuideline("Prefer grep/find/ls/rg/fd tools over bash for codebase exploration (faster and less noisy)");
     }
+    if (hasRg || hasFd || hasAstGrep || hasComby || hasJq || hasYq || hasSemgrep || hasSed || hasSemanticSearch) {
+        addGuideline("Route work to specialized tools first: rg/fd (search/discovery), semantic_search (concept-level retrieval), ast_grep/comby (structural code queries), jq/yq (data/config transforms), semgrep (risk scans), sed (stream extraction)");
+    }
     if (hasAstGrep || hasComby) {
         addGuideline("Use ast_grep/comby for syntax-aware structural queries before falling back to broad regex");
     }
@@ -125,6 +130,17 @@ export function buildSystemPrompt(options = {}) {
     if (hasSed) {
         addGuideline("Use sed for preview/extraction workflows only; perform final file edits with edit/write");
     }
+    if (hasSemanticSearch) {
+        addGuideline("Use semantic_search for intent/meaning queries that are hard to express with regex; use rg/ast_grep for exact symbol and syntax matches");
+        addGuideline("If semantic_search reports stale/missing index, run semantic_search status and then semantic_search index (or rebuild when required) before semantic queries");
+    }
+    if (hasRg || hasAstGrep || hasComby) {
+        addGuideline("For rg/ast_grep/comby, pass explicit target paths to avoid cwd ambiguity; if syntax errors occur (especially ast_grep), retry once with version-compatible command forms before concluding no matches");
+    }
+    if (hasBash &&
+        (hasRg || hasFd || hasAstGrep || hasComby || hasJq || hasYq || hasSemgrep || hasSed || hasSemanticSearch)) {
+        addGuideline("If a required CLI tool is missing, install it first when permitted (rg/fd can be auto-managed; others via brew/apt/pipx/npm), then continue with that tool instead of broad bash fallback. For semantic_search, configure provider/index first via /semantic setup.");
+    }
     // Read before edit guideline
     if (hasRead && hasEdit) {
         addGuideline("Use read to examine files before editing. You must use this tool instead of cat or sed.");

package/dist/core/system-prompt.js.map

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* System prompt construction and project context loading\n */\n\nimport { getDocsPath, getExamplesPath, getReadmePath } from \"../config.js\";\nimport { formatSkillsForPrompt, type Skill } from \"./skills.js\";\n\n/** Tool descriptions for system prompt */\nconst toolDescriptions: Record<string, string> = {\n\tread: \"Read file contents\",\n\tbash: \"Execute bash commands (ls, grep, find, etc.)\",\n\tedit: \"Make surgical edits to files (find exact text and replace)\",\n\twrite: \"Create or overwrite files\",\n\tgrep: \"Search file contents for patterns (respects .gitignore)\",\n\tfind: \"Find files by glob pattern (respects .gitignore)\",\n\tls: \"List directory contents\",\n\trg: \"Run ripgrep directly for advanced regex search\",\n\tfd: \"Run fd directly for fast file discovery\",\n\tast_grep: \"Run ast-grep for AST/syntax-aware structural code search\",\n\tcomby: \"Run comby for structural pattern search/rewrite previews (no in-place edits)\",\n\tjq: \"Run jq for JSON querying/transformation\",\n\tyq: \"Run yq for YAML/JSON/TOML querying/transformation\",\n\tsemgrep: \"Run semgrep for structural/static security checks\",\n\tsed: \"Run sed for stream editing/extraction previews (no in-place edits)\",\n\ttask: \"Run a specialized subagent (supports profile, cwd, lock_key for optional write serialization, run_id/task_id, model override, background mode for detached runs, and agent=<custom name from .iosm/agents>)\",\n};\n\nexport interface BuildSystemPromptOptions {\n\t/** Custom system prompt (replaces default). */\n\tcustomPrompt?: string;\n\t/** Tools to include in prompt. Default: [read, bash, edit, write] */\n\tselectedTools?: string[];\n\t/** Optional one-line tool snippets keyed by tool name. */\n\ttoolSnippets?: Record<string, string>;\n\t/** Additional guideline bullets appended to the default system prompt guidelines. */\n\tpromptGuidelines?: string[];\n\t/** Text to append to system prompt. */\n\tappendSystemPrompt?: string;\n\t/** Working directory. Default: process.cwd() */\n\tcwd?: string;\n\t/** Pre-loaded context files. */\n\tcontextFiles?: Array<{ path: string; content: string }>;\n\t/** Pre-loaded skills. */\n\tskills?: Skill[];\n}\n\n/** Build the system prompt with tools, guidelines, and context */\nexport function buildSystemPrompt(options: BuildSystemPromptOptions = {}): string {\n\tconst {\n\t\tcustomPrompt,\n\t\tselectedTools,\n\t\ttoolSnippets,\n\t\tpromptGuidelines,\n\t\tappendSystemPrompt,\n\t\tcwd,\n\t\tcontextFiles: providedContextFiles,\n\t\tskills: providedSkills,\n\t} = options;\n\tconst resolvedCwd = cwd ?? process.cwd();\n\n\tconst now = new Date();\n\tconst dateTime = now.toLocaleString(\"en-US\", {\n\t\tweekday: \"long\",\n\t\tyear: \"numeric\",\n\t\tmonth: \"long\",\n\t\tday: \"numeric\",\n\t\thour: \"2-digit\",\n\t\tminute: \"2-digit\",\n\t\tsecond: \"2-digit\",\n\t\ttimeZoneName: \"short\",\n\t});\n\n\tconst appendSection = appendSystemPrompt ? `\\n\\n${appendSystemPrompt}` : \"\";\n\n\tconst contextFiles = providedContextFiles ?? [];\n\tconst skills = providedSkills ?? [];\n\n\tif (customPrompt) {\n\t\tlet prompt = customPrompt;\n\n\t\tif (appendSection) {\n\t\t\tprompt += appendSection;\n\t\t}\n\n\t\t// Append project context files\n\t\tif (contextFiles.length > 0) {\n\t\t\tprompt += \"\\n\\n# Project Context\\n\\n\";\n\t\t\tprompt += \"Project-specific instructions and guidelines:\\n\\n\";\n\t\t\tfor (const { path: filePath, content } of contextFiles) {\n\t\t\t\tprompt += `## ${filePath}\\n\\n${content}\\n\\n`;\n\t\t\t}\n\t\t}\n\n\t\t// Append skills section (only if read tool is available)\n\t\tconst customPromptHasRead = !selectedTools || selectedTools.includes(\"read\");\n\t\tif (customPromptHasRead && skills.length > 0) {\n\t\t\tprompt += formatSkillsForPrompt(skills);\n\t\t}\n\n\t\t// Add date/time and working directory last\n\t\tprompt += `\\nCurrent date and time: ${dateTime}`;\n\t\tprompt += `\\nCurrent working directory: ${resolvedCwd}`;\n\n\t\treturn prompt;\n\t}\n\n\t// Get absolute paths to documentation and examples\n\tconst readmePath = getReadmePath();\n\tconst docsPath = getDocsPath();\n\tconst examplesPath = getExamplesPath();\n\n\t// Build tools list based on selected tools.\n\t// Built-ins use toolDescriptions. Custom tools can provide one-line snippets.\n\tconst tools = selectedTools || [\"read\", \"bash\", \"edit\", \"write\"];\n\tconst toolsList =\n\t\ttools.length > 0\n\t\t\t? tools\n\t\t\t\t\t.map((name) => {\n\t\t\t\t\t\tconst snippet = toolSnippets?.[name] ?? toolDescriptions[name] ?? name;\n\t\t\t\t\t\treturn `- ${name}: ${snippet}`;\n\t\t\t\t\t})\n\t\t\t\t\t.join(\"\\n\")\n\t\t\t: \"(none)\";\n\n\t// Build guidelines based on which tools are actually available\n\tconst guidelinesList: string[] = [];\n\tconst guidelinesSet = new Set<string>();\n\tconst addGuideline = (guideline: string): void => {\n\t\tif (guidelinesSet.has(guideline)) {\n\t\t\treturn;\n\t\t}\n\t\tguidelinesSet.add(guideline);\n\t\tguidelinesList.push(guideline);\n\t};\n\n\tconst hasBash = tools.includes(\"bash\");\n\tconst hasEdit = tools.includes(\"edit\");\n\tconst hasWrite = tools.includes(\"write\");\n\tconst hasGrep = tools.includes(\"grep\");\n\tconst hasFind = tools.includes(\"find\");\n\tconst hasLs = tools.includes(\"ls\");\n\tconst hasRg = tools.includes(\"rg\");\n\tconst hasFd = tools.includes(\"fd\");\n\tconst hasAstGrep = tools.includes(\"ast_grep\");\n\tconst hasComby = tools.includes(\"comby\");\n\tconst hasJq = tools.includes(\"jq\");\n\tconst hasYq = tools.includes(\"yq\");\n\tconst hasSemgrep = tools.includes(\"semgrep\");\n\tconst hasSed = tools.includes(\"sed\");\n\tconst hasRead = tools.includes(\"read\");\n\n\t// File exploration guidelines\n\tif (hasBash && !hasGrep && !hasFind && !hasLs && !hasRg && !hasFd) {\n\t\taddGuideline(\"Use bash for file operations like ls, rg, find; prefer rg for targeted search when available\");\n\t} else if (hasBash && (hasGrep || hasFind || hasLs || hasRg || hasFd)) {\n\t\taddGuideline(\"Prefer grep/find/ls/rg/fd tools over bash for codebase exploration (faster and less noisy)\");\n\t}\n\n\tif (hasAstGrep || hasComby) {\n\t\taddGuideline(\"Use ast_grep/comby for syntax-aware structural queries before falling back to broad regex\");\n\t}\n\n\tif (hasComby) {\n\t\taddGuideline(\"Use comby to preview structural rewrite matches first, then apply final changes via edit/write\");\n\t}\n\n\tif (hasJq || hasYq) {\n\t\taddGuideline(\"Prefer jq/yq over ad-hoc shell parsing when extracting or transforming JSON/YAML/TOML\");\n\t}\n\n\tif (hasSemgrep) {\n\t\taddGuideline(\"Use semgrep for rule-based risk scans and structural security checks when relevant\");\n\t}\n\n\tif (hasSed) {\n\t\taddGuideline(\"Use sed for preview/extraction workflows only; perform final file edits with edit/write\");\n\t}\n\n\t// Read before edit guideline\n\tif (hasRead && hasEdit) {\n\t\taddGuideline(\"Use read to examine files before editing. You must use this tool instead of cat or sed.\");\n\t}\n\n\t// Edit guideline\n\tif (hasEdit) {\n\t\taddGuideline(\"Use edit for precise changes (old text must match exactly)\");\n\t}\n\n\t// Write guideline\n\tif (hasWrite) {\n\t\taddGuideline(\"Use write only for new files or complete rewrites\");\n\t}\n\n\t// Output guideline (only when actually writing or executing)\n\tif (hasEdit || hasWrite) {\n\t\taddGuideline(\n\t\t\t\"When summarizing your actions, output plain text directly - do NOT use cat or bash to display what you did\",\n\t\t);\n\t}\n\n\taddGuideline(\"Inspect the relevant files before editing and keep exploration bounded to the task\");\n\taddGuideline(\"Make reasonable assumptions and continue unless a risky ambiguity blocks the work\");\n\taddGuideline(\"Classify requests as simple vs complex: execute simple work immediately, use a step plan for complex work\");\n\taddGuideline(\"For complex work, publish a short step plan before edits and keep step statuses current while executing\");\n\taddGuideline(\"If a meaningful architecture or product fork changes implementation, ask a concise clarification before editing\");\n\taddGuideline(\"After changes, run the smallest relevant verification and report the concrete result\");\n\taddGuideline(\"Do not claim success without evidence; if you could not verify, say so explicitly\");\n\taddGuideline(\"Complete the requested task end-to-end when possible instead of stopping at analysis\");\n\taddGuideline(\"For code review requests, lead with findings and risks before summaries\");\n\n\tfor (const guideline of promptGuidelines ?? []) {\n\t\tconst normalized = guideline.trim();\n\t\tif (normalized.length > 0) {\n\t\t\taddGuideline(normalized);\n\t\t}\n\t}\n\n\t// Always include these\n\taddGuideline(\"Be concise in your responses\");\n\taddGuideline(\"Show file paths clearly when working with files\");\n\n\tconst guidelines = guidelinesList.map((g) => `- ${g}`).join(\"\\n\");\n\n\tlet prompt = `You are a professional software engineering agent operating inside iosm-cli. Help users inspect systems, change code, run commands, maintain project artifacts when needed, and explain results clearly.\n\nAvailable tools:\n${toolsList}\n\nIn addition to the tools above, you may have access to other custom tools depending on the project.\n\nGuidelines:\n${guidelines}\n\nOperating defaults:\n- Summarize work in standard engineering language first: what you inspected, what you changed, what you verified, and any remaining risk or blocker.\n- Do NOT start by reading documentation unless the user asks for documentation help, asks about harness internals, or implementation is blocked without it.\n- Start implementation turns with a quick repository scan of the files most likely to matter before proposing or editing.\n- Prefer targeted reads and searches over broad dumps; keep command output bounded and focused.\n- For complex tasks, include a machine-readable plan block before edits and update it when statuses change:\n  <task_plan complexity=\"complex\">\n  - [in_progress] Current step\n  - [pending] Next step\n  </task_plan>\n- Skip plan blocks for simple one-shot tasks.\n- When a material architecture fork exists, pause and ask one concise clarification (or use ask_user when available) before implementation.\n- Treat verification as mandatory after edits: tests, type checks, linters, or a precise explanation of why verification was not possible.\n- For complex requests, execute plan steps in order, close each step explicitly, and finish the full plan unless blocked.\n- If the user explicitly asks for subagents/agents orchestration, you MUST use the task tool rather than doing all work in the main agent.\n- For explicit subagent/orchestration requests, execute at least one task tool call before giving a final prose-only answer.\n- Do not expose internal orchestration scaffolding to the user (for example: [ORCHESTRATION_DIRECTIVE], pseudo tool-call JSON, or raw task arguments).\n- When invoking tools, call them directly without preambles like \"I will now call tool X\"; only report outcomes that matter to the user.\n- Respect orchestration constraints from the user exactly: count, parallel vs sequential execution, per-agent profile, and per-agent working directory (cwd) when provided.\n- For explicit parallel orchestration requests, issue multiple independent task tool calls to match the requested agent count; do not collapse to a single subagent unless the user asks for one.\n- For explicit parallel orchestration requests, emit independent task calls in a single assistant turn whenever possible so they can be launched together.\n- Runtime note: when parallel orchestration is requested, emit independent task calls in one assistant turn so they can run concurrently; avoid background mode unless the user explicitly asks for detached async runs.\n- If orchestration constraints are ambiguous or conflict, ask one concise clarification (or use ask_user when available) before launching subagents.\n- When the user provides an <orchestrate ...>...</orchestrate> block, treat it as an execution contract and follow its mode/agents/profile/cwd assignments strictly.\n- When orchestration assignments include run_id/task_id/lock_key or depends_on, enforce them in task calls (run_id/task_id for team tracking, lock_key for serialization domains, depends_on for ordering).\n- For write-heavy parallel orchestration, prefer isolation=worktree to reduce cross-agent interference when the repository is git-backed.\n- If the user message includes @<custom-agent-name>, treat it as an explicit agent selection and call task with agent set to that custom agent name.\n\niosm-cli reference docs (use when needed):\n- Main documentation: ${readmePath}\n- Additional docs: ${docsPath}\n- Examples: ${examplesPath} (extensions, custom tools, SDK)\n- When asked about: extensions (docs/extensions.md, examples/extensions/), themes (docs/themes.md), skills (docs/skills.md), prompt templates (docs/prompt-templates.md), TUI components (docs/tui.md), keybindings (docs/keybindings.md), SDK integrations (docs/sdk.md), custom providers (docs/custom-provider.md), adding models (docs/models.md), package composition (docs/packages.md)\n- When working on harness internals, read the relevant docs/examples before implementing`;\n\n\tif (appendSection) {\n\t\tprompt += appendSection;\n\t}\n\n\t// Append project context files\n\tif (contextFiles.length > 0) {\n\t\tprompt += \"\\n\\n# Project Context\\n\\n\";\n\t\tprompt += \"Project-specific instructions and guidelines:\\n\\n\";\n\t\tfor (const { path: filePath, content } of contextFiles) {\n\t\t\tprompt += `## ${filePath}\\n\\n${content}\\n\\n`;\n\t\t}\n\t}\n\n\t// Append skills section (only if read tool is available)\n\tif (hasRead && skills.length > 0) {\n\t\tprompt += formatSkillsForPrompt(skills);\n\t}\n\n\t// Add date/time and working directory last\n\tprompt += `\\nCurrent date and time: ${dateTime}`;\n\tprompt += `\\nCurrent working directory: ${resolvedCwd}`;\n\n\treturn prompt;\n}\n"]}
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* System prompt construction and project context loading\n */\n\nimport { getDocsPath, getExamplesPath, getReadmePath } from \"../config.js\";\nimport { formatSkillsForPrompt, type Skill } from \"./skills.js\";\n\n/** Tool descriptions for system prompt */\nconst toolDescriptions: Record<string, string> = {\n\tread: \"Read file contents\",\n\tbash: \"Execute bash commands (ls, grep, find, etc.)\",\n\tedit: \"Make surgical edits to files (find exact text and replace)\",\n\twrite: \"Create or overwrite files\",\n\tgrep: \"Search file contents for patterns (respects .gitignore)\",\n\tfind: \"Find files by glob pattern (respects .gitignore)\",\n\tls: \"List directory contents\",\n\trg: \"Run ripgrep directly for advanced regex search (prefer explicit path args, e.g. -n pattern .)\",\n\tfd: \"Run fd directly for fast file discovery\",\n\tast_grep:\n\t\t\"Run ast-grep for AST/syntax-aware structural code search (prefer run --pattern; retry with scan/-p on older versions)\",\n\tcomby:\n\t\t\"Run comby for structural pattern search/rewrite previews (prefer explicit -matcher; no in-place edits)\",\n\tjq: \"Run jq for JSON querying/transformation\",\n\tyq: \"Run yq for YAML/JSON/TOML querying/transformation\",\n\tsemgrep: \"Run semgrep for structural/static security checks\",\n\tsed: \"Run sed for stream editing/extraction previews (no in-place edits)\",\n\tsemantic_search:\n\t\t\"Semantic embeddings search over the project index (actions: status, index, rebuild, query)\",\n\ttask: \"Run a specialized subagent (supports profile, cwd, lock_key for optional write serialization, run_id/task_id, model override, background mode for detached runs, and agent=<custom name from .iosm/agents>)\",\n};\n\nexport interface BuildSystemPromptOptions {\n\t/** Custom system prompt (replaces default). */\n\tcustomPrompt?: string;\n\t/** Tools to include in prompt. Default: [read, bash, edit, write] */\n\tselectedTools?: string[];\n\t/** Optional one-line tool snippets keyed by tool name. */\n\ttoolSnippets?: Record<string, string>;\n\t/** Additional guideline bullets appended to the default system prompt guidelines. */\n\tpromptGuidelines?: string[];\n\t/** Text to append to system prompt. */\n\tappendSystemPrompt?: string;\n\t/** Working directory. Default: process.cwd() */\n\tcwd?: string;\n\t/** Pre-loaded context files. */\n\tcontextFiles?: Array<{ path: string; content: string }>;\n\t/** Pre-loaded skills. */\n\tskills?: Skill[];\n}\n\n/** Build the system prompt with tools, guidelines, and context */\nexport function buildSystemPrompt(options: BuildSystemPromptOptions = {}): string {\n\tconst {\n\t\tcustomPrompt,\n\t\tselectedTools,\n\t\ttoolSnippets,\n\t\tpromptGuidelines,\n\t\tappendSystemPrompt,\n\t\tcwd,\n\t\tcontextFiles: providedContextFiles,\n\t\tskills: providedSkills,\n\t} = options;\n\tconst resolvedCwd = cwd ?? process.cwd();\n\n\tconst now = new Date();\n\tconst dateTime = now.toLocaleString(\"en-US\", {\n\t\tweekday: \"long\",\n\t\tyear: \"numeric\",\n\t\tmonth: \"long\",\n\t\tday: \"numeric\",\n\t\thour: \"2-digit\",\n\t\tminute: \"2-digit\",\n\t\tsecond: \"2-digit\",\n\t\ttimeZoneName: \"short\",\n\t});\n\n\tconst appendSection = appendSystemPrompt ? `\\n\\n${appendSystemPrompt}` : \"\";\n\n\tconst contextFiles = providedContextFiles ?? [];\n\tconst skills = providedSkills ?? [];\n\n\tif (customPrompt) {\n\t\tlet prompt = customPrompt;\n\n\t\tif (appendSection) {\n\t\t\tprompt += appendSection;\n\t\t}\n\n\t\t// Append project context files\n\t\tif (contextFiles.length > 0) {\n\t\t\tprompt += \"\\n\\n# Project Context\\n\\n\";\n\t\t\tprompt += \"Project-specific instructions and guidelines:\\n\\n\";\n\t\t\tfor (const { path: filePath, content } of contextFiles) {\n\t\t\t\tprompt += `## ${filePath}\\n\\n${content}\\n\\n`;\n\t\t\t}\n\t\t}\n\n\t\t// Append skills section (only if read tool is available)\n\t\tconst customPromptHasRead = !selectedTools || selectedTools.includes(\"read\");\n\t\tif (customPromptHasRead && skills.length > 0) {\n\t\t\tprompt += formatSkillsForPrompt(skills);\n\t\t}\n\n\t\t// Add date/time and working directory last\n\t\tprompt += `\\nCurrent date and time: ${dateTime}`;\n\t\tprompt += `\\nCurrent working directory: ${resolvedCwd}`;\n\n\t\treturn prompt;\n\t}\n\n\t// Get absolute paths to documentation and examples\n\tconst readmePath = getReadmePath();\n\tconst docsPath = getDocsPath();\n\tconst examplesPath = getExamplesPath();\n\n\t// Build tools list based on selected tools.\n\t// Built-ins use toolDescriptions. Custom tools can provide one-line snippets.\n\tconst tools = selectedTools || [\"read\", \"bash\", \"edit\", \"write\"];\n\tconst toolsList =\n\t\ttools.length > 0\n\t\t\t? tools\n\t\t\t\t\t.map((name) => {\n\t\t\t\t\t\tconst snippet = toolSnippets?.[name] ?? toolDescriptions[name] ?? name;\n\t\t\t\t\t\treturn `- ${name}: ${snippet}`;\n\t\t\t\t\t})\n\t\t\t\t\t.join(\"\\n\")\n\t\t\t: \"(none)\";\n\n\t// Build guidelines based on which tools are actually available\n\tconst guidelinesList: string[] = [];\n\tconst guidelinesSet = new Set<string>();\n\tconst addGuideline = (guideline: string): void => {\n\t\tif (guidelinesSet.has(guideline)) {\n\t\t\treturn;\n\t\t}\n\t\tguidelinesSet.add(guideline);\n\t\tguidelinesList.push(guideline);\n\t};\n\n\tconst hasBash = tools.includes(\"bash\");\n\tconst hasEdit = tools.includes(\"edit\");\n\tconst hasWrite = tools.includes(\"write\");\n\tconst hasGrep = tools.includes(\"grep\");\n\tconst hasFind = tools.includes(\"find\");\n\tconst hasLs = tools.includes(\"ls\");\n\tconst hasRg = tools.includes(\"rg\");\n\tconst hasFd = tools.includes(\"fd\");\n\tconst hasAstGrep = tools.includes(\"ast_grep\");\n\tconst hasComby = tools.includes(\"comby\");\n\tconst hasJq = tools.includes(\"jq\");\n\tconst hasYq = tools.includes(\"yq\");\n\tconst hasSemgrep = tools.includes(\"semgrep\");\n\tconst hasSed = tools.includes(\"sed\");\n\tconst hasSemanticSearch = tools.includes(\"semantic_search\");\n\tconst hasRead = tools.includes(\"read\");\n\n\t// File exploration guidelines\n\tif (hasBash && !hasGrep && !hasFind && !hasLs && !hasRg && !hasFd) {\n\t\taddGuideline(\"Use bash for file operations like ls, rg, find; prefer rg for targeted search when available\");\n\t} else if (hasBash && (hasGrep || hasFind || hasLs || hasRg || hasFd)) {\n\t\taddGuideline(\"Prefer grep/find/ls/rg/fd tools over bash for codebase exploration (faster and less noisy)\");\n\t}\n\n\tif (hasRg || hasFd || hasAstGrep || hasComby || hasJq || hasYq || hasSemgrep || hasSed || hasSemanticSearch) {\n\t\taddGuideline(\n\t\t\t\"Route work to specialized tools first: rg/fd (search/discovery), semantic_search (concept-level retrieval), ast_grep/comby (structural code queries), jq/yq (data/config transforms), semgrep (risk scans), sed (stream extraction)\",\n\t\t);\n\t}\n\n\tif (hasAstGrep || hasComby) {\n\t\taddGuideline(\"Use ast_grep/comby for syntax-aware structural queries before falling back to broad regex\");\n\t}\n\n\tif (hasComby) {\n\t\taddGuideline(\"Use comby to preview structural rewrite matches first, then apply final changes via edit/write\");\n\t}\n\n\tif (hasJq || hasYq) {\n\t\taddGuideline(\"Prefer jq/yq over ad-hoc shell parsing when extracting or transforming JSON/YAML/TOML\");\n\t}\n\n\tif (hasSemgrep) {\n\t\taddGuideline(\"Use semgrep for rule-based risk scans and structural security checks when relevant\");\n\t}\n\n\tif (hasSed) {\n\t\taddGuideline(\"Use sed for preview/extraction workflows only; perform final file edits with edit/write\");\n\t}\n\n\tif (hasSemanticSearch) {\n\t\taddGuideline(\n\t\t\t\"Use semantic_search for intent/meaning queries that are hard to express with regex; use rg/ast_grep for exact symbol and syntax matches\",\n\t\t);\n\t\taddGuideline(\n\t\t\t\"If semantic_search reports stale/missing index, run semantic_search status and then semantic_search index (or rebuild when required) before semantic queries\",\n\t\t);\n\t}\n\n\tif (hasRg || hasAstGrep || hasComby) {\n\t\taddGuideline(\n\t\t\t\"For rg/ast_grep/comby, pass explicit target paths to avoid cwd ambiguity; if syntax errors occur (especially ast_grep), retry once with version-compatible command forms before concluding no matches\",\n\t\t);\n\t}\n\n\tif (\n\t\thasBash &&\n\t\t(hasRg || hasFd || hasAstGrep || hasComby || hasJq || hasYq || hasSemgrep || hasSed || hasSemanticSearch)\n\t) {\n\t\taddGuideline(\n\t\t\t\"If a required CLI tool is missing, install it first when permitted (rg/fd can be auto-managed; others via brew/apt/pipx/npm), then continue with that tool instead of broad bash fallback. For semantic_search, configure provider/index first via /semantic setup.\",\n\t\t);\n\t}\n\n\t// Read before edit guideline\n\tif (hasRead && hasEdit) {\n\t\taddGuideline(\"Use read to examine files before editing. You must use this tool instead of cat or sed.\");\n\t}\n\n\t// Edit guideline\n\tif (hasEdit) {\n\t\taddGuideline(\"Use edit for precise changes (old text must match exactly)\");\n\t}\n\n\t// Write guideline\n\tif (hasWrite) {\n\t\taddGuideline(\"Use write only for new files or complete rewrites\");\n\t}\n\n\t// Output guideline (only when actually writing or executing)\n\tif (hasEdit || hasWrite) {\n\t\taddGuideline(\n\t\t\t\"When summarizing your actions, output plain text directly - do NOT use cat or bash to display what you did\",\n\t\t);\n\t}\n\n\taddGuideline(\"Inspect the relevant files before editing and keep exploration bounded to the task\");\n\taddGuideline(\"Make reasonable assumptions and continue unless a risky ambiguity blocks the work\");\n\taddGuideline(\"Classify requests as simple vs complex: execute simple work immediately, use a step plan for complex work\");\n\taddGuideline(\"For complex work, publish a short step plan before edits and keep step statuses current while executing\");\n\taddGuideline(\"If a meaningful architecture or product fork changes implementation, ask a concise clarification before editing\");\n\taddGuideline(\"After changes, run the smallest relevant verification and report the concrete result\");\n\taddGuideline(\"Do not claim success without evidence; if you could not verify, say so explicitly\");\n\taddGuideline(\"Complete the requested task end-to-end when possible instead of stopping at analysis\");\n\taddGuideline(\"For code review requests, lead with findings and risks before summaries\");\n\n\tfor (const guideline of promptGuidelines ?? []) {\n\t\tconst normalized = guideline.trim();\n\t\tif (normalized.length > 0) {\n\t\t\taddGuideline(normalized);\n\t\t}\n\t}\n\n\t// Always include these\n\taddGuideline(\"Be concise in your responses\");\n\taddGuideline(\"Show file paths clearly when working with files\");\n\n\tconst guidelines = guidelinesList.map((g) => `- ${g}`).join(\"\\n\");\n\n\tlet prompt = `You are a professional software engineering agent operating inside iosm-cli. Help users inspect systems, change code, run commands, maintain project artifacts when needed, and explain results clearly.\n\nAvailable tools:\n${toolsList}\n\nIn addition to the tools above, you may have access to other custom tools depending on the project.\n\nGuidelines:\n${guidelines}\n\nOperating defaults:\n- Summarize work in standard engineering language first: what you inspected, what you changed, what you verified, and any remaining risk or blocker.\n- Do NOT start by reading documentation unless the user asks for documentation help, asks about harness internals, or implementation is blocked without it.\n- Start implementation turns with a quick repository scan of the files most likely to matter before proposing or editing.\n- Prefer targeted reads and searches over broad dumps; keep command output bounded and focused.\n- For complex tasks, include a machine-readable plan block before edits and update it when statuses change:\n  <task_plan complexity=\"complex\">\n  - [in_progress] Current step\n  - [pending] Next step\n  </task_plan>\n- Skip plan blocks for simple one-shot tasks.\n- When a material architecture fork exists, pause and ask one concise clarification (or use ask_user when available) before implementation.\n- Treat verification as mandatory after edits: tests, type checks, linters, or a precise explanation of why verification was not possible.\n- For complex requests, execute plan steps in order, close each step explicitly, and finish the full plan unless blocked.\n- If the user explicitly asks for subagents/agents orchestration, you MUST use the task tool rather than doing all work in the main agent.\n- For explicit subagent/orchestration requests, execute at least one task tool call before giving a final prose-only answer.\n- Do not expose internal orchestration scaffolding to the user (for example: [ORCHESTRATION_DIRECTIVE], pseudo tool-call JSON, or raw task arguments).\n- When invoking tools, call them directly without preambles like \"I will now call tool X\"; only report outcomes that matter to the user.\n- Respect orchestration constraints from the user exactly: count, parallel vs sequential execution, per-agent profile, and per-agent working directory (cwd) when provided.\n- For explicit parallel orchestration requests, issue multiple independent task tool calls to match the requested agent count; do not collapse to a single subagent unless the user asks for one.\n- For explicit parallel orchestration requests, emit independent task calls in a single assistant turn whenever possible so they can be launched together.\n- Runtime note: when parallel orchestration is requested, emit independent task calls in one assistant turn so they can run concurrently; avoid background mode unless the user explicitly asks for detached async runs.\n- If orchestration constraints are ambiguous or conflict, ask one concise clarification (or use ask_user when available) before launching subagents.\n- When the user provides an <orchestrate ...>...</orchestrate> block, treat it as an execution contract and follow its mode/agents/profile/cwd assignments strictly.\n- When orchestration assignments include run_id/task_id/lock_key or depends_on, enforce them in task calls (run_id/task_id for team tracking, lock_key for serialization domains, depends_on for ordering).\n- For write-heavy parallel orchestration, prefer isolation=worktree to reduce cross-agent interference when the repository is git-backed.\n- If the user message includes @<custom-agent-name>, treat it as an explicit agent selection and call task with agent set to that custom agent name.\n\niosm-cli reference docs (use when needed):\n- Main documentation: ${readmePath}\n- Additional docs: ${docsPath}\n- Examples: ${examplesPath} (extensions, custom tools, SDK)\n- When asked about: extensions (docs/extensions.md, examples/extensions/), themes (docs/themes.md), skills (docs/skills.md), prompt templates (docs/prompt-templates.md), TUI components (docs/tui.md), keybindings (docs/keybindings.md), SDK integrations (docs/sdk.md), custom providers (docs/custom-provider.md), adding models (docs/models.md), package composition (docs/packages.md)\n- When working on harness internals, read the relevant docs/examples before implementing`;\n\n\tif (appendSection) {\n\t\tprompt += appendSection;\n\t}\n\n\t// Append project context files\n\tif (contextFiles.length > 0) {\n\t\tprompt += \"\\n\\n# Project Context\\n\\n\";\n\t\tprompt += \"Project-specific instructions and guidelines:\\n\\n\";\n\t\tfor (const { path: filePath, content } of contextFiles) {\n\t\t\tprompt += `## ${filePath}\\n\\n${content}\\n\\n`;\n\t\t}\n\t}\n\n\t// Append skills section (only if read tool is available)\n\tif (hasRead && skills.length > 0) {\n\t\tprompt += formatSkillsForPrompt(skills);\n\t}\n\n\t// Add date/time and working directory last\n\tprompt += `\\nCurrent date and time: ${dateTime}`;\n\tprompt += `\\nCurrent working directory: ${resolvedCwd}`;\n\n\treturn prompt;\n}\n"]}

package/dist/core/tools/ast-grep.js

@@ -3,7 +3,7 @@ export function createAstGrepTool(cwd) {
     return createExternalCliTool(cwd, {
         name: "ast_grep",
         label: "ast-grep",
-        description: "Run ast-grep (sg) for syntax-aware code queries. Pass CLI arguments directly (for example: [\"scan\",\"--pattern\",\"console.log($A)\",\"src\"]).",
+        description: "Run ast-grep (sg) for syntax-aware code queries. Pass CLI args directly. Preferred form: [\"run\",\"--pattern\",\"console.log($A)\",\"--lang\",\"javascript\",\"src\"]. If version syntax differs, retry with scan/-p equivalents.",
         commandCandidates: ["ast-grep", "sg"],
         missingInstallHint: "Install ast-grep (brew install ast-grep or npm i -g @ast-grep/cli).",
     });

package/dist/core/tools/ast-grep.js.map

@@ -1 +1 @@
-{"version":3,"file":"ast-grep.js","sourceRoot":"","sources":["../../../src/core/tools/ast-grep.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,qBAAqB,EAAqB,MAAM,mBAAmB,CAAC;AAI7E,MAAM,UAAU,iBAAiB,CAAC,GAAW;IAC5C,OAAO,qBAAqB,CAAC,GAAG,EAAE;QACjC,IAAI,EAAE,UAAU;QAChB,KAAK,EAAE,UAAU;QACjB,WAAW,EACV,mJAAmJ;QACpJ,iBAAiB,EAAE,CAAC,UAAU,EAAE,IAAI,CAAC;QACrC,kBAAkB,EAAE,qEAAqE;KACzF,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,MAAM,WAAW,GAAG,iBAAiB,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC","sourcesContent":["import type { AgentTool } from \"@mariozechner/pi-agent-core\";\nimport type { Static } from \"@sinclair/typebox\";\nimport { createExternalCliTool, externalCliSchema } from \"./external-cli.js\";\n\nexport type AstGrepToolInput = Static<typeof externalCliSchema>;\n\nexport function createAstGrepTool(cwd: string): AgentTool<typeof externalCliSchema> {\n\treturn createExternalCliTool(cwd, {\n\t\tname: \"ast_grep\",\n\t\tlabel: \"ast-grep\",\n\t\tdescription:\n\t\t\t\"Run ast-grep (sg) for syntax-aware code queries. Pass CLI arguments directly (for example: [\\\"scan\\\",\\\"--pattern\\\",\\\"console.log($A)\\\",\\\"src\\\"]).\",\n\t\tcommandCandidates: [\"ast-grep\", \"sg\"],\n\t\tmissingInstallHint: \"Install ast-grep (brew install ast-grep or npm i -g @ast-grep/cli).\",\n\t});\n}\n\nexport const astGrepTool = createAstGrepTool(process.cwd());\n"]}
+{"version":3,"file":"ast-grep.js","sourceRoot":"","sources":["../../../src/core/tools/ast-grep.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,qBAAqB,EAAqB,MAAM,mBAAmB,CAAC;AAI7E,MAAM,UAAU,iBAAiB,CAAC,GAAW;IAC5C,OAAO,qBAAqB,CAAC,GAAG,EAAE;QACjC,IAAI,EAAE,UAAU;QAChB,KAAK,EAAE,UAAU;QACjB,WAAW,EACV,oOAAoO;QACrO,iBAAiB,EAAE,CAAC,UAAU,EAAE,IAAI,CAAC;QACrC,kBAAkB,EAAE,qEAAqE;KACzF,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,MAAM,WAAW,GAAG,iBAAiB,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC","sourcesContent":["import type { AgentTool } from \"@mariozechner/pi-agent-core\";\nimport type { Static } from \"@sinclair/typebox\";\nimport { createExternalCliTool, externalCliSchema } from \"./external-cli.js\";\n\nexport type AstGrepToolInput = Static<typeof externalCliSchema>;\n\nexport function createAstGrepTool(cwd: string): AgentTool<typeof externalCliSchema> {\n\treturn createExternalCliTool(cwd, {\n\t\tname: \"ast_grep\",\n\t\tlabel: \"ast-grep\",\n\t\tdescription:\n\t\t\t\"Run ast-grep (sg) for syntax-aware code queries. Pass CLI args directly. Preferred form: [\\\"run\\\",\\\"--pattern\\\",\\\"console.log($A)\\\",\\\"--lang\\\",\\\"javascript\\\",\\\"src\\\"]. If version syntax differs, retry with scan/-p equivalents.\",\n\t\tcommandCandidates: [\"ast-grep\", \"sg\"],\n\t\tmissingInstallHint: \"Install ast-grep (brew install ast-grep or npm i -g @ast-grep/cli).\",\n\t});\n}\n\nexport const astGrepTool = createAstGrepTool(process.cwd());\n"]}

package/dist/core/tools/comby.js

@@ -3,7 +3,7 @@ export function createCombyTool(cwd) {
     return createExternalCliTool(cwd, {
         name: "comby",
         label: "comby",
-        description: "Run comby for structural search/rewrite previews. In-place flags are blocked; use edit/write tools for actual file mutations.",
+        description: "Run comby for structural search/rewrite previews. Prefer explicit matcher when language is known (for example: [\"pattern\", \"rewrite\", \"-matcher\", \".python\", \"src\"]). In-place flags are blocked; use edit/write tools for actual file mutations.",
         commandCandidates: ["comby"],
         missingInstallHint: "Install comby (brew install comby).",
         forbiddenArgs: ["-i", "--in-place", "-in-place"],

package/dist/core/tools/comby.js.map

@@ -1 +1 @@
-{"version":3,"file":"comby.js","sourceRoot":"","sources":["../../../src/core/tools/comby.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,qBAAqB,EAAqB,MAAM,mBAAmB,CAAC;AAI7E,MAAM,UAAU,eAAe,CAAC,GAAW;IAC1C,OAAO,qBAAqB,CAAC,GAAG,EAAE;QACjC,IAAI,EAAE,OAAO;QACb,KAAK,EAAE,OAAO;QACd,WAAW,EACV,+HAA+H;QAChI,iBAAiB,EAAE,CAAC,OAAO,CAAC;QAC5B,kBAAkB,EAAE,qCAAqC;QACzD,aAAa,EAAE,CAAC,IAAI,EAAE,YAAY,EAAE,WAAW,CAAC;QAChD,oBAAoB,EAAE,CAAC,KAAK,CAAC;KAC7B,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,MAAM,SAAS,GAAG,eAAe,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC","sourcesContent":["import type { AgentTool } from \"@mariozechner/pi-agent-core\";\nimport type { Static } from \"@sinclair/typebox\";\nimport { createExternalCliTool, externalCliSchema } from \"./external-cli.js\";\n\nexport type CombyToolInput = Static<typeof externalCliSchema>;\n\nexport function createCombyTool(cwd: string): AgentTool<typeof externalCliSchema> {\n\treturn createExternalCliTool(cwd, {\n\t\tname: \"comby\",\n\t\tlabel: \"comby\",\n\t\tdescription:\n\t\t\t\"Run comby for structural search/rewrite previews. In-place flags are blocked; use edit/write tools for actual file mutations.\",\n\t\tcommandCandidates: [\"comby\"],\n\t\tmissingInstallHint: \"Install comby (brew install comby).\",\n\t\tforbiddenArgs: [\"-i\", \"--in-place\", \"-in-place\"],\n\t\tforbiddenArgPrefixes: [\"-i=\"],\n\t});\n}\n\nexport const combyTool = createCombyTool(process.cwd());\n"]}
+{"version":3,"file":"comby.js","sourceRoot":"","sources":["../../../src/core/tools/comby.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,qBAAqB,EAAqB,MAAM,mBAAmB,CAAC;AAI7E,MAAM,UAAU,eAAe,CAAC,GAAW;IAC1C,OAAO,qBAAqB,CAAC,GAAG,EAAE;QACjC,IAAI,EAAE,OAAO;QACb,KAAK,EAAE,OAAO;QACd,WAAW,EACV,6PAA6P;QAC9P,iBAAiB,EAAE,CAAC,OAAO,CAAC;QAC5B,kBAAkB,EAAE,qCAAqC;QACzD,aAAa,EAAE,CAAC,IAAI,EAAE,YAAY,EAAE,WAAW,CAAC;QAChD,oBAAoB,EAAE,CAAC,KAAK,CAAC;KAC7B,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,MAAM,SAAS,GAAG,eAAe,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC","sourcesContent":["import type { AgentTool } from \"@mariozechner/pi-agent-core\";\nimport type { Static } from \"@sinclair/typebox\";\nimport { createExternalCliTool, externalCliSchema } from \"./external-cli.js\";\n\nexport type CombyToolInput = Static<typeof externalCliSchema>;\n\nexport function createCombyTool(cwd: string): AgentTool<typeof externalCliSchema> {\n\treturn createExternalCliTool(cwd, {\n\t\tname: \"comby\",\n\t\tlabel: \"comby\",\n\t\tdescription:\n\t\t\t\"Run comby for structural search/rewrite previews. Prefer explicit matcher when language is known (for example: [\\\"pattern\\\", \\\"rewrite\\\", \\\"-matcher\\\", \\\".python\\\", \\\"src\\\"]). In-place flags are blocked; use edit/write tools for actual file mutations.\",\n\t\tcommandCandidates: [\"comby\"],\n\t\tmissingInstallHint: \"Install comby (brew install comby).\",\n\t\tforbiddenArgs: [\"-i\", \"--in-place\", \"-in-place\"],\n\t\tforbiddenArgPrefixes: [\"-i=\"],\n\t});\n}\n\nexport const combyTool = createCombyTool(process.cwd());\n"]}

package/dist/core/tools/index.d.ts

@@ -12,6 +12,7 @@ export { createReadTool, type ReadOperations, type ReadToolDetails, type ReadToo
 export { createRgTool, type RgToolInput, rgTool, } from "./rg.js";
 export { createSedTool, type SedToolInput, sedTool, } from "./sed.js";
 export { createSemgrepTool, type SemgrepToolInput, semgrepTool, } from "./semgrep.js";
+export { createSemanticSearchTool, type SemanticSearchToolInput, type SemanticSearchToolOptions, semanticSearchTool, } from "./semantic-search.js";
 export { DEFAULT_MAX_BYTES, DEFAULT_MAX_LINES, formatSize, type TruncationOptions, type TruncationResult, truncateHead, truncateLine, truncateTail, } from "./truncate.js";
 export { createWriteTool, type WriteOperations, type WriteToolInput, type WriteToolOptions, writeTool, } from "./write.js";
 export { type ToolPermissionGuard, type ToolPermissionRequest } from "./permissions.js";
@@ -22,6 +23,7 @@ import type { AgentTool } from "@mariozechner/pi-agent-core";
 import { type BashToolOptions } from "./bash.js";
 import { type EditToolOptions } from "./edit.js";
 import { type ReadToolOptions } from "./read.js";
+import { type SemanticSearchToolOptions } from "./semantic-search.js";
 import { type WriteToolOptions } from "./write.js";
 /** Tool type (AgentTool from pi-ai) */
 export type Tool = AgentTool<any>;
@@ -112,6 +114,11 @@ export declare const allTools: {
         stdin: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
         timeout: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
     }>, any>;
+    semantic_search: AgentTool<import("@sinclair/typebox").TObject<{
+        action: import("@sinclair/typebox").TUnion<[import("@sinclair/typebox").TLiteral<"status">, import("@sinclair/typebox").TLiteral<"index">, import("@sinclair/typebox").TLiteral<"rebuild">, import("@sinclair/typebox").TLiteral<"query">]>;
+        query: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
+        top_k: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TNumber>;
+    }>, any>;
     todo_write: AgentTool<import("@sinclair/typebox").TObject<{
         tasks: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TObject<{
             id: import("@sinclair/typebox").TString;
@@ -133,6 +140,8 @@ export interface ToolsOptions {
     edit?: EditToolOptions;
     /** Options for the write tool */
     write?: WriteToolOptions;
+    /** Options for the semantic_search tool */
+    semantic?: SemanticSearchToolOptions;
 }
 /**
  * Create coding tools configured for a specific working directory.

package/dist/core/tools/index.d.ts.map

@@ -1 +1 @@
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package/dist/core/tools/index.js

@@ -12,6 +12,7 @@ export { createReadTool, readTool, } from "./read.js";
 export { createRgTool, rgTool, } from "./rg.js";
 export { createSedTool, sedTool, } from "./sed.js";
 export { createSemgrepTool, semgrepTool, } from "./semgrep.js";
+export { createSemanticSearchTool, semanticSearchTool, } from "./semantic-search.js";
 export { DEFAULT_MAX_BYTES, DEFAULT_MAX_LINES, formatSize, truncateHead, truncateLine, truncateTail, } from "./truncate.js";
 export { createWriteTool, writeTool, } from "./write.js";
 export { createTodoWriteTool, createTodoReadTool, todoWriteTool, todoReadTool, getTaskFilePath, } from "./todo.js";
@@ -30,6 +31,7 @@ import { createReadTool, readTool } from "./read.js";
 import { createRgTool, rgTool } from "./rg.js";
 import { createSedTool, sedTool } from "./sed.js";
 import { createSemgrepTool, semgrepTool } from "./semgrep.js";
+import { createSemanticSearchTool, semanticSearchTool, } from "./semantic-search.js";
 import { createWriteTool, writeTool } from "./write.js";
 import { createYqTool, yqTool } from "./yq.js";
 import { todoWriteTool, todoReadTool } from "./todo.js";
@@ -49,6 +51,7 @@ export const readOnlyTools = [
     yqTool,
     semgrepTool,
     sedTool,
+    semanticSearchTool,
 ];
 // All available tools (using process.cwd())
 export const allTools = {
@@ -67,6 +70,7 @@ export const allTools = {
     yq: yqTool,
     semgrep: semgrepTool,
     sed: sedTool,
+    semantic_search: semanticSearchTool,
     todo_write: todoWriteTool,
     todo_read: todoReadTool,
 };
@@ -98,6 +102,7 @@ export function createReadOnlyTools(cwd, options) {
         createYqTool(cwd),
         createSemgrepTool(cwd),
         createSedTool(cwd),
+        createSemanticSearchTool(cwd, options?.semantic),
     ];
 }
 /**
@@ -120,6 +125,7 @@ export function createAllTools(cwd, options) {
         yq: createYqTool(cwd),
         semgrep: createSemgrepTool(cwd),
         sed: createSedTool(cwd),
+        semantic_search: createSemanticSearchTool(cwd, options?.semantic),
         todo_write: todoWriteTool,
         todo_read: todoReadTool,
     };