iosm-cli 0.1.2 → 0.1.3

package/CHANGELOG.md

@@ -7,8 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+_No unreleased changes._
+
+## [0.1.3] - 2026-03-10
+
 ### Added
 
+- **Semantic search runtime** — Added built-in `semantic_search` tool (`index`, `query`, `status`, `rebuild`), interactive `/semantic` manager, and top-level `iosm semantic` command
+- **Semantic setup UX upgrades** — Added provider model discovery (OpenRouter/Ollama) and setup-flow guidance for optional fields
 - **Search/analysis toolchain expansion** — Added separate built-in tools: `rg`, `fd`, `ast_grep`, `comby`, `jq`, `yq`, `semgrep`, `sed`
 - **Doctor CLI diagnostics for tools** — `/doctor` now reports external CLI toolchain availability (`rg`, `fd`, `ast_grep`, `comby`, `jq`, `yq`, `semgrep`, `sed`) in text and JSON output
 - **CLI entry point** — Standalone `iosm` binary with full argument parsing

package/README.md

@@ -1,10 +1,10 @@
-<h1 align="center">IOSM CLI v0.1.2</h1>
+<h1 align="center">IOSM CLI v0.1.3</h1>
 
 <p align="center">
   <strong>AI Engineering Runtime for Professional Developers</strong>
 </p>
 <p align="center">
-  Interactive coding agent · IOSM methodology · MCP · Checkpoints · Subagent orchestration · Extensions
+  Interactive coding agent · IOSM methodology · MCP · Semantic Search · Checkpoints · Subagent orchestration · Extensions
 </p>
 
 <p align="center">
@@ -27,6 +27,7 @@ It is a runtime for production codebases:
 - a terminal-native coding agent with direct filesystem and shell tooling
 - primary operating profiles: **full** (default) and **iosm** (advanced, methodology-driven engineering cycles)
 - smart orchestration for complex tasks: parallel/sequential agents, dependency ordering, lock coordination, and worktree isolation
+- built-in semantic embeddings search (`semantic_search` tool + `/semantic` + `iosm semantic`)
 - repeatable codebase improvement workflows via **IOSM** (Improve -> Optimize -> Shrink -> Modularize)
 - auditable artifact history for cycles, decisions, and metric evolution across runs
 - operational controls for safe iteration (`/checkpoint`, `/rollback`, `/doctor`, `/memory`)
@@ -133,13 +134,14 @@ Core commands to unlock full runtime value:
 - `/orchestrate` — run parallel/sequential subagents with dependencies, locks, and optional worktrees
 - `/init` + `/iosm` — execute measurable IOSM cycles with artifacts and quality gates
 - `/mcp` — connect external tool ecosystems in interactive UI
+- `/semantic` — configure semantic provider, build/rebuild embeddings index, run meaning-based retrieval
 - `/memory` — persist project facts and constraints across sessions
 
 ## Real-World Example: Agent-Orchestrated IOSM Refactor
 
 ```console
 $ iosm
-IOSM CLI v0.1.2 [full]
+IOSM CLI v0.1.3 [full]
 
 you> Refactor authentication module with parallel agents, then finalize in IOSM mode
 iosm> /orchestrate --parallel --agents 4 \
@@ -257,6 +259,7 @@ Track and resume delegated execution with `/subagent-runs`, `/subagent-resume`,
 | Run IOSM cycle | `/iosm [target-index] [--max-iterations N]` | Execute measurable improve/verify loops with artifact output |
 | Track delegated runs | `/subagent-runs`, `/subagent-resume`, `/team-runs`, `/team-status` | Monitor and resume orchestration pipelines |
 | Manage MCP servers | `/mcp` | Inspect/add/enable external tool servers interactively |
+| Manage semantic search | `/semantic` | Configure provider with auto model discovery (OpenRouter/Ollama), index codebase, query by intent/meaning |
 | Manage memory | `/memory` | Add/edit/remove persistent project facts and constraints |
 | Save/restore state | `/checkpoint` / `/rollback` | Safe experimentation with fast rollback |
 | Diagnose runtime | `/doctor` | Verify model/auth/MCP/resources when behavior is inconsistent |

package/dist/cli/args.d.ts.map

@@ -1 +1 @@
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package/dist/cli/args.js

@@ -184,8 +184,9 @@ ${chalk.bold("Commands:")}
   ${APP_NAME} update [source]          Update installed extensions (skips pinned sources)
   ${APP_NAME} list                     List installed extensions from settings
   ${APP_NAME} mcp <subcommand>         Manage MCP servers and inspect MCP tools
+  ${APP_NAME} semantic <subcommand>    Manage semantic index (status/index/rebuild/query)
   ${APP_NAME} config                   Open TUI to enable/disable package resources
-  ${APP_NAME} <command> --help         Show help for init/cycle/install/remove/update/list/mcp
+  ${APP_NAME} <command> --help         Show help for init/cycle/install/remove/update/list/mcp/semantic
 
 ${chalk.bold("Options:")}
   --provider <name>              Provider name (requires --model)
@@ -204,7 +205,7 @@ ${chalk.bold("Options:")}
                                  Supports globs (anthropic/*, *sonnet*) and fuzzy matching
 	--no-tools                     Disable all built-in tools
 	--tools <tools>                Comma-separated list of tools to enable (default: read,bash,edit,write)
-	                                 Available: read, bash, edit, write, grep, find, ls, rg, fd, ast_grep, comby, jq, yq, semgrep, sed
+	                                 Available: read, bash, edit, write, grep, find, ls, rg, fd, ast_grep, comby, jq, yq, semgrep, sed, semantic_search
   --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh
   --extension, -e <path>         Load an extension file (can be used multiple times)
   --no-extensions, -ne           Disable extension discovery (explicit -e paths still work)
@@ -334,6 +335,7 @@ ${chalk.bold("Available Tools (default: read, bash, edit, write):")}
   yq     - YAML/JSON/TOML query/transform tool
   semgrep - Structural static/security scan tool
   sed    - Stream editing/extraction tool (no in-place edits)
+  semantic_search - Embedding-based semantic search (status/index/rebuild/query)
 `);
 }
 //# sourceMappingURL=args.js.map

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* CLI argument parsing and help display\n */\n\nimport type { ThinkingLevel } from \"@mariozechner/pi-agent-core\";\nimport chalk from \"chalk\";\nimport {\n\tAPP_NAME,\n\tCONFIG_DIR_NAME,\n\tENV_AGENT_DIR,\n\tENV_AI_ANTIGRAVITY_VERSION,\n\tENV_OFFLINE,\n\tENV_PACKAGE_DIR,\n\tENV_SESSION_TRACE,\n\tENV_SESSION_TRACE_DIR,\n\tENV_SHARE_VIEWER_URL,\n} from \"../config.js\";\nimport { allTools, type ToolName } from \"../core/tools/index.js\";\n\nexport type Mode = \"text\" | \"json\" | \"rpc\";\n\nexport interface Args {\n\tprovider?: string;\n\tmodel?: string;\n\tapiKey?: string;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\tthinking?: ThinkingLevel;\n\tcontinue?: boolean;\n\tresume?: boolean;\n\thelp?: boolean;\n\tversion?: boolean;\n\tmode?: Mode;\n\tnoSession?: boolean;\n\tsession?: string;\n\tsessionDir?: string;\n\tmodels?: string[];\n\ttools?: ToolName[];\n\tnoTools?: boolean;\n\textensions?: string[];\n\tnoExtensions?: boolean;\n\tprint?: boolean;\n\texport?: string;\n\tnoSkills?: boolean;\n\tskills?: string[];\n\tpromptTemplates?: string[];\n\tnoPromptTemplates?: boolean;\n\tthemes?: string[];\n\tnoThemes?: boolean;\n\tlistModels?: string | true;\n\toffline?: boolean;\n\tsessionTrace?: boolean;\n\tsessionTraceDir?: string;\n\tverbose?: boolean;\n\t/** Enable plan mode: agent explores read-only then presents plan for approval before executing */\n\tplan?: boolean;\n\t/** Agent profile to use: full | plan | iosm (main) plus advanced/internal profiles */\n\tprofile?: string;\n\tmessages: string[];\n\tfileArgs: string[];\n\t/** Unknown flags (potentially extension flags) - map of flag name to value */\n\tunknownFlags: Map<string, boolean | string>;\n}\n\nconst VALID_THINKING_LEVELS = [\"off\", \"minimal\", \"low\", \"medium\", \"high\", \"xhigh\"] as const;\n\nexport function isValidThinkingLevel(level: string): level is ThinkingLevel {\n\treturn VALID_THINKING_LEVELS.includes(level as ThinkingLevel);\n}\n\nexport function parseArgs(args: string[], extensionFlags?: Map<string, { type: \"boolean\" | \"string\" }>): Args {\n\tconst result: Args = {\n\t\tmessages: [],\n\t\tfileArgs: [],\n\t\tunknownFlags: new Map(),\n\t};\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i];\n\n\t\tif (arg === \"--help\" || arg === \"-h\") {\n\t\t\tresult.help = true;\n\t\t} else if (arg === \"--version\" || arg === \"-v\") {\n\t\t\tresult.version = true;\n\t\t} else if (arg === \"--mode\" && i + 1 < args.length) {\n\t\t\tconst mode = args[++i];\n\t\t\tif (mode === \"text\" || mode === \"json\" || mode === \"rpc\") {\n\t\t\t\tresult.mode = mode;\n\t\t\t}\n\t\t} else if (arg === \"--continue\" || arg === \"-c\") {\n\t\t\tresult.continue = true;\n\t\t} else if (arg === \"--resume\" || arg === \"-r\") {\n\t\t\tresult.resume = true;\n\t\t} else if (arg === \"--provider\" && i + 1 < args.length) {\n\t\t\tresult.provider = args[++i];\n\t\t} else if (arg === \"--model\" && i + 1 < args.length) {\n\t\t\tresult.model = args[++i];\n\t\t} else if (arg === \"--api-key\" && i + 1 < args.length) {\n\t\t\tresult.apiKey = args[++i];\n\t\t} else if (arg === \"--system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.systemPrompt = args[++i];\n\t\t} else if (arg === \"--append-system-prompt\" && i + 1 < args.length) {\n\t\t\tresult.appendSystemPrompt = args[++i];\n\t\t} else if (arg === \"--no-session\") {\n\t\t\tresult.noSession = true;\n\t\t} else if (arg === \"--session\" && i + 1 < args.length) {\n\t\t\tresult.session = args[++i];\n\t\t} else if (arg === \"--session-dir\" && i + 1 < args.length) {\n\t\t\tresult.sessionDir = args[++i];\n\t\t} else if (arg === \"--models\" && i + 1 < args.length) {\n\t\t\tresult.models = args[++i].split(\",\").map((s) => s.trim());\n\t\t} else if (arg === \"--no-tools\") {\n\t\t\tresult.noTools = true;\n\t\t} else if (arg === \"--tools\" && i + 1 < args.length) {\n\t\t\tconst toolNames = args[++i].split(\",\").map((s) => s.trim());\n\t\t\tconst validTools: ToolName[] = [];\n\t\t\tfor (const name of toolNames) {\n\t\t\t\tif (name in allTools) {\n\t\t\t\t\tvalidTools.push(name as ToolName);\n\t\t\t\t} else {\n\t\t\t\t\tconsole.error(\n\t\t\t\t\t\tchalk.yellow(`Warning: Unknown tool \"${name}\". Valid tools: ${Object.keys(allTools).join(\", \")}`),\n\t\t\t\t\t);\n\t\t\t\t}\n\t\t\t}\n\t\t\tresult.tools = validTools;\n\t\t} else if (arg === \"--thinking\" && i + 1 < args.length) {\n\t\t\tconst level = args[++i];\n\t\t\tif (isValidThinkingLevel(level)) {\n\t\t\t\tresult.thinking = level;\n\t\t\t} else {\n\t\t\t\tconsole.error(\n\t\t\t\t\tchalk.yellow(\n\t\t\t\t\t\t`Warning: Invalid thinking level \"${level}\". Valid values: ${VALID_THINKING_LEVELS.join(\", \")}`,\n\t\t\t\t\t),\n\t\t\t\t);\n\t\t\t}\n\t\t} else if (arg === \"--print\" || arg === \"-p\") {\n\t\t\tresult.print = true;\n\t\t} else if (arg === \"--export\" && i + 1 < args.length) {\n\t\t\tresult.export = args[++i];\n\t\t} else if ((arg === \"--extension\" || arg === \"-e\") && i + 1 < args.length) {\n\t\t\tresult.extensions = result.extensions ?? [];\n\t\t\tresult.extensions.push(args[++i]);\n\t\t} else if (arg === \"--no-extensions\" || arg === \"-ne\") {\n\t\t\tresult.noExtensions = true;\n\t\t} else if (arg === \"--skill\" && i + 1 < args.length) {\n\t\t\tresult.skills = result.skills ?? [];\n\t\t\tresult.skills.push(args[++i]);\n\t\t} else if (arg === \"--prompt-template\" && i + 1 < args.length) {\n\t\t\tresult.promptTemplates = result.promptTemplates ?? [];\n\t\t\tresult.promptTemplates.push(args[++i]);\n\t\t} else if (arg === \"--theme\" && i + 1 < args.length) {\n\t\t\tresult.themes = result.themes ?? [];\n\t\t\tresult.themes.push(args[++i]);\n\t\t} else if (arg === \"--no-skills\" || arg === \"-ns\") {\n\t\t\tresult.noSkills = true;\n\t\t} else if (arg === \"--no-prompt-templates\" || arg === \"-np\") {\n\t\t\tresult.noPromptTemplates = true;\n\t\t} else if (arg === \"--no-themes\") {\n\t\t\tresult.noThemes = true;\n\t\t} else if (arg === \"--list-models\") {\n\t\t\t// Check if next arg is a search pattern (not a flag or file arg)\n\t\t\tif (i + 1 < args.length && !args[i + 1].startsWith(\"-\") && !args[i + 1].startsWith(\"@\")) {\n\t\t\t\tresult.listModels = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.listModels = true;\n\t\t\t}\n\t\t} else if (arg === \"--verbose\") {\n\t\t\tresult.verbose = true;\n\t\t} else if (arg === \"--plan\") {\n\t\t\tresult.plan = true;\n\t\t} else if (arg === \"--profile\" && i + 1 < args.length) {\n\t\t\tresult.profile = args[++i];\n\t\t} else if (arg === \"--offline\") {\n\t\t\tresult.offline = true;\n\t\t} else if (arg === \"--session-trace\") {\n\t\t\tresult.sessionTrace = true;\n\t\t} else if (arg === \"--session-trace-dir\" && i + 1 < args.length) {\n\t\t\tresult.sessionTraceDir = args[++i];\n\t\t} else if (arg.startsWith(\"@\")) {\n\t\t\tresult.fileArgs.push(arg.slice(1)); // Remove @ prefix\n\t\t} else if (arg.startsWith(\"--\") && extensionFlags) {\n\t\t\t// Check if it's an extension-registered flag\n\t\t\tconst flagName = arg.slice(2);\n\t\t\tconst extFlag = extensionFlags.get(flagName);\n\t\t\tif (extFlag) {\n\t\t\t\tif (extFlag.type === \"boolean\") {\n\t\t\t\t\tresult.unknownFlags.set(flagName, true);\n\t\t\t\t} else if (extFlag.type === \"string\" && i + 1 < args.length) {\n\t\t\t\t\tresult.unknownFlags.set(flagName, args[++i]);\n\t\t\t\t}\n\t\t\t}\n\t\t\t// Unknown flags without extensionFlags are silently ignored (first pass)\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tresult.messages.push(arg);\n\t\t}\n\t}\n\n\treturn result;\n}\n\nexport function printHelp(): void {\n\tconsole.log(`${chalk.bold(APP_NAME)} - IOSM agent CLI with read, bash, edit, write tools\n\n${chalk.bold(\"Usage:\")}\n  ${APP_NAME} [options] [@files...] [messages...]\n\n${chalk.bold(\"Commands:\")}\n  ${APP_NAME} init [path] [--force]   Initialize IOSM, analyze project, run verification, and create IOSM.md playbook\n  ${APP_NAME} cycle <subcommand>      Manage IOSM cycle scaffolds, reports, and status\n  ${APP_NAME} install <source> [-l]    Install extension source and add to settings\n  ${APP_NAME} remove <source> [-l]     Remove extension source from settings\n  ${APP_NAME} update [source]          Update installed extensions (skips pinned sources)\n  ${APP_NAME} list                     List installed extensions from settings\n  ${APP_NAME} mcp <subcommand>         Manage MCP servers and inspect MCP tools\n  ${APP_NAME} config                   Open TUI to enable/disable package resources\n  ${APP_NAME} <command> --help         Show help for init/cycle/install/remove/update/list/mcp\n\n${chalk.bold(\"Options:\")}\n  --provider <name>              Provider name (requires --model)\n  --model <pattern>              Model pattern or ID (supports \"provider/id\" and optional \":<thinking>\")\n  --api-key <key>                API key (defaults to env vars)\n  --system-prompt <text>         System prompt (default: IOSM agent prompt)\n  --append-system-prompt <text>  Append text or file contents to the system prompt\n  --mode <mode>                  Output mode: text (default), json, or rpc\n  --print, -p                    Non-interactive mode: process prompt and exit\n  --continue, -c                 Continue previous session\n  --resume, -r                   Select a session to resume\n  --session <path>               Use specific session file\n  --session-dir <dir>            Directory for session storage and lookup\n  --no-session                   Don't save session (ephemeral)\n  --models <patterns>            Comma-separated model patterns for Ctrl+P cycling\n                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching\n\t--no-tools                     Disable all built-in tools\n\t--tools <tools>                Comma-separated list of tools to enable (default: read,bash,edit,write)\n\t                                 Available: read, bash, edit, write, grep, find, ls, rg, fd, ast_grep, comby, jq, yq, semgrep, sed\n  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh\n  --extension, -e <path>         Load an extension file (can be used multiple times)\n  --no-extensions, -ne           Disable extension discovery (explicit -e paths still work)\n  --skill <path>                 Load a skill file or directory (can be used multiple times)\n  --no-skills, -ns               Disable skills discovery and loading\n  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)\n  --no-prompt-templates, -np     Disable prompt template discovery and loading\n  --theme <path>                 Load a theme file or directory (can be used multiple times)\n  --no-themes                    Disable theme discovery and loading\n  --export <file>                Export session file to HTML and exit\n  --list-models [search]         List available models (with optional fuzzy search)\n  --verbose                      Force verbose startup (overrides quietStartup setting)\n  --plan                         Plan mode: explore read-only, show plan, wait for approval before executing\n  --profile <name>               Agent profile: full, plan, iosm (main modes) + explore, iosm_analyst, iosm_verifier, cycle_planner\n  --offline                      Disable startup network operations (same as ${ENV_OFFLINE}=1)\n  --session-trace                Enable full session trace JSONL logging\n  --session-trace-dir <dir>      Directory for session trace logs (default: ~/${CONFIG_DIR_NAME}/agent/session-traces)\n  --help, -h                     Show this help\n  --version, -v                  Show version number\n\nExtensions can register additional flags (e.g., --plan from plan-mode extension).\n\n${chalk.bold(\"Examples:\")}\n  # Interactive mode\n  ${APP_NAME}\n\n  # Initialize IOSM config and artifact scaffold\n  ${APP_NAME} init\n\n  # Create a cycle scaffold\n  ${APP_NAME} cycle plan \"reduce checkout latency\"\n\n  # Show the latest cycle report\n  ${APP_NAME} cycle report\n\n  # Show cycle completeness and gate status\n  ${APP_NAME} cycle status\n\n  # Interactive mode with initial prompt\n  ${APP_NAME} \"List all .ts files in src/\"\n\n  # Include files in initial message\n  ${APP_NAME} @prompt.md @image.png \"What color is the sky?\"\n\n  # Non-interactive mode (process and exit)\n  ${APP_NAME} -p \"List all .ts files in src/\"\n\n  # Multiple messages (interactive)\n  ${APP_NAME} \"Read package.json\" \"What dependencies do we have?\"\n\n  # Continue previous session\n  ${APP_NAME} --continue \"What did we discuss?\"\n\n  # Use different model\n  ${APP_NAME} --provider openai --model gpt-4o-mini \"Help me refactor this code\"\n\n  # Use model with provider prefix (no --provider needed)\n  ${APP_NAME} --model openai/gpt-4o \"Help me refactor this code\"\n\n  # Use model with thinking level shorthand\n  ${APP_NAME} --model sonnet:high \"Solve this complex problem\"\n\n  # Limit model cycling to specific models\n  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o\n\n  # Limit to a specific provider with glob pattern\n  ${APP_NAME} --models \"github-copilot/*\"\n\n  # Cycle models with fixed thinking levels\n  ${APP_NAME} --models sonnet:high,haiku:low\n\n  # Start with a specific thinking level\n  ${APP_NAME} --thinking high \"Solve this complex problem\"\n\n  # Read-only mode (no file modifications possible)\n  ${APP_NAME} --tools read,grep,find,ls -p \"Review the code in src/\"\n\n  # Export a session file to HTML\n  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl\n  ${APP_NAME} --export session.jsonl output.html\n\n${chalk.bold(\"Environment Variables:\")}\n  ANTHROPIC_API_KEY                - Anthropic Claude API key\n  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)\n  OPENAI_API_KEY                   - OpenAI GPT API key\n  AZURE_OPENAI_API_KEY             - Azure OpenAI API key\n  AZURE_OPENAI_BASE_URL            - Azure OpenAI base URL (https://{resource}.openai.azure.com/openai/v1)\n  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)\n  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)\n  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)\n  GEMINI_API_KEY                   - Google Gemini API key\n  GROQ_API_KEY                     - Groq API key\n  CEREBRAS_API_KEY                 - Cerebras API key\n  XAI_API_KEY                      - xAI Grok API key\n  OPENROUTER_API_KEY               - OpenRouter API key\n  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key\n  ZAI_API_KEY                      - ZAI API key\n  MISTRAL_API_KEY                  - Mistral API key\n  MINIMAX_API_KEY                  - MiniMax API key\n  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key\n  KIMI_API_KEY                     - Kimi For Coding API key\n  AWS_PROFILE                      - AWS profile for Amazon Bedrock\n  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock\n  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock\n  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)\n  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)\n  ${ENV_AGENT_DIR.padEnd(32)} - Session storage directory (default: ~/${CONFIG_DIR_NAME}/agent)\n  ${ENV_PACKAGE_DIR.padEnd(32)} - Override package directory (for Nix/Guix store paths)\n  ${ENV_OFFLINE.padEnd(32)} - Disable startup network operations when set to 1/true/yes\n  ${ENV_SESSION_TRACE.padEnd(32)} - Enable full session trace logging when set to 1/true/yes\n  ${ENV_SESSION_TRACE_DIR.padEnd(32)} - Session trace directory override\n  ${ENV_SHARE_VIEWER_URL.padEnd(32)} - Base URL for /share command (default: https://iosm.dev/session/)\n  ${ENV_AI_ANTIGRAVITY_VERSION.padEnd(32)} - Override Antigravity User-Agent version (e.g., 1.23.0)\n${chalk.bold(\"Available Tools (default: read, bash, edit, write):\")}\n  read   - Read file contents\n  bash   - Execute bash commands\n  edit   - Edit files with find/replace\n  write  - Write files (creates/overwrites)\n  grep   - Search file contents (read-only, off by default)\n  find   - Find files by glob pattern (read-only, off by default)\n  ls     - List directory contents (read-only, off by default)\n  rg     - Direct ripgrep tool (advanced regex search)\n  fd     - Direct fd tool (fast file discovery)\n  ast_grep - AST/syntax-aware structural code search\n  comby  - Structural match/rewrite preview tool (no in-place edits)\n  jq     - JSON query/transform tool\n  yq     - YAML/JSON/TOML query/transform tool\n  semgrep - Structural static/security scan tool\n  sed    - Stream editing/extraction tool (no in-place edits)\n`);\n}\n"]}
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string;\n\tnoSkills?: boolean;\n\tskills?: string[];\n\tpromptTemplates?: string[];\n\tnoPromptTemplates?: boolean;\n\tthemes?: string[];\n\tnoThemes?: boolean;\n\tlistModels?: string | true;\n\toffline?: boolean;\n\tsessionTrace?: boolean;\n\tsessionTraceDir?: string;\n\tverbose?: boolean;\n\t/** Enable plan mode: agent explores read-only then presents plan for approval before executing */\n\tplan?: boolean;\n\t/** Agent profile to use: full | plan | iosm (main) plus advanced/internal profiles */\n\tprofile?: string;\n\tmessages: string[];\n\tfileArgs: string[];\n\t/** Unknown flags (potentially extension flags) - map of flag name to value */\n\tunknownFlags: Map<string, boolean | string>;\n}\n\nconst VALID_THINKING_LEVELS = [\"off\", \"minimal\", \"low\", \"medium\", \"high\", \"xhigh\"] as const;\n\nexport function isValidThinkingLevel(level: string): level is ThinkingLevel {\n\treturn VALID_THINKING_LEVELS.includes(level as ThinkingLevel);\n}\n\nexport function parseArgs(args: string[], extensionFlags?: Map<string, { type: \"boolean\" | \"string\" }>): Args {\n\tconst result: Args = {\n\t\tmessages: [],\n\t\tfileArgs: [],\n\t\tunknownFlags: new Map(),\n\t};\n\n\tfor (let i = 0; i < args.length; i++) {\n\t\tconst arg = args[i];\n\n\t\tif (arg === \"--help\" || arg === \"-h\") {\n\t\t\tresult.help = true;\n\t\t} else if (arg === \"--version\" || arg === \"-v\") {\n\t\t\tresult.version = true;\n\t\t} else if (arg === \"--mode\" && i + 1 < args.length) {\n\t\t\tconst mode = args[++i];\n\t\t\tif (mode === \"text\" || mode === \"json\" || mode === \"rpc\") {\n\t\t\t\tresult.mode = mode;\n\t\t\t}\n\t\t} else if (arg === \"--continue\" || arg === \"-c\") {\n\t\t\tresult.continue = true;\n\t\t} else if (arg === \"--resume\" || arg === \"-r\") {\n\t\t\tresult.resume = true;\n\t\t} else if (arg === \"--provider\" && i + 1 < args.length) {\n\t\t\tresult.provider = args[++i];\n\t\t} else if (arg === \"--model\" && i + 1 < args.length) {\n\t\t\tresult.model = 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[];\n\t\t\tfor (const name of toolNames) {\n\t\t\t\tif (name in allTools) {\n\t\t\t\t\tvalidTools.push(name as ToolName);\n\t\t\t\t} else {\n\t\t\t\t\tconsole.error(\n\t\t\t\t\t\tchalk.yellow(`Warning: Unknown tool \"${name}\". Valid tools: ${Object.keys(allTools).join(\", \")}`),\n\t\t\t\t\t);\n\t\t\t\t}\n\t\t\t}\n\t\t\tresult.tools = validTools;\n\t\t} else if (arg === \"--thinking\" && i + 1 < args.length) {\n\t\t\tconst level = args[++i];\n\t\t\tif (isValidThinkingLevel(level)) {\n\t\t\t\tresult.thinking = level;\n\t\t\t} else {\n\t\t\t\tconsole.error(\n\t\t\t\t\tchalk.yellow(\n\t\t\t\t\t\t`Warning: Invalid thinking level \"${level}\". Valid values: ${VALID_THINKING_LEVELS.join(\", \")}`,\n\t\t\t\t\t),\n\t\t\t\t);\n\t\t\t}\n\t\t} else if (arg === \"--print\" || arg === \"-p\") {\n\t\t\tresult.print = true;\n\t\t} else if (arg === \"--export\" && i + 1 < args.length) {\n\t\t\tresult.export = args[++i];\n\t\t} else if ((arg === \"--extension\" || arg === \"-e\") && i + 1 < args.length) {\n\t\t\tresult.extensions = result.extensions ?? [];\n\t\t\tresult.extensions.push(args[++i]);\n\t\t} else if (arg === \"--no-extensions\" || arg === \"-ne\") {\n\t\t\tresult.noExtensions = true;\n\t\t} else if (arg === \"--skill\" && i + 1 < args.length) {\n\t\t\tresult.skills = result.skills ?? [];\n\t\t\tresult.skills.push(args[++i]);\n\t\t} else if (arg === \"--prompt-template\" && i + 1 < args.length) {\n\t\t\tresult.promptTemplates = result.promptTemplates ?? [];\n\t\t\tresult.promptTemplates.push(args[++i]);\n\t\t} else if (arg === \"--theme\" && i + 1 < args.length) {\n\t\t\tresult.themes = result.themes ?? [];\n\t\t\tresult.themes.push(args[++i]);\n\t\t} else if (arg === \"--no-skills\" || arg === \"-ns\") {\n\t\t\tresult.noSkills = true;\n\t\t} else if (arg === \"--no-prompt-templates\" || arg === \"-np\") {\n\t\t\tresult.noPromptTemplates = true;\n\t\t} else if (arg === \"--no-themes\") {\n\t\t\tresult.noThemes = true;\n\t\t} else if (arg === \"--list-models\") {\n\t\t\t// Check if next arg is a search pattern (not a flag or file arg)\n\t\t\tif (i + 1 < args.length && !args[i + 1].startsWith(\"-\") && !args[i + 1].startsWith(\"@\")) {\n\t\t\t\tresult.listModels = args[++i];\n\t\t\t} else {\n\t\t\t\tresult.listModels = true;\n\t\t\t}\n\t\t} else if (arg === \"--verbose\") {\n\t\t\tresult.verbose = true;\n\t\t} else if (arg === \"--plan\") {\n\t\t\tresult.plan = true;\n\t\t} else if (arg === \"--profile\" && i + 1 < args.length) {\n\t\t\tresult.profile = args[++i];\n\t\t} else if (arg === \"--offline\") {\n\t\t\tresult.offline = true;\n\t\t} else if (arg === \"--session-trace\") {\n\t\t\tresult.sessionTrace = true;\n\t\t} else if (arg === \"--session-trace-dir\" && i + 1 < args.length) {\n\t\t\tresult.sessionTraceDir = args[++i];\n\t\t} else if (arg.startsWith(\"@\")) {\n\t\t\tresult.fileArgs.push(arg.slice(1)); // Remove @ prefix\n\t\t} else if (arg.startsWith(\"--\") && extensionFlags) {\n\t\t\t// Check if it's an extension-registered flag\n\t\t\tconst flagName = arg.slice(2);\n\t\t\tconst extFlag = extensionFlags.get(flagName);\n\t\t\tif (extFlag) {\n\t\t\t\tif (extFlag.type === \"boolean\") {\n\t\t\t\t\tresult.unknownFlags.set(flagName, true);\n\t\t\t\t} else if (extFlag.type === \"string\" && i + 1 < args.length) {\n\t\t\t\t\tresult.unknownFlags.set(flagName, args[++i]);\n\t\t\t\t}\n\t\t\t}\n\t\t\t// Unknown flags without extensionFlags are silently ignored (first pass)\n\t\t} else if (!arg.startsWith(\"-\")) {\n\t\t\tresult.messages.push(arg);\n\t\t}\n\t}\n\n\treturn result;\n}\n\nexport function printHelp(): void {\n\tconsole.log(`${chalk.bold(APP_NAME)} - IOSM agent CLI with read, bash, edit, write tools\n\n${chalk.bold(\"Usage:\")}\n  ${APP_NAME} [options] [@files...] [messages...]\n\n${chalk.bold(\"Commands:\")}\n  ${APP_NAME} init [path] [--force]   Initialize IOSM, analyze project, run verification, and create IOSM.md playbook\n  ${APP_NAME} cycle <subcommand>      Manage IOSM cycle scaffolds, reports, and status\n  ${APP_NAME} install <source> [-l]    Install extension source and add to settings\n  ${APP_NAME} remove <source> [-l]     Remove extension source from settings\n  ${APP_NAME} update [source]          Update installed extensions (skips pinned sources)\n  ${APP_NAME} list                     List installed extensions from settings\n  ${APP_NAME} mcp <subcommand>         Manage MCP servers and inspect MCP tools\n  ${APP_NAME} semantic <subcommand>    Manage semantic index (status/index/rebuild/query)\n  ${APP_NAME} config                   Open TUI to enable/disable package resources\n  ${APP_NAME} <command> --help         Show help for init/cycle/install/remove/update/list/mcp/semantic\n\n${chalk.bold(\"Options:\")}\n  --provider <name>              Provider name (requires --model)\n  --model <pattern>              Model pattern or ID (supports \"provider/id\" and optional \":<thinking>\")\n  --api-key <key>                API key (defaults to env vars)\n  --system-prompt <text>         System prompt (default: IOSM agent prompt)\n  --append-system-prompt <text>  Append text or file contents to the system prompt\n  --mode <mode>                  Output mode: text (default), json, or rpc\n  --print, -p                    Non-interactive mode: process prompt and exit\n  --continue, -c                 Continue previous session\n  --resume, -r                   Select a session to resume\n  --session <path>               Use specific session file\n  --session-dir <dir>            Directory for session storage and lookup\n  --no-session                   Don't save session (ephemeral)\n  --models <patterns>            Comma-separated model patterns for Ctrl+P cycling\n                                 Supports globs (anthropic/*, *sonnet*) and fuzzy matching\n\t--no-tools                     Disable all built-in tools\n\t--tools <tools>                Comma-separated list of tools to enable (default: read,bash,edit,write)\n\t                                 Available: read, bash, edit, write, grep, find, ls, rg, fd, ast_grep, comby, jq, yq, semgrep, sed, semantic_search\n  --thinking <level>             Set thinking level: off, minimal, low, medium, high, xhigh\n  --extension, -e <path>         Load an extension file (can be used multiple times)\n  --no-extensions, -ne           Disable extension discovery (explicit -e paths still work)\n  --skill <path>                 Load a skill file or directory (can be used multiple times)\n  --no-skills, -ns               Disable skills discovery and loading\n  --prompt-template <path>       Load a prompt template file or directory (can be used multiple times)\n  --no-prompt-templates, -np     Disable prompt template discovery and loading\n  --theme <path>                 Load a theme file or directory (can be used multiple times)\n  --no-themes                    Disable theme discovery and loading\n  --export <file>                Export session file to HTML and exit\n  --list-models [search]         List available models (with optional fuzzy search)\n  --verbose                      Force verbose startup (overrides quietStartup setting)\n  --plan                         Plan mode: explore read-only, show plan, wait for approval before executing\n  --profile <name>               Agent profile: full, plan, iosm (main modes) + explore, iosm_analyst, iosm_verifier, cycle_planner\n  --offline                      Disable startup network operations (same as ${ENV_OFFLINE}=1)\n  --session-trace                Enable full session trace JSONL logging\n  --session-trace-dir <dir>      Directory for session trace logs (default: ~/${CONFIG_DIR_NAME}/agent/session-traces)\n  --help, -h                     Show this help\n  --version, -v                  Show version number\n\nExtensions can register additional flags (e.g., --plan from plan-mode extension).\n\n${chalk.bold(\"Examples:\")}\n  # Interactive mode\n  ${APP_NAME}\n\n  # Initialize IOSM config and artifact scaffold\n  ${APP_NAME} init\n\n  # Create a cycle scaffold\n  ${APP_NAME} cycle plan \"reduce checkout latency\"\n\n  # Show the latest cycle report\n  ${APP_NAME} cycle report\n\n  # Show cycle completeness and gate status\n  ${APP_NAME} cycle status\n\n  # Interactive mode with initial prompt\n  ${APP_NAME} \"List all .ts files in src/\"\n\n  # Include files in initial message\n  ${APP_NAME} @prompt.md @image.png \"What color is the sky?\"\n\n  # Non-interactive mode (process and exit)\n  ${APP_NAME} -p \"List all .ts files in src/\"\n\n  # Multiple messages (interactive)\n  ${APP_NAME} \"Read package.json\" \"What dependencies do we have?\"\n\n  # Continue previous session\n  ${APP_NAME} --continue \"What did we discuss?\"\n\n  # Use different model\n  ${APP_NAME} --provider openai --model gpt-4o-mini \"Help me refactor this code\"\n\n  # Use model with provider prefix (no --provider needed)\n  ${APP_NAME} --model openai/gpt-4o \"Help me refactor this code\"\n\n  # Use model with thinking level shorthand\n  ${APP_NAME} --model sonnet:high \"Solve this complex problem\"\n\n  # Limit model cycling to specific models\n  ${APP_NAME} --models claude-sonnet,claude-haiku,gpt-4o\n\n  # Limit to a specific provider with glob pattern\n  ${APP_NAME} --models \"github-copilot/*\"\n\n  # Cycle models with fixed thinking levels\n  ${APP_NAME} --models sonnet:high,haiku:low\n\n  # Start with a specific thinking level\n  ${APP_NAME} --thinking high \"Solve this complex problem\"\n\n  # Read-only mode (no file modifications possible)\n  ${APP_NAME} --tools read,grep,find,ls -p \"Review the code in src/\"\n\n  # Export a session file to HTML\n  ${APP_NAME} --export ~/${CONFIG_DIR_NAME}/agent/sessions/--path--/session.jsonl\n  ${APP_NAME} --export session.jsonl output.html\n\n${chalk.bold(\"Environment Variables:\")}\n  ANTHROPIC_API_KEY                - Anthropic Claude API key\n  ANTHROPIC_OAUTH_TOKEN            - Anthropic OAuth token (alternative to API key)\n  OPENAI_API_KEY                   - OpenAI GPT API key\n  AZURE_OPENAI_API_KEY             - Azure OpenAI API key\n  AZURE_OPENAI_BASE_URL            - Azure OpenAI base URL (https://{resource}.openai.azure.com/openai/v1)\n  AZURE_OPENAI_RESOURCE_NAME       - Azure OpenAI resource name (alternative to base URL)\n  AZURE_OPENAI_API_VERSION         - Azure OpenAI API version (default: v1)\n  AZURE_OPENAI_DEPLOYMENT_NAME_MAP - Azure OpenAI model=deployment map (comma-separated)\n  GEMINI_API_KEY                   - Google Gemini API key\n  GROQ_API_KEY                     - Groq API key\n  CEREBRAS_API_KEY                 - Cerebras API key\n  XAI_API_KEY                      - xAI Grok API key\n  OPENROUTER_API_KEY               - OpenRouter API key\n  AI_GATEWAY_API_KEY               - Vercel AI Gateway API key\n  ZAI_API_KEY                      - ZAI API key\n  MISTRAL_API_KEY                  - Mistral API key\n  MINIMAX_API_KEY                  - MiniMax API key\n  OPENCODE_API_KEY                 - OpenCode Zen/OpenCode Go API key\n  KIMI_API_KEY                     - Kimi For Coding API key\n  AWS_PROFILE                      - AWS profile for Amazon Bedrock\n  AWS_ACCESS_KEY_ID                - AWS access key for Amazon Bedrock\n  AWS_SECRET_ACCESS_KEY            - AWS secret key for Amazon Bedrock\n  AWS_BEARER_TOKEN_BEDROCK         - Bedrock API key (bearer token)\n  AWS_REGION                       - AWS region for Amazon Bedrock (e.g., us-east-1)\n  ${ENV_AGENT_DIR.padEnd(32)} - Session storage directory (default: ~/${CONFIG_DIR_NAME}/agent)\n  ${ENV_PACKAGE_DIR.padEnd(32)} - Override package directory (for Nix/Guix store paths)\n  ${ENV_OFFLINE.padEnd(32)} - Disable startup network operations when set to 1/true/yes\n  ${ENV_SESSION_TRACE.padEnd(32)} - Enable full session trace logging when set to 1/true/yes\n  ${ENV_SESSION_TRACE_DIR.padEnd(32)} - Session trace directory override\n  ${ENV_SHARE_VIEWER_URL.padEnd(32)} - Base URL for /share command (default: https://iosm.dev/session/)\n  ${ENV_AI_ANTIGRAVITY_VERSION.padEnd(32)} - Override Antigravity User-Agent version (e.g., 1.23.0)\n${chalk.bold(\"Available Tools (default: read, bash, edit, write):\")}\n  read   - Read file contents\n  bash   - Execute bash commands\n  edit   - Edit files with find/replace\n  write  - Write files (creates/overwrites)\n  grep   - Search file contents (read-only, off by default)\n  find   - Find files by glob pattern (read-only, off by default)\n  ls     - List directory contents (read-only, off by default)\n  rg     - Direct ripgrep tool (advanced regex search)\n  fd     - Direct fd tool (fast file discovery)\n  ast_grep - AST/syntax-aware structural code search\n  comby  - Structural match/rewrite preview tool (no in-place edits)\n  jq     - JSON query/transform tool\n  yq     - YAML/JSON/TOML query/transform tool\n  semgrep - Structural static/security scan tool\n  sed    - Stream editing/extraction tool (no in-place edits)\n  semantic_search - Embedding-based semantic search (status/index/rebuild/query)\n`);\n}\n"]}

package/dist/core/agent-profiles.d.ts.map

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package/dist/core/agent-profiles.js

@@ -11,6 +11,7 @@ const READ_EXPLORATION_TOOLS = [
     "yq",
     "semgrep",
     "sed",
+    "semantic_search",
 ];
 const WRITE_ENGINEERING_TOOLS = ["read", "bash", "edit", "write", ...READ_EXPLORATION_TOOLS.slice(1)];
 export const AGENT_PROFILES = {

package/dist/core/agent-profiles.js.map

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No file modifications.\",\n\t\ttools: [...READ_EXPLORATION_TOOLS],\n\t\tthinkingLevel: \"off\",\n\t\tsystemPromptAppend:\n\t\t\t\"You are in EXPLORE mode. You may ONLY read files — never write, edit, or run commands that modify state. Answer concisely. Prefer grep/find/ls over bash. Explore fast and report findings.\",\n\t\tmainMode: false,\n\t},\n\tplan: {\n\t\tname: \"plan\",\n\t\tlabel: \"Plan\",\n\t\tdescription:\n\t\t\t\"Technical architect. Explores codebase and produces implementation plan without executing.\",\n\t\ttools: [\"read\", \"bash\", ...READ_EXPLORATION_TOOLS.slice(1)],\n\t\tthinkingLevel: \"medium\",\n\t\tsystemPromptAppend:\n\t\t\t\"You are in PLAN mode. Explore the codebase thoroughly, then produce a detailed implementation plan. Do NOT write or edit any files. Output a structured plan with steps, risks, and trade-offs. 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No file modifications.\",\n\t\ttools: [...READ_EXPLORATION_TOOLS],\n\t\tthinkingLevel: \"off\",\n\t\tsystemPromptAppend:\n\t\t\t\"You are in EXPLORE mode. You may ONLY read files — never write, edit, or run commands that modify state. Answer concisely. Prefer grep/find/ls over bash. Explore fast and report findings.\",\n\t\tmainMode: false,\n\t},\n\tplan: {\n\t\tname: \"plan\",\n\t\tlabel: \"Plan\",\n\t\tdescription:\n\t\t\t\"Technical architect. Explores codebase and produces implementation plan without executing.\",\n\t\ttools: [\"read\", \"bash\", ...READ_EXPLORATION_TOOLS.slice(1)],\n\t\tthinkingLevel: \"medium\",\n\t\tsystemPromptAppend:\n\t\t\t\"You are in PLAN mode. Explore the codebase thoroughly, then produce a detailed implementation plan. Do NOT write or edit any files. Output a structured plan with steps, risks, and trade-offs. 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package/dist/core/agent-session.d.ts.map

@@ -1 +1 @@
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package/dist/core/agent-session.js

@@ -2323,6 +2323,9 @@ export class AgentSession {
                         return this._toolPermissionHandler ? this._toolPermissionHandler(request) : true;
                     },
                 },
+                semantic: {
+                    authStorage: this._modelRegistry.authStorage,
+                },
             });
         this._baseToolRegistry = new Map(Object.entries(baseTools).map(([name, tool]) => [name, tool]));
         const extensionsResult = this._resourceLoader.getExtensions();