image-js 1.0.0-alpha.2 → 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +2 -2
- package/README.md +37 -0
- package/dist/image-js.esm.js +33179 -0
- package/dist/image-js.esm.js.map +1 -0
- package/dist/image-js.esm.min.js +3 -0
- package/dist/image-js.esm.min.js.map +1 -0
- package/dist/image-js.umd.js +33324 -0
- package/dist/image-js.umd.js.map +1 -0
- package/dist/image-js.umd.min.js +3 -0
- package/dist/image-js.umd.min.js.map +1 -0
- package/dist-types/image-js.d.ts +4260 -0
- package/lib/Image.d.ts +447 -71
- package/lib/Image.d.ts.map +1 -1
- package/lib/Image.js +751 -127
- package/lib/Image.js.map +1 -1
- package/lib/Mask.d.ts +378 -0
- package/lib/Mask.d.ts.map +1 -0
- package/lib/Mask.js +557 -0
- package/lib/Mask.js.map +1 -0
- package/lib/Stack.d.ts +127 -0
- package/lib/Stack.d.ts.map +1 -0
- package/lib/Stack.js +165 -0
- package/lib/Stack.js.map +1 -0
- package/lib/align/affineTransfrom/affineFitFunction.d.ts +10 -0
- package/lib/align/affineTransfrom/affineFitFunction.d.ts.map +1 -0
- package/lib/align/affineTransfrom/affineFitFunction.js +21 -0
- package/lib/align/affineTransfrom/affineFitFunction.js.map +1 -0
- package/lib/align/affineTransfrom/applyAffineTransform.d.ts +10 -0
- package/lib/align/affineTransfrom/applyAffineTransform.d.ts.map +1 -0
- package/lib/align/affineTransfrom/applyAffineTransform.js +19 -0
- package/lib/align/affineTransfrom/applyAffineTransform.js.map +1 -0
- package/lib/align/affineTransfrom/createAffineTransformModel.d.ts +10 -0
- package/lib/align/affineTransfrom/createAffineTransformModel.d.ts.map +1 -0
- package/lib/align/affineTransfrom/createAffineTransformModel.js +23 -0
- package/lib/align/affineTransfrom/createAffineTransformModel.js.map +1 -0
- package/lib/align/affineTransfrom/drawResult.d.ts +12 -0
- package/lib/align/affineTransfrom/drawResult.d.ts.map +1 -0
- package/lib/align/affineTransfrom/drawResult.js +38 -0
- package/lib/align/affineTransfrom/drawResult.js.map +1 -0
- package/lib/align/affineTransfrom/getAffineTransform.d.ts +97 -0
- package/lib/align/affineTransfrom/getAffineTransform.d.ts.map +1 -0
- package/lib/align/affineTransfrom/getAffineTransform.js +145 -0
- package/lib/align/affineTransfrom/getAffineTransform.js.map +1 -0
- package/lib/align/affineTransfrom/getEuclideanDistance.d.ts +9 -0
- package/lib/align/affineTransfrom/getEuclideanDistance.d.ts.map +1 -0
- package/lib/align/affineTransfrom/getEuclideanDistance.js +10 -0
- package/lib/align/affineTransfrom/getEuclideanDistance.js.map +1 -0
- package/lib/align/affineTransfrom/getMatrixFromPoints.d.ts +10 -0
- package/lib/align/affineTransfrom/getMatrixFromPoints.d.ts.map +1 -0
- package/lib/align/affineTransfrom/getMatrixFromPoints.js +17 -0
- package/lib/align/affineTransfrom/getMatrixFromPoints.js.map +1 -0
- package/lib/align/affineTransfrom/getPointsFromMatrix.d.ts +9 -0
- package/lib/align/affineTransfrom/getPointsFromMatrix.d.ts.map +1 -0
- package/lib/align/affineTransfrom/getPointsFromMatrix.js +13 -0
- package/lib/align/affineTransfrom/getPointsFromMatrix.js.map +1 -0
- package/lib/align/affineTransfrom/utils/getSourceWithoutMargins.d.ts +11 -0
- package/lib/align/affineTransfrom/utils/getSourceWithoutMargins.d.ts.map +1 -0
- package/lib/align/affineTransfrom/utils/getSourceWithoutMargins.js +17 -0
- package/lib/align/affineTransfrom/utils/getSourceWithoutMargins.js.map +1 -0
- package/lib/align/alignMinDifference.d.ts +25 -0
- package/lib/align/alignMinDifference.d.ts.map +1 -0
- package/lib/align/alignMinDifference.js +79 -0
- package/lib/align/alignMinDifference.js.map +1 -0
- package/lib/align/index.d.ts +3 -0
- package/lib/align/index.d.ts.map +1 -0
- package/lib/align/index.js +3 -0
- package/lib/align/index.js.map +1 -0
- package/lib/compare/add.d.ts +10 -0
- package/lib/compare/add.d.ts.map +1 -0
- package/lib/compare/add.js +32 -0
- package/lib/compare/add.js.map +1 -0
- package/lib/compare/computePsnr.d.ts +11 -0
- package/lib/compare/computePsnr.d.ts.map +1 -0
- package/lib/compare/computePsnr.js +14 -0
- package/lib/compare/computePsnr.js.map +1 -0
- package/lib/compare/computeRmse.d.ts +18 -0
- package/lib/compare/computeRmse.d.ts.map +1 -0
- package/lib/compare/computeRmse.js +30 -0
- package/lib/compare/computeRmse.js.map +1 -0
- package/lib/compare/divide.d.ts +22 -0
- package/lib/compare/divide.d.ts.map +1 -0
- package/lib/compare/divide.js +31 -0
- package/lib/compare/divide.js.map +1 -0
- package/lib/compare/index.d.ts +7 -0
- package/lib/compare/index.d.ts.map +1 -0
- package/lib/compare/index.js +7 -0
- package/lib/compare/index.js.map +1 -0
- package/lib/compare/multiply.d.ts +22 -0
- package/lib/compare/multiply.d.ts.map +1 -0
- package/lib/compare/multiply.js +28 -0
- package/lib/compare/multiply.js.map +1 -0
- package/lib/compare/subtract.d.ts +13 -0
- package/lib/compare/subtract.d.ts.map +1 -0
- package/lib/compare/subtract.js +58 -0
- package/lib/compare/subtract.js.map +1 -0
- package/lib/compute/getExtrema.d.ts +33 -0
- package/lib/compute/getExtrema.d.ts.map +1 -0
- package/lib/compute/getExtrema.js +72 -0
- package/lib/compute/getExtrema.js.map +1 -0
- package/lib/compute/histogram.d.ts +12 -4
- package/lib/compute/histogram.d.ts.map +1 -1
- package/lib/compute/histogram.js +17 -11
- package/lib/compute/histogram.js.map +1 -1
- package/lib/compute/index.d.ts +5 -1
- package/lib/compute/index.d.ts.map +1 -1
- package/lib/compute/index.js +5 -6
- package/lib/compute/index.js.map +1 -1
- package/lib/compute/mean.d.ts +17 -0
- package/lib/compute/mean.d.ts.map +1 -0
- package/lib/compute/mean.js +37 -0
- package/lib/compute/mean.js.map +1 -0
- package/lib/compute/median.d.ts +16 -0
- package/lib/compute/median.d.ts.map +1 -0
- package/lib/compute/median.js +37 -0
- package/lib/compute/median.js.map +1 -0
- package/lib/compute/variance.d.ts +17 -0
- package/lib/compute/variance.d.ts.map +1 -0
- package/lib/compute/variance.js +33 -0
- package/lib/compute/variance.js.map +1 -0
- package/lib/correctColor/correctColor.d.ts +22 -0
- package/lib/correctColor/correctColor.d.ts.map +1 -0
- package/lib/correctColor/correctColor.js +75 -0
- package/lib/correctColor/correctColor.js.map +1 -0
- package/lib/correctColor/index.d.ts +2 -0
- package/lib/correctColor/index.d.ts.map +1 -0
- package/lib/correctColor/index.js +2 -0
- package/lib/correctColor/index.js.map +1 -0
- package/lib/correctColor/utils/formatData.d.ts +37 -0
- package/lib/correctColor/utils/formatData.d.ts.map +1 -0
- package/lib/correctColor/utils/formatData.js +60 -0
- package/lib/correctColor/utils/formatData.js.map +1 -0
- package/lib/correctColor/utils/getImageColors.d.ts +9 -0
- package/lib/correctColor/utils/getImageColors.d.ts.map +1 -0
- package/lib/correctColor/utils/getImageColors.js +19 -0
- package/lib/correctColor/utils/getImageColors.js.map +1 -0
- package/lib/correctColor/utils/referenceColorCard.d.ts +42 -0
- package/lib/correctColor/utils/referenceColorCard.d.ts.map +1 -0
- package/lib/correctColor/utils/referenceColorCard.js +146 -0
- package/lib/correctColor/utils/referenceColorCard.js.map +1 -0
- package/lib/draw/drawCircleOnImage.d.ts +28 -0
- package/lib/draw/drawCircleOnImage.d.ts.map +1 -0
- package/lib/draw/drawCircleOnImage.js +75 -0
- package/lib/draw/drawCircleOnImage.js.map +1 -0
- package/lib/draw/drawLineOnImage.d.ts +28 -0
- package/lib/draw/drawLineOnImage.d.ts.map +1 -0
- package/lib/draw/drawLineOnImage.js +27 -0
- package/lib/draw/drawLineOnImage.js.map +1 -0
- package/lib/draw/drawLineOnMask.d.ts +23 -0
- package/lib/draw/drawLineOnMask.d.ts.map +1 -0
- package/lib/draw/drawLineOnMask.js +19 -0
- package/lib/draw/drawLineOnMask.js.map +1 -0
- package/lib/draw/drawMarker.d.ts +36 -0
- package/lib/draw/drawMarker.d.ts.map +1 -0
- package/lib/draw/drawMarker.js +62 -0
- package/lib/draw/drawMarker.js.map +1 -0
- package/lib/draw/drawMarkers.d.ts +12 -0
- package/lib/draw/drawMarkers.d.ts.map +1 -0
- package/lib/draw/drawMarkers.js +17 -0
- package/lib/draw/drawMarkers.js.map +1 -0
- package/lib/draw/drawPoints.d.ts +22 -0
- package/lib/draw/drawPoints.d.ts.map +1 -0
- package/lib/draw/drawPoints.js +32 -0
- package/lib/draw/drawPoints.js.map +1 -0
- package/lib/draw/drawPolygonOnImage.d.ts +24 -0
- package/lib/draw/drawPolygonOnImage.d.ts.map +1 -0
- package/lib/draw/drawPolygonOnImage.js +44 -0
- package/lib/draw/drawPolygonOnImage.js.map +1 -0
- package/lib/draw/drawPolygonOnMask.d.ts +23 -0
- package/lib/draw/drawPolygonOnMask.d.ts.map +1 -0
- package/lib/draw/drawPolygonOnMask.js +35 -0
- package/lib/draw/drawPolygonOnMask.js.map +1 -0
- package/lib/draw/drawPolylineOnImage.d.ts +27 -0
- package/lib/draw/drawPolylineOnImage.d.ts.map +1 -0
- package/lib/draw/drawPolylineOnImage.js +26 -0
- package/lib/draw/drawPolylineOnImage.js.map +1 -0
- package/lib/draw/drawPolylineOnMask.d.ts +22 -0
- package/lib/draw/drawPolylineOnMask.d.ts.map +1 -0
- package/lib/draw/drawPolylineOnMask.js +18 -0
- package/lib/draw/drawPolylineOnMask.js.map +1 -0
- package/lib/draw/drawRectangle.d.ts +37 -0
- package/lib/draw/drawRectangle.d.ts.map +1 -0
- package/lib/draw/drawRectangle.js +50 -0
- package/lib/draw/drawRectangle.js.map +1 -0
- package/lib/draw/index.d.ts +12 -0
- package/lib/draw/index.d.ts.map +1 -0
- package/lib/draw/index.js +12 -0
- package/lib/draw/index.js.map +1 -0
- package/lib/draw/utils/deleteDuplicates.d.ts +8 -0
- package/lib/draw/utils/deleteDuplicates.d.ts.map +1 -0
- package/lib/draw/utils/deleteDuplicates.js +19 -0
- package/lib/draw/utils/deleteDuplicates.js.map +1 -0
- package/lib/draw/utils/roundPoint.d.ts +8 -0
- package/lib/draw/utils/roundPoint.d.ts.map +1 -0
- package/lib/draw/utils/roundPoint.js +12 -0
- package/lib/draw/utils/roundPoint.js.map +1 -0
- package/lib/featureMatching/descriptors/getBrief.d.ts +15 -0
- package/lib/featureMatching/descriptors/getBrief.d.ts.map +1 -0
- package/lib/featureMatching/descriptors/getBrief.js +29 -0
- package/lib/featureMatching/descriptors/getBrief.js.map +1 -0
- package/lib/featureMatching/descriptors/getBriefDescriptors.d.ts +43 -0
- package/lib/featureMatching/descriptors/getBriefDescriptors.d.ts.map +1 -0
- package/lib/featureMatching/descriptors/getBriefDescriptors.js +58 -0
- package/lib/featureMatching/descriptors/getBriefDescriptors.js.map +1 -0
- package/lib/featureMatching/descriptors/utils/getKeypointPatch.d.ts +18 -0
- package/lib/featureMatching/descriptors/utils/getKeypointPatch.d.ts.map +1 -0
- package/lib/featureMatching/descriptors/utils/getKeypointPatch.js +32 -0
- package/lib/featureMatching/descriptors/utils/getKeypointPatch.js.map +1 -0
- package/lib/featureMatching/descriptors/utils/sliceBrief.d.ts +21 -0
- package/lib/featureMatching/descriptors/utils/sliceBrief.d.ts.map +1 -0
- package/lib/featureMatching/descriptors/utils/sliceBrief.js +17 -0
- package/lib/featureMatching/descriptors/utils/sliceBrief.js.map +1 -0
- package/lib/featureMatching/featureMatching.types.d.ts +26 -0
- package/lib/featureMatching/featureMatching.types.d.ts.map +1 -0
- package/lib/featureMatching/featureMatching.types.js +2 -0
- package/lib/featureMatching/featureMatching.types.js.map +1 -0
- package/lib/featureMatching/index.d.ts +13 -0
- package/lib/featureMatching/index.d.ts.map +1 -0
- package/lib/featureMatching/index.js +13 -0
- package/lib/featureMatching/index.js.map +1 -0
- package/lib/featureMatching/keypoints/getBestKeypointsInRadius.d.ts +9 -0
- package/lib/featureMatching/keypoints/getBestKeypointsInRadius.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getBestKeypointsInRadius.js +30 -0
- package/lib/featureMatching/keypoints/getBestKeypointsInRadius.js.map +1 -0
- package/lib/featureMatching/keypoints/getFastKeypoints.d.ts +53 -0
- package/lib/featureMatching/keypoints/getFastKeypoints.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getFastKeypoints.js +71 -0
- package/lib/featureMatching/keypoints/getFastKeypoints.js.map +1 -0
- package/lib/featureMatching/keypoints/getFastScore.d.ts +13 -0
- package/lib/featureMatching/keypoints/getFastScore.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getFastScore.js +25 -0
- package/lib/featureMatching/keypoints/getFastScore.js.map +1 -0
- package/lib/featureMatching/keypoints/getHarrisScore.d.ts +20 -0
- package/lib/featureMatching/keypoints/getHarrisScore.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getHarrisScore.js +55 -0
- package/lib/featureMatching/keypoints/getHarrisScore.js.map +1 -0
- package/lib/featureMatching/keypoints/getIntensityCentroid.d.ts +11 -0
- package/lib/featureMatching/keypoints/getIntensityCentroid.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getIntensityCentroid.js +30 -0
- package/lib/featureMatching/keypoints/getIntensityCentroid.js.map +1 -0
- package/lib/featureMatching/keypoints/getIntensityMoment.d.ts +22 -0
- package/lib/featureMatching/keypoints/getIntensityMoment.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getIntensityMoment.js +27 -0
- package/lib/featureMatching/keypoints/getIntensityMoment.js.map +1 -0
- package/lib/featureMatching/keypoints/getOrientedFastKeypoints.d.ts +26 -0
- package/lib/featureMatching/keypoints/getOrientedFastKeypoints.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getOrientedFastKeypoints.js +38 -0
- package/lib/featureMatching/keypoints/getOrientedFastKeypoints.js.map +1 -0
- package/lib/featureMatching/keypoints/getPatchIntensityCentroid.d.ts +13 -0
- package/lib/featureMatching/keypoints/getPatchIntensityCentroid.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getPatchIntensityCentroid.js +31 -0
- package/lib/featureMatching/keypoints/getPatchIntensityCentroid.js.map +1 -0
- package/lib/featureMatching/keypoints/getPatchIntensityMoment.d.ts +27 -0
- package/lib/featureMatching/keypoints/getPatchIntensityMoment.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/getPatchIntensityMoment.js +29 -0
- package/lib/featureMatching/keypoints/getPatchIntensityMoment.js.map +1 -0
- package/lib/featureMatching/keypoints/isFastKeypoint.d.ts +26 -0
- package/lib/featureMatching/keypoints/isFastKeypoint.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/isFastKeypoint.js +74 -0
- package/lib/featureMatching/keypoints/isFastKeypoint.js.map +1 -0
- package/lib/featureMatching/keypoints/utils/getDistanceMatrix.d.ts +9 -0
- package/lib/featureMatching/keypoints/utils/getDistanceMatrix.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/utils/getDistanceMatrix.js +26 -0
- package/lib/featureMatching/keypoints/utils/getDistanceMatrix.js.map +1 -0
- package/lib/featureMatching/keypoints/utils/getKeypointsInRadius.d.ts +10 -0
- package/lib/featureMatching/keypoints/utils/getKeypointsInRadius.d.ts.map +1 -0
- package/lib/featureMatching/keypoints/utils/getKeypointsInRadius.js +26 -0
- package/lib/featureMatching/keypoints/utils/getKeypointsInRadius.js.map +1 -0
- package/lib/featureMatching/matching/bruteForceMatch.d.ts +36 -0
- package/lib/featureMatching/matching/bruteForceMatch.d.ts.map +1 -0
- package/lib/featureMatching/matching/bruteForceMatch.js +33 -0
- package/lib/featureMatching/matching/bruteForceMatch.js.map +1 -0
- package/lib/featureMatching/matching/filterEuclideanDistance.d.ts +21 -0
- package/lib/featureMatching/matching/filterEuclideanDistance.d.ts.map +1 -0
- package/lib/featureMatching/matching/filterEuclideanDistance.js +43 -0
- package/lib/featureMatching/matching/filterEuclideanDistance.js.map +1 -0
- package/lib/featureMatching/matching/filterSmallestDistanceMatches.d.ts +9 -0
- package/lib/featureMatching/matching/filterSmallestDistanceMatches.d.ts.map +1 -0
- package/lib/featureMatching/matching/filterSmallestDistanceMatches.js +25 -0
- package/lib/featureMatching/matching/filterSmallestDistanceMatches.js.map +1 -0
- package/lib/featureMatching/matching/getCrosscheckMatches.d.ts +19 -0
- package/lib/featureMatching/matching/getCrosscheckMatches.d.ts.map +1 -0
- package/lib/featureMatching/matching/getCrosscheckMatches.js +55 -0
- package/lib/featureMatching/matching/getCrosscheckMatches.js.map +1 -0
- package/lib/featureMatching/matching/getHammingDistance.d.ts +10 -0
- package/lib/featureMatching/matching/getHammingDistance.d.ts.map +1 -0
- package/lib/featureMatching/matching/getHammingDistance.js +15 -0
- package/lib/featureMatching/matching/getHammingDistance.js.map +1 -0
- package/lib/featureMatching/utils/checkBorderDistance.d.ts +11 -0
- package/lib/featureMatching/utils/checkBorderDistance.d.ts.map +1 -0
- package/lib/featureMatching/utils/checkBorderDistance.js +14 -0
- package/lib/featureMatching/utils/checkBorderDistance.js.map +1 -0
- package/lib/featureMatching/utils/compareIntensity.d.ts +19 -0
- package/lib/featureMatching/utils/compareIntensity.d.ts.map +1 -0
- package/lib/featureMatching/utils/compareIntensity.js +18 -0
- package/lib/featureMatching/utils/compareIntensity.js.map +1 -0
- package/lib/featureMatching/utils/extractSquareImage.d.ts +11 -0
- package/lib/featureMatching/utils/extractSquareImage.d.ts.map +1 -0
- package/lib/featureMatching/utils/extractSquareImage.js +20 -0
- package/lib/featureMatching/utils/extractSquareImage.js.map +1 -0
- package/lib/featureMatching/utils/getColors.d.ts +11 -0
- package/lib/featureMatching/utils/getColors.d.ts.map +1 -0
- package/lib/featureMatching/utils/getColors.js +25 -0
- package/lib/featureMatching/utils/getColors.js.map +1 -0
- package/lib/featureMatching/utils/getGaussianPoints.d.ts +23 -0
- package/lib/featureMatching/utils/getGaussianPoints.d.ts.map +1 -0
- package/lib/featureMatching/utils/getGaussianPoints.js +46 -0
- package/lib/featureMatching/utils/getGaussianPoints.js.map +1 -0
- package/lib/featureMatching/utils/getKeypointColor.d.ts +11 -0
- package/lib/featureMatching/utils/getKeypointColor.d.ts.map +1 -0
- package/lib/featureMatching/utils/getKeypointColor.js +21 -0
- package/lib/featureMatching/utils/getKeypointColor.js.map +1 -0
- package/lib/featureMatching/utils/getMatchColor.d.ts +11 -0
- package/lib/featureMatching/utils/getMatchColor.d.ts.map +1 -0
- package/lib/featureMatching/utils/getMatchColor.js +20 -0
- package/lib/featureMatching/utils/getMatchColor.js.map +1 -0
- package/lib/featureMatching/utils/sortByDistance.d.ts +8 -0
- package/lib/featureMatching/utils/sortByDistance.d.ts.map +1 -0
- package/lib/featureMatching/utils/sortByDistance.js +11 -0
- package/lib/featureMatching/utils/sortByDistance.js.map +1 -0
- package/lib/featureMatching/utils/sortBySourceDest.d.ts +14 -0
- package/lib/featureMatching/utils/sortBySourceDest.d.ts.map +1 -0
- package/lib/featureMatching/utils/sortBySourceDest.js +29 -0
- package/lib/featureMatching/utils/sortBySourceDest.js.map +1 -0
- package/lib/featureMatching/visualize/Montage.d.ts +84 -0
- package/lib/featureMatching/visualize/Montage.d.ts.map +1 -0
- package/lib/featureMatching/visualize/Montage.js +113 -0
- package/lib/featureMatching/visualize/Montage.js.map +1 -0
- package/lib/featureMatching/visualize/drawKeypoints.d.ts +55 -0
- package/lib/featureMatching/visualize/drawKeypoints.d.ts.map +1 -0
- package/lib/featureMatching/visualize/drawKeypoints.js +58 -0
- package/lib/featureMatching/visualize/drawKeypoints.js.map +1 -0
- package/lib/featureMatching/visualize/drawMatches.d.ts +42 -0
- package/lib/featureMatching/visualize/drawMatches.d.ts.map +1 -0
- package/lib/featureMatching/visualize/drawMatches.js +52 -0
- package/lib/featureMatching/visualize/drawMatches.js.map +1 -0
- package/lib/featureMatching/visualize/overlapImages.d.ts +30 -0
- package/lib/featureMatching/visualize/overlapImages.d.ts.map +1 -0
- package/lib/featureMatching/visualize/overlapImages.js +35 -0
- package/lib/featureMatching/visualize/overlapImages.js.map +1 -0
- package/lib/featureMatching/visualize/scaleKeypoints.d.ts +9 -0
- package/lib/featureMatching/visualize/scaleKeypoints.d.ts.map +1 -0
- package/lib/featureMatching/visualize/scaleKeypoints.js +20 -0
- package/lib/featureMatching/visualize/scaleKeypoints.js.map +1 -0
- package/lib/filters/and.d.ts +16 -0
- package/lib/filters/and.d.ts.map +1 -0
- package/lib/filters/and.js +24 -0
- package/lib/filters/and.js.map +1 -0
- package/lib/filters/blur.d.ts +28 -4
- package/lib/filters/blur.d.ts.map +1 -1
- package/lib/filters/blur.js +16 -8
- package/lib/filters/blur.js.map +1 -1
- package/lib/filters/convolution.d.ts +67 -6
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- package/src/operations/thresholds/minError.js +0 -92
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- package/src/operations/thresholds/moments.js +0 -52
- package/src/operations/thresholds/percentile.js +0 -33
- package/src/operations/thresholds/renyiEntropy.js +0 -142
- package/src/operations/thresholds/shanbhag.js +0 -74
- package/src/operations/thresholds/yen.js +0 -56
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- package/src/utils/validators.ts +0 -23
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/*
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* see http://rsb.info.nih.gov/ij/developer/source/ij/process/AutoThresholder.java.html
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* The method is present in: An iterative implementation of Kittler and Illingworth's Minimum Error
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* thresholding:Kittler, J & Illingworth, J (1986), "Minimum error thresholding", Pattern Recognition 19: 41-47
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* @param histogram - the histogram of the image
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/**
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* Return a threshold for a histogram using Li algorithm.
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export default function minError(
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histogram: Uint32Array,
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total: number,
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): number {
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let threshold;
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let Tprev = -2;
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let mu, nu, p, q, sigma2, tau2, w0, w1, w2, sqterm, temp;
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/* Calculate the mean gray-level */
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mean += ih * histogram[ih];
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mean /= total;
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mu = sumB1 / sumA1;
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nu = (sumB2 - sumB1) / (sumA2 - sumA1);
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sigma2 = sumC1 / sumA1 - mu * mu;
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tau2 = (sumC2 - sumC1) / (sumA2 - sumA1) - nu * nu;
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w1 = mu / sigma2 - nu / tau2;
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w2 =
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(mu * mu) / sigma2 -
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(nu * nu) / tau2 +
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Math.log10((sigma2 * (q * q)) / (tau2 * (p * p)));
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+
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// If the next threshold would be imaginary, return with the current one.
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sqterm = w1 * w1 - w0 * w2;
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if (sqterm < 0) {
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return threshold;
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}
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+
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// The updated threshold is the integer part of the solution of the quadratic equation.
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Tprev = threshold;
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temp = (w1 + Math.sqrt(sqterm)) / w0;
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if (Number.isNaN(temp)) {
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threshold = Tprev;
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} else {
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threshold = Math.floor(temp);
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}
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}
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return threshold;
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}
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// aux func
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function sumA(y: Uint32Array, j: number): number {
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let x = 0;
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for (let i = 0; i <= j; i++) {
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x += y[i];
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}
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return x;
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}
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+
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function sumB(y: Uint32Array, j: number): number {
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let x = 0;
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for (let i = 0; i <= j; i++) {
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x += i * y[i];
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}
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return x;
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}
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+
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function sumC(y: Uint32Array, j: number): number {
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let x = 0;
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+
for (let i = 0; i <= j; i++) {
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x += i * i * y[i];
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}
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return x;
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}
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@@ -0,0 +1,77 @@
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1
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// see https://github.com/fiji/Auto_Threshold/blob/master/src/main/java/fiji/threshold/Auto_Threshold.java
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// J. M. S. Prewitt and M. L. Mendelsohn, "The analysis of cell images," in
|
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// Annals of the New York Academy of Sciences, vol. 128, pp. 1035-1053, 1966.
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4
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+
// ported to ImageJ plugin by G.Landini from Antti Niemisto's Matlab code (GPL)
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+
// Original Matlab code Copyright (C) 2004 Antti Niemisto
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// See http://www.cs.tut.fi/~ant/histthresh/ for an excellent slide presentation
|
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// and the original Matlab code
|
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+
|
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9
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/**
|
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* Return a threshold for a histogram.
|
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* @param histogram - Image histogram.
|
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|
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* @returns The threshold.
|
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+
*/
|
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|
+
export default function minimum(histogram: Uint32Array): number {
|
|
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|
+
if (histogram.length < 2) {
|
|
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|
+
// validate that the histogram has at least two color values
|
|
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|
+
return 0;
|
|
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|
+
}
|
|
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|
+
let iterations = 0; // number of iterations of the smoothing process
|
|
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|
+
let threshold = -1;
|
|
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|
+
let max = -1; // maximum color value with a greater number of pixels to 0
|
|
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|
+
let histogramCopy = new Array(histogram.length); // a copy of the histogram
|
|
23
|
+
for (let i = 0; i < histogram.length; i++) {
|
|
24
|
+
histogramCopy[i] = histogram[i];
|
|
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|
+
if (histogram[i] > 0) {
|
|
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|
+
max = i;
|
|
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|
+
}
|
|
28
|
+
}
|
|
29
|
+
while (!bimodalTest(histogramCopy)) {
|
|
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|
+
histogramCopy = smoothed(histogramCopy);
|
|
31
|
+
iterations++;
|
|
32
|
+
if (iterations > 10000) {
|
|
33
|
+
// if they occur more than 10000 iterations it returns -1
|
|
34
|
+
return threshold;
|
|
35
|
+
}
|
|
36
|
+
}
|
|
37
|
+
for (let i = 1; i < max; i++) {
|
|
38
|
+
if (
|
|
39
|
+
histogramCopy[i - 1] > histogramCopy[i] &&
|
|
40
|
+
histogramCopy[i + 1] >= histogramCopy[i]
|
|
41
|
+
) {
|
|
42
|
+
threshold = i;
|
|
43
|
+
break;
|
|
44
|
+
}
|
|
45
|
+
}
|
|
46
|
+
return threshold;
|
|
47
|
+
}
|
|
48
|
+
function smoothed(histogram: number[]): number[] {
|
|
49
|
+
// Smooth with a 3 point running mean filter
|
|
50
|
+
const auHistogram = new Array(histogram.length); // a copy of the histogram for the smoothing process
|
|
51
|
+
for (let i = 1; i < histogram.length - 1; i++) {
|
|
52
|
+
auHistogram[i] = (histogram[i - 1] + histogram[i] + histogram[i + 1]) / 3;
|
|
53
|
+
}
|
|
54
|
+
auHistogram[0] = (histogram[0] + histogram[1]) / 3;
|
|
55
|
+
auHistogram[histogram.length - 1] =
|
|
56
|
+
((histogram.at(-2) as number) + (histogram.at(-1) as number)) / 3;
|
|
57
|
+
return auHistogram;
|
|
58
|
+
}
|
|
59
|
+
|
|
60
|
+
function bimodalTest(histogram: number[]): boolean {
|
|
61
|
+
// It is responsible for determining if a histogram is bimodal
|
|
62
|
+
const len = histogram.length;
|
|
63
|
+
let isBimodal = false;
|
|
64
|
+
let peaks = 0;
|
|
65
|
+
for (let k = 1; k < len - 1; k++) {
|
|
66
|
+
if (histogram[k - 1] < histogram[k] && histogram[k + 1] < histogram[k]) {
|
|
67
|
+
peaks++;
|
|
68
|
+
if (peaks > 2) {
|
|
69
|
+
return false;
|
|
70
|
+
}
|
|
71
|
+
}
|
|
72
|
+
}
|
|
73
|
+
if (peaks === 2) {
|
|
74
|
+
isBimodal = true;
|
|
75
|
+
}
|
|
76
|
+
return isBimodal;
|
|
77
|
+
}
|
|
@@ -0,0 +1,59 @@
|
|
|
1
|
+
// see https://github.com/fiji/Auto_Threshold/blob/master/src/main/java/fiji/threshold/Auto_Threshold.java
|
|
2
|
+
// W. Tsai, "Moment-preserving thresholding: a new approach," Computer Vision,
|
|
3
|
+
// Graphics, and Image Processing, vol. 29, pp. 377-393, 1985.
|
|
4
|
+
// Ported to ImageJ plugin by G.Landini from the the open source project FOURIER 0.8
|
|
5
|
+
// by M. Emre Celebi , Department of Computer Science, Louisiana State University in Shreveport
|
|
6
|
+
// Shreveport, LA 71115, USA
|
|
7
|
+
// http://sourceforge.net/projects/fourier-ipal
|
|
8
|
+
// http://www.lsus.edu/faculty/~ecelebi/fourier.htm
|
|
9
|
+
|
|
10
|
+
/**
|
|
11
|
+
* Return a threshold for a histogram.
|
|
12
|
+
* @param histogram - Image histogram.
|
|
13
|
+
* @param total - Number of pixels in the image.
|
|
14
|
+
* @returns The threshold.
|
|
15
|
+
*/
|
|
16
|
+
export default function moments(histogram: Uint32Array, total: number): number {
|
|
17
|
+
// moments
|
|
18
|
+
const m0 = 1;
|
|
19
|
+
let m1 = 0;
|
|
20
|
+
let m2 = 0;
|
|
21
|
+
let m3 = 0;
|
|
22
|
+
let sum = 0;
|
|
23
|
+
let threshold = -1;
|
|
24
|
+
const histogramLength = histogram.length;
|
|
25
|
+
const normalizedHistogram = [];
|
|
26
|
+
for (let i = 0; i < histogramLength; i++) {
|
|
27
|
+
normalizedHistogram.push(histogram[i] / total);
|
|
28
|
+
}
|
|
29
|
+
/* Calculate the first, second, and third order moments */
|
|
30
|
+
for (let i = 0; i < histogramLength; i++) {
|
|
31
|
+
m1 += i * normalizedHistogram[i];
|
|
32
|
+
m2 += i * i * normalizedHistogram[i];
|
|
33
|
+
m3 += i * i * i * normalizedHistogram[i];
|
|
34
|
+
}
|
|
35
|
+
/*
|
|
36
|
+
First 4 moments of the gray-level image should match the first 4 moments
|
|
37
|
+
of the target binary image. This leads to 4 equalities whose solutions
|
|
38
|
+
are given in the Appendix of Ref. 1
|
|
39
|
+
*/
|
|
40
|
+
const cd = m0 * m2 - m1 * m1; // determinant of the matriz of hankel for moments 2x2
|
|
41
|
+
const c0 = (-m2 * m2 + m1 * m3) / cd;
|
|
42
|
+
const c1 = (m0 * -m3 + m2 * m1) / cd;
|
|
43
|
+
// new two gray values where z0<z1
|
|
44
|
+
const z0 = 0.5 * (-c1 - Math.sqrt(c1 * c1 - 4 * c0));
|
|
45
|
+
const z1 = 0.5 * (-c1 + Math.sqrt(c1 * c1 - 4 * c0));
|
|
46
|
+
const p0 =
|
|
47
|
+
(z1 - m1) /
|
|
48
|
+
(z1 -
|
|
49
|
+
z0); /* Fraction of the object pixels in the target binary image (p0z0+p1z1=m1) */
|
|
50
|
+
// The threshold is the gray-level closest to the p0-tile of the normalized histogram
|
|
51
|
+
for (let i = 0; i < histogramLength; i++) {
|
|
52
|
+
sum += normalizedHistogram[i];
|
|
53
|
+
if (sum > p0) {
|
|
54
|
+
threshold = i;
|
|
55
|
+
break;
|
|
56
|
+
}
|
|
57
|
+
}
|
|
58
|
+
return threshold;
|
|
59
|
+
}
|
|
@@ -5,7 +5,13 @@
|
|
|
5
5
|
* @returns {number} - the threshold
|
|
6
6
|
*/
|
|
7
7
|
|
|
8
|
-
|
|
8
|
+
/**
|
|
9
|
+
* Return a threshold for a histogram using Otsu algorithm.
|
|
10
|
+
* @param histogramCounts - The image histogram.
|
|
11
|
+
* @param total - Total number of pixels of the image.
|
|
12
|
+
* @returns The threshold.
|
|
13
|
+
*/
|
|
14
|
+
export function otsu(histogramCounts: Uint32Array, total: number): number {
|
|
9
15
|
let sumB = 0;
|
|
10
16
|
let wB = 0;
|
|
11
17
|
let maximum = 0;
|
|
@@ -0,0 +1,39 @@
|
|
|
1
|
+
// See http://imagej.nih.gov/ij/download/tools/source/ij/process/AutoThresholder.java
|
|
2
|
+
// W. Doyle, "Operation useful for similarity-invariant pattern recognition,"
|
|
3
|
+
// Journal of the Association for Computing Machinery, vol. 9,pp. 259-267, 1962.
|
|
4
|
+
// ported to ImageJ plugin by G.Landini from Antti Niemisto's Matlab code (GPL)
|
|
5
|
+
// Original Matlab code Copyright (C) 2004 Antti Niemisto
|
|
6
|
+
// See http://www.cs.tut.fi/~ant/histthresh/ for an excellent slide presentation
|
|
7
|
+
// and the original Matlab code.
|
|
8
|
+
|
|
9
|
+
/**
|
|
10
|
+
* Return a threshold for a histogram using percentiles.
|
|
11
|
+
* @param histogram - Image histogram.
|
|
12
|
+
* @returns The threshold.
|
|
13
|
+
*/
|
|
14
|
+
export default function percentile(histogram: Uint32Array): number {
|
|
15
|
+
let threshold = -1;
|
|
16
|
+
const percentile = 0.5; // default fraction of foreground pixels
|
|
17
|
+
const avec = new Array(histogram.length);
|
|
18
|
+
|
|
19
|
+
const total = partialSum(histogram, histogram.length - 1);
|
|
20
|
+
let temp = 1;
|
|
21
|
+
|
|
22
|
+
for (let i = 0; i < histogram.length; i++) {
|
|
23
|
+
avec[i] = Math.abs(partialSum(histogram, i) / total - percentile);
|
|
24
|
+
if (avec[i] < temp) {
|
|
25
|
+
temp = avec[i];
|
|
26
|
+
threshold = i;
|
|
27
|
+
}
|
|
28
|
+
}
|
|
29
|
+
|
|
30
|
+
return threshold;
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
function partialSum(histogram: Uint32Array, endIndex: number): number {
|
|
34
|
+
let x = 0;
|
|
35
|
+
for (let i = 0; i <= endIndex; i++) {
|
|
36
|
+
x += histogram[i];
|
|
37
|
+
}
|
|
38
|
+
return x;
|
|
39
|
+
}
|
|
@@ -0,0 +1,145 @@
|
|
|
1
|
+
// see https://github.com/fiji/Auto_Threshold/blob/master/src/main/java/fiji/threshold/Auto_Threshold.java
|
|
2
|
+
// Kapur J.N., Sahoo P.K., and Wong A.K.C. (1985) "A New Method for
|
|
3
|
+
// Gray-Level Picture Thresholding Using the Entropy of the Histogram"
|
|
4
|
+
// Graphical Models and Image Processing, 29(3): 273-285
|
|
5
|
+
// M. Emre Celebi
|
|
6
|
+
// 06.15.2007
|
|
7
|
+
// Ported to ImageJ plugin by G.Landini from E Celebi's fourier_0.8 routines
|
|
8
|
+
|
|
9
|
+
/**
|
|
10
|
+
* Return a threshold for a histogram using its entropy.
|
|
11
|
+
* @param histogram - The image histogram.
|
|
12
|
+
* @param total - Total number of pixels of the image.
|
|
13
|
+
* @returns The threshold.
|
|
14
|
+
*/
|
|
15
|
+
export default function renyiEntropy(histogram: Uint32Array, total: number) {
|
|
16
|
+
let firstBin; // First non-zero bin
|
|
17
|
+
let lastBin; // last non-zero bin
|
|
18
|
+
|
|
19
|
+
const normHisto = new Array<number>(histogram.length); // normalized histogram
|
|
20
|
+
const P1 = new Array<number>(histogram.length); // accumulative normalized histogram
|
|
21
|
+
const P2 = new Array<number>(histogram.length); // accumulative normalized histogram
|
|
22
|
+
|
|
23
|
+
// Entropy Variables
|
|
24
|
+
let threshold1 = 0;
|
|
25
|
+
let threshold2 = 0;
|
|
26
|
+
let threshold3 = 0;
|
|
27
|
+
let maxEnt1 = 0;
|
|
28
|
+
let maxEnt2 = 0;
|
|
29
|
+
let maxEnt3 = 0;
|
|
30
|
+
const alpha2 = 0.5;
|
|
31
|
+
const term2 = 1 / (1 - alpha2);
|
|
32
|
+
const alpha3 = 2;
|
|
33
|
+
const term3 = 1 / (1 - alpha3);
|
|
34
|
+
|
|
35
|
+
for (let ih = 0; ih < histogram.length; ih++) {
|
|
36
|
+
normHisto[ih] = histogram[ih] / total;
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
P1[0] = normHisto[0];
|
|
40
|
+
P2[0] = 1 - P1[0];
|
|
41
|
+
for (let ih = 1; ih < histogram.length; ih++) {
|
|
42
|
+
P1[ih] = P1[ih - 1] + normHisto[ih];
|
|
43
|
+
P2[ih] = 1 - P1[ih];
|
|
44
|
+
}
|
|
45
|
+
|
|
46
|
+
/* Determine the first non-zero bin */
|
|
47
|
+
firstBin = 0;
|
|
48
|
+
for (let ih = 0; ih < histogram.length; ih++) {
|
|
49
|
+
if (Math.abs(P1[ih]) >= Number.EPSILON) {
|
|
50
|
+
firstBin = ih;
|
|
51
|
+
break;
|
|
52
|
+
}
|
|
53
|
+
}
|
|
54
|
+
|
|
55
|
+
/* Determine the last non-zero bin */
|
|
56
|
+
lastBin = histogram.length - 1;
|
|
57
|
+
for (let ih = histogram.length - 1; ih >= firstBin; ih--) {
|
|
58
|
+
if (Math.abs(P2[ih]) >= Number.EPSILON) {
|
|
59
|
+
lastBin = ih;
|
|
60
|
+
break;
|
|
61
|
+
}
|
|
62
|
+
}
|
|
63
|
+
|
|
64
|
+
/* Maximum Entropy Thresholding - BEGIN */
|
|
65
|
+
/* ALPHA = 1.0 */
|
|
66
|
+
/* Calculate the total entropy each gray-level
|
|
67
|
+
and find the threshold that maximizes it
|
|
68
|
+
*/
|
|
69
|
+
for (let it = firstBin; it <= lastBin; it++) {
|
|
70
|
+
/* Entropy of the background pixels */
|
|
71
|
+
let entBack1 = 0;
|
|
72
|
+
let entBack2 = 0;
|
|
73
|
+
let entBack3 = 0;
|
|
74
|
+
for (let ih = 0; ih <= it; ih++) {
|
|
75
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if (histogram[ih] !== 0) {
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entBack1 -= (normHisto[ih] / P1[it]) * Math.log(normHisto[ih] / P1[it]);
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}
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entBack2 += Math.sqrt(normHisto[ih] / P1[it]);
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entBack3 += (normHisto[ih] * normHisto[ih]) / (P1[it] * P1[it]);
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}
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+
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/* Entropy of the object pixels */
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let entObj1 = 0;
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let entObj2 = 0;
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let entObj3 = 0;
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for (let ih = it + 1; ih < histogram.length; ih++) {
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if (histogram[ih] !== 0) {
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entObj1 -= (normHisto[ih] / P2[it]) * Math.log(normHisto[ih] / P2[it]);
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+
}
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90
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+
entObj2 += Math.sqrt(normHisto[ih] / P2[it]);
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entObj3 += (normHisto[ih] * normHisto[ih]) / (P2[it] * P2[it]);
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+
}
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+
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/* Total entropy */
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95
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+
const totEnt1 = entBack1 + entObj1;
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96
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+
const totEnt2 =
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term2 * (entBack2 * entObj2 > 0 ? Math.log(entBack2 * entObj2) : 0);
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98
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+
const totEnt3 =
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+
term3 * (entBack3 * entObj3 > 0 ? Math.log(entBack3 * entObj3) : 0);
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+
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if (totEnt1 > maxEnt1) {
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maxEnt1 = totEnt1;
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threshold1 = it;
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+
}
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+
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+
if (totEnt2 > maxEnt2) {
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maxEnt2 = totEnt2;
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+
threshold2 = it;
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+
}
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+
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+
if (totEnt3 > maxEnt3) {
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+
maxEnt3 = totEnt3;
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+
threshold3 = it;
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+
}
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+
}
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116
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+
/* End Maximum Entropy Thresholding */
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+
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118
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+
const tStars = new Uint32Array([threshold1, threshold2, threshold3]);
|
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+
tStars.sort();
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+
|
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121
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+
let betas;
|
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+
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+
/* Adjust beta values */
|
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+
if (Math.abs(tStars[0] - tStars[1]) <= 5) {
|
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+
if (Math.abs(tStars[1] - tStars[2]) <= 5) {
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126
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+
betas = [1, 2, 1];
|
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127
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+
} else {
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+
betas = [0, 1, 3];
|
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+
}
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+
} else if (Math.abs(tStars[1] - tStars[2]) <= 5) {
|
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|
+
betas = [3, 1, 0];
|
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+
} else {
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+
betas = [1, 2, 1];
|
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134
|
+
}
|
|
135
|
+
|
|
136
|
+
/* Determine the optimal threshold value */
|
|
137
|
+
const omega = P1[tStars[2]] - P1[tStars[0]];
|
|
138
|
+
const optThreshold = Math.round(
|
|
139
|
+
tStars[0] * (P1[tStars[0]] + 0.25 * omega * betas[0]) +
|
|
140
|
+
0.25 * tStars[1] * omega * betas[1] +
|
|
141
|
+
tStars[2] * (P2[tStars[2]] + 0.25 * omega * betas[2]),
|
|
142
|
+
);
|
|
143
|
+
|
|
144
|
+
return optThreshold;
|
|
145
|
+
}
|
|
@@ -0,0 +1,80 @@
|
|
|
1
|
+
// see https://github.com/fiji/Auto_Threshold/blob/master/src/main/java/fiji/threshold/Auto_Threshold.java
|
|
2
|
+
// Shanhbag A.G. (1994) "Utilization of Information Measure as a Means of
|
|
3
|
+
// Image Thresholding" Graphical Models and Image Processing, 56(5): 414-419
|
|
4
|
+
// Ported to ImageJ plugin by G.Landini from E Celebi's fourier_0.8 routines
|
|
5
|
+
|
|
6
|
+
/**
|
|
7
|
+
* Return a threshold for a histogram using Shanbhag algorithm.
|
|
8
|
+
* @param histogram - The image histogram.
|
|
9
|
+
* @param total - Total number of pixels of the image.
|
|
10
|
+
* @returns The threshold.
|
|
11
|
+
*/
|
|
12
|
+
export default function shanbhag(histogram: Uint32Array, total: number) {
|
|
13
|
+
const normHisto = new Array<number>(histogram.length); // normalized histogram
|
|
14
|
+
for (let ih = 0; ih < histogram.length; ih++) {
|
|
15
|
+
normHisto[ih] = histogram[ih] / total;
|
|
16
|
+
}
|
|
17
|
+
|
|
18
|
+
const P1 = new Array<number>(histogram.length); // cumulative normalized histogram
|
|
19
|
+
const P2 = new Array<number>(histogram.length);
|
|
20
|
+
P1[0] = normHisto[0];
|
|
21
|
+
P2[0] = 1 - P1[0];
|
|
22
|
+
for (let ih = 1; ih < histogram.length; ih++) {
|
|
23
|
+
P1[ih] = P1[ih - 1] + normHisto[ih];
|
|
24
|
+
P2[ih] = 1 - P1[ih];
|
|
25
|
+
}
|
|
26
|
+
|
|
27
|
+
/* Determine the first non-zero bin */
|
|
28
|
+
let firstBin = 0;
|
|
29
|
+
for (let ih = 0; ih < histogram.length; ih++) {
|
|
30
|
+
if (Math.abs(P1[ih]) >= Number.EPSILON) {
|
|
31
|
+
firstBin = ih;
|
|
32
|
+
break;
|
|
33
|
+
}
|
|
34
|
+
}
|
|
35
|
+
|
|
36
|
+
/* Determine the last non-zero bin */
|
|
37
|
+
let lastBin = histogram.length - 1;
|
|
38
|
+
for (let ih = histogram.length - 1; ih >= firstBin; ih--) {
|
|
39
|
+
if (Math.abs(P2[ih]) >= Number.EPSILON) {
|
|
40
|
+
lastBin = ih;
|
|
41
|
+
break;
|
|
42
|
+
}
|
|
43
|
+
}
|
|
44
|
+
|
|
45
|
+
// Calculate the total entropy each gray-level
|
|
46
|
+
// and find the threshold that maximizes it
|
|
47
|
+
let threshold = -1;
|
|
48
|
+
let minEnt = Number.MAX_VALUE; // min entropy
|
|
49
|
+
|
|
50
|
+
let term;
|
|
51
|
+
let totEnt; // total entropy
|
|
52
|
+
let entBack; // entropy of the background pixels at a given threshold
|
|
53
|
+
let entObj; // entropy of the object pixels at a given threshold
|
|
54
|
+
for (let it = firstBin; it <= lastBin; it++) {
|
|
55
|
+
/* Entropy of the background pixels */
|
|
56
|
+
entBack = 0;
|
|
57
|
+
term = 0.5 / P1[it];
|
|
58
|
+
for (let ih = 1; ih <= it; ih++) {
|
|
59
|
+
entBack -= normHisto[ih] * Math.log(1 - term * P1[ih - 1]);
|
|
60
|
+
}
|
|
61
|
+
entBack *= term;
|
|
62
|
+
|
|
63
|
+
/* Entropy of the object pixels */
|
|
64
|
+
entObj = 0;
|
|
65
|
+
term = 0.5 / P2[it];
|
|
66
|
+
for (let ih = it + 1; ih < histogram.length; ih++) {
|
|
67
|
+
entObj -= normHisto[ih] * Math.log(1 - term * P2[ih]);
|
|
68
|
+
}
|
|
69
|
+
entObj *= term;
|
|
70
|
+
|
|
71
|
+
/* Total entropy */
|
|
72
|
+
totEnt = Math.abs(entBack - entObj);
|
|
73
|
+
|
|
74
|
+
if (totEnt < minEnt) {
|
|
75
|
+
minEnt = totEnt;
|
|
76
|
+
threshold = it;
|
|
77
|
+
}
|
|
78
|
+
}
|
|
79
|
+
return threshold;
|
|
80
|
+
}
|
|
@@ -4,7 +4,13 @@
|
|
|
4
4
|
// Journal of Histochemistry and Cytochemistry 25 (7), pp. 741-753
|
|
5
5
|
//
|
|
6
6
|
// modified from Johannes Schindelin plugin
|
|
7
|
-
|
|
7
|
+
|
|
8
|
+
/**
|
|
9
|
+
* Return a threshold for a histogram using Triangle algorithm.
|
|
10
|
+
* @param histogram - The image histogram.
|
|
11
|
+
* @returns The threshold.
|
|
12
|
+
*/
|
|
13
|
+
export function triangle(histogram: Uint32Array): number {
|
|
8
14
|
// find min and max
|
|
9
15
|
let min = 0;
|
|
10
16
|
let dmax = 0;
|
|
@@ -73,7 +79,7 @@ export function triangle(histogram: number[]): number {
|
|
|
73
79
|
// nx is just the max frequency as the other point has freq=0
|
|
74
80
|
nx = histogram[max]; // -min; // data[min]; // lowest value bmin = (p=0)% in the image
|
|
75
81
|
ny = min - max;
|
|
76
|
-
d = Math.
|
|
82
|
+
d = Math.hypot(nx, ny);
|
|
77
83
|
nx /= d;
|
|
78
84
|
ny /= d;
|
|
79
85
|
d = nx * min + ny * histogram[min];
|
|
@@ -0,0 +1,59 @@
|
|
|
1
|
+
// see https://github.com/fiji/Auto_Threshold/blob/master/src/main/java/fiji/threshold/Auto_Threshold.java
|
|
2
|
+
// Implements Yen thresholding method
|
|
3
|
+
// 1) Yen J.C., Chang F.J., and Chang S. (1995) "A New Criterion
|
|
4
|
+
// for Automatic Multilevel Thresholding" IEEE Trans. on Image
|
|
5
|
+
// Processing, 4(3): 370-378
|
|
6
|
+
// 2) Sezgin M. and Sankur B. (2004) "Survey over Image Thresholding
|
|
7
|
+
// Techniques and Quantitative Performance Evaluation" Journal of
|
|
8
|
+
// Electronic Imaging, 13(1): 146-165
|
|
9
|
+
// http://citeseer.ist.psu.edu/sezgin04survey.html
|
|
10
|
+
//
|
|
11
|
+
// M. Emre Celebi
|
|
12
|
+
// 06.15.2007
|
|
13
|
+
// Ported to ImageJ plugin by G.Landini from E Celebi's fourier_0.8 routines
|
|
14
|
+
|
|
15
|
+
/**
|
|
16
|
+
* Return a threshold for a histogram using Yen algorithm.
|
|
17
|
+
* @param histogram - The image histogram.
|
|
18
|
+
* @param total - Total number of pixels of the image.
|
|
19
|
+
* @returns The threshold.
|
|
20
|
+
*/
|
|
21
|
+
export default function yen(histogram: Uint32Array, total: number): number {
|
|
22
|
+
const normHisto = new Array<number>(histogram.length); // normalized histogram
|
|
23
|
+
for (let ih = 0; ih < histogram.length; ih++) {
|
|
24
|
+
normHisto[ih] = histogram[ih] / total;
|
|
25
|
+
}
|
|
26
|
+
|
|
27
|
+
const P1 = new Array<number>(histogram.length); // cumulative normalized histogram
|
|
28
|
+
P1[0] = normHisto[0];
|
|
29
|
+
for (let ih = 1; ih < histogram.length; ih++) {
|
|
30
|
+
P1[ih] = P1[ih - 1] + normHisto[ih];
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
const P1Sq = new Array<number>(histogram.length);
|
|
34
|
+
P1Sq[0] = normHisto[0] * normHisto[0];
|
|
35
|
+
for (let ih = 1; ih < histogram.length; ih++) {
|
|
36
|
+
P1Sq[ih] = P1Sq[ih - 1] + normHisto[ih] * normHisto[ih];
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
const P2Sq = new Array<number>(histogram.length);
|
|
40
|
+
P2Sq[histogram.length - 1] = 0;
|
|
41
|
+
for (let ih = histogram.length - 2; ih >= 0; ih--) {
|
|
42
|
+
P2Sq[ih] = P2Sq[ih + 1] + normHisto[ih + 1] * normHisto[ih + 1];
|
|
43
|
+
}
|
|
44
|
+
|
|
45
|
+
/* Find the threshold that maximizes the criterion */
|
|
46
|
+
let threshold = -1;
|
|
47
|
+
let maxCrit = Number.MIN_VALUE;
|
|
48
|
+
let crit;
|
|
49
|
+
for (let it = 0; it < histogram.length; it++) {
|
|
50
|
+
crit =
|
|
51
|
+
-1 * (P1Sq[it] * P2Sq[it] > 0 ? Math.log(P1Sq[it] * P2Sq[it]) : 0) +
|
|
52
|
+
2 * (P1[it] * (1 - P1[it]) > 0 ? Math.log(P1[it] * (1 - P1[it])) : 0);
|
|
53
|
+
if (crit > maxCrit) {
|
|
54
|
+
maxCrit = crit;
|
|
55
|
+
threshold = it;
|
|
56
|
+
}
|
|
57
|
+
}
|
|
58
|
+
return threshold;
|
|
59
|
+
}
|
|
@@ -0,0 +1,29 @@
|
|
|
1
|
+
import type { Point } from '../utils/geometry/points.js';
|
|
2
|
+
|
|
3
|
+
/**
|
|
4
|
+
* Rotate a point around a center by a given angle.
|
|
5
|
+
* @param point - The point to rotate
|
|
6
|
+
* @param rotationCenter - The center of rotation
|
|
7
|
+
* @param angle - The angle of rotation in radians
|
|
8
|
+
* @returns The rotated point
|
|
9
|
+
*/
|
|
10
|
+
export function rotatePoint(
|
|
11
|
+
point: Point,
|
|
12
|
+
rotationCenter: Point,
|
|
13
|
+
angle: number,
|
|
14
|
+
): Point {
|
|
15
|
+
const angleCos = Math.cos(angle);
|
|
16
|
+
const angleSin = Math.sin(angle);
|
|
17
|
+
|
|
18
|
+
const column =
|
|
19
|
+
point.column * angleCos -
|
|
20
|
+
point.row * angleSin +
|
|
21
|
+
(1 - angleCos) * rotationCenter.column +
|
|
22
|
+
rotationCenter.row * angleSin;
|
|
23
|
+
const row =
|
|
24
|
+
point.column * angleSin +
|
|
25
|
+
point.row * angleCos +
|
|
26
|
+
(1 - angleCos) * rotationCenter.row -
|
|
27
|
+
rotationCenter.column * angleSin;
|
|
28
|
+
return { column, row };
|
|
29
|
+
}
|