image-js 0.0.0-next-e30968a2d8

package/lib-esm/utils/interpolateBorder.js

@@ -0,0 +1,134 @@
+export var BorderType;
+(function (BorderType) {
+    BorderType["CONSTANT"] = "CONSTANT";
+    BorderType["REPLICATE"] = "REPLICATE";
+    BorderType["REFLECT"] = "REFLECT";
+    BorderType["WRAP"] = "WRAP";
+    BorderType["REFLECT_101"] = "REFLECT_101";
+})(BorderType || (BorderType = {}));
+/**
+ * Pick the border interpolation algorithm.
+ * The different algorithms are illustrated here:
+ * https://vovkos.github.io/doxyrest-showcase/opencv/sphinx_rtd_theme/enum_cv_BorderTypes.html
+ *
+ * @param type
+ * @param value
+ */
+export function getBorderInterpolation(type, value) {
+    switch (type) {
+        case BorderType.CONSTANT:
+            return getInterpolateConstant(value);
+        case BorderType.REPLICATE:
+            return interpolateReplicate;
+        case BorderType.REFLECT:
+            return interpolateReflect;
+        case BorderType.REFLECT_101:
+            return interpolateReflect101;
+        case BorderType.WRAP:
+            return interpolateWrap;
+        default:
+            throw new Error(`interpolateBorder cannot be used with border type ${type}`);
+    }
+}
+function checkRange(point, length) {
+    if (point <= 0 - length || point >= length + length - 1) {
+        throw new RangeError('interpolateBorder only supports borders smaller than the original image');
+    }
+}
+function getInterpolateConstant(value) {
+    return function interpolateConstant(column, row, channel, image) {
+        const newX = interpolateConstantPoint(column, image.width);
+        const newY = interpolateConstantPoint(row, image.height);
+        if (newX === -1 || newY === -1) {
+            return value;
+        }
+        return image.getValue(newY, newX, channel);
+    };
+}
+/**
+ * @param point
+ * @param length
+ */
+export function interpolateConstantPoint(point, length) {
+    if (point >= 0 && point < length) {
+        return point;
+    }
+    return -1;
+}
+function interpolateReplicate(column, row, channel, image) {
+    return image.getValue(interpolateReplicatePoint(row, image.height), interpolateReplicatePoint(column, image.width), channel);
+}
+/**
+ * @param point
+ * @param length
+ */
+export function interpolateReplicatePoint(point, length) {
+    if (point >= 0 && point < length) {
+        return point;
+    }
+    checkRange(point, length);
+    if (point < 0) {
+        return 0;
+    }
+    else {
+        return length - 1;
+    }
+}
+function interpolateReflect(column, row, channel, image) {
+    return image.getValue(interpolateReflectPoint(row, image.height), interpolateReflectPoint(column, image.width), channel);
+}
+/**
+ * @param point
+ * @param length
+ */
+export function interpolateReflectPoint(point, length) {
+    if (point >= 0 && point < length) {
+        return point;
+    }
+    checkRange(point, length);
+    if (point < 0) {
+        return -1 - point;
+    }
+    else {
+        return length + length - 1 - point;
+    }
+}
+function interpolateWrap(column, row, channel, image) {
+    return image.getValue(interpolateWrapPoint(row, image.height), interpolateWrapPoint(column, image.width), channel);
+}
+/**
+ * @param point
+ * @param length
+ */
+export function interpolateWrapPoint(point, length) {
+    if (point >= 0 && point < length) {
+        return point;
+    }
+    checkRange(point, length);
+    if (point < 0) {
+        return length + point;
+    }
+    else {
+        return point - length;
+    }
+}
+function interpolateReflect101(column, row, channel, image) {
+    return image.getValue(interpolateReflect101Point(row, image.height), interpolateReflect101Point(column, image.width), channel);
+}
+/**
+ * @param point
+ * @param length
+ */
+export function interpolateReflect101Point(point, length) {
+    if (point >= 0 && point < length) {
+        return point;
+    }
+    checkRange(point, length);
+    if (point < 0) {
+        return 0 - point;
+    }
+    else {
+        return length + length - 2 - point;
+    }
+}
+//# sourceMappingURL=interpolateBorder.js.map

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package/lib-esm/utils/interpolatePixel.d.ts

@@ -0,0 +1,18 @@
+import { IJS } from '../IJS';
+import { ClampFunction } from './clamp';
+import { BorderInterpolationFunction } from './interpolateBorder';
+export declare enum InterpolationType {
+    NEAREST = "NEAREST",
+    BILINEAR = "BILINEAR",
+    BICUBIC = "BICUBIC"
+}
+declare type InterpolationFunction = (image: IJS, column: number, row: number, channel: number, intepolateBorder: BorderInterpolationFunction, clamp: ClampFunction) => number;
+/**
+ * Get the interpolation function based on its name.
+ *
+ * @param interpolationType - Specified interpolation type.
+ * @returns The interpolation function.
+ */
+export declare function getInterpolationFunction(interpolationType: InterpolationType): InterpolationFunction;
+export {};
+//# sourceMappingURL=interpolatePixel.d.ts.map

package/lib-esm/utils/interpolatePixel.d.ts.map

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package/lib-esm/utils/interpolatePixel.js

@@ -0,0 +1,118 @@
+import { round } from './round';
+export var InterpolationType;
+(function (InterpolationType) {
+    InterpolationType["NEAREST"] = "NEAREST";
+    InterpolationType["BILINEAR"] = "BILINEAR";
+    InterpolationType["BICUBIC"] = "BICUBIC";
+})(InterpolationType || (InterpolationType = {}));
+/**
+ * Get the interpolation function based on its name.
+ *
+ * @param interpolationType - Specified interpolation type.
+ * @returns The interpolation function.
+ */
+export function getInterpolationFunction(interpolationType) {
+    switch (interpolationType) {
+        case InterpolationType.NEAREST: {
+            return interpolateNearest;
+        }
+        case InterpolationType.BILINEAR: {
+            return interpolateBilinear;
+        }
+        case InterpolationType.BICUBIC: {
+            return interpolateBicubic;
+        }
+        default: {
+            throw new Error(`interpolation ${interpolationType} not implemented`);
+        }
+    }
+}
+/**
+ * @param image - The image to interpolate.
+ * @param column - Column index.
+ * @param row - Row index.
+ * @param channel - Channel index.
+ * @param interpolateBorder
+ */
+function interpolateNearest(image, column, row, channel, interpolateBorder) {
+    column = Math.round(column);
+    row = Math.round(row);
+    return interpolateBorder(column, row, channel, image);
+}
+/**
+ * @param image
+ * @param column - Column index.
+ * @param row - Row index.
+ * @param channel - Channel index.
+ * @param interpolateBorder
+ */
+function interpolateBilinear(image, column, row, channel, interpolateBorder) {
+    const px0 = Math.floor(column);
+    const py0 = Math.floor(row);
+    if (px0 === column && py0 === row) {
+        return interpolateBorder(px0, py0, channel, image);
+    }
+    const px1 = px0 + 1;
+    const py1 = py0 + 1;
+    const vx0y0 = interpolateBorder(px0, py0, channel, image);
+    const vx1y0 = interpolateBorder(px1, py0, channel, image);
+    const vx0y1 = interpolateBorder(px0, py1, channel, image);
+    const vx1y1 = interpolateBorder(px1, py1, channel, image);
+    const r1 = (px1 - column) * vx0y0 + (column - px0) * vx1y0;
+    const r2 = (px1 - column) * vx0y1 + (column - px0) * vx1y1;
+    return round((py1 - row) * r1 + (row - py0) * r2);
+}
+/**
+ * @param image
+ * @param column - Column index.
+ * @param row - Row index.
+ * @param channel - Channel index.
+ * @param interpolateBorder
+ * @param clamp
+ */
+function interpolateBicubic(image, column, row, channel, interpolateBorder, clamp) {
+    const px1 = Math.floor(column);
+    const py1 = Math.floor(row);
+    if (px1 === column && py1 === row) {
+        return interpolateBorder(px1, py1, channel, image);
+    }
+    const xNorm = column - px1;
+    const yNorm = row - py1;
+    const vx0y0 = interpolateBorder(px1 - 1, py1 - 1, channel, image);
+    const vx1y0 = interpolateBorder(px1, py1 - 1, channel, image);
+    const vx2y0 = interpolateBorder(px1 + 1, py1 - 1, channel, image);
+    const vx3y0 = interpolateBorder(px1 + 2, py1 - 1, channel, image);
+    const v0 = cubic(vx0y0, vx1y0, vx2y0, vx3y0, xNorm);
+    const vx0y1 = interpolateBorder(px1 - 1, py1, channel, image);
+    const vx1y1 = interpolateBorder(px1, py1, channel, image);
+    const vx2y1 = interpolateBorder(px1 + 1, py1, channel, image);
+    const vx3y1 = interpolateBorder(px1 + 2, py1, channel, image);
+    const v1 = cubic(vx0y1, vx1y1, vx2y1, vx3y1, xNorm);
+    const vx0y2 = interpolateBorder(px1 - 1, py1 + 1, channel, image);
+    const vx1y2 = interpolateBorder(px1, py1 + 1, channel, image);
+    const vx2y2 = interpolateBorder(px1 + 1, py1 + 1, channel, image);
+    const vx3y2 = interpolateBorder(px1 + 2, py1 + 1, channel, image);
+    const v2 = cubic(vx0y2, vx1y2, vx2y2, vx3y2, xNorm);
+    const vx0y3 = interpolateBorder(px1 - 1, py1 + 2, channel, image);
+    const vx1y3 = interpolateBorder(px1, py1 + 2, channel, image);
+    const vx2y3 = interpolateBorder(px1 + 1, py1 + 2, channel, image);
+    const vx3y3 = interpolateBorder(px1 + 2, py1 + 2, channel, image);
+    const v3 = cubic(vx0y3, vx1y3, vx2y3, vx3y3, xNorm);
+    return round(clamp(cubic(v0, v1, v2, v3, yNorm)));
+}
+/**
+ * @param a
+ * @param b
+ * @param c
+ * @param d
+ * @param x
+ */
+function cubic(a, b, c, d, x) {
+    return (b +
+        0.5 *
+            x *
+            (c -
+                a +
+                x * (2.0 * a - 5.0 * b + 4.0 * c - d + x * (3.0 * (b - c) + d - a))));
+}
+//# sourceMappingURL=interpolatePixel.js.map

package/lib-esm/utils/interpolatePixel.js.map

@@ -0,0 +1 @@
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package/lib-esm/utils/kernels.d.ts

@@ -0,0 +1,13 @@
+export declare const DISCRETE_LAPLACE_4: number[][];
+export declare const DISCRETE_LAPLACE_8: number[][];
+export declare const SOBEL_X: number[][];
+export declare const SOBEL_Y: number[][];
+export declare const SCHARR_X: number[][];
+export declare const SCHARR_Y: number[][];
+export declare const PREWITT_X: number[][];
+export declare const PREWITT_Y: number[][];
+export declare const ROBERTS_X: number[][];
+export declare const ROBERTS_Y: number[][];
+export declare const SECOND_DERIVATIVE: number[][];
+export declare const SECOND_DERIVATIVE_INV: number[][];
+//# sourceMappingURL=kernels.d.ts.map

package/lib-esm/utils/kernels.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"kernels.d.ts","sourceRoot":"","sources":["../../src/utils/kernels.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,kBAAkB,YAI9B,CAAC;AAEF,eAAO,MAAM,kBAAkB,YAI9B,CAAC;AAEF,eAAO,MAAM,OAAO,YAInB,CAAC;AAEF,eAAO,MAAM,OAAO,YAInB,CAAC;AAEF,eAAO,MAAM,QAAQ,YAIpB,CAAC;AAEF,eAAO,MAAM,QAAQ,YAIpB,CAAC;AAEF,eAAO,MAAM,SAAS,YAIrB,CAAC;AAEF,eAAO,MAAM,SAAS,YAIrB,CAAC;AAEF,eAAO,MAAM,SAAS,YAGrB,CAAC;AAEF,eAAO,MAAM,SAAS,YAGrB,CAAC;AAEF,eAAO,MAAM,iBAAiB,YAM7B,CAAC;AAEF,eAAO,MAAM,qBAAqB,YAMjC,CAAC"}

package/lib-esm/utils/kernels.js

@@ -0,0 +1,63 @@
+export const DISCRETE_LAPLACE_4 = [
+    [0, 1, 0],
+    [1, -4, 1],
+    [0, 1, 0],
+];
+export const DISCRETE_LAPLACE_8 = [
+    [1, 1, 1],
+    [1, -8, 1],
+    [1, 1, 1],
+];
+export const SOBEL_X = [
+    [-1, 0, +1],
+    [-2, 0, +2],
+    [-1, 0, +1],
+];
+export const SOBEL_Y = [
+    [-1, -2, -1],
+    [0, 0, 0],
+    [+1, +2, +1],
+];
+export const SCHARR_X = [
+    [3, 0, -3],
+    [10, 0, -10],
+    [3, 0, -3],
+];
+export const SCHARR_Y = [
+    [3, 10, 3],
+    [0, 0, 0],
+    [-3, -10, -3],
+];
+export const PREWITT_X = [
+    [1, 0, -1],
+    [1, 0, -1],
+    [1, 0, -1],
+];
+export const PREWITT_Y = [
+    [1, 1, 1],
+    [0, 0, 0],
+    [-1, -1, -1],
+];
+export const ROBERTS_X = [
+    [0, 1],
+    [-1, 0],
+];
+export const ROBERTS_Y = [
+    [1, 0],
+    [0, -1],
+];
+export const SECOND_DERIVATIVE = [
+    [-1, -2, 0, 2, 1],
+    [-2, -4, 0, 4, 2],
+    [0, 0, 0, 0, 0],
+    [1, 2, 0, -2, -1],
+    [2, 4, 0, -4, -2],
+];
+export const SECOND_DERIVATIVE_INV = [
+    [1, 2, 0, -2, -1],
+    [2, 4, 0, -4, -2],
+    [0, 0, 0, 0, 0],
+    [-2, -4, 0, 4, 2],
+    [-1, -2, 0, 2, 1],
+];
+//# sourceMappingURL=kernels.js.map

package/lib-esm/utils/kernels.js.map

@@ -0,0 +1 @@
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package/lib-esm/utils/kinds.d.ts

@@ -0,0 +1,9 @@
+interface ColorModelDefinitions {
+    [key: string]: {
+        channels: number;
+        alpha: boolean;
+    };
+}
+export declare const colorModelDefinitions: ColorModelDefinitions;
+export {};
+//# sourceMappingURL=kinds.d.ts.map

package/lib-esm/utils/kinds.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"kinds.d.ts","sourceRoot":"","sources":["../../src/utils/kinds.ts"],"names":[],"mappings":"AAEA,UAAU,qBAAqB;IAC7B,CAAC,GAAG,EAAE,MAAM,GAAG;QACb,QAAQ,EAAE,MAAM,CAAC;QACjB,KAAK,EAAE,OAAO,CAAC;KAChB,CAAC;CACH;AAED,eAAO,MAAM,qBAAqB,EAAE,qBAiBnC,CAAC"}

package/lib-esm/utils/kinds.js

@@ -0,0 +1,20 @@
+import { ImageColorModel } from '../IJS';
+export const colorModelDefinitions = {
+    [ImageColorModel.GREY]: {
+        channels: 1,
+        alpha: false,
+    },
+    [ImageColorModel.GREYA]: {
+        channels: 2,
+        alpha: true,
+    },
+    [ImageColorModel.RGB]: {
+        channels: 3,
+        alpha: false,
+    },
+    [ImageColorModel.RGBA]: {
+        channels: 4,
+        alpha: true,
+    },
+};
+//# sourceMappingURL=kinds.js.map

package/lib-esm/utils/kinds.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"kinds.js","sourceRoot":"","sources":["../../src/utils/kinds.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,QAAQ,CAAC;AASzC,MAAM,CAAC,MAAM,qBAAqB,GAA0B;IAC1D,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE;QACtB,QAAQ,EAAE,CAAC;QACX,KAAK,EAAE,KAAK;KACb;IACD,CAAC,eAAe,CAAC,KAAK,CAAC,EAAE;QACvB,QAAQ,EAAE,CAAC;QACX,KAAK,EAAE,IAAI;KACZ;IACD,CAAC,eAAe,CAAC,GAAG,CAAC,EAAE;QACrB,QAAQ,EAAE,CAAC;QACX,KAAK,EAAE,KAAK;KACb;IACD,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE;QACtB,QAAQ,EAAE,CAAC;QACX,KAAK,EAAE,IAAI;KACZ;CACF,CAAC"}

package/lib-esm/utils/round.d.ts

@@ -0,0 +1,2 @@
+export declare function round(value: number): number;
+//# sourceMappingURL=round.d.ts.map

package/lib-esm/utils/round.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"round.d.ts","sourceRoot":"","sources":["../../src/utils/round.ts"],"names":[],"mappings":"AAAA,wBAAgB,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAK3C"}

package/lib-esm/utils/round.js

@@ -0,0 +1,7 @@
+export function round(value) {
+    if (value % 0.5 !== 0) {
+        return Math.round(value);
+    }
+    return Math.floor(value) % 2 === 0 ? Math.floor(value) : Math.ceil(value);
+}
+//# sourceMappingURL=round.js.map

package/lib-esm/utils/round.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"round.js","sourceRoot":"","sources":["../../src/utils/round.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,IAAI,KAAK,GAAG,GAAG,KAAK,CAAC,EAAE;QACrB,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AAC5E,CAAC"}

package/lib-esm/utils/validators.d.ts

@@ -0,0 +1,23 @@
+import { IJS } from '../IJS';
+/**
+ * Validate an array of channels.
+ *
+ * @param channels - Array of channels.
+ * @param image - The image being processed
+ */
+export declare function validateChannels(channels: number[], image: IJS): void;
+/**
+ * Validates that a channel index passed by the user is within range and is an integer.
+ *
+ * @param channel - Channel index to validate.
+ * @param image - The image being processed.
+ */
+export declare function validateChannel(channel: number, image: IJS): void;
+/**
+ * Validates that a value passed by the user is within range and is an integer.
+ *
+ * @param value - Value to validate.
+ * @param image - Image from which the value comes.
+ */
+export declare function validateValue(value: number, image: IJS): void;
+//# sourceMappingURL=validators.d.ts.map

package/lib-esm/utils/validators.d.ts.map

@@ -0,0 +1 @@
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package/lib-esm/utils/validators.js

@@ -0,0 +1,34 @@
+/**
+ * Validate an array of channels.
+ *
+ * @param channels - Array of channels.
+ * @param image - The image being processed
+ */
+export function validateChannels(channels, image) {
+    for (const channel of channels) {
+        validateChannel(channel, image);
+    }
+}
+/**
+ * Validates that a channel index passed by the user is within range and is an integer.
+ *
+ * @param channel - Channel index to validate.
+ * @param image - The image being processed.
+ */
+export function validateChannel(channel, image) {
+    if (!Number.isInteger(channel) || channel >= image.channels || channel < 0) {
+        throw new RangeError(`invalid channel: ${channel}. It must be a positive integer smaller than ${image.channels}`);
+    }
+}
+/**
+ * Validates that a value passed by the user is within range and is an integer.
+ *
+ * @param value - Value to validate.
+ * @param image - Image from which the value comes.
+ */
+export function validateValue(value, image) {
+    if (!Number.isInteger(value) || value > image.maxValue || value < 0) {
+        throw new RangeError(`invalid value: ${value}. It must be a positive integer smaller than ${image.maxValue + 1}`);
+    }
+}
+//# sourceMappingURL=validators.js.map

package/lib-esm/utils/validators.js.map

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package/package.json

@@ -0,0 +1,79 @@
+{
+  "name": "image-js",
+  "version": "0.0.0-next-e30968a2d8",
+  "description": "Image processing and manipulation in JavaScript",
+  "keywords": [],
+  "author": "Michaël Zasso",
+  "license": "MIT",
+  "files": [
+    "src",
+    "lib",
+    "lib-esm"
+  ],
+  "exports": {
+    ".": {
+      "node": "./lib/index.js",
+      "default": "./lib-esm/index.js"
+    },
+    "./roi": {
+      "node": "./lib/roi/index.js",
+      "default": "./lib-esm/roi/index.js"
+    }
+  },
+  "scripts": {
+    "check-types": "tsc --noEmit",
+    "clean": "rimraf lib lib-esm",
+    "demo": "vite --open",
+    "eslint": "eslint src demo",
+    "eslint-fix": "npm run eslint -- --fix",
+    "prepack": "npm run tsc",
+    "prettier": "prettier --check src demo",
+    "prettier-write": "prettier --write src demo",
+    "test": "npm run test-only && npm run eslint && npm run prettier && npm run check-types",
+    "test-only": "jest",
+    "tsc": "npm run clean && npm run tsc-cjs && npm run tsc-esm",
+    "tsc-cjs": "tsc --project tsconfig.cjs.json",
+    "tsc-esm": "tsc --project tsconfig.esm.json"
+  },
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/image-js/image-js.git"
+  },
+  "bugs": {
+    "url": "https://github.com/image-js/image-js/issues"
+  },
+  "homepage": "https://github.com/image-js/image-js#readme",
+  "dependencies": {
+    "fast-png": "^6.1.0",
+    "image-type": "^4.1.0",
+    "jpeg-js": "^0.4.3",
+    "ml-convolution": "^2.0.0",
+    "ml-matrix": "^6.9.0",
+    "tiff": "^5.0.3"
+  },
+  "devDependencies": {
+    "@tailwindcss/forms": "^0.3.4",
+    "@types/jest": "^27.4.1",
+    "@types/react": "^17.0.43",
+    "@types/react-dom": "^17.0.14",
+    "@types/react-router-dom": "^5.3.3",
+    "@vitejs/plugin-react": "^1.3.0",
+    "autoprefixer": "^10.4.4",
+    "clsx": "^1.1.1",
+    "eslint": "^8.12.0",
+    "eslint-config-cheminfo-react": "^8.2.0",
+    "eslint-config-cheminfo-typescript": "^10.4.0",
+    "immer": "^9.0.12",
+    "jest": "^27.5.1",
+    "postcss": "^8.4.12",
+    "prettier": "^2.6.1",
+    "react": "^17.0.2",
+    "react-dom": "^17.0.2",
+    "react-router-dom": "^5.3.0",
+    "rimraf": "^3.0.2",
+    "tailwindcss": "^2.2.19",
+    "ts-jest": "^27.1.4",
+    "typescript": "^4.6.3",
+    "vite": "^2.9.1"
+  }
+}