igv 3.0.4 → 3.0.5

package/dist/igv.js

@@ -39611,6 +39611,10 @@
             if (this.featureMap[chr]) {
                 const match = `${chr}-${start}-${end}`;
                 this.featureMap[chr] = this.featureMap[chr].filter(feature => match !== `${feature.chr}-${feature.start}-${feature.end}`);
+                // Check if featureMap for a specific chromosome is empty now and delete it if yes
+                if (this.featureMap[chr].length === 0) {
+                    delete this.featureMap[chr];
+                }
             }
         }
     }
@@ -43058,7 +43062,7 @@
             const viewportsToRepaint = visibleViewports.filter(vp => vp.needsRepaint()).filter(viewport => viewport.checkZoomIn());
 
             // Get viewports that require a data load
-            const viewportsToReload = visibleViewports.filter(viewport => viewport.needsReload());
+            const viewportsToReload = visibleViewports.filter(viewport => viewport.checkZoomIn()).filter(viewport => viewport.needsReload());
 
             // Trigger viewport to load features needed to cover current genomic range
             // NOTE: these must be loaded synchronously, do not user Promise.all,  not all file readers are thread safe
@@ -70523,7 +70527,7 @@
         })
     }
 
-    const _version = "3.0.4";
+    const _version = "3.0.5";
     function version() {
         return _version
     }
@@ -72073,9 +72077,16 @@
                     '<hr/>',
                     {
                         label: 'Delete',
-                        click: () => {
-                            this.browser.roiManager.deleteRegionWithKey(regionElement.dataset.region, this.browser.columnContainer);
-                            this.browser.roiManager.repaintTable();
+                        click: async () => {
+                            roiSet.removeFeature(feature);
+                            const userDefinedFeatures = await roiSet.getAllFeatures();
+                            
+                            // Delete user defined ROI Set if it is empty
+                            if (Object.keys(userDefinedFeatures).length === 0) {
+                                roiManager.deleteUserDefinedROISet();
+                            }
+                            roiManager.deleteRegionWithKey(regionElement.dataset.region, columnContainer);
+                            roiManager.repaintTable();
                         }
                     }
                 );
@@ -72603,6 +72614,10 @@
             return this.roiSets.find(roiSet => true === roiSet.isUserDefined)
         }
 
+        deleteUserDefinedROISet(){
+            this.roiSets = this.roiSets.filter(roiSet => roiSet.isUserDefined !== true);
+        }
+        
         initializeUserDefinedROISet() {
 
             const config =
@@ -72618,15 +72633,8 @@
         }
 
         async deleteRegionWithKey(regionKey, columnContainer) {
-
             columnContainer.querySelectorAll(createSelector(regionKey)).forEach(node => node.remove());
 
-            const {feature, set} = await this.findRegionWithKey(regionKey);
-
-            if (set) {
-                set.removeFeature(feature);
-            }
-
             const records = await this.getTableRecords();
 
             if (0 === records.length) {
@@ -72636,23 +72644,6 @@
 
         }
 
-        async findRegionWithKey(regionKey) {
-
-            const {chr, start, end} = parseRegionKey(regionKey);
-
-            for (let set of this.roiSets) {
-                const features = await set.getFeatures(chr, start, end);
-
-                for (let feature of features) {
-                    if (feature.chr === chr && feature.start >= start && feature.end <= end) {
-                        return {feature, set}
-                    }
-                }
-            }
-
-            return {feature: undefined, set: undefined}
-        }
-
         toJSON() {
             return this.roiSets.map(roiSet => roiSet.toJSON())
         }