igv 3.0.4 → 3.0.5

package/dist/igv.esm.js

@@ -39605,6 +39605,10 @@ class DynamicFeatureSource {
         if (this.featureMap[chr]) {
             const match = `${chr}-${start}-${end}`;
             this.featureMap[chr] = this.featureMap[chr].filter(feature => match !== `${feature.chr}-${feature.start}-${feature.end}`);
+            // Check if featureMap for a specific chromosome is empty now and delete it if yes
+            if (this.featureMap[chr].length === 0) {
+                delete this.featureMap[chr];
+            }
         }
     }
 }
@@ -43052,7 +43056,7 @@ class TrackView {
         const viewportsToRepaint = visibleViewports.filter(vp => vp.needsRepaint()).filter(viewport => viewport.checkZoomIn());
 
         // Get viewports that require a data load
-        const viewportsToReload = visibleViewports.filter(viewport => viewport.needsReload());
+        const viewportsToReload = visibleViewports.filter(viewport => viewport.checkZoomIn()).filter(viewport => viewport.needsReload());
 
         // Trigger viewport to load features needed to cover current genomic range
         // NOTE: these must be loaded synchronously, do not user Promise.all,  not all file readers are thread safe
@@ -70517,7 +70521,7 @@ function createReferenceFrameList(loci, genome, browserFlanking, minimumBases, v
     })
 }
 
-const _version = "3.0.4";
+const _version = "3.0.5";
 function version() {
     return _version
 }
@@ -72067,9 +72071,16 @@ class ROIMenu {
                 '<hr/>',
                 {
                     label: 'Delete',
-                    click: () => {
-                        this.browser.roiManager.deleteRegionWithKey(regionElement.dataset.region, this.browser.columnContainer);
-                        this.browser.roiManager.repaintTable();
+                    click: async () => {
+                        roiSet.removeFeature(feature);
+                        const userDefinedFeatures = await roiSet.getAllFeatures();
+                        
+                        // Delete user defined ROI Set if it is empty
+                        if (Object.keys(userDefinedFeatures).length === 0) {
+                            roiManager.deleteUserDefinedROISet();
+                        }
+                        roiManager.deleteRegionWithKey(regionElement.dataset.region, columnContainer);
+                        roiManager.repaintTable();
                     }
                 }
             );
@@ -72597,6 +72608,10 @@ class ROIManager {
         return this.roiSets.find(roiSet => true === roiSet.isUserDefined)
     }
 
+    deleteUserDefinedROISet(){
+        this.roiSets = this.roiSets.filter(roiSet => roiSet.isUserDefined !== true);
+    }
+    
     initializeUserDefinedROISet() {
 
         const config =
@@ -72612,15 +72627,8 @@ class ROIManager {
     }
 
     async deleteRegionWithKey(regionKey, columnContainer) {
-
         columnContainer.querySelectorAll(createSelector(regionKey)).forEach(node => node.remove());
 
-        const {feature, set} = await this.findRegionWithKey(regionKey);
-
-        if (set) {
-            set.removeFeature(feature);
-        }
-
         const records = await this.getTableRecords();
 
         if (0 === records.length) {
@@ -72630,23 +72638,6 @@ class ROIManager {
 
     }
 
-    async findRegionWithKey(regionKey) {
-
-        const {chr, start, end} = parseRegionKey(regionKey);
-
-        for (let set of this.roiSets) {
-            const features = await set.getFeatures(chr, start, end);
-
-            for (let feature of features) {
-                if (feature.chr === chr && feature.start >= start && feature.end <= end) {
-                    return {feature, set}
-                }
-            }
-        }
-
-        return {feature: undefined, set: undefined}
-    }
-
     toJSON() {
         return this.roiSets.map(roiSet => roiSet.toJSON())
     }