icn3d 3.30.4 → 3.30.5

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Files changed (4) hide show
  1. package/icn3d.js +51 -51
  2. package/icn3d.min.js +3 -3
  3. package/icn3d.module.js +51 -51
  4. package/package.json +1 -1
package/icn3d.module.js CHANGED
@@ -12884,17 +12884,17 @@ class SetDialog {
12884
12884
 
12885
12885
  setTemplateMenu() { let me = this.icn3dui; me.icn3d;
12886
12886
  let group2tpl = {};
12887
- group2tpl['V'] = ['CD28_1yjdC_human_V', 'CD2_1hnfA_human_V-n1', 'CD8a_1cd8A_human_V', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'ICOS_6x4gA_human_V', 'LAG3_7tzgD_human_V-n1', 'PDL1_4z18B_human_V-n1', 'PD1_4zqkB_human_V', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V'];
12888
- group2tpl['C1'] = ['B2Microglobulin_7phrL_human_C1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-HEAVY_5esv_C1-n2', 'GHR_1axiB_human_FN3-n1', 'MHCIa_7phrH_human_C1', 'TCRa_6jxrm_human_C1-n2', 'VTCN1_Q7Z7D3_human_V-n2'];
12889
- group2tpl['C2'] = ['CD2_1hnfA_human_C2-n2', 'Contactin1_3s97C_human_C2-n2', 'LAG3_7tzgD_human_C2-n2', 'Siglec3_5j0bB_human_C2-n2'];
12890
- group2tpl['I'] = ['BTLA_2aw2A_human_Iset', 'CD19_6al5A_human_C2orV-n1', 'JAM1_1nbqA_human_VorIset-n2', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Unk-n152'];
12891
- group2tpl['E'] = ['ASF1A_2iijA_human', 'CoAtomerGamma1_1r4xA_human', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'IsdA_2iteA_bacteria', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'TEAD1_3kysC_human'];
12887
+ group2tpl['IgV'] = ['CD28_1yjdC_human_V', 'CD2_1hnfA_human_V-n1', 'CD8a_1cd8A_human_V', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'ICOS_6x4gA_human_V', 'LAG3_7tzgD_human_V-n1', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V'];
12888
+ group2tpl['IgC1'] = ['B2Microglobulin_7phrL_human_C1', 'CD3d_6jxrd_human_C1', 'CD3e_6jxrf_human_C1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-HEAVY_5esv_C1-n2', 'GHR_1axiB_human_C1-n1', 'LAG3_7tzgD_human_C1-n2', 'MHCIa_7phrH_human_C1', 'Siglec3_5j0bB_human_C1-n2', 'TCRa_6jxrm_human_C1-n2', 'VTCN1_Q7Z7D3_human_C1-n2'];
12889
+ group2tpl['IgC2'] = ['CD2_1hnfA_human_C2-n2', 'CD3g_6jxrg_human_C2'];
12890
+ group2tpl['IgI'] = ['BTLA_2aw2A_human_Iset', 'Contactin1_3s97C_human_Iset-n2', 'JAM1_1nbqA_human_Iset-n2', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Iset-n152'];
12891
+ group2tpl['IgE'] = ['CoAtomerGamma1_1r4xA_human', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'IsdA_2iteA_bacteria', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria'];
12892
12892
 
12893
- group2tpl['FN3'] = ['Contactin1_2ee2A_human_FN3-n9', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'Sidekick2_1wf5A_human_FN3-n7'];
12893
+ group2tpl['IgFN3'] = ['Contactin1_2ee2A_human_FN3-n9', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'Sidekick2_1wf5A_human_FN3-n7'];
12894
12894
 
12895
- group2tpl['FN3-like'] = ['BArrestin1_4jqiA_rat_n1', 'C3_2qkiD_human_n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2'];
12895
+ group2tpl['IgFN3-like'] = ['ASF1A_2iijA_human', 'BArrestin1_4jqiA_rat_n1', 'C3_2qkiD_human_n1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'TEAD1_3kysC_human'];
12896
12896
 
12897
- group2tpl['Other'] = ['CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'LaminAC_1ifrA_human', 'ORF7a_1xakA_virus'];
12897
+ group2tpl['Other Ig'] = ['CD19_6al5A_human-n1', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'LaminAC_1ifrA_human', 'ORF7a_1xakA_virus'];
12898
12898
 
12899
12899
  let tpl2strandsig = {};
12900
12900
  tpl2strandsig['ASF1A_2iijA_human'] = "A A' B C C' E F G G+";
@@ -12902,17 +12902,17 @@ class SetDialog {
12902
12902
  tpl2strandsig['BArrestin1_4jqiA_rat_n1'] = "A- A A' B C C' E F G";
12903
12903
  tpl2strandsig['BTLA_2aw2A_human_Iset'] = "A A' B C C' D E F G";
12904
12904
  tpl2strandsig['C3_2qkiD_human_n1'] = "A A' B C C' E F G";
12905
- tpl2strandsig['CD19_6al5A_human_C2orV-n1'] = "A' B C C' D E F G";
12905
+ tpl2strandsig['CD19_6al5A_human-n1'] = "A' B C C' D E F G";
12906
12906
  tpl2strandsig['CD28_1yjdC_human_V'] = "A A' B C C' C'' D E F G";
12907
12907
  tpl2strandsig['CD2_1hnfA_human_C2-n2'] = "A B C C' E F G";
12908
12908
  tpl2strandsig['CD2_1hnfA_human_V-n1'] = "A' B C C' C'' D E F G";
12909
- tpl2strandsig['CD3d_6jxrd_human_Iset'] = "A B C D E F G";
12910
- tpl2strandsig['CD3e_6jxrf_human_Iset'] = "A B C C' D E F G";
12911
- tpl2strandsig['CD3g_6jxrg_human_Iset'] = "A B C C' E F G G+";
12909
+ tpl2strandsig['CD3d_6jxrd_human_C1'] = "A B C D E F G";
12910
+ tpl2strandsig['CD3e_6jxrf_human_C1'] = "A B C C' D E F G";
12911
+ tpl2strandsig['CD3g_6jxrg_human_C2'] = "A B C C' E F G G+";
12912
12912
  tpl2strandsig['CD8a_1cd8A_human_V'] = "A A' B C C' C'' D E F G";
12913
12913
  tpl2strandsig['CoAtomerGamma1_1r4xA_human'] = "A- A B C D E F G";
12914
12914
  tpl2strandsig['Contactin1_2ee2A_human_FN3-n9'] = "A A' B C C' E F G";
12915
- tpl2strandsig['Contactin1_3s97C_human_C2-n2'] = "A A' B C D E F G";
12915
+ tpl2strandsig['Contactin1_3s97C_human_Iset-n2'] = "A A' B C D E F G";
12916
12916
  tpl2strandsig['CuZnSuperoxideDismutase_1hl5C_human'] = "A- A B C C' E F G";
12917
12917
  tpl2strandsig['ECadherin_4zt1A_human_n2'] = "A' B C D E F G";
12918
12918
  tpl2strandsig['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'] = "A--- A-- A- A B C C' C'' D E F G";
@@ -12920,15 +12920,15 @@ class SetDialog {
12920
12920
  tpl2strandsig['FAB-HEAVY_5esv_V-n1'] = "A B C C' C'' D E F G";
12921
12921
  tpl2strandsig['FAB-LIGHT_5esv_C1-n2'] = "A B C C' E F G";
12922
12922
  tpl2strandsig['FAB-LIGHT_5esv_V-n1'] = "A A' B C C' C'' D E F G";
12923
- tpl2strandsig['GHR_1axiB_human_FN3-n1'] = "A B C C' D E F G";
12923
+ tpl2strandsig['GHR_1axiB_human_C1-n1'] = "A B C C' D E F G";
12924
12924
  tpl2strandsig['ICOS_6x4gA_human_V'] = "A B C C' C'' D E F G";
12925
12925
  tpl2strandsig['IL6Rb_1bquB_human_FN3-n2'] = "A B C C' E F G";
12926
12926
  tpl2strandsig['IL6Rb_1bquB_human_FN3-n3'] = "A B C C' E F G";
12927
12927
  tpl2strandsig['InsulinR_8guyE_human_FN3-n1'] = "A B C C' E F G";
12928
12928
  tpl2strandsig['InsulinR_8guyE_human_FN3-n2'] = "A B C C' E F G";
12929
12929
  tpl2strandsig['IsdA_2iteA_bacteria'] = "A- A B C C' D E F G";
12930
- tpl2strandsig['JAM1_1nbqA_human_VorIset-n2'] = "A A' B C C' D E F G";
12931
- tpl2strandsig['LAG3_7tzgD_human_C2-n2'] = "A A' B C C' D E F G";
12930
+ tpl2strandsig['JAM1_1nbqA_human_Iset-n2'] = "A A' B C C' D E F G";
12931
+ tpl2strandsig['LAG3_7tzgD_human_C1-n2'] = "A A' B C C' D E F G";
12932
12932
  tpl2strandsig['LAG3_7tzgD_human_V-n1'] = "A' B C C' D E F G";
12933
12933
  tpl2strandsig['LaminAC_1ifrA_human'] = "A- A B C C' E E+ F G";
12934
12934
  tpl2strandsig['MHCIa_7phrH_human_C1'] = "A B C C' D E F G";
@@ -12942,16 +12942,16 @@ class SetDialog {
12942
12942
  tpl2strandsig['RBPJ_6py8C_human_Unk-n1'] = "A A' B C C' E F G";
12943
12943
  tpl2strandsig['RBPJ_6py8C_human_Unk-n2'] = "A B C D E F G";
12944
12944
  tpl2strandsig['Sidekick2_1wf5A_human_FN3-n7'] = "A B C C' E F G";
12945
- tpl2strandsig['Siglec3_5j0bB_human_C2-n2'] = "A A' B C D E F G";
12945
+ tpl2strandsig['Siglec3_5j0bB_human_C1-n2'] = "A A' B C D E F G";
12946
12946
  tpl2strandsig['TCRa_6jxrm_human_C1-n2'] = "A B C D E F G";
12947
12947
  tpl2strandsig['TCRa_6jxrm_human_V-n1'] = "A A' B C C' C'' D E F G";
12948
12948
  tpl2strandsig['TEAD1_3kysC_human'] = "A A+ A' B C C' E F G G+";
12949
12949
  tpl2strandsig['TP34_2o6cA_bacteria'] = "A- A B C C' D E F G";
12950
12950
  tpl2strandsig['TP47_1o75A_bacteria'] = "A B C C' D E F G";
12951
- tpl2strandsig['Titin_4uowM_human_Unk-n152'] = "A A' B C C' D E F G";
12951
+ tpl2strandsig['Titin_4uowM_human_Iset-n152'] = "A A' B C C' D E F G";
12952
12952
  tpl2strandsig['VISTA_6oilA_human_V'] = "A A' B C C' C'' D E F G G+";
12953
12953
  tpl2strandsig['VNAR_1t6vN_shark_V'] = "A A' B C C' D E F G";
12954
- tpl2strandsig['VTCN1_Q7Z7D3_human_V-n2'] = "A B C C' D E F G G+";
12954
+ tpl2strandsig['VTCN1_Q7Z7D3_human_C1-n2'] = "A B C C' D E F G G+";
12955
12955
 
12956
12956
  let html = '';
12957
12957
  for(let group in group2tpl) {
@@ -66763,7 +66763,7 @@ class Dssp {
66763
66763
 
66764
66764
  setRefPdbs() { let ic = this.icn3d; ic.icn3dui;
66765
66765
  // round 1, 16 templates
66766
- ic.refpdbArray = ['1InsulinR_8guyE_human_FN3-n1', '1Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', '1CoAtomerGamma1_1r4xA_human', '1C3_2qkiD_human_n1', '1CuZnSuperoxideDismutase_1hl5C_human', '1ASF1A_2iijA_human', '1FAB-LIGHT_5esv_C1-n2', '1CD2_1hnfA_human_C2-n2', '1NaCaExchanger_2fwuA_dog_n2', '1NaKATPaseTransporterBeta_2zxeB_spurdogshark', '1FAB-HEAVY_5esv_V-n1', '1PDL1_4z18B_human_V-n1', '1BTLA_2aw2A_human_Iset', '1LaminAC_1ifrA_human', '1CD3g_6jxrg_human_Iset', '1CD28_1yjdC_human_V', '1CD19_6al5A_human_C2orV-n1'];
66766
+ ic.refpdbArray = ['1InsulinR_8guyE_human_FN3-n1', '1Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', '1CoAtomerGamma1_1r4xA_human', '1C3_2qkiD_human_n1', '1CuZnSuperoxideDismutase_1hl5C_human', '1ASF1A_2iijA_human', '1FAB-LIGHT_5esv_C1-n2', '1CD2_1hnfA_human_C2-n2', '1NaCaExchanger_2fwuA_dog_n2', '1NaKATPaseTransporterBeta_2zxeB_spurdogshark', '1FAB-HEAVY_5esv_V-n1', '1PDL1_4z18B_human_V-n1', '1BTLA_2aw2A_human_Iset', '1LaminAC_1ifrA_human', '1CD3g_6jxrg_human_C2', '1CD28_1yjdC_human_V', '1CD19_6al5A_human-n1'];
66767
66767
 
66768
66768
  // round 2
66769
66769
  ic.refpdbHash = {};
@@ -66773,19 +66773,19 @@ class Dssp {
66773
66773
  ic.refpdbHash['1C3_2qkiD_human_n1'] = ['C3_2qkiD_human_n1', 'BArrestin1_4jqiA_rat_n1', 'RBPJ_6py8C_human_Unk-n1'];
66774
66774
  ic.refpdbHash['1CuZnSuperoxideDismutase_1hl5C_human'] = ['CuZnSuperoxideDismutase_1hl5C_human', 'TEAD1_3kysC_human'];
66775
66775
  ic.refpdbHash['1ASF1A_2iijA_human'] = ['ASF1A_2iijA_human', 'RBPJ_6py8C_human_Unk-n2', 'TP47_1o75A_bacteria'];
66776
- ic.refpdbHash['1FAB-LIGHT_5esv_C1-n2'] = ['FAB-LIGHT_5esv_C1-n2', 'GHR_1axiB_human_FN3-n1', 'VTCN1_Q7Z7D3_human_V-n2', 'B2Microglobulin_7phrL_human_C1', 'FAB-HEAVY_5esv_C1-n2', 'MHCIa_7phrH_human_C1'];
66777
- ic.refpdbHash['1CD2_1hnfA_human_C2-n2'] = ['CD2_1hnfA_human_C2-n2', 'Siglec3_5j0bB_human_C2-n2'];
66776
+ ic.refpdbHash['1FAB-LIGHT_5esv_C1-n2'] = ['FAB-LIGHT_5esv_C1-n2', 'GHR_1axiB_human_C1-n1', 'VTCN1_Q7Z7D3_human_C1-n2', 'B2Microglobulin_7phrL_human_C1', 'FAB-HEAVY_5esv_C1-n2', 'MHCIa_7phrH_human_C1'];
66777
+ ic.refpdbHash['1CD2_1hnfA_human_C2-n2'] = ['CD2_1hnfA_human_C2-n2', 'Siglec3_5j0bB_human_C1-n2'];
66778
66778
  ic.refpdbHash['1NaCaExchanger_2fwuA_dog_n2'] = ['NaCaExchanger_2fwuA_dog_n2', 'ORF7a_1xakA_virus', 'ECadherin_4zt1A_human_n2'];
66779
66779
  ic.refpdbHash['1NaKATPaseTransporterBeta_2zxeB_spurdogshark'] = ['NaKATPaseTransporterBeta_2zxeB_spurdogshark'];
66780
66780
  ic.refpdbHash['1FAB-HEAVY_5esv_V-n1'] = ['FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'VNAR_1t6vN_shark_V', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'CD8a_1cd8A_human_V', 'PD1_4zqkB_human_V'];
66781
66781
  ic.refpdbHash['1PDL1_4z18B_human_V-n1'] = ['PDL1_4z18B_human_V-n1', 'CD2_1hnfA_human_V-n1', 'LAG3_7tzgD_human_V-n1'];
66782
- ic.refpdbHash['1BTLA_2aw2A_human_Iset'] = ['BTLA_2aw2A_human_Iset', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Unk-n152', 'LAG3_7tzgD_human_C2-n2', 'JAM1_1nbqA_human_VorIset-n2', 'Contactin1_3s97C_human_C2-n2'];
66783
- ic.refpdbHash['1LaminAC_1ifrA_human'] = ['LaminAC_1ifrA_human', 'CD3d_6jxrd_human_Iset'];
66784
- ic.refpdbHash['1CD3g_6jxrg_human_Iset'] = ['CD3g_6jxrg_human_Iset', 'TCRa_6jxrm_human_C1-n2', 'IsdA_2iteA_bacteria'];
66785
- ic.refpdbHash['1CD28_1yjdC_human_V'] = ['CD28_1yjdC_human_V', 'MPT63_1lmiA_bacteria', 'CD3e_6jxrf_human_Iset'];
66786
- ic.refpdbHash['1CD19_6al5A_human_C2orV-n1'] = ['CD19_6al5A_human_C2orV-n1'];
66782
+ ic.refpdbHash['1BTLA_2aw2A_human_Iset'] = ['BTLA_2aw2A_human_Iset', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Iset-n152', 'LAG3_7tzgD_human_C1-n2', 'JAM1_1nbqA_human_Iset-n2', 'Contactin1_3s97C_human_Iset-n2'];
66783
+ ic.refpdbHash['1LaminAC_1ifrA_human'] = ['LaminAC_1ifrA_human', 'CD3d_6jxrd_human_C1'];
66784
+ ic.refpdbHash['1CD3g_6jxrg_human_C2'] = ['CD3g_6jxrg_human_C2', 'TCRa_6jxrm_human_C1-n2', 'IsdA_2iteA_bacteria'];
66785
+ ic.refpdbHash['1CD28_1yjdC_human_V'] = ['CD28_1yjdC_human_V', 'MPT63_1lmiA_bacteria', 'CD3e_6jxrf_human_C1'];
66786
+ ic.refpdbHash['1CD19_6al5A_human-n1'] = ['CD19_6al5A_human-n1'];
66787
66787
 
66788
- ic.refpdbHash['all_templates'] = ['ASF1A_2iijA_human', 'B2Microglobulin_7phrL_human_C1', 'BArrestin1_4jqiA_rat_n1', 'BTLA_2aw2A_human_Iset', 'C3_2qkiD_human_n1', 'CD19_6al5A_human_C2orV-n1', 'CD28_1yjdC_human_V', 'CD2_1hnfA_human_C2-n2', 'CD2_1hnfA_human_V-n1', 'CD3d_6jxrd_human_Iset', 'CD3e_6jxrf_human_Iset', 'CD3g_6jxrg_human_Iset', 'CD8a_1cd8A_human_V', 'CoAtomerGamma1_1r4xA_human', 'Contactin1_2ee2A_human_FN3-n9', 'Contactin1_3s97C_human_C2-n2', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'FAB-HEAVY_5esv_C1-n2', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-LIGHT_5esv_V-n1', 'GHR_1axiB_human_FN3-n1', 'ICOS_6x4gA_human_V', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'IsdA_2iteA_bacteria', 'JAM1_1nbqA_human_VorIset-n2', 'LAG3_7tzgD_human_C2-n2', 'LAG3_7tzgD_human_V-n1', 'LaminAC_1ifrA_human', 'MHCIa_7phrH_human_C1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'ORF7a_1xakA_virus', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'Palladin_2dm3A_human_Iset-n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'Sidekick2_1wf5A_human_FN3-n7', 'Siglec3_5j0bB_human_C2-n2', 'TCRa_6jxrm_human_C1-n2', 'TCRa_6jxrm_human_V-n1', 'TEAD1_3kysC_human', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'Titin_4uowM_human_Unk-n152', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V', 'VTCN1_Q7Z7D3_human_V-n2'];
66788
+ ic.refpdbHash['all_templates'] = ['ASF1A_2iijA_human', 'B2Microglobulin_7phrL_human_C1', 'BArrestin1_4jqiA_rat_n1', 'BTLA_2aw2A_human_Iset', 'C3_2qkiD_human_n1', 'CD19_6al5A_human-n1', 'CD28_1yjdC_human_V', 'CD2_1hnfA_human_C2-n2', 'CD2_1hnfA_human_V-n1', 'CD3d_6jxrd_human_C1', 'CD3e_6jxrf_human_C1', 'CD3g_6jxrg_human_C2', 'CD8a_1cd8A_human_V', 'CoAtomerGamma1_1r4xA_human', 'Contactin1_2ee2A_human_FN3-n9', 'Contactin1_3s97C_human_Iset-n2', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'FAB-HEAVY_5esv_C1-n2', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-LIGHT_5esv_V-n1', 'GHR_1axiB_human_C1-n1', 'ICOS_6x4gA_human_V', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'IsdA_2iteA_bacteria', 'JAM1_1nbqA_human_Iset-n2', 'LAG3_7tzgD_human_C1-n2', 'LAG3_7tzgD_human_V-n1', 'LaminAC_1ifrA_human', 'MHCIa_7phrH_human_C1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'ORF7a_1xakA_virus', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'Palladin_2dm3A_human_Iset-n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'Sidekick2_1wf5A_human_FN3-n7', 'Siglec3_5j0bB_human_C1-n2', 'TCRa_6jxrm_human_C1-n2', 'TCRa_6jxrm_human_V-n1', 'TEAD1_3kysC_human', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'Titin_4uowM_human_Iset-n152', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V', 'VTCN1_Q7Z7D3_human_C1-n2'];
66789
66789
 
66790
66790
  // use known ref structure
66791
66791
  ic.refpdbHash['5ESV_C'] = ['FAB-HEAVY_5esv_V-n1', 'FAB-HEAVY_5esv_C1-n2'];
@@ -66793,7 +66793,7 @@ class Dssp {
66793
66793
  ic.refpdbHash['8GUY_E'] = ['InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2'];
66794
66794
  ic.refpdbHash['6JXR_m'] = ['TCRa_6jxrm_human_V-n1', 'TCRa_6jxrm_human_C1-n2'];
66795
66795
  ic.refpdbHash['1HNF_A'] = ['CD2_1hnfA_human_V-n1', 'CD2_1hnfA_human_C2-n2'];
66796
- ic.refpdbHash['7TZG_D'] = ['LAG3_7tzgD_human_V-n1', 'LAG3_7tzgD_human_C2-n2'];
66796
+ ic.refpdbHash['7TZG_D'] = ['LAG3_7tzgD_human_V-n1', 'LAG3_7tzgD_human_C1-n2'];
66797
66797
  ic.refpdbHash['6PY8_C'] = ['RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2'];
66798
66798
  ic.refpdbHash['1BQU_B'] = ['IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3'];
66799
66799
 
@@ -66803,7 +66803,7 @@ class Dssp {
66803
66803
  ic.refpdbHash['1I8A_A'] = ['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'];
66804
66804
  ic.refpdbHash['2FWU_A'] = ['NaCaExchanger_2fwuA_dog_n2'];
66805
66805
  ic.refpdbHash['4JQI_A'] = ['BArrestin1_4jqiA_rat_n1'];
66806
- ic.refpdbHash['1NBQ_A'] = ['JAM1_1nbqA_human_VorIset-n2'];
66806
+ ic.refpdbHash['1NBQ_A'] = ['JAM1_1nbqA_human_Iset-n2'];
66807
66807
  ic.refpdbHash['1O75_A'] = ['TP47_1o75A_bacteria'];
66808
66808
  ic.refpdbHash['7PHR_H'] = ['MHCIa_7phrH_human_C1'];
66809
66809
  ic.refpdbHash['2IIJ_A'] = ['ASF1A_2iijA_human'];
@@ -66815,9 +66815,9 @@ class Dssp {
66815
66815
  ic.refpdbHash['2AW2_A'] = ['BTLA_2aw2A_human_Iset'];
66816
66816
  ic.refpdbHash['1HL5_C'] = ['CuZnSuperoxideDismutase_1hl5C_human'];
66817
66817
  ic.refpdbHash['1WF5_A'] = ['Sidekick2_1wf5A_human_FN3-n7'];
66818
- ic.refpdbHash['5J0B_B'] = ['Siglec3_5j0bB_human_C2-n2'];
66818
+ ic.refpdbHash['5J0B_B'] = ['Siglec3_5j0bB_human_C1-n2'];
66819
66819
  ic.refpdbHash['1IFR_A'] = ['LaminAC_1ifrA_human'];
66820
- ic.refpdbHash['Q7Z7D3_A'] = ['VTCN1_Q7Z7D3_human_V-n2'];
66820
+ ic.refpdbHash['Q7Z7D3_A'] = ['VTCN1_Q7Z7D3_human_C1-n2'];
66821
66821
  ic.refpdbHash['4ZQK_B'] = ['PD1_4zqkB_human_V'];
66822
66822
  ic.refpdbHash['2DM3_A'] = ['Palladin_2dm3A_human_Iset-n1'];
66823
66823
  ic.refpdbHash['2ITE_A'] = ['IsdA_2iteA_bacteria'];
@@ -66825,17 +66825,17 @@ class Dssp {
66825
66825
  ic.refpdbHash['4ZT1_A'] = ['ECadherin_4zt1A_human_n2'];
66826
66826
  ic.refpdbHash['1LMI_A'] = ['MPT63_1lmiA_bacteria'];
66827
66827
  ic.refpdbHash['1CD8_A'] = ['CD8a_1cd8A_human_V'];
66828
- ic.refpdbHash['3S97_C'] = ['Contactin1_3s97C_human_C2-n2'];
66829
- ic.refpdbHash['1AXI_B'] = ['GHR_1axiB_human_FN3-n1'];
66828
+ ic.refpdbHash['3S97_C'] = ['Contactin1_3s97C_human_Iset-n2'];
66829
+ ic.refpdbHash['1AXI_B'] = ['GHR_1axiB_human_C1-n1'];
66830
66830
  ic.refpdbHash['6X4G_A'] = ['ICOS_6x4gA_human_V'];
66831
66831
  ic.refpdbHash['2EE2_A'] = ['Contactin1_2ee2A_human_FN3-n9'];
66832
- ic.refpdbHash['4UOW_M'] = ['Titin_4uowM_human_Unk-n152'];
66833
- ic.refpdbHash['6A15_A'] = ['CD19_6al5A_human_C2orV-n1'];
66832
+ ic.refpdbHash['4UOW_M'] = ['Titin_4uowM_human_Iset-n152'];
66833
+ ic.refpdbHash['6A15_A'] = ['CD19_6al5A_human-n1'];
66834
66834
  ic.refpdbHash['2QKI_D'] = ['C3_2qkiD_human_n1'];
66835
66835
  ic.refpdbHash['1YJD_C'] = ['CD28_1yjdC_human_V'];
66836
- ic.refpdbHash['6JXR_d'] = ['CD3d_6jxrd_human_Iset'];
66837
- ic.refpdbHash['6JXR_f'] = ['CD3e_6jxrf_human_Iset'];
66838
- ic.refpdbHash['6JXR_g'] = ['CD3g_6jxrg_human_Iset'];
66836
+ ic.refpdbHash['6JXR_d'] = ['CD3d_6jxrd_human_C1'];
66837
+ ic.refpdbHash['6JXR_f'] = ['CD3e_6jxrf_human_C1'];
66838
+ ic.refpdbHash['6JXR_g'] = ['CD3g_6jxrg_human_C2'];
66839
66839
 
66840
66840
  // assign Ig types
66841
66841
  ic.ref2igtype = {};
@@ -66845,17 +66845,17 @@ class Dssp {
66845
66845
  ic.ref2igtype['BArrestin1_4jqiA_rat_n1'] = 'IgFN3-like';
66846
66846
  ic.ref2igtype['BTLA_2aw2A_human_Iset'] = 'IgI';
66847
66847
  ic.ref2igtype['C3_2qkiD_human_n1'] = 'IgFN3-like';
66848
- ic.ref2igtype['CD19_6al5A_human_C2orV-n1'] = 'CD19';
66848
+ ic.ref2igtype['CD19_6al5A_human-n1'] = 'CD19';
66849
66849
  ic.ref2igtype['CD28_1yjdC_human_V'] = 'IgV';
66850
66850
  ic.ref2igtype['CD2_1hnfA_human_C2-n2'] = 'IgC2';
66851
66851
  ic.ref2igtype['CD2_1hnfA_human_V-n1'] = 'IgV';
66852
- ic.ref2igtype['CD3d_6jxrd_human_Iset'] = 'IgI';
66853
- ic.ref2igtype['CD3e_6jxrf_human_Iset'] = 'IgI';
66854
- ic.ref2igtype['CD3g_6jxrg_human_Iset'] = 'IgI';
66852
+ ic.ref2igtype['CD3d_6jxrd_human_C1'] = 'IgI';
66853
+ ic.ref2igtype['CD3e_6jxrf_human_C1'] = 'IgI';
66854
+ ic.ref2igtype['CD3g_6jxrg_human_C2'] = 'IgI';
66855
66855
  ic.ref2igtype['CD8a_1cd8A_human_V'] = 'IgV';
66856
66856
  ic.ref2igtype['CoAtomerGamma1_1r4xA_human'] = 'IgE';
66857
66857
  ic.ref2igtype['Contactin1_2ee2A_human_FN3-n9'] = 'IgFN3';
66858
- ic.ref2igtype['Contactin1_3s97C_human_C2-n2'] = 'IgC2';
66858
+ ic.ref2igtype['Contactin1_3s97C_human_Iset-n2'] = 'IgC2';
66859
66859
  ic.ref2igtype['CuZnSuperoxideDismutase_1hl5C_human'] = 'SOD';
66860
66860
  ic.ref2igtype['ECadherin_4zt1A_human_n2'] = 'Cadherin';
66861
66861
  ic.ref2igtype['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'] = 'IgE';
@@ -66863,15 +66863,15 @@ class Dssp {
66863
66863
  ic.ref2igtype['FAB-HEAVY_5esv_V-n1'] = 'IgV';
66864
66864
  ic.ref2igtype['FAB-LIGHT_5esv_C1-n2'] = 'IgC1';
66865
66865
  ic.ref2igtype['FAB-LIGHT_5esv_V-n1'] = 'IgV';
66866
- ic.ref2igtype['GHR_1axiB_human_FN3-n1'] = 'IgFN3';
66866
+ ic.ref2igtype['GHR_1axiB_human_C1-n1'] = 'IgFN3';
66867
66867
  ic.ref2igtype['ICOS_6x4gA_human_V'] = 'IgV';
66868
66868
  ic.ref2igtype['IL6Rb_1bquB_human_FN3-n2'] = 'IgFN3';
66869
66869
  ic.ref2igtype['IL6Rb_1bquB_human_FN3-n3'] = 'IgFN3';
66870
66870
  ic.ref2igtype['InsulinR_8guyE_human_FN3-n1'] = 'IgFN3';
66871
66871
  ic.ref2igtype['InsulinR_8guyE_human_FN3-n2'] = 'IgFN3';
66872
66872
  ic.ref2igtype['IsdA_2iteA_bacteria'] = 'IgE';
66873
- ic.ref2igtype['JAM1_1nbqA_human_VorIset-n2'] = 'IgI';
66874
- ic.ref2igtype['LAG3_7tzgD_human_C2-n2'] = 'IgC2';
66873
+ ic.ref2igtype['JAM1_1nbqA_human_Iset-n2'] = 'IgI';
66874
+ ic.ref2igtype['LAG3_7tzgD_human_C1-n2'] = 'IgC2';
66875
66875
  ic.ref2igtype['LAG3_7tzgD_human_V-n1'] = 'IgV';
66876
66876
  ic.ref2igtype['LaminAC_1ifrA_human'] = 'Lamin';
66877
66877
  ic.ref2igtype['MHCIa_7phrH_human_C1'] = 'IgC1';
@@ -66885,16 +66885,16 @@ class Dssp {
66885
66885
  ic.ref2igtype['RBPJ_6py8C_human_Unk-n1'] = 'IgFN3-like';
66886
66886
  ic.ref2igtype['RBPJ_6py8C_human_Unk-n2'] = 'IgFN3-like';
66887
66887
  ic.ref2igtype['Sidekick2_1wf5A_human_FN3-n7'] = 'IgFN3';
66888
- ic.ref2igtype['Siglec3_5j0bB_human_C2-n2'] = 'IgC2';
66888
+ ic.ref2igtype['Siglec3_5j0bB_human_C1-n2'] = 'IgC2';
66889
66889
  ic.ref2igtype['TCRa_6jxrm_human_C1-n2'] = 'IgC1';
66890
66890
  ic.ref2igtype['TCRa_6jxrm_human_V-n1'] = 'IgV';
66891
66891
  ic.ref2igtype['TEAD1_3kysC_human'] = 'IgE';
66892
66892
  ic.ref2igtype['TP34_2o6cA_bacteria'] = 'IgE';
66893
66893
  ic.ref2igtype['TP47_1o75A_bacteria'] = 'IgE';
66894
- ic.ref2igtype['Titin_4uowM_human_Unk-n152'] = 'IgI';
66894
+ ic.ref2igtype['Titin_4uowM_human_Iset-n152'] = 'IgI';
66895
66895
  ic.ref2igtype['VISTA_6oilA_human_V'] = 'IgV';
66896
66896
  ic.ref2igtype['VNAR_1t6vN_shark_V'] = 'IgV';
66897
- ic.ref2igtype['VTCN1_Q7Z7D3_human_V-n2'] = 'IgV';
66897
+ ic.ref2igtype['VTCN1_Q7Z7D3_human_C1-n2'] = 'IgV';
66898
66898
  }
66899
66899
 
66900
66900
  getPdbAjaxArray() { let ic = this.icn3d, me = ic.icn3dui;
@@ -67609,7 +67609,7 @@ class Dssp {
67609
67609
 
67610
67610
  let currStrand;
67611
67611
 
67612
- // let bCd19 = refpdbnameArray.length == 1 && refpdbnameArray[0] == 'CD19_6al5A_human_C2orV-n1';
67612
+ // let bCd19 = refpdbnameArray.length == 1 && refpdbnameArray[0] == 'CD19_6al5A_human-n1';
67613
67613
  for(let i = 0, il = segArray.length; i < il; ++i) {
67614
67614
  let seg = segArray[i];
67615
67615
  if(!seg) continue;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "icn3d",
3
- "version": "3.30.4",
3
+ "version": "3.30.5",
4
4
  "main": "./icn3d.js",
5
5
  "exports": {
6
6
  ".": {