icn3d 3.30.4 → 3.30.5

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Files changed (4) hide show
  1. package/icn3d.js +51 -51
  2. package/icn3d.min.js +3 -3
  3. package/icn3d.module.js +51 -51
  4. package/package.json +1 -1
package/icn3d.js CHANGED
@@ -11983,17 +11983,17 @@ class SetDialog {
11983
11983
 
11984
11984
  setTemplateMenu() { let me = this.icn3dui; me.icn3d;
11985
11985
  let group2tpl = {};
11986
- group2tpl['V'] = ['CD28_1yjdC_human_V', 'CD2_1hnfA_human_V-n1', 'CD8a_1cd8A_human_V', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'ICOS_6x4gA_human_V', 'LAG3_7tzgD_human_V-n1', 'PDL1_4z18B_human_V-n1', 'PD1_4zqkB_human_V', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V'];
11987
- group2tpl['C1'] = ['B2Microglobulin_7phrL_human_C1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-HEAVY_5esv_C1-n2', 'GHR_1axiB_human_FN3-n1', 'MHCIa_7phrH_human_C1', 'TCRa_6jxrm_human_C1-n2', 'VTCN1_Q7Z7D3_human_V-n2'];
11988
- group2tpl['C2'] = ['CD2_1hnfA_human_C2-n2', 'Contactin1_3s97C_human_C2-n2', 'LAG3_7tzgD_human_C2-n2', 'Siglec3_5j0bB_human_C2-n2'];
11989
- group2tpl['I'] = ['BTLA_2aw2A_human_Iset', 'CD19_6al5A_human_C2orV-n1', 'JAM1_1nbqA_human_VorIset-n2', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Unk-n152'];
11990
- group2tpl['E'] = ['ASF1A_2iijA_human', 'CoAtomerGamma1_1r4xA_human', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'IsdA_2iteA_bacteria', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'TEAD1_3kysC_human'];
11986
+ group2tpl['IgV'] = ['CD28_1yjdC_human_V', 'CD2_1hnfA_human_V-n1', 'CD8a_1cd8A_human_V', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'ICOS_6x4gA_human_V', 'LAG3_7tzgD_human_V-n1', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V'];
11987
+ group2tpl['IgC1'] = ['B2Microglobulin_7phrL_human_C1', 'CD3d_6jxrd_human_C1', 'CD3e_6jxrf_human_C1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-HEAVY_5esv_C1-n2', 'GHR_1axiB_human_C1-n1', 'LAG3_7tzgD_human_C1-n2', 'MHCIa_7phrH_human_C1', 'Siglec3_5j0bB_human_C1-n2', 'TCRa_6jxrm_human_C1-n2', 'VTCN1_Q7Z7D3_human_C1-n2'];
11988
+ group2tpl['IgC2'] = ['CD2_1hnfA_human_C2-n2', 'CD3g_6jxrg_human_C2'];
11989
+ group2tpl['IgI'] = ['BTLA_2aw2A_human_Iset', 'Contactin1_3s97C_human_Iset-n2', 'JAM1_1nbqA_human_Iset-n2', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Iset-n152'];
11990
+ group2tpl['IgE'] = ['CoAtomerGamma1_1r4xA_human', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'IsdA_2iteA_bacteria', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria'];
11991
11991
 
11992
- group2tpl['FN3'] = ['Contactin1_2ee2A_human_FN3-n9', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'Sidekick2_1wf5A_human_FN3-n7'];
11992
+ group2tpl['IgFN3'] = ['Contactin1_2ee2A_human_FN3-n9', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'Sidekick2_1wf5A_human_FN3-n7'];
11993
11993
 
11994
- group2tpl['FN3-like'] = ['BArrestin1_4jqiA_rat_n1', 'C3_2qkiD_human_n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2'];
11994
+ group2tpl['IgFN3-like'] = ['ASF1A_2iijA_human', 'BArrestin1_4jqiA_rat_n1', 'C3_2qkiD_human_n1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'TEAD1_3kysC_human'];
11995
11995
 
11996
- group2tpl['Other'] = ['CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'LaminAC_1ifrA_human', 'ORF7a_1xakA_virus'];
11996
+ group2tpl['Other Ig'] = ['CD19_6al5A_human-n1', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'LaminAC_1ifrA_human', 'ORF7a_1xakA_virus'];
11997
11997
 
11998
11998
  let tpl2strandsig = {};
11999
11999
  tpl2strandsig['ASF1A_2iijA_human'] = "A A' B C C' E F G G+";
@@ -12001,17 +12001,17 @@ class SetDialog {
12001
12001
  tpl2strandsig['BArrestin1_4jqiA_rat_n1'] = "A- A A' B C C' E F G";
12002
12002
  tpl2strandsig['BTLA_2aw2A_human_Iset'] = "A A' B C C' D E F G";
12003
12003
  tpl2strandsig['C3_2qkiD_human_n1'] = "A A' B C C' E F G";
12004
- tpl2strandsig['CD19_6al5A_human_C2orV-n1'] = "A' B C C' D E F G";
12004
+ tpl2strandsig['CD19_6al5A_human-n1'] = "A' B C C' D E F G";
12005
12005
  tpl2strandsig['CD28_1yjdC_human_V'] = "A A' B C C' C'' D E F G";
12006
12006
  tpl2strandsig['CD2_1hnfA_human_C2-n2'] = "A B C C' E F G";
12007
12007
  tpl2strandsig['CD2_1hnfA_human_V-n1'] = "A' B C C' C'' D E F G";
12008
- tpl2strandsig['CD3d_6jxrd_human_Iset'] = "A B C D E F G";
12009
- tpl2strandsig['CD3e_6jxrf_human_Iset'] = "A B C C' D E F G";
12010
- tpl2strandsig['CD3g_6jxrg_human_Iset'] = "A B C C' E F G G+";
12008
+ tpl2strandsig['CD3d_6jxrd_human_C1'] = "A B C D E F G";
12009
+ tpl2strandsig['CD3e_6jxrf_human_C1'] = "A B C C' D E F G";
12010
+ tpl2strandsig['CD3g_6jxrg_human_C2'] = "A B C C' E F G G+";
12011
12011
  tpl2strandsig['CD8a_1cd8A_human_V'] = "A A' B C C' C'' D E F G";
12012
12012
  tpl2strandsig['CoAtomerGamma1_1r4xA_human'] = "A- A B C D E F G";
12013
12013
  tpl2strandsig['Contactin1_2ee2A_human_FN3-n9'] = "A A' B C C' E F G";
12014
- tpl2strandsig['Contactin1_3s97C_human_C2-n2'] = "A A' B C D E F G";
12014
+ tpl2strandsig['Contactin1_3s97C_human_Iset-n2'] = "A A' B C D E F G";
12015
12015
  tpl2strandsig['CuZnSuperoxideDismutase_1hl5C_human'] = "A- A B C C' E F G";
12016
12016
  tpl2strandsig['ECadherin_4zt1A_human_n2'] = "A' B C D E F G";
12017
12017
  tpl2strandsig['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'] = "A--- A-- A- A B C C' C'' D E F G";
@@ -12019,15 +12019,15 @@ class SetDialog {
12019
12019
  tpl2strandsig['FAB-HEAVY_5esv_V-n1'] = "A B C C' C'' D E F G";
12020
12020
  tpl2strandsig['FAB-LIGHT_5esv_C1-n2'] = "A B C C' E F G";
12021
12021
  tpl2strandsig['FAB-LIGHT_5esv_V-n1'] = "A A' B C C' C'' D E F G";
12022
- tpl2strandsig['GHR_1axiB_human_FN3-n1'] = "A B C C' D E F G";
12022
+ tpl2strandsig['GHR_1axiB_human_C1-n1'] = "A B C C' D E F G";
12023
12023
  tpl2strandsig['ICOS_6x4gA_human_V'] = "A B C C' C'' D E F G";
12024
12024
  tpl2strandsig['IL6Rb_1bquB_human_FN3-n2'] = "A B C C' E F G";
12025
12025
  tpl2strandsig['IL6Rb_1bquB_human_FN3-n3'] = "A B C C' E F G";
12026
12026
  tpl2strandsig['InsulinR_8guyE_human_FN3-n1'] = "A B C C' E F G";
12027
12027
  tpl2strandsig['InsulinR_8guyE_human_FN3-n2'] = "A B C C' E F G";
12028
12028
  tpl2strandsig['IsdA_2iteA_bacteria'] = "A- A B C C' D E F G";
12029
- tpl2strandsig['JAM1_1nbqA_human_VorIset-n2'] = "A A' B C C' D E F G";
12030
- tpl2strandsig['LAG3_7tzgD_human_C2-n2'] = "A A' B C C' D E F G";
12029
+ tpl2strandsig['JAM1_1nbqA_human_Iset-n2'] = "A A' B C C' D E F G";
12030
+ tpl2strandsig['LAG3_7tzgD_human_C1-n2'] = "A A' B C C' D E F G";
12031
12031
  tpl2strandsig['LAG3_7tzgD_human_V-n1'] = "A' B C C' D E F G";
12032
12032
  tpl2strandsig['LaminAC_1ifrA_human'] = "A- A B C C' E E+ F G";
12033
12033
  tpl2strandsig['MHCIa_7phrH_human_C1'] = "A B C C' D E F G";
@@ -12041,16 +12041,16 @@ class SetDialog {
12041
12041
  tpl2strandsig['RBPJ_6py8C_human_Unk-n1'] = "A A' B C C' E F G";
12042
12042
  tpl2strandsig['RBPJ_6py8C_human_Unk-n2'] = "A B C D E F G";
12043
12043
  tpl2strandsig['Sidekick2_1wf5A_human_FN3-n7'] = "A B C C' E F G";
12044
- tpl2strandsig['Siglec3_5j0bB_human_C2-n2'] = "A A' B C D E F G";
12044
+ tpl2strandsig['Siglec3_5j0bB_human_C1-n2'] = "A A' B C D E F G";
12045
12045
  tpl2strandsig['TCRa_6jxrm_human_C1-n2'] = "A B C D E F G";
12046
12046
  tpl2strandsig['TCRa_6jxrm_human_V-n1'] = "A A' B C C' C'' D E F G";
12047
12047
  tpl2strandsig['TEAD1_3kysC_human'] = "A A+ A' B C C' E F G G+";
12048
12048
  tpl2strandsig['TP34_2o6cA_bacteria'] = "A- A B C C' D E F G";
12049
12049
  tpl2strandsig['TP47_1o75A_bacteria'] = "A B C C' D E F G";
12050
- tpl2strandsig['Titin_4uowM_human_Unk-n152'] = "A A' B C C' D E F G";
12050
+ tpl2strandsig['Titin_4uowM_human_Iset-n152'] = "A A' B C C' D E F G";
12051
12051
  tpl2strandsig['VISTA_6oilA_human_V'] = "A A' B C C' C'' D E F G G+";
12052
12052
  tpl2strandsig['VNAR_1t6vN_shark_V'] = "A A' B C C' D E F G";
12053
- tpl2strandsig['VTCN1_Q7Z7D3_human_V-n2'] = "A B C C' D E F G G+";
12053
+ tpl2strandsig['VTCN1_Q7Z7D3_human_C1-n2'] = "A B C C' D E F G G+";
12054
12054
 
12055
12055
  let html = '';
12056
12056
  for(let group in group2tpl) {
@@ -65862,7 +65862,7 @@ class Dssp {
65862
65862
 
65863
65863
  setRefPdbs() { let ic = this.icn3d; ic.icn3dui;
65864
65864
  // round 1, 16 templates
65865
- ic.refpdbArray = ['1InsulinR_8guyE_human_FN3-n1', '1Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', '1CoAtomerGamma1_1r4xA_human', '1C3_2qkiD_human_n1', '1CuZnSuperoxideDismutase_1hl5C_human', '1ASF1A_2iijA_human', '1FAB-LIGHT_5esv_C1-n2', '1CD2_1hnfA_human_C2-n2', '1NaCaExchanger_2fwuA_dog_n2', '1NaKATPaseTransporterBeta_2zxeB_spurdogshark', '1FAB-HEAVY_5esv_V-n1', '1PDL1_4z18B_human_V-n1', '1BTLA_2aw2A_human_Iset', '1LaminAC_1ifrA_human', '1CD3g_6jxrg_human_Iset', '1CD28_1yjdC_human_V', '1CD19_6al5A_human_C2orV-n1'];
65865
+ ic.refpdbArray = ['1InsulinR_8guyE_human_FN3-n1', '1Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', '1CoAtomerGamma1_1r4xA_human', '1C3_2qkiD_human_n1', '1CuZnSuperoxideDismutase_1hl5C_human', '1ASF1A_2iijA_human', '1FAB-LIGHT_5esv_C1-n2', '1CD2_1hnfA_human_C2-n2', '1NaCaExchanger_2fwuA_dog_n2', '1NaKATPaseTransporterBeta_2zxeB_spurdogshark', '1FAB-HEAVY_5esv_V-n1', '1PDL1_4z18B_human_V-n1', '1BTLA_2aw2A_human_Iset', '1LaminAC_1ifrA_human', '1CD3g_6jxrg_human_C2', '1CD28_1yjdC_human_V', '1CD19_6al5A_human-n1'];
65866
65866
 
65867
65867
  // round 2
65868
65868
  ic.refpdbHash = {};
@@ -65872,19 +65872,19 @@ class Dssp {
65872
65872
  ic.refpdbHash['1C3_2qkiD_human_n1'] = ['C3_2qkiD_human_n1', 'BArrestin1_4jqiA_rat_n1', 'RBPJ_6py8C_human_Unk-n1'];
65873
65873
  ic.refpdbHash['1CuZnSuperoxideDismutase_1hl5C_human'] = ['CuZnSuperoxideDismutase_1hl5C_human', 'TEAD1_3kysC_human'];
65874
65874
  ic.refpdbHash['1ASF1A_2iijA_human'] = ['ASF1A_2iijA_human', 'RBPJ_6py8C_human_Unk-n2', 'TP47_1o75A_bacteria'];
65875
- ic.refpdbHash['1FAB-LIGHT_5esv_C1-n2'] = ['FAB-LIGHT_5esv_C1-n2', 'GHR_1axiB_human_FN3-n1', 'VTCN1_Q7Z7D3_human_V-n2', 'B2Microglobulin_7phrL_human_C1', 'FAB-HEAVY_5esv_C1-n2', 'MHCIa_7phrH_human_C1'];
65876
- ic.refpdbHash['1CD2_1hnfA_human_C2-n2'] = ['CD2_1hnfA_human_C2-n2', 'Siglec3_5j0bB_human_C2-n2'];
65875
+ ic.refpdbHash['1FAB-LIGHT_5esv_C1-n2'] = ['FAB-LIGHT_5esv_C1-n2', 'GHR_1axiB_human_C1-n1', 'VTCN1_Q7Z7D3_human_C1-n2', 'B2Microglobulin_7phrL_human_C1', 'FAB-HEAVY_5esv_C1-n2', 'MHCIa_7phrH_human_C1'];
65876
+ ic.refpdbHash['1CD2_1hnfA_human_C2-n2'] = ['CD2_1hnfA_human_C2-n2', 'Siglec3_5j0bB_human_C1-n2'];
65877
65877
  ic.refpdbHash['1NaCaExchanger_2fwuA_dog_n2'] = ['NaCaExchanger_2fwuA_dog_n2', 'ORF7a_1xakA_virus', 'ECadherin_4zt1A_human_n2'];
65878
65878
  ic.refpdbHash['1NaKATPaseTransporterBeta_2zxeB_spurdogshark'] = ['NaKATPaseTransporterBeta_2zxeB_spurdogshark'];
65879
65879
  ic.refpdbHash['1FAB-HEAVY_5esv_V-n1'] = ['FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_V-n1', 'VNAR_1t6vN_shark_V', 'TCRa_6jxrm_human_V-n1', 'VISTA_6oilA_human_V', 'CD8a_1cd8A_human_V', 'PD1_4zqkB_human_V'];
65880
65880
  ic.refpdbHash['1PDL1_4z18B_human_V-n1'] = ['PDL1_4z18B_human_V-n1', 'CD2_1hnfA_human_V-n1', 'LAG3_7tzgD_human_V-n1'];
65881
- ic.refpdbHash['1BTLA_2aw2A_human_Iset'] = ['BTLA_2aw2A_human_Iset', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Unk-n152', 'LAG3_7tzgD_human_C2-n2', 'JAM1_1nbqA_human_VorIset-n2', 'Contactin1_3s97C_human_C2-n2'];
65882
- ic.refpdbHash['1LaminAC_1ifrA_human'] = ['LaminAC_1ifrA_human', 'CD3d_6jxrd_human_Iset'];
65883
- ic.refpdbHash['1CD3g_6jxrg_human_Iset'] = ['CD3g_6jxrg_human_Iset', 'TCRa_6jxrm_human_C1-n2', 'IsdA_2iteA_bacteria'];
65884
- ic.refpdbHash['1CD28_1yjdC_human_V'] = ['CD28_1yjdC_human_V', 'MPT63_1lmiA_bacteria', 'CD3e_6jxrf_human_Iset'];
65885
- ic.refpdbHash['1CD19_6al5A_human_C2orV-n1'] = ['CD19_6al5A_human_C2orV-n1'];
65881
+ ic.refpdbHash['1BTLA_2aw2A_human_Iset'] = ['BTLA_2aw2A_human_Iset', 'Palladin_2dm3A_human_Iset-n1', 'Titin_4uowM_human_Iset-n152', 'LAG3_7tzgD_human_C1-n2', 'JAM1_1nbqA_human_Iset-n2', 'Contactin1_3s97C_human_Iset-n2'];
65882
+ ic.refpdbHash['1LaminAC_1ifrA_human'] = ['LaminAC_1ifrA_human', 'CD3d_6jxrd_human_C1'];
65883
+ ic.refpdbHash['1CD3g_6jxrg_human_C2'] = ['CD3g_6jxrg_human_C2', 'TCRa_6jxrm_human_C1-n2', 'IsdA_2iteA_bacteria'];
65884
+ ic.refpdbHash['1CD28_1yjdC_human_V'] = ['CD28_1yjdC_human_V', 'MPT63_1lmiA_bacteria', 'CD3e_6jxrf_human_C1'];
65885
+ ic.refpdbHash['1CD19_6al5A_human-n1'] = ['CD19_6al5A_human-n1'];
65886
65886
 
65887
- ic.refpdbHash['all_templates'] = ['ASF1A_2iijA_human', 'B2Microglobulin_7phrL_human_C1', 'BArrestin1_4jqiA_rat_n1', 'BTLA_2aw2A_human_Iset', 'C3_2qkiD_human_n1', 'CD19_6al5A_human_C2orV-n1', 'CD28_1yjdC_human_V', 'CD2_1hnfA_human_C2-n2', 'CD2_1hnfA_human_V-n1', 'CD3d_6jxrd_human_Iset', 'CD3e_6jxrf_human_Iset', 'CD3g_6jxrg_human_Iset', 'CD8a_1cd8A_human_V', 'CoAtomerGamma1_1r4xA_human', 'Contactin1_2ee2A_human_FN3-n9', 'Contactin1_3s97C_human_C2-n2', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'FAB-HEAVY_5esv_C1-n2', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-LIGHT_5esv_V-n1', 'GHR_1axiB_human_FN3-n1', 'ICOS_6x4gA_human_V', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'IsdA_2iteA_bacteria', 'JAM1_1nbqA_human_VorIset-n2', 'LAG3_7tzgD_human_C2-n2', 'LAG3_7tzgD_human_V-n1', 'LaminAC_1ifrA_human', 'MHCIa_7phrH_human_C1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'ORF7a_1xakA_virus', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'Palladin_2dm3A_human_Iset-n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'Sidekick2_1wf5A_human_FN3-n7', 'Siglec3_5j0bB_human_C2-n2', 'TCRa_6jxrm_human_C1-n2', 'TCRa_6jxrm_human_V-n1', 'TEAD1_3kysC_human', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'Titin_4uowM_human_Unk-n152', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V', 'VTCN1_Q7Z7D3_human_V-n2'];
65887
+ ic.refpdbHash['all_templates'] = ['ASF1A_2iijA_human', 'B2Microglobulin_7phrL_human_C1', 'BArrestin1_4jqiA_rat_n1', 'BTLA_2aw2A_human_Iset', 'C3_2qkiD_human_n1', 'CD19_6al5A_human-n1', 'CD28_1yjdC_human_V', 'CD2_1hnfA_human_C2-n2', 'CD2_1hnfA_human_V-n1', 'CD3d_6jxrd_human_C1', 'CD3e_6jxrf_human_C1', 'CD3g_6jxrg_human_C2', 'CD8a_1cd8A_human_V', 'CoAtomerGamma1_1r4xA_human', 'Contactin1_2ee2A_human_FN3-n9', 'Contactin1_3s97C_human_Iset-n2', 'CuZnSuperoxideDismutase_1hl5C_human', 'ECadherin_4zt1A_human_n2', 'Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4', 'FAB-HEAVY_5esv_C1-n2', 'FAB-HEAVY_5esv_V-n1', 'FAB-LIGHT_5esv_C1-n2', 'FAB-LIGHT_5esv_V-n1', 'GHR_1axiB_human_C1-n1', 'ICOS_6x4gA_human_V', 'IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3', 'InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2', 'IsdA_2iteA_bacteria', 'JAM1_1nbqA_human_Iset-n2', 'LAG3_7tzgD_human_C1-n2', 'LAG3_7tzgD_human_V-n1', 'LaminAC_1ifrA_human', 'MHCIa_7phrH_human_C1', 'MPT63_1lmiA_bacteria', 'NaCaExchanger_2fwuA_dog_n2', 'NaKATPaseTransporterBeta_2zxeB_spurdogshark', 'ORF7a_1xakA_virus', 'PD1_4zqkB_human_V', 'PDL1_4z18B_human_V-n1', 'Palladin_2dm3A_human_Iset-n1', 'RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2', 'Sidekick2_1wf5A_human_FN3-n7', 'Siglec3_5j0bB_human_C1-n2', 'TCRa_6jxrm_human_C1-n2', 'TCRa_6jxrm_human_V-n1', 'TEAD1_3kysC_human', 'TP34_2o6cA_bacteria', 'TP47_1o75A_bacteria', 'Titin_4uowM_human_Iset-n152', 'VISTA_6oilA_human_V', 'VNAR_1t6vN_shark_V', 'VTCN1_Q7Z7D3_human_C1-n2'];
65888
65888
 
65889
65889
  // use known ref structure
65890
65890
  ic.refpdbHash['5ESV_C'] = ['FAB-HEAVY_5esv_V-n1', 'FAB-HEAVY_5esv_C1-n2'];
@@ -65892,7 +65892,7 @@ class Dssp {
65892
65892
  ic.refpdbHash['8GUY_E'] = ['InsulinR_8guyE_human_FN3-n1', 'InsulinR_8guyE_human_FN3-n2'];
65893
65893
  ic.refpdbHash['6JXR_m'] = ['TCRa_6jxrm_human_V-n1', 'TCRa_6jxrm_human_C1-n2'];
65894
65894
  ic.refpdbHash['1HNF_A'] = ['CD2_1hnfA_human_V-n1', 'CD2_1hnfA_human_C2-n2'];
65895
- ic.refpdbHash['7TZG_D'] = ['LAG3_7tzgD_human_V-n1', 'LAG3_7tzgD_human_C2-n2'];
65895
+ ic.refpdbHash['7TZG_D'] = ['LAG3_7tzgD_human_V-n1', 'LAG3_7tzgD_human_C1-n2'];
65896
65896
  ic.refpdbHash['6PY8_C'] = ['RBPJ_6py8C_human_Unk-n1', 'RBPJ_6py8C_human_Unk-n2'];
65897
65897
  ic.refpdbHash['1BQU_B'] = ['IL6Rb_1bquB_human_FN3-n2', 'IL6Rb_1bquB_human_FN3-n3'];
65898
65898
 
@@ -65902,7 +65902,7 @@ class Dssp {
65902
65902
  ic.refpdbHash['1I8A_A'] = ['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'];
65903
65903
  ic.refpdbHash['2FWU_A'] = ['NaCaExchanger_2fwuA_dog_n2'];
65904
65904
  ic.refpdbHash['4JQI_A'] = ['BArrestin1_4jqiA_rat_n1'];
65905
- ic.refpdbHash['1NBQ_A'] = ['JAM1_1nbqA_human_VorIset-n2'];
65905
+ ic.refpdbHash['1NBQ_A'] = ['JAM1_1nbqA_human_Iset-n2'];
65906
65906
  ic.refpdbHash['1O75_A'] = ['TP47_1o75A_bacteria'];
65907
65907
  ic.refpdbHash['7PHR_H'] = ['MHCIa_7phrH_human_C1'];
65908
65908
  ic.refpdbHash['2IIJ_A'] = ['ASF1A_2iijA_human'];
@@ -65914,9 +65914,9 @@ class Dssp {
65914
65914
  ic.refpdbHash['2AW2_A'] = ['BTLA_2aw2A_human_Iset'];
65915
65915
  ic.refpdbHash['1HL5_C'] = ['CuZnSuperoxideDismutase_1hl5C_human'];
65916
65916
  ic.refpdbHash['1WF5_A'] = ['Sidekick2_1wf5A_human_FN3-n7'];
65917
- ic.refpdbHash['5J0B_B'] = ['Siglec3_5j0bB_human_C2-n2'];
65917
+ ic.refpdbHash['5J0B_B'] = ['Siglec3_5j0bB_human_C1-n2'];
65918
65918
  ic.refpdbHash['1IFR_A'] = ['LaminAC_1ifrA_human'];
65919
- ic.refpdbHash['Q7Z7D3_A'] = ['VTCN1_Q7Z7D3_human_V-n2'];
65919
+ ic.refpdbHash['Q7Z7D3_A'] = ['VTCN1_Q7Z7D3_human_C1-n2'];
65920
65920
  ic.refpdbHash['4ZQK_B'] = ['PD1_4zqkB_human_V'];
65921
65921
  ic.refpdbHash['2DM3_A'] = ['Palladin_2dm3A_human_Iset-n1'];
65922
65922
  ic.refpdbHash['2ITE_A'] = ['IsdA_2iteA_bacteria'];
@@ -65924,17 +65924,17 @@ class Dssp {
65924
65924
  ic.refpdbHash['4ZT1_A'] = ['ECadherin_4zt1A_human_n2'];
65925
65925
  ic.refpdbHash['1LMI_A'] = ['MPT63_1lmiA_bacteria'];
65926
65926
  ic.refpdbHash['1CD8_A'] = ['CD8a_1cd8A_human_V'];
65927
- ic.refpdbHash['3S97_C'] = ['Contactin1_3s97C_human_C2-n2'];
65928
- ic.refpdbHash['1AXI_B'] = ['GHR_1axiB_human_FN3-n1'];
65927
+ ic.refpdbHash['3S97_C'] = ['Contactin1_3s97C_human_Iset-n2'];
65928
+ ic.refpdbHash['1AXI_B'] = ['GHR_1axiB_human_C1-n1'];
65929
65929
  ic.refpdbHash['6X4G_A'] = ['ICOS_6x4gA_human_V'];
65930
65930
  ic.refpdbHash['2EE2_A'] = ['Contactin1_2ee2A_human_FN3-n9'];
65931
- ic.refpdbHash['4UOW_M'] = ['Titin_4uowM_human_Unk-n152'];
65932
- ic.refpdbHash['6A15_A'] = ['CD19_6al5A_human_C2orV-n1'];
65931
+ ic.refpdbHash['4UOW_M'] = ['Titin_4uowM_human_Iset-n152'];
65932
+ ic.refpdbHash['6A15_A'] = ['CD19_6al5A_human-n1'];
65933
65933
  ic.refpdbHash['2QKI_D'] = ['C3_2qkiD_human_n1'];
65934
65934
  ic.refpdbHash['1YJD_C'] = ['CD28_1yjdC_human_V'];
65935
- ic.refpdbHash['6JXR_d'] = ['CD3d_6jxrd_human_Iset'];
65936
- ic.refpdbHash['6JXR_f'] = ['CD3e_6jxrf_human_Iset'];
65937
- ic.refpdbHash['6JXR_g'] = ['CD3g_6jxrg_human_Iset'];
65935
+ ic.refpdbHash['6JXR_d'] = ['CD3d_6jxrd_human_C1'];
65936
+ ic.refpdbHash['6JXR_f'] = ['CD3e_6jxrf_human_C1'];
65937
+ ic.refpdbHash['6JXR_g'] = ['CD3g_6jxrg_human_C2'];
65938
65938
 
65939
65939
  // assign Ig types
65940
65940
  ic.ref2igtype = {};
@@ -65944,17 +65944,17 @@ class Dssp {
65944
65944
  ic.ref2igtype['BArrestin1_4jqiA_rat_n1'] = 'IgFN3-like';
65945
65945
  ic.ref2igtype['BTLA_2aw2A_human_Iset'] = 'IgI';
65946
65946
  ic.ref2igtype['C3_2qkiD_human_n1'] = 'IgFN3-like';
65947
- ic.ref2igtype['CD19_6al5A_human_C2orV-n1'] = 'CD19';
65947
+ ic.ref2igtype['CD19_6al5A_human-n1'] = 'CD19';
65948
65948
  ic.ref2igtype['CD28_1yjdC_human_V'] = 'IgV';
65949
65949
  ic.ref2igtype['CD2_1hnfA_human_C2-n2'] = 'IgC2';
65950
65950
  ic.ref2igtype['CD2_1hnfA_human_V-n1'] = 'IgV';
65951
- ic.ref2igtype['CD3d_6jxrd_human_Iset'] = 'IgI';
65952
- ic.ref2igtype['CD3e_6jxrf_human_Iset'] = 'IgI';
65953
- ic.ref2igtype['CD3g_6jxrg_human_Iset'] = 'IgI';
65951
+ ic.ref2igtype['CD3d_6jxrd_human_C1'] = 'IgI';
65952
+ ic.ref2igtype['CD3e_6jxrf_human_C1'] = 'IgI';
65953
+ ic.ref2igtype['CD3g_6jxrg_human_C2'] = 'IgI';
65954
65954
  ic.ref2igtype['CD8a_1cd8A_human_V'] = 'IgV';
65955
65955
  ic.ref2igtype['CoAtomerGamma1_1r4xA_human'] = 'IgE';
65956
65956
  ic.ref2igtype['Contactin1_2ee2A_human_FN3-n9'] = 'IgFN3';
65957
- ic.ref2igtype['Contactin1_3s97C_human_C2-n2'] = 'IgC2';
65957
+ ic.ref2igtype['Contactin1_3s97C_human_Iset-n2'] = 'IgC2';
65958
65958
  ic.ref2igtype['CuZnSuperoxideDismutase_1hl5C_human'] = 'SOD';
65959
65959
  ic.ref2igtype['ECadherin_4zt1A_human_n2'] = 'Cadherin';
65960
65960
  ic.ref2igtype['Endo-1,4-BetaXylanase10A_1i8aA_bacteria_n4'] = 'IgE';
@@ -65962,15 +65962,15 @@ class Dssp {
65962
65962
  ic.ref2igtype['FAB-HEAVY_5esv_V-n1'] = 'IgV';
65963
65963
  ic.ref2igtype['FAB-LIGHT_5esv_C1-n2'] = 'IgC1';
65964
65964
  ic.ref2igtype['FAB-LIGHT_5esv_V-n1'] = 'IgV';
65965
- ic.ref2igtype['GHR_1axiB_human_FN3-n1'] = 'IgFN3';
65965
+ ic.ref2igtype['GHR_1axiB_human_C1-n1'] = 'IgFN3';
65966
65966
  ic.ref2igtype['ICOS_6x4gA_human_V'] = 'IgV';
65967
65967
  ic.ref2igtype['IL6Rb_1bquB_human_FN3-n2'] = 'IgFN3';
65968
65968
  ic.ref2igtype['IL6Rb_1bquB_human_FN3-n3'] = 'IgFN3';
65969
65969
  ic.ref2igtype['InsulinR_8guyE_human_FN3-n1'] = 'IgFN3';
65970
65970
  ic.ref2igtype['InsulinR_8guyE_human_FN3-n2'] = 'IgFN3';
65971
65971
  ic.ref2igtype['IsdA_2iteA_bacteria'] = 'IgE';
65972
- ic.ref2igtype['JAM1_1nbqA_human_VorIset-n2'] = 'IgI';
65973
- ic.ref2igtype['LAG3_7tzgD_human_C2-n2'] = 'IgC2';
65972
+ ic.ref2igtype['JAM1_1nbqA_human_Iset-n2'] = 'IgI';
65973
+ ic.ref2igtype['LAG3_7tzgD_human_C1-n2'] = 'IgC2';
65974
65974
  ic.ref2igtype['LAG3_7tzgD_human_V-n1'] = 'IgV';
65975
65975
  ic.ref2igtype['LaminAC_1ifrA_human'] = 'Lamin';
65976
65976
  ic.ref2igtype['MHCIa_7phrH_human_C1'] = 'IgC1';
@@ -65984,16 +65984,16 @@ class Dssp {
65984
65984
  ic.ref2igtype['RBPJ_6py8C_human_Unk-n1'] = 'IgFN3-like';
65985
65985
  ic.ref2igtype['RBPJ_6py8C_human_Unk-n2'] = 'IgFN3-like';
65986
65986
  ic.ref2igtype['Sidekick2_1wf5A_human_FN3-n7'] = 'IgFN3';
65987
- ic.ref2igtype['Siglec3_5j0bB_human_C2-n2'] = 'IgC2';
65987
+ ic.ref2igtype['Siglec3_5j0bB_human_C1-n2'] = 'IgC2';
65988
65988
  ic.ref2igtype['TCRa_6jxrm_human_C1-n2'] = 'IgC1';
65989
65989
  ic.ref2igtype['TCRa_6jxrm_human_V-n1'] = 'IgV';
65990
65990
  ic.ref2igtype['TEAD1_3kysC_human'] = 'IgE';
65991
65991
  ic.ref2igtype['TP34_2o6cA_bacteria'] = 'IgE';
65992
65992
  ic.ref2igtype['TP47_1o75A_bacteria'] = 'IgE';
65993
- ic.ref2igtype['Titin_4uowM_human_Unk-n152'] = 'IgI';
65993
+ ic.ref2igtype['Titin_4uowM_human_Iset-n152'] = 'IgI';
65994
65994
  ic.ref2igtype['VISTA_6oilA_human_V'] = 'IgV';
65995
65995
  ic.ref2igtype['VNAR_1t6vN_shark_V'] = 'IgV';
65996
- ic.ref2igtype['VTCN1_Q7Z7D3_human_V-n2'] = 'IgV';
65996
+ ic.ref2igtype['VTCN1_Q7Z7D3_human_C1-n2'] = 'IgV';
65997
65997
  }
65998
65998
 
65999
65999
  getPdbAjaxArray() { let ic = this.icn3d, me = ic.icn3dui;
@@ -66708,7 +66708,7 @@ class Dssp {
66708
66708
 
66709
66709
  let currStrand;
66710
66710
 
66711
- // let bCd19 = refpdbnameArray.length == 1 && refpdbnameArray[0] == 'CD19_6al5A_human_C2orV-n1';
66711
+ // let bCd19 = refpdbnameArray.length == 1 && refpdbnameArray[0] == 'CD19_6al5A_human-n1';
66712
66712
  for(let i = 0, il = segArray.length; i < il; ++i) {
66713
66713
  let seg = segArray[i];
66714
66714
  if(!seg) continue;