icn3d 3.29.8 → 3.29.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +11 -4
- package/icn3d.min.js +2 -2
- package/icn3d.module.js +11 -4
- package/package.json +1 -1
package/icn3d.module.js
CHANGED
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@@ -39078,6 +39078,8 @@ class AnnoIg {
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39078
39078
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39079
39079
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igElem.endPos = prevPos;
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39080
39080
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ic.chain2igArray[chnid].push(igElem);
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39081
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+
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39082
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+
if(me.bNode) return {html: '', html2: '', html3: ''};
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39081
39083
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let titleSpace = 120;
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39082
39084
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39083
39085
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let linkStr = 'icn3d-link icn3d-blue';
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@@ -39134,10 +39136,13 @@ class AnnoIg {
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39134
39136
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html += '</div>';
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39135
39137
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39136
39138
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let igArray = ic.chain2igArray[chnid];
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39139
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+
if(igArray.length == 0) return {html: '', html2: '', html3: ''};
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39137
39140
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let rangeArray = [], titleArray = [], fullTitleArray = [], domainArray = [];
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39138
39141
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for(let i = 0, il = igArray.length; i < il; ++i) {
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39139
39142
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let domainid = igArray[i].domainid;
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39140
39143
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let info = ic.domainid2info[domainid];
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39144
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+
if(!info) continue;
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39145
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+
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39141
39146
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let tmscore = info.score;
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39142
39147
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let igType = ic.ref2igtype[info.refpdbname];
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39143
39148
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titleArray.push(igType + ' (TM:' + parseFloat(tmscore).toFixed(2) + ')');
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@@ -39148,6 +39153,7 @@ class AnnoIg {
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39148
39153
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range.locs = [{"from":igArray[i].startPos, "to":igArray[i].endPos}];
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39149
39154
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rangeArray.push(range);
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39150
39155
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}
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39156
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+
if(titleArray.length == 0) return {html: '', html2: '', html3: ''};
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39151
39157
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39152
39158
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// add tracks for the summary view
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39153
39159
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for(let i = 0, il = fromArray.length; i < il; ++i) {
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@@ -67825,7 +67831,7 @@ class Dssp {
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67825
67831
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if(type == 'igstrand' || type == 'IgStrand') {
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67826
67832
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// iGStrand reference numbers were adjusted when showing in sequences
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67827
67833
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if(me.bNode) {
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67828
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-
for(let chnid in ic.chains) {
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67834
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+
for(let chnid in ic.chains) {
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67829
67835
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let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.chains[chnid]);
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67830
67836
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if(ic.proteins.hasOwnProperty(atom.serial)) {
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67831
67837
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let giSeq = [];
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@@ -67889,21 +67895,22 @@ class Dssp {
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67889
67895
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refData += '}\n';
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67890
67896
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}
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67891
67897
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*/
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67898
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+
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67892
67899
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if(bIgDomain) {
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67893
67900
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refData += '"igs": [\n';
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67894
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-
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67895
67901
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for(let chnid in ic.chains) {
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67896
67902
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let igArray = ic.chain2igArray[chnid];
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67897
67903
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67898
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-
if(igArray.length > 0) {
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67904
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+
if(igArray && igArray.length > 0) {
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67899
67905
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refData += '{"' + chnid + '": {\n';
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67900
67906
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67901
67907
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for(let i = 0, il = igArray.length; i < il; ++i) {
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67902
67908
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let startPos = igArray[i].startPos;
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67903
67909
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let endPos = igArray[i].endPos;
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67904
67910
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let domainid = igArray[i].domainid;
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67905
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-
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67906
67911
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let info = ic.domainid2info[domainid];
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67912
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+
if(!info) continue;
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67913
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+
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67907
67914
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refData += '"' + domainid + '": {\n';
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67908
67915
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67909
67916
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refData += '"refpdbname":"' + info.refpdbname + '", "score":' + info.score + ', "seqid":' + info.seqid + ', "nresAlign":' + info.nresAlign + ', "data": [';
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