icn3d 3.29.8 → 3.29.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +11 -4
- package/icn3d.min.js +2 -2
- package/icn3d.module.js +11 -4
- package/package.json +1 -1
package/icn3d.js
CHANGED
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@@ -38177,6 +38177,8 @@ class AnnoIg {
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38177
38177
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38178
38178
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igElem.endPos = prevPos;
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38179
38179
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ic.chain2igArray[chnid].push(igElem);
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38180
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+
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38181
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+
if(me.bNode) return {html: '', html2: '', html3: ''};
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38180
38182
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let titleSpace = 120;
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38181
38183
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38182
38184
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let linkStr = 'icn3d-link icn3d-blue';
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@@ -38233,10 +38235,13 @@ class AnnoIg {
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38233
38235
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html += '</div>';
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38234
38236
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38235
38237
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let igArray = ic.chain2igArray[chnid];
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38238
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+
if(igArray.length == 0) return {html: '', html2: '', html3: ''};
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38236
38239
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let rangeArray = [], titleArray = [], fullTitleArray = [], domainArray = [];
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38237
38240
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for(let i = 0, il = igArray.length; i < il; ++i) {
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38238
38241
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let domainid = igArray[i].domainid;
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38239
38242
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let info = ic.domainid2info[domainid];
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38243
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+
if(!info) continue;
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38244
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+
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38240
38245
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let tmscore = info.score;
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38241
38246
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let igType = ic.ref2igtype[info.refpdbname];
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38242
38247
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titleArray.push(igType + ' (TM:' + parseFloat(tmscore).toFixed(2) + ')');
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@@ -38247,6 +38252,7 @@ class AnnoIg {
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38247
38252
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range.locs = [{"from":igArray[i].startPos, "to":igArray[i].endPos}];
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38248
38253
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rangeArray.push(range);
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38249
38254
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}
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38255
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+
if(titleArray.length == 0) return {html: '', html2: '', html3: ''};
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38250
38256
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38251
38257
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// add tracks for the summary view
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38252
38258
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for(let i = 0, il = fromArray.length; i < il; ++i) {
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@@ -66924,7 +66930,7 @@ class Dssp {
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66924
66930
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if(type == 'igstrand' || type == 'IgStrand') {
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66925
66931
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// iGStrand reference numbers were adjusted when showing in sequences
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66926
66932
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if(me.bNode) {
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66927
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-
for(let chnid in ic.chains) {
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66933
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+
for(let chnid in ic.chains) {
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66928
66934
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let atom = ic.firstAtomObjCls.getFirstAtomObj(ic.chains[chnid]);
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66929
66935
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if(ic.proteins.hasOwnProperty(atom.serial)) {
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66930
66936
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let giSeq = [];
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@@ -66988,21 +66994,22 @@ class Dssp {
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66988
66994
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refData += '}\n';
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66989
66995
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}
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66990
66996
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*/
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66997
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+
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66991
66998
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if(bIgDomain) {
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66992
66999
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refData += '"igs": [\n';
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66993
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-
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66994
67000
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for(let chnid in ic.chains) {
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66995
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let igArray = ic.chain2igArray[chnid];
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66996
67002
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66997
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-
if(igArray.length > 0) {
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67003
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+
if(igArray && igArray.length > 0) {
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66998
67004
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refData += '{"' + chnid + '": {\n';
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66999
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67000
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for(let i = 0, il = igArray.length; i < il; ++i) {
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67001
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let startPos = igArray[i].startPos;
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67002
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let endPos = igArray[i].endPos;
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67003
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let domainid = igArray[i].domainid;
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67004
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-
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67005
67010
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let info = ic.domainid2info[domainid];
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67011
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+
if(!info) continue;
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67012
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+
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67006
67013
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refData += '"' + domainid + '": {\n';
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67007
67014
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67008
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refData += '"refpdbname":"' + info.refpdbname + '", "score":' + info.score + ', "seqid":' + info.seqid + ', "nresAlign":' + info.nresAlign + ', "data": [';
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