icn3d 3.28.1 → 3.28.3

package/icn3d.module.js

@@ -41826,11 +41826,11 @@ class AddTrack {
             let exonArray = (acc2exons) ? acc2exons[trackTitleArray[j]] : undefined;
             this.showNewTrack(chainid, title, text, undefined, undefined, type, undefined, bMsa, fromArray, toArray, seqStartLen, exonArray);
         }
-
+/*
         // set color for the master seq
         if(trackSeqArray.length > 0) {
-            if(ic.queryresi2score === undefined) ic.queryresi2score = {};
-            if(ic.queryresi2score[chainid] === undefined) ic.queryresi2score[chainid] = {};
+            if(ic.queryresi2score === undefined) ic.queryresi2score = {}
+            if(ic.queryresi2score[chainid] === undefined) ic.queryresi2score[chainid] = {}
 
             let nSeq = trackSeqArray.length;
             for(let resi in resi2cntSameRes) {
@@ -41861,6 +41861,7 @@ class AddTrack {
 
             //me.htmlCls.clickMenuCls.setLogCmd('color align custom | ' + chainid + ' | range ' + start + '_' + end + ' | ' + resiScoreStr, true);
         }
+        */
     }
 
     processAccList(acclist) { let ic = this.icn3d; ic.icn3dui;
@@ -42861,23 +42862,26 @@ class ShowAnno {
             let structure = chnid.substr(0, chnid.indexOf('_'));
             // UniProt or NCBI protein accession
             if(structure.length > 5) {
-                let refseqid, url;
+                let url;
                 if(ic.uniprot2acc && ic.uniprot2acc[structure]) {
-                    refseqid = ic.uniprot2acc[structure];
+                    ic.uniprot2acc[structure];
                 }
                 else {
-                    try {
-                        if(!ic.uniprot2acc) ic.uniprot2acc = {};
-                        url = me.htmlCls.baseUrl + "vastdyn/vastdyn.cgi?uniprot2refseq=" + structure;
-                        let result = await me.getAjaxPromise(url, 'jsonp');
-                        refseqid = (result && result.refseq) ? result.refseq : structure;
+                    ic.uniprot2acc = {};
 
-                        ic.uniprot2acc[structure] = refseqid;
-                    }
-                    catch {
-                        console.log("Problem in getting protein accession from UniProt ID...");
-                        refseqid = structure;
-                    }
+                    // try {
+                    //     if(!ic.uniprot2acc) ic.uniprot2acc = {};
+                    // the following query is slow due to the missing index in DB
+                    //     url = me.htmlCls.baseUrl + "vastdyn/vastdyn.cgi?uniprot2refseq=" + structure;
+                    //     let result = await me.getAjaxPromise(url, 'jsonp');
+                    //     refseqid = (result && result.refseq) ? result.refseq : structure;
+
+                    //     ic.uniprot2acc[structure] = refseqid;
+                    // }
+                    // catch {
+                    //     console.log("Problem in getting protein accession from UniProt ID...")
+                    //     refseqid = structure;
+                    // }
                 }
 
                 // get Gene info from protein name

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "icn3d",
-  "version": "3.28.1",
+  "version": "3.28.3",
   "main": "./icn3d.js",
   "exports": {
     ".": {