icn3d 3.28.1 → 3.28.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/icn3d.js +20 -16
- package/icn3d.min.js +1 -1
- package/icn3d.module.js +20 -16
- package/package.json +1 -1
package/icn3d.js
CHANGED
|
@@ -40925,11 +40925,11 @@ class AddTrack {
|
|
|
40925
40925
|
let exonArray = (acc2exons) ? acc2exons[trackTitleArray[j]] : undefined;
|
|
40926
40926
|
this.showNewTrack(chainid, title, text, undefined, undefined, type, undefined, bMsa, fromArray, toArray, seqStartLen, exonArray);
|
|
40927
40927
|
}
|
|
40928
|
-
|
|
40928
|
+
/*
|
|
40929
40929
|
// set color for the master seq
|
|
40930
40930
|
if(trackSeqArray.length > 0) {
|
|
40931
|
-
if(ic.queryresi2score === undefined) ic.queryresi2score = {}
|
|
40932
|
-
if(ic.queryresi2score[chainid] === undefined) ic.queryresi2score[chainid] = {}
|
|
40931
|
+
if(ic.queryresi2score === undefined) ic.queryresi2score = {}
|
|
40932
|
+
if(ic.queryresi2score[chainid] === undefined) ic.queryresi2score[chainid] = {}
|
|
40933
40933
|
|
|
40934
40934
|
let nSeq = trackSeqArray.length;
|
|
40935
40935
|
for(let resi in resi2cntSameRes) {
|
|
@@ -40960,6 +40960,7 @@ class AddTrack {
|
|
|
40960
40960
|
|
|
40961
40961
|
//me.htmlCls.clickMenuCls.setLogCmd('color align custom | ' + chainid + ' | range ' + start + '_' + end + ' | ' + resiScoreStr, true);
|
|
40962
40962
|
}
|
|
40963
|
+
*/
|
|
40963
40964
|
}
|
|
40964
40965
|
|
|
40965
40966
|
processAccList(acclist) { let ic = this.icn3d; ic.icn3dui;
|
|
@@ -41960,23 +41961,26 @@ class ShowAnno {
|
|
|
41960
41961
|
let structure = chnid.substr(0, chnid.indexOf('_'));
|
|
41961
41962
|
// UniProt or NCBI protein accession
|
|
41962
41963
|
if(structure.length > 5) {
|
|
41963
|
-
let
|
|
41964
|
+
let url;
|
|
41964
41965
|
if(ic.uniprot2acc && ic.uniprot2acc[structure]) {
|
|
41965
|
-
|
|
41966
|
+
ic.uniprot2acc[structure];
|
|
41966
41967
|
}
|
|
41967
41968
|
else {
|
|
41968
|
-
|
|
41969
|
-
if(!ic.uniprot2acc) ic.uniprot2acc = {};
|
|
41970
|
-
url = me.htmlCls.baseUrl + "vastdyn/vastdyn.cgi?uniprot2refseq=" + structure;
|
|
41971
|
-
let result = await me.getAjaxPromise(url, 'jsonp');
|
|
41972
|
-
refseqid = (result && result.refseq) ? result.refseq : structure;
|
|
41969
|
+
ic.uniprot2acc = {};
|
|
41973
41970
|
|
|
41974
|
-
|
|
41975
|
-
}
|
|
41976
|
-
|
|
41977
|
-
|
|
41978
|
-
|
|
41979
|
-
|
|
41971
|
+
// try {
|
|
41972
|
+
// if(!ic.uniprot2acc) ic.uniprot2acc = {};
|
|
41973
|
+
// the following query is slow due to the missing index in DB
|
|
41974
|
+
// url = me.htmlCls.baseUrl + "vastdyn/vastdyn.cgi?uniprot2refseq=" + structure;
|
|
41975
|
+
// let result = await me.getAjaxPromise(url, 'jsonp');
|
|
41976
|
+
// refseqid = (result && result.refseq) ? result.refseq : structure;
|
|
41977
|
+
|
|
41978
|
+
// ic.uniprot2acc[structure] = refseqid;
|
|
41979
|
+
// }
|
|
41980
|
+
// catch {
|
|
41981
|
+
// console.log("Problem in getting protein accession from UniProt ID...")
|
|
41982
|
+
// refseqid = structure;
|
|
41983
|
+
// }
|
|
41980
41984
|
}
|
|
41981
41985
|
|
|
41982
41986
|
// get Gene info from protein name
|