homegraph 0.9.10 → 1.1.1

package/dist/mcp/proxy.js

@@ -52,6 +52,7 @@ var __importStar = (this && this.__importStar) || (function () {
     };
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.logAttachedDaemon = logAttachedDaemon;
 exports.runProxy = runProxy;
 exports.connectWithHello = connectWithHello;
 exports.runLocalHandshakeProxy = runLocalHandshakeProxy;
@@ -60,12 +61,31 @@ const net = __importStar(require("net"));
 const wasm_runtime_flags_1 = require("../extraction/wasm-runtime-flags");
 const daemon_1 = require("./daemon");
 const ppid_watchdog_1 = require("./ppid-watchdog");
+const stdin_teardown_1 = require("./stdin-teardown");
 const version_1 = require("./version");
 const session_1 = require("./session");
 const server_instructions_1 = require("./server-instructions");
 const tools_1 = require("./tools");
+const telemetry_1 = require("../telemetry");
 /** Default poll cadence for the PPID watchdog (same as the direct server). */
 const DEFAULT_PPID_POLL_MS = 5000;
+/**
+ * Env var that opts INTO the "attached to shared daemon" log line. Off by
+ * default: the line is benign INFO, but MCP hosts render any server stderr at
+ * error level (and append an `undefined` data field), so on every session start
+ * a healthy attach showed up as `[error] … undefined`. Set to `1` to surface it
+ * when debugging daemon attach. (#618; approach from #640 by @mturac)
+ */
+const LOG_ATTACH_ENV = 'HOMEGRAPH_MCP_LOG_ATTACH';
+/**
+ * Log a successful daemon attach — gated behind {@link LOG_ATTACH_ENV} so it is
+ * silent by default (see #618). Exported for tests.
+ */
+function logAttachedDaemon(socketPath, hello) {
+    if (process.env[LOG_ATTACH_ENV] !== '1')
+        return;
+    process.stderr.write(`[HomeGraph MCP] Attached to shared daemon on ${socketPath} (pid ${hello.pid}, v${hello.homegraph}).\n`);
+}
 /**
  * Attempt to connect to the daemon at `socketPath` and pipe stdio through it.
  *
@@ -81,7 +101,7 @@ const DEFAULT_PPID_POLL_MS = 5000;
  * server. (We accept the cost of two concurrent servers in this case as the
  * price of never silently running a stale daemon against newer client code.)
  */
-async function runProxy(socketPath, expectedVersion = version_1.CodeGraphPackageVersion) {
+async function runProxy(socketPath, expectedVersion = version_1.HomeGraphPackageVersion) {
     // POSIX: refuse to connect to a stale socket file that points at no
     // listening process. `fs.existsSync` is a cheap pre-check; a real
     // ECONNREFUSED below catches the rare "exists but unbound" race.
@@ -98,12 +118,12 @@ async function runProxy(socketPath, expectedVersion = version_1.CodeGraphPackage
         return { outcome: 'fallback-needed', reason: hello.message };
     }
     if (hello.homegraph !== expectedVersion) {
-        process.stderr.write(`[CodeGraph MCP] Found a daemon on ${socketPath} but version (${hello.homegraph}) ` +
+        process.stderr.write(`[HomeGraph MCP] Found a daemon on ${socketPath} but version (${hello.homegraph}) ` +
             `differs from ours (${expectedVersion}); falling back to direct mode.\n`);
         socket.destroy();
         return { outcome: 'fallback-needed', reason: 'version mismatch' };
     }
-    process.stderr.write(`[CodeGraph MCP] Attached to shared daemon on ${socketPath} (pid ${hello.pid}, v${hello.homegraph}).\n`);
+    logAttachedDaemon(socketPath, hello);
     sendClientHello(socket);
     startPpidWatchdog(socket);
     await pipeUntilClose(socket);
@@ -118,11 +138,21 @@ async function runProxy(socketPath, expectedVersion = version_1.CodeGraphPackage
  * / version-mismatched. Unlike {@link runProxy} it does NOT pipe — the caller
  * owns the socket. Used by the local-handshake proxy's background connect.
  */
-async function connectWithHello(socketPath, expectedVersion = version_1.CodeGraphPackageVersion) {
+async function connectWithHello(socketPath, expectedVersion = version_1.HomeGraphPackageVersion) {
     if (process.platform !== 'win32' && !fs.existsSync(socketPath))
         return null;
     const socket = net.createConnection(socketPath);
     socket.setEncoding('utf8');
+    // Keep an 'error' listener attached for the socket's ENTIRE life. readHelloLine
+    // attaches its own and then REMOVES it on success (its cleanup()), which left a
+    // window — from here until the caller attaches its onDaemonLost handler — where
+    // a socket 'error' had NO listener. In Node an unhandled socket 'error' is
+    // re-thrown as an uncaughtException, which the global fatal handler turns into
+    // process.exit(1); to an MCP client that surfaces as a bare "Transport closed"
+    // (#974). The window is rarely hit on a healthy FS but is common on flaky
+    // AF_UNIX-over-DrvFs (WSL2 /mnt drives). A no-op guard makes the error
+    // recoverable: the follow-up 'close' drives the caller's normal fallback.
+    socket.on('error', () => { });
     const hello = await readHelloLine(socket).catch(() => null);
     if (!hello) {
         socket.destroy();
@@ -131,12 +161,12 @@ async function connectWithHello(socketPath, expectedVersion = version_1.CodeGrap
     if (hello.homegraph !== expectedVersion) {
         // A daemon IS up but it's the wrong version — definitive, not a "not yet".
         // Don't poll; the caller serves in-process so we never run stale-vs-new.
-        process.stderr.write(`[CodeGraph MCP] Found a daemon on ${socketPath} but version (${hello.homegraph}) ` +
+        process.stderr.write(`[HomeGraph MCP] Found a daemon on ${socketPath} but version (${hello.homegraph}) ` +
             `differs from ours (${expectedVersion}); serving this session in-process.\n`);
         socket.destroy();
         return 'version-mismatch';
     }
-    process.stderr.write(`[CodeGraph MCP] Attached to shared daemon on ${socketPath} (pid ${hello.pid}, v${hello.homegraph}).\n`);
+    logAttachedDaemon(socketPath, hello);
     sendClientHello(socket);
     return socket;
 }
@@ -177,6 +207,10 @@ async function runLocalHandshakeProxy(deps) {
     let daemonStatus = 'connecting';
     let daemonSocket = null;
     let clientInitId = undefined; // suppress the daemon's reply to the forwarded initialize
+    // Telemetry attribution for the in-process fallback only — calls routed to
+    // the daemon are counted by the daemon's own session (which receives the
+    // forwarded initialize, clientInfo included), never double-counted here.
+    let telemetryClient;
     const pending = []; // client lines buffered until the daemon resolves
     let engine = null;
     let engineReady = null;
@@ -238,6 +272,7 @@ async function runLocalHandshakeProxy(deps) {
                 const params = (msg.params || {});
                 const result = await engine.getToolHandler().execute(params.name, params.arguments || {});
                 writeClient({ jsonrpc: '2.0', id, result });
+                (0, telemetry_1.getTelemetry)().recordUsage('mcp_tool', params.name, !result.isError, telemetryClient);
             }
             catch (err) {
                 writeClient({ jsonrpc: '2.0', id, error: { code: -32603, message: err instanceof Error ? err.message : String(err) } });
@@ -249,7 +284,7 @@ async function runLocalHandshakeProxy(deps) {
         else if (id !== undefined && msg.method !== 'initialize') {
             // A request we can't serve in-process (and the daemon is gone) — answer
             // with an error rather than let the host hang on a reply that won't come.
-            writeClient({ jsonrpc: '2.0', id, error: { code: -32603, message: 'CodeGraph daemon unavailable' } });
+            writeClient({ jsonrpc: '2.0', id, error: { code: -32603, message: 'HomeGraph daemon unavailable' } });
         }
         // initialize already answered locally; notifications (initialized) need no reply.
     };
@@ -289,6 +324,13 @@ async function runLocalHandshakeProxy(deps) {
             }
             if (msg.method === 'initialize') {
                 clientInitId = msg.id;
+                const initParams = (msg.params ?? {});
+                if (initParams.clientInfo) {
+                    telemetryClient = {
+                        name: typeof initParams.clientInfo.name === 'string' ? initParams.clientInfo.name : undefined,
+                        version: typeof initParams.clientInfo.version === 'string' ? initParams.clientInfo.version : undefined,
+                    };
+                }
                 writeClient({ jsonrpc: '2.0', id: msg.id, result: { protocolVersion: session_1.PROTOCOL_VERSION, capabilities: { tools: {} }, serverInfo: session_1.SERVER_INFO, instructions: server_instructions_1.SERVER_INSTRUCTIONS } });
                 routeToDaemon(line); // prime the daemon so it resolves the project (its reply is suppressed below)
             }
@@ -311,8 +353,11 @@ async function runLocalHandshakeProxy(deps) {
             }
         }
     });
-    process.stdin.on('end', shutdown);
-    process.stdin.on('close', shutdown);
+    // Shut down when stdin ends/closes — and also on a stdin `'error'`, which a
+    // socket-backed stdin (the VS Code stdio shape) can emit on client death
+    // instead of a clean close; destroying the stream stops a hung fd from
+    // busy-spinning the event loop (#799).
+    (0, stdin_teardown_1.treatStdinFailureAsShutdown)(shutdown);
     startPpidWatchdogNoSocket(shutdown);
     // ---- daemon connection (background) ----
     let socket = null;
@@ -322,7 +367,10 @@ async function runLocalHandshakeProxy(deps) {
     catch {
         socket = null;
     }
-    if (socket && !shuttingDown) {
+    // `!socket.destroyed`: the connect-window error guard above can absorb an
+    // 'error' that already destroyed the socket before we got here (#974) — treat
+    // a dead socket as "no daemon" so we cleanly fall back to the in-process engine.
+    if (socket && !socket.destroyed && !shuttingDown) {
         daemonSocket = socket;
         daemonStatus = 'ready';
         let sockBuf = '';
@@ -352,7 +400,7 @@ async function runLocalHandshakeProxy(deps) {
         });
         // The daemon going away does NOT end the session (#662). An MCP host can
         // SIGTERM the shared daemon when another session starts; if we exited here,
-        // this host would silently lose CodeGraph and any in-flight request would
+        // this host would silently lose HomeGraph and any in-flight request would
         // hang. Instead, fall back to the in-process engine for the rest of the
         // session and re-serve whatever the dead daemon never answered.
         const onDaemonLost = () => {
@@ -364,7 +412,7 @@ async function runLocalHandshakeProxy(deps) {
             }
             catch { /* ignore */ }
             daemonSocket = null;
-            process.stderr.write(`[CodeGraph MCP] Shared daemon connection lost; serving this session in-process (degraded), re-serving ${inflight.size} in-flight request(s).\n`);
+            process.stderr.write(`[HomeGraph MCP] Shared daemon connection lost; serving this session in-process (degraded), re-serving ${inflight.size} in-flight request(s).\n`);
             const orphaned = [...inflight.values()];
             inflight.clear();
             for (const line of orphaned)
@@ -383,7 +431,7 @@ async function runLocalHandshakeProxy(deps) {
     }
     else if (!shuttingDown) {
         daemonStatus = 'failed';
-        process.stderr.write('[CodeGraph MCP] Shared daemon unavailable; serving this session in-process (degraded).\n');
+        process.stderr.write('[HomeGraph MCP] Shared daemon unavailable; serving this session in-process (degraded).\n');
         const buffered = pending.splice(0);
         for (const line of buffered)
             await handleLocally(line);
@@ -407,7 +455,7 @@ function startPpidWatchdogNoSocket(onDeath) {
             isAlive: isProcessAliveLocal,
         });
         if (reason) {
-            process.stderr.write(`[CodeGraph MCP] Parent process exited (${reason}); shutting down.\n`);
+            process.stderr.write(`[HomeGraph MCP] Parent process exited (${reason}); shutting down.\n`);
             onDeath();
         }
     }, pollMs);
@@ -497,13 +545,22 @@ function pipeUntilClose(socket) {
             catch { /* ignore */ }
             done();
         });
-        process.stdin.on('close', () => {
+        // 'close' and 'error' both tear down: a socket-backed stdin can fail with
+        // an 'error' (ECONNRESET/hangup) rather than a clean close; destroying it
+        // stops a hung fd from busy-spinning the event loop (#799).
+        const teardown = () => {
+            try {
+                process.stdin.destroy();
+            }
+            catch { /* ignore */ }
             try {
                 socket.destroy();
             }
             catch { /* ignore */ }
             done();
-        });
+        };
+        process.stdin.on('close', teardown);
+        process.stdin.on('error', teardown);
         socket.on('data', (chunk) => {
             try {
                 process.stdout.write(chunk);
@@ -513,7 +570,7 @@ function pipeUntilClose(socket) {
         socket.on('end', () => done());
         socket.on('close', () => done());
         socket.on('error', (err) => {
-            process.stderr.write(`[CodeGraph MCP] daemon socket error: ${err.message}\n`);
+            process.stderr.write(`[HomeGraph MCP] daemon socket error: ${err.message}\n`);
             done();
         });
     });
@@ -541,7 +598,7 @@ function startPpidWatchdog(socket) {
             isAlive: isProcessAliveLocal,
         });
         if (reason) {
-            process.stderr.write(`[CodeGraph MCP] Parent process exited (${reason}); shutting down.\n`);
+            process.stderr.write(`[HomeGraph MCP] Parent process exited (${reason}); shutting down.\n`);
             try {
                 socket.destroy();
             }

package/dist/mcp/proxy.js.map

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package/dist/mcp/server-instructions.d.ts

@@ -3,17 +3,32 @@
  *
  * MCP clients (Claude Code, Cursor, opencode, LangChain, OpenAI Agent
  * SDK, …) surface this text in the agent's system prompt automatically,
- * giving the agent a high-level playbook for the codegraph toolset
+ * giving the agent a high-level playbook for the homegraph toolset
  * before it sees individual tool descriptions.
  *
  * Goals when editing this:
- *   - Tool selection by intent (which tool for which question)
- *   - Common chains (refactor planning = X then Y)
- *   - Anti-patterns (don't grep when homegraph_search is faster)
+ *   - Lead the agent to homegraph_explore for any structural/flow question
+ *   - Reinforce "explore instead of Read/Grep" for indexed code
+ *   - Anti-patterns (don't re-verify with grep; don't hand-reconstruct flows)
  *
  * Keep it tight. The agent reads this every session — long instructions
- * burn tokens. Reference only tools that exist on `main`; gate any
- * conditional tools behind feature checks if/when they ship.
+ * burn tokens. The DEFAULT MCP surface is `homegraph_explore` ALONE (see
+ * DEFAULT_MCP_TOOLS in tools.ts) — reference only that tool here. The other
+ * tools (node/search/callers/…) stay defined and are re-enablable via
+ * HOMEGRAPH_MCP_TOOLS, but they are NOT listed to agents, so don't name them.
  */
-export declare const SERVER_INSTRUCTIONS = "# Codegraph \u2014 code intelligence over an indexed knowledge graph\n\nCodegraph is a SQLite knowledge graph of every symbol, edge, and file\nin the workspace. Reads are sub-millisecond; the index lags writes by\nabout a second through the file watcher. Consult it BEFORE writing or\nediting code, not during.\n\n## Answer directly \u2014 don't delegate exploration\n\nFor \"how does X work\", architecture, trace, or where-is-X questions,\nanswer DIRECTLY \u2014 usually with ONE `homegraph_explore` call.\n`homegraph_explore` takes either a natural-language question or a bag of\nsymbol/file names and returns the verbatim source of the relevant symbols\ngrouped by file, so it is Read-equivalent and most often the ONLY\ncodegraph call you need. Codegraph IS the pre-built search index \u2014 so\ndelegating the lookup to a separate file-reading sub-task/agent, or\nrunning your own grep + read loop, repeats work codegraph already did and\ncosts more for the same answer. Reach for raw Read/Grep only to confirm a\nspecific detail codegraph didn't cover. A direct codegraph answer is\ntypically one to a few calls; a grep/read exploration is dozens.\n\n## Tool selection by intent\n\n- **Almost any question \u2014 \"how does X work\", architecture, a bug, \"what/where is X\", or surveying an area** \u2192 `homegraph_explore` (PRIMARY \u2014 call FIRST; ONE capped call returns the verbatim source of the relevant symbols grouped by file; most often the ONLY call you need)\n- **\"How does X reach/become Y? / the flow / the path from X to Y\"** \u2192 `homegraph_explore`, naming the symbols that span the flow (e.g. `mutateElement renderScene`) \u2014 it surfaces the call path among them, including dynamic-dispatch hops (callbacks, React re-render, JSX children) grep can't follow\n- **\"What is the symbol named X?\" (just its location)** \u2192 `homegraph_search`\n- **\"What calls this?\" / \"What does this call?\" / \"What would changing this break?\"** \u2192 `homegraph_callers` / `homegraph_callees` / `homegraph_impact`\n- **One specific symbol's full source (esp. a body `homegraph_explore` trimmed), or an OVERLOADED name** \u2192 `homegraph_node` (with `includeCode`): for an ambiguous name it returns EVERY matching definition's body in one call, so you never Read a file to find the right overload\n- **\"What's in directory X?\"** \u2192 `homegraph_files`\n- **\"Is the index ready / what's its size?\"** \u2192 `homegraph_status`\n\n## Common chains\n\n- **Flow / \"how does X reach Y\"**: ONE `homegraph_explore` with the symbol names spanning the flow \u2014 it surfaces the call path among them (riding dynamic-dispatch hops) AND returns their source. No need to reconstruct the path with `homegraph_search` + `homegraph_callers`.\n- **Onboarding / understanding any area**: ONE `homegraph_explore` is usually the whole answer. Only follow up \u2014 `homegraph_node` for a specific symbol \u2014 if something is still unclear.\n- **Refactor planning**: `homegraph_search` \u2192 `homegraph_callers` \u2192 `homegraph_impact`. The blast-radius answer comes from impact, not from walking callers manually.\n- **Debugging a regression**: `homegraph_callers` of the suspected symbol; widen with `homegraph_impact` if an unexpected call appears.\n\n## Anti-patterns\n\n- **Trust codegraph's results \u2014 don't re-verify them with grep.** They come from a full AST parse; re-checking with grep is slower, less accurate, and wastes context.\n- **Don't grep first** when looking up a symbol by name \u2014 `homegraph_search` is faster and returns kind + location + signature.\n- **Don't chain `homegraph_search` + `homegraph_node`** to understand an area \u2014 ONE `homegraph_explore` returns the relevant symbols' source together in a single round-trip.\n- **Don't loop `homegraph_node` over many symbols** \u2014 one `homegraph_explore` call returns them all grouped by file, while each separate call re-reads the whole context and costs far more. Use `homegraph_node` for a single symbol.\n- **After editing, check the staleness banner.** When a tool response starts with \"\u26A0\uFE0F Some files referenced below were edited since the last index sync\u2026\", the listed files are pending re-index \u2014 Read those specific files for accurate content. Every file NOT in that banner is fresh, so still trust codegraph. `homegraph_status` also lists pending files under \"Pending sync\".\n\n## Limitations\n\n- If a tool reports the project isn't initialized, `.homegraph/` doesn't exist yet \u2014 offer to run `homegraph init -i` to build the index.\n- Index lags file writes by ~1 second.\n- Cross-file resolution is best-effort name matching; ambiguous calls may return multiple candidates.\n- No live correctness validation \u2014 that's still the TypeScript compiler / test suite / linter's job. Codegraph supplements those with structural context they don't have.\n";
+export declare const SERVER_INSTRUCTIONS = "# Codegraph \u2014 code intelligence over an indexed knowledge graph\n\nCodegraph is a SQLite knowledge graph of every symbol, edge, and file in\nthe workspace \u2014 pre-computed structure you would otherwise re-derive by\nreading files (cached intelligence: thousands of parse/trace decisions you\ndon't pay to re-reason each run). Reads are sub-millisecond; the index lags\nwrites by ~1s through the file watcher. Reach for it BEFORE *and* while\nwriting or editing code \u2014 not just for questions: one call returns the\nverbatim source PLUS who calls it and what it affects, so you edit with the\nblast radius in view. More accurate context, in far fewer tokens and\nround-trips than reading files yourself.\n\n## One tool: homegraph_explore \u2014 use it instead of reading files\n\nThere is a single tool, `homegraph_explore`, and it is Read-equivalent. It\ntakes either a natural-language question or a bag of symbol/file names and\nreturns the **verbatim, line-numbered source** of the relevant symbols\ngrouped by file \u2014 the same `<n>\\t<line>` shape `Read` gives you, safe to\n`Edit` from \u2014 PLUS the call path among them (including dynamic-dispatch hops\nlike callbacks, React re-render, and JSX children that grep can't follow) and\na blast-radius summary of what depends on them.\n\nWhether you're answering \"how does X work\" or implementing a change (fixing a\nbug, adding a feature), call `homegraph_explore` before you Read. ONE call\nusually answers the whole question. Codegraph IS the pre-built search index \u2014\nso running your own grep + read loop, or delegating the lookup to a separate\nfile-reading sub-task/agent, repeats work homegraph already did and costs more\nfor the same answer. A direct homegraph answer is typically one to a few\ncalls; a grep/read exploration is dozens.\n\n## How to query\n\n- **Almost any question \u2014 \"how does X work\", architecture, a bug, \"what/where is X\", or surveying an area** \u2192 `homegraph_explore` with a natural-language question or the relevant names. ONE capped call returns the verbatim source grouped by file; most often the ONLY call you need.\n- **\"How does X reach/become Y? / the flow / the path from X to Y\"** \u2192 `homegraph_explore`, naming the symbols that span the flow (e.g. `mutateElement renderScene`) \u2014 it surfaces the call path among them, riding dynamic-dispatch hops, and returns their source.\n- **Reading or editing a file/symbol you can name** \u2192 put its name or file path in the `homegraph_explore` query \u2014 it returns that current line-numbered source (safe to `Edit` from) with the call path and blast radius attached, so you don't Read it separately. For an overloaded name it returns every matching definition's body in one call.\n- **Need more?** Call `homegraph_explore` again with more specific names \u2014 treat the source it returns as already Read.\n\n## Anti-patterns\n\n- **Trust homegraph's results \u2014 don't re-verify them with grep.** They come from a full AST parse; re-checking with grep is slower, less accurate, and wastes context.\n- **Don't grep or Read first** to find or understand indexed code \u2014 ONE `homegraph_explore` returns the relevant symbols' source together in a single round-trip. Reach for raw `Read`/`Grep` only to confirm a specific detail homegraph didn't cover, or for what homegraph doesn't index (configs, docs).\n- **Don't reconstruct a flow by hand** \u2014 name the endpoints in one `homegraph_explore` and it surfaces the path between them, dynamic-dispatch hops included.\n- **After editing, check the staleness banner.** When a tool response starts with \"\u26A0\uFE0F Some files referenced below were edited since the last index sync\u2026\", the listed files are pending re-index \u2014 Read those specific files for accurate content. Every file NOT in that banner is fresh, so still trust homegraph. A different, rarer banner \u2014 \"\u26A0\uFE0F HomeGraph auto-sync is DISABLED\u2026\" \u2014 means live watching stopped entirely (the whole index is frozen, not just a few files); until it's resolved, Read files directly to confirm anything that may have changed.\n\n## Limitations\n\n- If a tool reports a project isn't indexed (no `.homegraph/`), stop calling homegraph tools for that project for the rest of the session and use your built-in tools there instead. Indexing is the user's decision \u2014 mention they can run `homegraph init` if it comes up, but don't run it yourself.\n- Index lags file writes by ~1 second.\n- Cross-file resolution is best-effort name matching; ambiguous calls may return multiple candidates.\n- No live correctness validation \u2014 that's still the TypeScript compiler / test suite / linter's job. Codegraph supplements those with structural context they don't have.\n";
+/**
+ * Instructions variant sent when the server's own root has NO homegraph index.
+ *
+ * The tools are still exposed (gating tool availability on whether `./` has an
+ * index is the bug behind #964: it breaks monorepos where only sub-projects are
+ * indexed, and a server that started before `homegraph init` never surfaces the
+ * tools afterward). Instead of an "inactive" note, this variant tells the agent
+ * homegraph works **per project**: there's no default project to query, so pass
+ * a `projectPath` to any project that HAS a `.homegraph/`. The full single-
+ * project playbook ({@link SERVER_INSTRUCTIONS}) is sent instead when the root
+ * IS indexed, so the common case stays tight.
+ */
+export declare const SERVER_INSTRUCTIONS_NO_ROOT_INDEX = "# Codegraph \u2014 available (per-project; pass projectPath)\n\nCodegraph is a SQLite knowledge graph of a codebase's symbols, edges, and\nfiles: one `homegraph_explore` call returns the verbatim, line-numbered source\nof the relevant symbols PLUS the call paths between them and a blast-radius\nsummary \u2014 replacing a grep + Read loop with one round-trip.\n\nThis server started somewhere with no `.homegraph/` of its own, so there is no\ndefault project \u2014 but the tools are available and work **per project**:\n\n- To query a project that HAS a `.homegraph/` index (e.g. a service inside a\n  monorepo, or a second repo), pass its path as `projectPath` to\n  `homegraph_explore` (and any other homegraph tool). Codegraph resolves the\n  nearest `.homegraph/` at or above that path and answers from it \u2014 for as many\n  projects as you like in one session.\n- For a project with no `.homegraph/`, use your built-in tools (Read/Grep/Glob)\n  for that project. Indexing is the user's decision \u2014 don't run it yourself, but\n  if it comes up they can run `homegraph init` in a project to enable homegraph\n  there (a new index is picked up live, no restart).\n";
 //# sourceMappingURL=server-instructions.d.ts.map

package/dist/mcp/server-instructions.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server-instructions.d.ts","sourceRoot":"","sources":["../../src/mcp/server-instructions.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AACH,eAAO,MAAM,mBAAmB,0yJAoD/B,CAAC"}
+{"version":3,"file":"server-instructions.d.ts","sourceRoot":"","sources":["../../src/mcp/server-instructions.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AACH,eAAO,MAAM,mBAAmB,qsJAkD/B,CAAC;AAEF;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,iCAAiC,4pCAmB7C,CAAC"}

package/dist/mcp/server-instructions.js

@@ -1,74 +1,106 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.SERVER_INSTRUCTIONS = void 0;
+exports.SERVER_INSTRUCTIONS_NO_ROOT_INDEX = exports.SERVER_INSTRUCTIONS = void 0;
 /**
  * Server-level instructions emitted in the MCP `initialize` response.
  *
  * MCP clients (Claude Code, Cursor, opencode, LangChain, OpenAI Agent
  * SDK, …) surface this text in the agent's system prompt automatically,
- * giving the agent a high-level playbook for the codegraph toolset
+ * giving the agent a high-level playbook for the homegraph toolset
  * before it sees individual tool descriptions.
  *
  * Goals when editing this:
- *   - Tool selection by intent (which tool for which question)
- *   - Common chains (refactor planning = X then Y)
- *   - Anti-patterns (don't grep when homegraph_search is faster)
+ *   - Lead the agent to homegraph_explore for any structural/flow question
+ *   - Reinforce "explore instead of Read/Grep" for indexed code
+ *   - Anti-patterns (don't re-verify with grep; don't hand-reconstruct flows)
  *
  * Keep it tight. The agent reads this every session — long instructions
- * burn tokens. Reference only tools that exist on `main`; gate any
- * conditional tools behind feature checks if/when they ship.
+ * burn tokens. The DEFAULT MCP surface is `homegraph_explore` ALONE (see
+ * DEFAULT_MCP_TOOLS in tools.ts) — reference only that tool here. The other
+ * tools (node/search/callers/…) stay defined and are re-enablable via
+ * HOMEGRAPH_MCP_TOOLS, but they are NOT listed to agents, so don't name them.
  */
-exports.SERVER_INSTRUCTIONS = `# Codegraph — code intelligence over an indexed knowledge graph
-
-Codegraph is a SQLite knowledge graph of every symbol, edge, and file
-in the workspace. Reads are sub-millisecond; the index lags writes by
-about a second through the file watcher. Consult it BEFORE writing or
-editing code, not during.
-
-## Answer directly — don't delegate exploration
-
-For "how does X work", architecture, trace, or where-is-X questions,
-answer DIRECTLY — usually with ONE \`homegraph_explore\` call.
-\`homegraph_explore\` takes either a natural-language question or a bag of
-symbol/file names and returns the verbatim source of the relevant symbols
-grouped by file, so it is Read-equivalent and most often the ONLY
-codegraph call you need. Codegraph IS the pre-built search index — so
-delegating the lookup to a separate file-reading sub-task/agent, or
-running your own grep + read loop, repeats work codegraph already did and
-costs more for the same answer. Reach for raw Read/Grep only to confirm a
-specific detail codegraph didn't cover. A direct codegraph answer is
-typically one to a few calls; a grep/read exploration is dozens.
-
-## Tool selection by intent
-
-- **Almost any question — "how does X work", architecture, a bug, "what/where is X", or surveying an area** → \`homegraph_explore\` (PRIMARY — call FIRST; ONE capped call returns the verbatim source of the relevant symbols grouped by file; most often the ONLY call you need)
-- **"How does X reach/become Y? / the flow / the path from X to Y"** → \`homegraph_explore\`, naming the symbols that span the flow (e.g. \`mutateElement renderScene\`) — it surfaces the call path among them, including dynamic-dispatch hops (callbacks, React re-render, JSX children) grep can't follow
-- **"What is the symbol named X?" (just its location)** → \`homegraph_search\`
-- **"What calls this?" / "What does this call?" / "What would changing this break?"** → \`homegraph_callers\` / \`homegraph_callees\` / \`homegraph_impact\`
-- **One specific symbol's full source (esp. a body \`homegraph_explore\` trimmed), or an OVERLOADED name** → \`homegraph_node\` (with \`includeCode\`): for an ambiguous name it returns EVERY matching definition's body in one call, so you never Read a file to find the right overload
-- **"What's in directory X?"** → \`homegraph_files\`
-- **"Is the index ready / what's its size?"** → \`homegraph_status\`
-
-## Common chains
-
-- **Flow / "how does X reach Y"**: ONE \`homegraph_explore\` with the symbol names spanning the flow — it surfaces the call path among them (riding dynamic-dispatch hops) AND returns their source. No need to reconstruct the path with \`homegraph_search\` + \`homegraph_callers\`.
-- **Onboarding / understanding any area**: ONE \`homegraph_explore\` is usually the whole answer. Only follow up — \`homegraph_node\` for a specific symbol — if something is still unclear.
-- **Refactor planning**: \`homegraph_search\` → \`homegraph_callers\` → \`homegraph_impact\`. The blast-radius answer comes from impact, not from walking callers manually.
-- **Debugging a regression**: \`homegraph_callers\` of the suspected symbol; widen with \`homegraph_impact\` if an unexpected call appears.
-
-## Anti-patterns
-
-- **Trust codegraph's results — don't re-verify them with grep.** They come from a full AST parse; re-checking with grep is slower, less accurate, and wastes context.
-- **Don't grep first** when looking up a symbol by name — \`homegraph_search\` is faster and returns kind + location + signature.
-- **Don't chain \`homegraph_search\` + \`homegraph_node\`** to understand an area — ONE \`homegraph_explore\` returns the relevant symbols' source together in a single round-trip.
-- **Don't loop \`homegraph_node\` over many symbols** — one \`homegraph_explore\` call returns them all grouped by file, while each separate call re-reads the whole context and costs far more. Use \`homegraph_node\` for a single symbol.
-- **After editing, check the staleness banner.** When a tool response starts with "⚠️ Some files referenced below were edited since the last index sync…", the listed files are pending re-index — Read those specific files for accurate content. Every file NOT in that banner is fresh, so still trust codegraph. \`homegraph_status\` also lists pending files under "Pending sync".
-
-## Limitations
-
-- If a tool reports the project isn't initialized, \`.homegraph/\` doesn't exist yet — offer to run \`homegraph init -i\` to build the index.
-- Index lags file writes by ~1 second.
-- Cross-file resolution is best-effort name matching; ambiguous calls may return multiple candidates.
-- No live correctness validation — that's still the TypeScript compiler / test suite / linter's job. Codegraph supplements those with structural context they don't have.
+exports.SERVER_INSTRUCTIONS = `# Codegraph — code intelligence over an indexed knowledge graph
+
+Codegraph is a SQLite knowledge graph of every symbol, edge, and file in
+the workspace — pre-computed structure you would otherwise re-derive by
+reading files (cached intelligence: thousands of parse/trace decisions you
+don't pay to re-reason each run). Reads are sub-millisecond; the index lags
+writes by ~1s through the file watcher. Reach for it BEFORE *and* while
+writing or editing code — not just for questions: one call returns the
+verbatim source PLUS who calls it and what it affects, so you edit with the
+blast radius in view. More accurate context, in far fewer tokens and
+round-trips than reading files yourself.
+
+## One tool: homegraph_explore — use it instead of reading files
+
+There is a single tool, \`homegraph_explore\`, and it is Read-equivalent. It
+takes either a natural-language question or a bag of symbol/file names and
+returns the **verbatim, line-numbered source** of the relevant symbols
+grouped by file — the same \`<n>\\t<line>\` shape \`Read\` gives you, safe to
+\`Edit\` from — PLUS the call path among them (including dynamic-dispatch hops
+like callbacks, React re-render, and JSX children that grep can't follow) and
+a blast-radius summary of what depends on them.
+
+Whether you're answering "how does X work" or implementing a change (fixing a
+bug, adding a feature), call \`homegraph_explore\` before you Read. ONE call
+usually answers the whole question. Codegraph IS the pre-built search index —
+so running your own grep + read loop, or delegating the lookup to a separate
+file-reading sub-task/agent, repeats work homegraph already did and costs more
+for the same answer. A direct homegraph answer is typically one to a few
+calls; a grep/read exploration is dozens.
+
+## How to query
+
+- **Almost any question — "how does X work", architecture, a bug, "what/where is X", or surveying an area** → \`homegraph_explore\` with a natural-language question or the relevant names. ONE capped call returns the verbatim source grouped by file; most often the ONLY call you need.
+- **"How does X reach/become Y? / the flow / the path from X to Y"** → \`homegraph_explore\`, naming the symbols that span the flow (e.g. \`mutateElement renderScene\`) — it surfaces the call path among them, riding dynamic-dispatch hops, and returns their source.
+- **Reading or editing a file/symbol you can name** → put its name or file path in the \`homegraph_explore\` query — it returns that current line-numbered source (safe to \`Edit\` from) with the call path and blast radius attached, so you don't Read it separately. For an overloaded name it returns every matching definition's body in one call.
+- **Need more?** Call \`homegraph_explore\` again with more specific names — treat the source it returns as already Read.
+
+## Anti-patterns
+
+- **Trust homegraph's results — don't re-verify them with grep.** They come from a full AST parse; re-checking with grep is slower, less accurate, and wastes context.
+- **Don't grep or Read first** to find or understand indexed code — ONE \`homegraph_explore\` returns the relevant symbols' source together in a single round-trip. Reach for raw \`Read\`/\`Grep\` only to confirm a specific detail homegraph didn't cover, or for what homegraph doesn't index (configs, docs).
+- **Don't reconstruct a flow by hand** — name the endpoints in one \`homegraph_explore\` and it surfaces the path between them, dynamic-dispatch hops included.
+- **After editing, check the staleness banner.** When a tool response starts with "⚠️ Some files referenced below were edited since the last index sync…", the listed files are pending re-index — Read those specific files for accurate content. Every file NOT in that banner is fresh, so still trust homegraph. A different, rarer banner — "⚠️ HomeGraph auto-sync is DISABLED…" — means live watching stopped entirely (the whole index is frozen, not just a few files); until it's resolved, Read files directly to confirm anything that may have changed.
+
+## Limitations
+
+- If a tool reports a project isn't indexed (no \`.homegraph/\`), stop calling homegraph tools for that project for the rest of the session and use your built-in tools there instead. Indexing is the user's decision — mention they can run \`homegraph init\` if it comes up, but don't run it yourself.
+- Index lags file writes by ~1 second.
+- Cross-file resolution is best-effort name matching; ambiguous calls may return multiple candidates.
+- No live correctness validation — that's still the TypeScript compiler / test suite / linter's job. Codegraph supplements those with structural context they don't have.
+`;
+/**
+ * Instructions variant sent when the server's own root has NO homegraph index.
+ *
+ * The tools are still exposed (gating tool availability on whether `./` has an
+ * index is the bug behind #964: it breaks monorepos where only sub-projects are
+ * indexed, and a server that started before `homegraph init` never surfaces the
+ * tools afterward). Instead of an "inactive" note, this variant tells the agent
+ * homegraph works **per project**: there's no default project to query, so pass
+ * a `projectPath` to any project that HAS a `.homegraph/`. The full single-
+ * project playbook ({@link SERVER_INSTRUCTIONS}) is sent instead when the root
+ * IS indexed, so the common case stays tight.
+ */
+exports.SERVER_INSTRUCTIONS_NO_ROOT_INDEX = `# Codegraph — available (per-project; pass projectPath)
+
+Codegraph is a SQLite knowledge graph of a codebase's symbols, edges, and
+files: one \`homegraph_explore\` call returns the verbatim, line-numbered source
+of the relevant symbols PLUS the call paths between them and a blast-radius
+summary — replacing a grep + Read loop with one round-trip.
+
+This server started somewhere with no \`.homegraph/\` of its own, so there is no
+default project — but the tools are available and work **per project**:
+
+- To query a project that HAS a \`.homegraph/\` index (e.g. a service inside a
+  monorepo, or a second repo), pass its path as \`projectPath\` to
+  \`homegraph_explore\` (and any other homegraph tool). Codegraph resolves the
+  nearest \`.homegraph/\` at or above that path and answers from it — for as many
+  projects as you like in one session.
+- For a project with no \`.homegraph/\`, use your built-in tools (Read/Grep/Glob)
+  for that project. Indexing is the user's decision — don't run it yourself, but
+  if it comes up they can run \`homegraph init\` in a project to enable homegraph
+  there (a new index is picked up live, no restart).
 `;
 //# sourceMappingURL=server-instructions.js.map

package/dist/mcp/server-instructions.js.map

@@ -1 +1 @@
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+{"version":3,"file":"server-instructions.js","sourceRoot":"","sources":["../../src/mcp/server-instructions.ts"],"names":[],"mappings":";;;AAAA;;;;;;;;;;;;;;;;;;GAkBG;AACU,QAAA,mBAAmB,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAkDlC,CAAC;AAEF;;;;;;;;;;;GAWG;AACU,QAAA,iCAAiC,GAAG;;;;;;;;;;;;;;;;;;;CAmBhD,CAAC"}

package/dist/mcp/session.d.ts

@@ -3,7 +3,7 @@
  * tools/list, tools/call) over a single {@link JsonRpcTransport}. It owns
  * per-client state only (which protocol version the client asked for, whether
  * it advertised `roots`, the one-shot roots/list latch); the heavyweight
- * resources (CodeGraph, watcher, ToolHandler) live in the shared
+ * resources (HomeGraph, watcher, ToolHandler) live in the shared
  * {@link MCPEngine} so daemon mode can collapse N inotify sets / DB handles
  * to one.
  *
@@ -39,6 +39,8 @@ export declare class MCPSession {
     private transport;
     private engine;
     private clientSupportsRoots;
+    /** From the initialize handshake — attributes usage rollups to the agent host. */
+    private clientInfo;
     private rootsAttempted;
     private resolvePromise;
     private explicitProjectPath;