higlass 1.12.3 → 1.13.0

package/README.md

@@ -14,9 +14,9 @@ genomic (e.g., Hi-C, ChIP-seq, or bed annotations) and other data (e.g., geograp
 identify salient outcomes of experimental perturbations, generate new hypotheses, and share
 the results with the community.
 
-A live instance can be found at [http://higlass.io](http://higlass.io). A [Docker container](https://github.com/higlass/higlass-docker) is available for running an instance locally, although we recommend using the [higlass-manage](https://github.com/pkerpedjiev/higlass-manage) package to start, stop and configure local instances.
+A live instance can be found at [https://higlass.io](https://higlass.io). A [Docker container](https://github.com/higlass/higlass-docker) is available for running an instance locally, although we recommend using the [higlass-manage](https://github.com/pkerpedjiev/higlass-manage) package to start, stop and configure local instances.
 
-For documentation about how to use and install HiGlass, please visit [http://docs.higlass.io](http://docs.higlass.io).
+For documentation about how to use and install HiGlass, please visit [https://docs.higlass.io](https://docs.higlass.io).
 
 ### Citation
 
@@ -113,7 +113,7 @@ const hgApi = window.hglib.viewer(
 * [HiGlass Manage](https://github.com/higlass/higlass-manage) - Easy to use interface for deploying a local HiGlass instance
 * [HiGlass Docker](https://github.com/higlass/higlass-docker) - Build an image containing all the components necessary to deploy HiGlass
 * [HiGlass Server](https://github.com/higlass/higlass-server) - Server component for serving multi-resolution data
-* [HiGlass App](https://github.com/higlass/higlass-app) - The code for the web application hosted at http://higlass.io
+* [HiGlass App](https://github.com/higlass/higlass-app) - The code for the web application hosted at https://higlass.io
 * [Cooler](https://github.com/mirnylab/cooler) - Package for efficient storage of and access to sparse 2D data
 
 ### License

package/app/globals.d.ts

@@ -0,0 +1,11 @@
+export {}
+/* eslint-disable */
+declare global {
+  interface Window {
+    higlassTracksByType?: {
+      [trackType: string]: {
+        config: import('./scripts/configs/tracks-info').TrackInfo
+      }
+    }
+  }
+}

package/app/missing-types.d.ts

@@ -0,0 +1,21 @@
+/* eslint-disable */
+// https://www.npmjs.com/package/pub-sub-es
+declare module 'pub-sub-es' {
+  type EventMap = { [name: string]: any };
+  export type Subscription = {
+    event: string;
+    handler: (news: any) => void;
+  }
+  type PublishOptions = {
+    async?: boolean;
+    isNoGlobalBroadCast?: boolean;
+  }
+  export type PubSub = {
+    publish(event: string, news?: any, options?: PublishOptions): void;
+    subscribe(event: string, handler: (news: any) => void): Subscription;
+    unsubscribe(subscription: Subscription): void;
+    clear(): void;
+  }
+  export function createPubSub(): PubSub;
+  export const globalPubSub: PubSub;
+}

package/app/scripts/CenterTrack.jsx

@@ -1,4 +1,3 @@
-// @ts-check
 import PropTypes from 'prop-types';
 import React from 'react';
 import { brush, brushX, brushY } from 'd3-brush';

package/app/scripts/DraggableDiv.jsx

@@ -1,4 +1,3 @@
-// @ts-check
 import { drag } from 'd3-drag';
 import { pointer, select } from 'd3-selection';
 import PropTypes from 'prop-types';

package/app/scripts/GenomePositionSearchBox.jsx

@@ -1,4 +1,3 @@
-// @ts-check
 import { select } from 'd3-selection';
 import React from 'react';
 import slugid from 'slugid';

package/app/scripts/SearchField.js

@@ -1,6 +1,6 @@
 import { bisector } from 'd3-array';
 import { format } from 'd3-format';
-import { absToChr } from './utils';
+import absToChr from './utils/abs-to-chr';
 
 class SearchField {
   constructor(chromInfo) {