helixlife-expert-cli 0.1.0

package/cli/dist/modules/fund/nsfc/commands/research-path-confirm.js

@@ -0,0 +1,176 @@
+// Step2 路径3：确认缺失信息 → 直接跑提纲（2B，跳过补假说）
+import { readFile } from "node:fs/promises";
+import { helixlifeError, helixlifeErrorCode, printOutput, createFormatLogger, resolveUserPath, } from "../../../../core/index.js";
+import { wrapWorkbenchResult } from "../../../shared/result-wrapper.js";
+import { buildNsfcExecuteBody, createNsfcOrder, extractNsfcOrderId, } from "../apps.js";
+import { NSFC_APP_NAMES, NSFC_EXECUTE_API_PATH, NSFC_OUTLINE_APP_ID, NSFC_PROVINCE_PROGRAM, } from "../constants.js";
+import { getResearchPathReportText } from "../parse-hypothesis.js";
+import { promptMissingInfoPicks } from "../prompt-step2.js";
+import { loadNsfcSessionCache, saveNsfcSessionCache, } from "../session-cache.js";
+import { formatElapsedHint, streamNsfcWorkflow } from "../sse-utils.js";
+async function loadPicksFile(path) {
+    const filePath = resolveUserPath(path);
+    try {
+        const raw = await readFile(filePath, "utf8");
+        const parsed = JSON.parse(raw);
+        if (!Array.isArray(parsed)) {
+            throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "--picks-file 须为 JSON 数组 [{title,value}]");
+        }
+        return parsed.map((item, i) => {
+            if (!item || typeof item !== "object") {
+                throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, `--picks-file 第 ${i + 1} 项非法`);
+            }
+            const rec = item;
+            return {
+                title: String(rec.title ?? ""),
+                value: String(rec.value ?? ""),
+            };
+        });
+    }
+    catch (error) {
+        if (error instanceof helixlifeError)
+            throw error;
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, `无法读取 --picks-file: ${path}`);
+    }
+}
+function buildMissingInputs(picks) {
+    const out = {};
+    let seq = 0;
+    for (const item of picks) {
+        if (!item.title && !item.value)
+            continue;
+        seq += 1;
+        out[`q${seq}`] = item.title;
+        out[`text${seq}`] = item.value;
+    }
+    return out;
+}
+export async function runNsfcResearchPathConfirm(options) {
+    const format = options.format ?? "markdown";
+    const log = createFormatLogger(format);
+    if (!options.orderId?.trim()) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "research-path confirm 必须提供 --order-id");
+    }
+    const session = await loadNsfcSessionCache(options.orderId);
+    if (!session) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, `会话缓存缺失：orderId=${options.orderId}，请重新执行 hypothesis analyze`);
+    }
+    if (session.nextSubStep !== "research_path") {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, `当前路径为 ${session.nextSubStep}，请使用 hypothesis pick`);
+    }
+    const missingInfo = session.missingInfo ?? [];
+    const missingInfoEmpty = missingInfo.length === 0;
+    let picks = [];
+    if (!missingInfoEmpty) {
+        if (options.picksFile?.trim()) {
+            picks = await loadPicksFile(options.picksFile);
+        }
+        else if (options.yes) {
+            throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "存在缺失信息时，使用 -y 须提供 --picks-file（至少选一项工作流选项）");
+        }
+        else {
+            const prompted = await promptMissingInfoPicks(missingInfo);
+            picks = prompted.picks;
+        }
+        if (picks.length === 0) {
+            throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "请至少选择一项缺失信息后再继续");
+        }
+    }
+    const projectLevel = String(session.inputs.projectLevel ?? "");
+    const isProvince = projectLevel === "省部级";
+    const baseHypothesisText = String(session.inputs.text ?? session.query ?? "").trim();
+    if (!baseHypothesisText) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "缺少已有科学假说文本，无法生成提纲");
+    }
+    const rawResults = session.genePreResultsText ||
+        String(session.inputs.results ??
+            (Array.isArray(session.inputs.file1)
+                ? session.inputs.file1[0]?.content
+                : "") ??
+            "");
+    const content1 = getResearchPathReportText(session.researchPathResult) ||
+        session.researchPathText ||
+        "";
+    const program = isProvince
+        ? NSFC_PROVINCE_PROGRAM
+        : String(session.inputs.program ?? session.inputs.project ?? "");
+    const missingInputs = buildMissingInputs(picks);
+    // 2B：跳过补假说；query 填用户假说；inputs 对齐 buildNsfcV2OutlineWorkflowParams
+    const outlineQuery = baseHypothesisText;
+    const outlineInputs = {
+        program,
+        text: baseHypothesisText,
+        results: String(session.genePreResultsText?.trim() || rawResults || ""),
+        // 保留研究路径上下文供缓存 / Step3；execute 侧按前端 slim 只传 program/text/results
+        content1,
+        hypo: baseHypothesisText,
+        gene_pre_results_text: session.genePreResultsText ?? "",
+        projectLevel,
+        ...missingInputs,
+    };
+    const slimInputs = {
+        program: outlineInputs.program,
+        text: outlineInputs.text,
+        results: outlineInputs.results,
+    };
+    log("接口正在处理中，请耐心等待...");
+    const childOrder = await createNsfcOrder({
+        index: 1,
+        count: 1,
+        query: outlineQuery,
+        inputs: slimInputs,
+        parent_order_id: session.orderId,
+    });
+    const childOrderId = extractNsfcOrderId(childOrder);
+    const body = buildNsfcExecuteBody({
+        query: outlineQuery,
+        inputs: slimInputs,
+        appId: NSFC_OUTLINE_APP_ID,
+        appName: NSFC_APP_NAMES.outline,
+        orderId: childOrderId,
+        index: 1,
+        parentOrderId: session.orderId,
+        end: false,
+    });
+    const stream = await streamNsfcWorkflow({
+        path: NSFC_EXECUTE_API_PATH,
+        body,
+        format,
+        startLabel: "申请书提纲生成中…",
+        progressLabel: "提纲生成进行中",
+        finishLabel: "提纲生成完成",
+        failureMessage: "提纲生成失败，请稍后重试",
+        emptyMessage: "提纲生成结果为空",
+    });
+    const outline = stream.text.trim();
+    if (!outline) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_RESPONSE, "提纲生成结果为空");
+    }
+    await saveNsfcSessionCache({
+        ...session,
+        outlineParams: { query: outlineQuery, inputs: outlineInputs },
+        outline,
+        confirmedHypothesis: baseHypothesisText,
+        workflowRunId: stream.workflowRunId,
+    });
+    const result = {
+        outline,
+        researchPath: content1,
+        picks,
+        ready: true,
+    };
+    if (format === "json") {
+        printOutput(wrapWorkbenchResult(result, { step: "research-path-confirm", subType: "nsfc" }, {
+            orderId: session.orderId,
+            workflowRunId: stream.workflowRunId,
+            hasHypothesis: "existing",
+            nextSubStep: "research_path",
+            outlineAppSuffix: "",
+            readyForOutline: true,
+        }), "json");
+        return;
+    }
+    console.log(`\n## 申请书提纲${formatElapsedHint(stream.elapsedTime)}\n`);
+    console.log(outline);
+}
+//# sourceMappingURL=research-path-confirm.js.map

package/cli/dist/modules/fund/nsfc/commands/research-path-confirm.js.map

@@ -0,0 +1 @@
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package/cli/dist/modules/fund/nsfc/commands/tech-roadmap.d.ts

@@ -0,0 +1,9 @@
+import { type OutputFormat } from "../../../../core/index.js";
+export interface TechRoadmapOptions {
+    orderId?: string;
+    output?: string;
+    yes?: boolean;
+    format?: OutputFormat;
+}
+export declare function runNsfcTechRoadmap(options: TechRoadmapOptions): Promise<void>;
+//# sourceMappingURL=tech-roadmap.d.ts.map

package/cli/dist/modules/fund/nsfc/commands/tech-roadmap.d.ts.map

@@ -0,0 +1 @@
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package/cli/dist/modules/fund/nsfc/commands/tech-roadmap.js

@@ -0,0 +1,190 @@
+// 技术路线图：基于 Step3 提纲立项依据，只出图不插入全文
+import { mkdir, readFile, rename, writeFile } from "node:fs/promises";
+import { join } from "node:path";
+import { helixlifeError, helixlifeErrorCode, getUserDownloadsDir, printOutput, createFormatLogger, resolveUserPath, sanitizeFilename, } from "../../../../core/index.js";
+import { wrapWorkbenchResult } from "../../../shared/result-wrapper.js";
+import { buildNsfcExecuteBody, createNsfcOrder, extractNsfcOrderId, } from "../apps.js";
+import { NSFC_APP_NAMES, NSFC_EXECUTE_API_PATH, NSFC_TECH_ROADMAP_APP_ID, } from "../constants.js";
+import { renderMermaidToPng, stripMermaidFences } from "../mermaid-render.js";
+import { extractOutlineBlocks } from "../parse-outline.js";
+import { applyPngWatermark } from "../png-watermark.js";
+import { loadNsfcSessionCache } from "../session-cache.js";
+import { streamNsfcWorkflow } from "../sse-utils.js";
+/** 主三段（对齐原站 nsfc-v2 Tab）；anicln_level 仅顺带 */
+const PRIMARY_MERMAID_KEYS = [
+    "cell_level",
+    "animal_level",
+    "clinical_level",
+];
+const MERMAID_KEYS = [...PRIMARY_MERMAID_KEYS, "anicln_level"];
+const LEVEL_LABELS = {
+    cell_level: "细胞实验",
+    animal_level: "动物实验",
+    clinical_level: "临床实验",
+    anicln_level: "动临联合",
+};
+export async function runNsfcTechRoadmap(options) {
+    const format = options.format ?? "markdown";
+    const log = createFormatLogger(format);
+    if (!options.orderId?.trim()) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "tech-roadmap create 必须提供 --order-id");
+    }
+    const session = await loadNsfcSessionCache(options.orderId);
+    if (!session) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, `会话缓存缺失：orderId=${options.orderId}`);
+    }
+    const outline = String(session.outline ?? "").trim();
+    if (!outline) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_ARGUMENT, "缺少确认提纲（Step3），无法基于立项依据生成技术路线图");
+    }
+    const blocks = extractOutlineBlocks(outline);
+    const pp = (blocks.pp_outline || outline).trim();
+    const rp = (blocks.res_content || "").trim();
+    log("接口正在处理中，请耐心等待...");
+    const childOrder = await createNsfcOrder({
+        index: 3,
+        count: 1,
+        query: "技术路线图",
+        inputs: { pp, rp },
+        parent_order_id: session.orderId,
+    });
+    const childOrderId = extractNsfcOrderId(childOrder);
+    const body = buildNsfcExecuteBody({
+        query: "技术路线图",
+        inputs: { pp, rp },
+        appId: NSFC_TECH_ROADMAP_APP_ID,
+        appName: NSFC_APP_NAMES.techRoadmap,
+        orderId: childOrderId,
+        index: 3,
+        parentOrderId: session.orderId,
+        end: false,
+    });
+    const stream = await streamNsfcWorkflow({
+        path: NSFC_EXECUTE_API_PATH,
+        body,
+        format,
+        startLabel: "技术路线图生成中…",
+        progressLabel: "技术路线图进行中",
+        finishLabel: "技术路线图完成",
+        failureMessage: "技术路线图生成失败",
+        emptyMessage: "技术路线图未返回有效结果",
+        allowEmptyText: true,
+    });
+    const outputs = stream.outputs ?? {};
+    const outDir = options.output
+        ? resolveUserPath(options.output)
+        : join(getUserDownloadsDir(), "nsfc-tech-roadmap");
+    await mkdir(outDir, { recursive: true });
+    const mermaid = {};
+    const images = [];
+    const warnings = [];
+    const produceId = stream.workflowRunId ?? "";
+    for (const key of MERMAID_KEYS) {
+        const raw = outputs[key];
+        if (typeof raw !== "string" || !raw.trim())
+            continue;
+        mermaid[key] = stripMermaidFences(raw);
+        const label = LEVEL_LABELS[key];
+        // 先用 ASCII 路径渲染，再改名中文交付
+        const renderBase = join(outDir, `nsfc-tech-roadmap-${key}`);
+        const displayBase = join(outDir, sanitizeFilename(`技术路线图-${label}`));
+        // 对齐原站：细胞水平纵排，动物/临床/动临横排
+        const horizontal = key !== "cell_level";
+        const rendered = await renderMermaidToPng(raw, renderBase, { horizontal });
+        let mmdPath = rendered.mmdPath;
+        let pngPath = rendered.pngPath;
+        let watermarked = false;
+        if (rendered.rendered && rendered.pngPath) {
+            try {
+                const pngBuf = await readFile(rendered.pngPath);
+                const wm = await applyPngWatermark({
+                    pngBuffer: pngBuf,
+                    produceId,
+                    paddingColor: "#ffffff",
+                });
+                await writeFile(rendered.pngPath, wm.buffer);
+                watermarked = wm.watermarked;
+                if (!wm.watermarked && wm.error) {
+                    warnings.push(`${label} 水印失败（已保留原图）：${wm.error}`);
+                }
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                warnings.push(`${label} 水印处理异常（已保留原图）：${msg.slice(0, 200)}`);
+            }
+        }
+        else if (rendered.error) {
+            warnings.push(rendered.error);
+        }
+        // 渲染完成后再改成中文文件名（.mmd 始终改名；PNG 仅在成功时）
+        const displayMmd = `${displayBase}.mmd`;
+        const displayPng = `${displayBase}.png`;
+        try {
+            if (mmdPath !== displayMmd) {
+                await rename(mmdPath, displayMmd);
+                mmdPath = displayMmd;
+            }
+            if (pngPath && pngPath !== displayPng) {
+                await rename(pngPath, displayPng);
+                pngPath = displayPng;
+            }
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            warnings.push(`${label} 文件改名失败（仍可用 ASCII 路径）：${msg.slice(0, 200)}`);
+        }
+        images.push({
+            key,
+            label,
+            mmdPath,
+            pngPath,
+            rendered: Boolean(rendered.rendered && pngPath),
+            watermarked,
+        });
+    }
+    if (!images.length) {
+        throw new helixlifeError(helixlifeErrorCode.INVALID_RESPONSE, "技术路线图未返回 Mermaid 字段（cell_level / animal_level / clinical_level）");
+    }
+    const primaryReturned = PRIMARY_MERMAID_KEYS.filter((k) => mermaid[k]);
+    const primaryRendered = images.filter((img) => PRIMARY_MERMAID_KEYS.includes(img.key) &&
+        img.rendered);
+    if (primaryReturned.length >= 3 &&
+        primaryRendered.length < primaryReturned.length) {
+        const failed = images
+            .filter((img) => PRIMARY_MERMAID_KEYS.includes(img.key) &&
+            !img.rendered)
+            .map((img) => img.label);
+        warnings.push(`主三段中有 ${failed.length} 张 PNG 未渲染成功（${failed.join("、")}），` +
+            `graph-layout 出图失败；对应 .mmd 已保存。` +
+            `Agent 须向用户同时交付全部三段路径（含失败项的 .mmd）。`);
+    }
+    const result = {
+        images,
+        mermaid,
+        warnings,
+        note: "须交付细胞/动物/临床实验三张路径（PNG 优先；失败则对应 .mmd）。图片未插入全文。PNG 含水印「AI生成」（与原站一致）。",
+        ready: true,
+    };
+    if (format === "json") {
+        printOutput(wrapWorkbenchResult(result, { step: "tech-roadmap", subType: "nsfc" }, {
+            orderId: session.orderId,
+            workflowRunId: stream.workflowRunId,
+        }), "json");
+        return;
+    }
+    console.log("## 技术路线图已生成（未插入全文）\n");
+    for (const img of images) {
+        const path = img.pngPath ?? img.mmdPath;
+        const status = img.rendered
+            ? img.watermarked
+                ? "PNG+水印"
+                : "PNG"
+            : "仅.mmd";
+        console.log(`- ${img.label} (${img.key}) [${status}]: ${path}`);
+    }
+    if (warnings.length) {
+        console.log("\n警告:");
+        warnings.forEach((w) => console.log(`- ${w}`));
+    }
+}
+//# sourceMappingURL=tech-roadmap.js.map

package/cli/dist/modules/fund/nsfc/commands/tech-roadmap.js.map

@@ -0,0 +1 @@
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package/cli/dist/modules/fund/nsfc/constants.d.ts

@@ -0,0 +1,96 @@
+/** 后台模块类型（API 路径用 nsfc-v2；CLI 命名空间仍为 nsfc） */
+export declare const NSFC_MODULE_TYPE: "nsfc-v2";
+/** 上传接口 source，对齐前端 FileUploadItem */
+export declare const NSFC_UPLOAD_SOURCE = "helixlife5-newidea-completion";
+export declare const NSFC_UPLOAD_EXT: readonly [".pdf", ".docx"];
+export declare const NSFC_UPLOAD_MAX_MB = 30;
+/** 是否有科学假说 */
+export type NsfcHasHypothesis = "blank" | "existing";
+export declare const NSFC_HAS_HYPOTHESIS_OPTIONS: readonly [{
+    readonly value: "blank";
+    readonly label: "我没有科学假说，请帮我生成";
+}, {
+    readonly value: "existing";
+    readonly label: "我已有科学假说，立即填写";
+}];
+export type NsfcProjectLevel = "国家级" | "省部级";
+export declare const NSFC_PROJECT_LEVEL_OPTIONS: readonly NsfcProjectLevel[];
+export type NsfcProjectType = "面上项目" | "地区项目" | "青年项目";
+export declare const NSFC_PROJECT_TYPE_OPTIONS: readonly NsfcProjectType[];
+/** blank 路径：是否有前期研究结果 */
+export type NsfcPriorResult = "yes" | "no";
+export declare const NSFC_PRIOR_RESULT_LABEL: {
+    readonly yes: "我有前期研究结果";
+    readonly no: "我没有前期研究结果";
+};
+export declare const NSFC_PRIOR_RESULT_OPTIONS: readonly [{
+    readonly value: "yes";
+    readonly label: "我有前期研究结果";
+}, {
+    readonly value: "no";
+    readonly label: "我没有前期研究结果";
+}];
+/** Step2 子路径（供 Agent 串联，不对用户展示内部名） */
+export type NsfcNextSubStep = "background_genes" | "hypothesis_pick" | "research_path";
+export declare const NSFC_QUERY_MAX_BLANK_DISEASE = 50;
+export declare const NSFC_QUERY_MAX_BLANK_THEME = 500;
+export declare const NSFC_QUERY_MAX_EXISTING_HYPOTHESIS = 500;
+export declare const NSFC_DISEASE_MAX = 50;
+export declare function parseNsfcHasHypothesis(raw: string): NsfcHasHypothesis;
+export declare function parseNsfcProjectLevel(raw: string): NsfcProjectLevel;
+export declare function parseNsfcProjectType(raw: string): NsfcProjectType;
+export declare function parseNsfcPriorResult(raw: string): NsfcPriorResult;
+export declare function resolveNextSubStep(hasHypothesis: NsfcHasHypothesis, priorResult?: NsfcPriorResult): NsfcNextSubStep;
+export declare function resolveOutlineAppSuffix(hasHypothesis: NsfcHasHypothesis): "-none-hypothesis" | "";
+/** API 路径 */
+export declare const NSFC_ORDER_API_PATH: "agent/v1/ai/workbench/nsfc-v2/apps/orders";
+export declare const NSFC_EXECUTE_API_PATH: "agent/v1/ai/workbench/nsfc-v2/apps/execute";
+/** generate_hypothesis app_ids（对齐 site-nsfc-v2.ts） */
+export declare const NSFC_HYPOTHESIS_APP_IDS: {
+    /** blank + 无前期 · 国家级 */
+    readonly pickNoPriorNational: "d740eeb3-8343-4b2a-be00-020948b8d849";
+    /** unused in Step2 */
+    readonly unused1: "b4120724-d46e-4e70-a996-012b4e985e86";
+    /** 文章/附件分析 */
+    readonly articleAnalysis: "2d88d9c7-74ac-44d0-beae-1cafc9d3b264";
+    /** research_path · 国家级 */
+    readonly researchPathNational: "27f6af3f-606c-4041-b535-d550adabb0b0";
+    /** blank + 有前期假说 · 国家级 */
+    readonly pickFromGeneNational: "c0582318-ae12-449e-a64f-4b3519776d0c";
+    /** research_path 补假说（Step2 按 2B 跳过） */
+    readonly ensureHypBeforeOutline: "09e78eac-7126-4fce-814c-61b4d9d5d7f6";
+    /** blank + 有前期假说 · 省部级 */
+    readonly pickFromGeneProvince: "426aabbc-ed34-4058-b8ff-0cd50f82cdec";
+    /** blank + 无前期 · 省部级 */
+    readonly pickNoPriorProvince: "6de35546-e610-4c77-8c91-ec4fb554019d";
+    /** research_path · 省部级 */
+    readonly researchPathProvince: "e54f10e9-e41c-4aec-97d5-00d13a7029b7";
+    /** research_path 补假说省部级+text1（跳过） */
+    readonly ensureHypProvinceWithText1: "0cb5678d-76f1-42e6-8d5b-bff583adc372";
+};
+/** 提纲（outline / outline-none-hypothesis 同 UUID） */
+export declare const NSFC_OUTLINE_APP_ID = "a6e15414-a420-4ad4-9a01-264c0169ace0";
+/** 全文 */
+export declare const NSFC_ARTICLE_APP_ID = "c8c98d57-a273-49a7-b81f-ebade42b08e7";
+/** Writing 侧工具 */
+export declare const NSFC_TECH_ROADMAP_APP_ID = "a675b48a-1685-4f0e-84cc-8e4bec8d91dd";
+export declare const NSFC_HYPOTHESIS_FIGURE_APP_ID = "51ce7631-8c81-4817-88c2-113002257e8a";
+export declare const NSFC_FORMAT_CONVERT_APP_ID = "62d9ecb0-35d4-4c51-94bb-4bba0e5a6541";
+export declare const NSFC_CONTENT_PRODUCER = "helixlife";
+export declare const NSFC_HYPOTHESIS_FIGURE_STYLE = "\u7B80\u7EA6\u56FE\u89E3\u98CE\uFF08\u7528\u56FE\u5F62\u5143\u7D20\u548C\u6E05\u6670\u7684\u7BAD\u5934\u4F20\u8FBE\u673A\u5236\u903B\u8F91\u548C\u56E0\u679C\u5173\u7CFB\uFF09";
+export declare const NSFC_APP_NAMES: {
+    readonly generateHypothesis: "生成假说";
+    readonly outline: "已有假说提纲";
+    readonly outlineNoneHypothesis: "无假说提纲";
+    readonly article: "全文";
+    readonly techRoadmap: "技术路线图";
+    readonly hypothesisFigure: "假说机制图";
+    readonly formatConversion: "格式转换";
+};
+export declare const NSFC_PROVINCE_PROGRAM = "\u7701\u5E02\u7EA7\u522B\u9879\u76EE";
+export declare function isNsfcProvince(projectLevel?: string): boolean;
+export declare function resolvePickNoPriorAppId(projectLevel?: string): string;
+export declare function resolvePickFromGeneAppId(projectLevel?: string): string;
+export declare function resolveResearchPathAppId(projectLevel?: string): string;
+export declare function parseNsfcNextSubStep(raw: string): NsfcNextSubStep;
+//# sourceMappingURL=constants.d.ts.map

package/cli/dist/modules/fund/nsfc/constants.d.ts.map

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