grnsight 6.0.4 → 6.0.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1197) hide show
  1. package/database/README.md +40 -16
  2. package/database/expression-database/README.md +2 -2
  3. package/database/expression-database/schema.sql +14 -14
  4. package/database/expression-database/scripts/loader.py +6 -6
  5. package/database/network-database/README.md +36 -4
  6. package/database/network-database/schema.sql +7 -7
  7. package/database/network-database/scripts/filter_genes.py +1 -1
  8. package/database/network-database/scripts/generate_network.py +1 -1
  9. package/database/network-database/scripts/generate_new_network_version.py +223 -0
  10. package/database/network-database/scripts/loader.py +3 -3
  11. package/database/network-database/scripts/loader_updates.py +99 -0
  12. package/package.json +2 -2
  13. package/server/controllers/custom-workbook-controller.js +4 -3
  14. package/server/dals/expression-dal.js +8 -7
  15. package/server/dals/network-dal.js +3 -3
  16. package/web-client/public/js/api/grnsight-api.js +56 -55
  17. package/web-client/public/js/generateNetwork.js +15 -7
  18. package/web-client/public/js/setup-load-and-import-handlers.js +171 -170
  19. package/web-client/public/js/upload.js +74 -95
  20. package/.bundle/config +0 -3
  21. package/GRNsight - Beta.html +0 -194
  22. package/Gemfile.lock +0 -259
  23. package/_gh_pages/about.html +0 -807
  24. package/_gh_pages/assets/css/bootstrap.min.css +0 -10
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- <p id="title"><a href="/GRNsight">GRNsight</a></p>
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- <p id="subtext">Web app and service for visualizing models of gene regulatory networks.</p>
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- The remote/online GRNsight team at one of our weekly meetings
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- src="/GRNsight/assets/images/Choe-Shin_CMSI402-poster-session_20180430.jpg"
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- <p id="pageTitle">People</p>
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- <section>
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- <h2>Principal Investigators</h2>
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- <p class="name">Kam D. Dahlquist, Ph.D.</p>
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- <a href="http://kdahlquist.github.io/DahlquistLab/" target="_blank">http://kdahlquist.github.io/DahlquistLab/</a> <br>
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- Department of Biology</p><br>
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- <p class="name">John David N. Dionisio, Ph.D.</p>
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- <a href="http://dondi.lmu.build/" target="_blank">http://dondi.lmu.build/</a> <br>
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- Department of Computer Science</p> <br>
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- <p class="name">Ben G. Fitzpatrick, Ph.D.</p>
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- Department of Mathematics
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- <h2>Manager of Laboratory Facilities</h2>
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- <p class="name">Masao Kitamura</p>
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- <p class="personInfo">Department of Computer Science</p>
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- <h2>Research Assistants</h2>
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- <p class="name">Current Students</p>
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- <p class="studentName">Ona O. Igbinedion (LMU Computer Science '22) Spring 2020 - Present</p>
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- <p class="studentName">Ian M. Green (LMU Computer Science '22) Fall 2020 - Present</p>
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- <p class="studentName">Lauren L. Amparo (LMU Biology '24) Fall 2020 - Present</p>
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- <p class="name">Former Students</p>
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- <p class="studentName">Alexia M. Filler (LMU Computer Science '20) Spring 2019 - Spring 2020</p>
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- <p class="studentName">Kevin B. Patterson (LMU Computer Science '20) Spring 2020 - Spring 2020</p>
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- <p class="studentName">Mihir Samdarshi (LMU Biology '19) Fall 2015 - Fall 2019</p>
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- <p class="studentName">John L. Lopez (LMU Computer Science '20) Spring 2018 - Spring 2019</p>
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- <p class="studentName">Justin Kyle T. Torres (LMU Computer Science '19) Fall 2018</p>
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- <p class="studentName">Eileen J. Choe (LMU Computer Science '18) Spring 2017 - Spring 2018</p>
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- <p class="studentName">Yeon-Soo (Jen) Shin (LMU Computer Science '19), Fall 2016 - Spring 2018</p>
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- <p class="studentName">Edward B. Bachoura (LMU Computer Science '19) Spring 2017 - Fall 2017</p>
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- <p class="studentName">Nicole A. Anguiano (LMU Computer Science '16), Spring 2014 - Spring 2017</p>
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- <p class="studentName">Anindita Varshneya (LMU Biology '17), Fall 2014 - Spring 2017</p>
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- <p class="studentName">Katrina Sherbina (LMU Biomathematics, '14), Spring 2014</p>
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- <p class="studentName">Britain J. Southwick (LMU Computer Science '14), Spring 2014</p>
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