genoma-evolution 1.0.0

package/.claude/worktrees/phase-2-mcp/install.sh

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+#!/usr/bin/env bash
+# ═══════════════════════════════════════════════════════════════════
+# Hermes Dashboard — Universal Installer
+# Works on Linux (x86_64/aarch64) and macOS (Intel/Apple Silicon)
+# ═══════════════════════════════════════════════════════════════════
+set -euo pipefail
+
+DASHBOARD_DIR="$(cd "$(dirname "$0")" && pwd)"
+BACKEND_DIR="$DASHBOARD_DIR/backend"
+PYTHON=""
+
+# ── Colors ──────────────────────────────────────────────────────────
+RED='\033[0;31m'; GREEN='\033[0;32m'; YELLOW='\033[1;33m'
+CYAN='\033[0;36m'; BOLD='\033[1m'; NC='\033[0m'
+
+info()  { echo -e "${CYAN}▸${NC} $*"; }
+ok()    { echo -e "${GREEN}✓${NC} $*"; }
+warn()  { echo -e "${YELLOW}⚠${NC} $*"; }
+err()   { echo -e "${RED}✗${NC} $*" >&2; }
+banner(){ echo -e "\n${BOLD}${CYAN}$*${NC}\n"; }
+
+# ── Detect OS ───────────────────────────────────────────────────────
+detect_os() {
+    case "$(uname -s)" in
+        Linux*)  OS="linux";;
+        Darwin*) OS="macos";;
+        *)       err "Unsupported OS: $(uname -s)"; exit 1;;
+    esac
+    ARCH="$(uname -m)"
+    ok "Detected: $OS ($ARCH)"
+}
+
+# ── Find Python ─────────────────────────────────────────────────────
+find_python() {
+    for candidate in python3.12 python3.11 python3; do
+        if command -v "$candidate" &>/dev/null; then
+            local ver
+            ver=$("$candidate" -c "import sys; print(f'{sys.version_info.major}.{sys.version_info.minor}')" 2>/dev/null || echo "0.0")
+            local major=${ver%%.*}
+            local minor=${ver#*.}
+            if [[ "$major" -ge 3 && "$minor" -ge 10 ]]; then
+                PYTHON="$candidate"
+                ok "Python: $PYTHON ($ver)"
+                return 0
+            fi
+        fi
+    done
+    err "Python 3.10+ not found. Install it first."
+    exit 1
+}
+
+# ── Find hermes-agent ───────────────────────────────────────────────
+find_hermes() {
+    local candidates=(
+        "${HERMES_AGENT_REPO:-}"
+        "$HOME/.hermes/hermes-agent"
+        "$HOME/.local/share/hermes/hermes-agent"
+        "/usr/local/share/hermes/hermes-agent"
+        "$DASHBOARD_DIR/../hermes-agent"
+    )
+    for p in "${candidates[@]}"; do
+        [[ -z "$p" ]] && continue
+        if [[ -d "$p/skills" ]]; then
+            HERMES_REPO="$p"
+            ok "hermes-agent: $HERMES_REPO"
+            return 0
+        fi
+    done
+    err "hermes-agent not found. Set HERMES_AGENT_REPO or install to ~/.hermes/hermes-agent"
+    exit 1
+}
+
+# ── Find hermes-agent-self-evolution ────────────────────────────────
+find_evolution() {
+    local candidates=(
+        "$HOME/.hermes/hermes-agent-self-evolution"
+        "$DASHBOARD_DIR/../hermes-agent-self-evolution"
+        "$HOME/dev/hermes-agent-self-evolution"
+    )
+    for p in "${candidates[@]}"; do
+        if [[ -d "$p/evolution" ]]; then
+            EVOLUTION_DIR="$p"
+            ok "self-evolution: $EVOLUTION_DIR"
+            return 0
+        fi
+    done
+    warn "hermes-agent-self-evolution not found (evolution features will be limited)"
+    EVOLUTION_DIR=""
+}
+
+# ── Setup Python venv ───────────────────────────────────────────────
+setup_python_deps() {
+    banner "Setting up Python backend"
+
+    if [[ ! -d "$BACKEND_DIR/venv" ]]; then
+        info "Creating venv..."
+        "$PYTHON" -m venv "$BACKEND_DIR/venv"
+    fi
+
+    # Activate venv
+    source "$BACKEND_DIR/venv/bin/activate"
+
+    info "Installing Python deps..."
+    pip install -q --upgrade pip
+    pip install -q -r "$BACKEND_DIR/requirements.txt"
+
+    # Also install evolution deps if available
+    if [[ -n "$EVOLUTION_DIR" && -f "$EVOLUTION_DIR/pyproject.toml" ]]; then
+        info "Installing evolution deps..."
+        pip install -q dspy click rich pyyaml openai 2>/dev/null || warn "Some evolution deps failed (non-critical)"
+    fi
+
+    ok "Python deps installed"
+}
+
+# ── Setup Node deps ─────────────────────────────────────────────────
+setup_node_deps() {
+    banner "Setting up Node.js frontend"
+
+    if ! command -v node &>/dev/null; then
+        err "Node.js not found. Install from https://nodejs.org"
+        exit 1
+    fi
+
+    local node_ver
+    node_ver=$(node -v | tr -d 'v' | cut -d. -f1)
+    if [[ "$node_ver" -lt 18 ]]; then
+        err "Node.js 18+ required (found $(node -v))"
+        exit 1
+    fi
+    ok "Node.js: $(node -v)"
+
+    if [[ ! -d "$DASHBOARD_DIR/node_modules" ]]; then
+        info "Installing npm deps..."
+        cd "$DASHBOARD_DIR"
+        npm install --silent
+    fi
+    ok "Node deps installed"
+}
+
+# ── Generate .env ───────────────────────────────────────────────────
+generate_env() {
+    banner "Generating configuration"
+
+    local env_file="$DASHBOARD_DIR/.env.local"
+    cat > "$env_file" << EOF
+# Auto-generated by install.sh — $(date -u +%Y-%m-%dT%H:%M:%SZ)
+NEXT_PUBLIC_API_URL=http://localhost:8787
+HERMES_AGENT_REPO=$HERMES_REPO
+EVOLUTION_DIR=$EVOLUTION_DIR
+PYTHON=$(which "$PYTHON" 2>/dev/null || echo "$PYTHON")
+EOF
+    ok "Config: $env_file"
+}
+
+# ── Create start script ─────────────────────────────────────────────
+create_start_script() {
+    local start_script="$DASHBOARD_DIR/start.sh"
+    cat > "$start_script" << 'STARTEOF'
+#!/usr/bin/env bash
+# Hermes Dashboard — Start script
+set -euo pipefail
+DIR="$(cd "$(dirname "$0")" && pwd)"
+
+# Load env
+[[ -f "$DIR/.env.local" ]] && set -a && source "$DIR/.env.local" && set +a
+
+echo "╔══════════════════════════════════════════╗"
+echo "║  Hermes Evolution Dashboard              ║"
+echo "╚══════════════════════════════════════════╝"
+echo ""
+
+# Start backend
+echo "▸ Starting backend (port 8787)..."
+source "$DIR/backend/venv/bin/activate"
+export HERMES_AGENT_REPO="${HERMES_AGENT_REPO:-$HOME/.hermes/hermes-agent}"
+export PYTHONPATH="${EVOLUTION_DIR:-$HOME/.hermes/hermes-agent-self-evolution}"
+uvicorn backend.main:app --host 0.0.0.0 --port 8787 &
+BACKEND_PID=$!
+
+# Wait for backend
+for i in $(seq 1 15); do
+    curl -sf http://localhost:8787/api/health >/dev/null 2>&1 && break
+    sleep 0.5
+done
+echo "✓ Backend online (PID $BACKEND_PID)"
+
+# Start frontend
+echo "▸ Starting frontend (port 3001)..."
+PORT=3001 npm run dev --prefix "$DIR" &
+FRONTEND_PID=$!
+echo "✓ Frontend starting..."
+echo ""
+echo "  Dashboard: http://localhost:3001"
+echo "  API:       http://localhost:8787"
+echo ""
+echo "  Press Ctrl+C to stop"
+echo ""
+
+# Cleanup on exit
+cleanup() {
+    echo ""
+    echo "Stopping..."
+    kill $BACKEND_PID 2>/dev/null || true
+    kill $FRONTEND_PID 2>/dev/null || true
+    exit 0
+}
+trap cleanup INT TERM
+
+wait
+STARTEOF
+    chmod +x "$start_script"
+    ok "Start script: $start_script"
+}
+
+# ── Count skills (for verification) ─────────────────────────────────
+count_skills() {
+    if [[ -d "$HERMES_REPO/skills" ]]; then
+        local md_count desc_count total
+        md_count=$(find "$HERMES_REPO/skills" -name "SKILL.md" 2>/dev/null | wc -l | tr -d ' ')
+        desc_count=$(find "$HERMES_REPO/skills" -name "DESCRIPTION.md" 2>/dev/null | wc -l | tr -d ' ')
+        total=$((md_count + desc_count))
+        ok "Skills found: $total ($md_count SKILL.md + $desc_count DESCRIPTION.md)"
+    fi
+}
+
+# ═══════════════════════════════════════════════════════════════════
+# Main
+# ═══════════════════════════════════════════════════════════════════
+banner "Hermes Dashboard Installer"
+
+detect_os
+find_python
+find_hermes
+find_evolution
+count_skills
+setup_python_deps
+setup_node_deps
+generate_env
+create_start_script
+
+banner "Installation complete!"
+echo "  Start with:  ./start.sh"
+echo "  Dashboard:   http://localhost:3001"
+echo ""

package/.claude/worktrees/phase-2-mcp/next-env.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="next" />
+/// <reference types="next/image-types/global" />
+import "./.next/dev/types/routes.d.ts";
+
+// NOTE: This file should not be edited
+// see https://nextjs.org/docs/app/api-reference/config/typescript for more information.

package/.claude/worktrees/phase-2-mcp/next.config.ts

@@ -0,0 +1,32 @@
+import type { NextConfig } from "next";
+
+const nextConfig: NextConfig = {
+  // Standalone output — reduces node_modules in production
+  output: "standalone",
+
+
+  // Proxy API calls to FastAPI backend (:8000)
+  async rewrites() {
+    return [
+      {
+        source: "/api/:path*",
+        destination: "http://localhost:8000/api/:path*",
+      },
+    ];
+  },
+
+  // Bundle optimization: tree-shake unused deps
+  experimental: {
+    optimizePackageImports: [
+      "lucide-react",
+      "framer-motion",
+      "radix-ui",
+      "react-bits",
+    ],
+  },
+
+  // Keep source maps manageable
+  productionBrowserSourceMaps: false,
+};
+
+export default nextConfig;