docrev 0.9.18 → 0.10.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (134) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +173 -149
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +431 -406
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/build.d.ts +8 -0
  11. package/dist/lib/build.d.ts.map +1 -1
  12. package/dist/lib/build.js +62 -6
  13. package/dist/lib/build.js.map +1 -1
  14. package/dist/lib/commands/context.d.ts +1 -1
  15. package/dist/lib/commands/context.d.ts.map +1 -1
  16. package/dist/lib/commands/context.js +1 -1
  17. package/dist/lib/commands/context.js.map +1 -1
  18. package/dist/lib/commands/sections.js +7 -7
  19. package/dist/lib/commands/sections.js.map +1 -1
  20. package/dist/lib/commands/sync.d.ts.map +1 -1
  21. package/dist/lib/commands/sync.js +15 -14
  22. package/dist/lib/commands/sync.js.map +1 -1
  23. package/dist/lib/commands/utilities.js +164 -164
  24. package/dist/lib/commands/verify-anchors.js +6 -6
  25. package/dist/lib/commands/verify-anchors.js.map +1 -1
  26. package/dist/lib/commands/word-tools.js +8 -8
  27. package/dist/lib/grammar.js +3 -3
  28. package/dist/lib/macro-filter.lua +201 -0
  29. package/dist/lib/macros.d.ts +102 -0
  30. package/dist/lib/macros.d.ts.map +1 -0
  31. package/dist/lib/macros.js +218 -0
  32. package/dist/lib/macros.js.map +1 -0
  33. package/dist/lib/pdf-comments.js +44 -44
  34. package/dist/lib/plugins.js +57 -57
  35. package/dist/lib/pptx-color-filter.lua +37 -0
  36. package/dist/lib/pptx-themes.js +115 -115
  37. package/dist/lib/schema.d.ts.map +1 -1
  38. package/dist/lib/schema.js +34 -0
  39. package/dist/lib/schema.js.map +1 -1
  40. package/dist/lib/sections.d.ts +35 -0
  41. package/dist/lib/sections.d.ts.map +1 -1
  42. package/dist/lib/sections.js +81 -0
  43. package/dist/lib/sections.js.map +1 -1
  44. package/dist/lib/spelling.js +2 -2
  45. package/dist/lib/templates.js +387 -387
  46. package/dist/lib/themes.js +51 -51
  47. package/eslint.config.js +27 -27
  48. package/lib/anchor-match.ts +276 -276
  49. package/lib/annotations.ts +644 -644
  50. package/lib/build.ts +1766 -1694
  51. package/lib/citations.ts +160 -160
  52. package/lib/commands/build.ts +855 -855
  53. package/lib/commands/citations.ts +515 -515
  54. package/lib/commands/comments.ts +1050 -1050
  55. package/lib/commands/context.ts +176 -174
  56. package/lib/commands/core.ts +309 -309
  57. package/lib/commands/doi.ts +435 -435
  58. package/lib/commands/file-ops.ts +372 -372
  59. package/lib/commands/history.ts +320 -320
  60. package/lib/commands/index.ts +87 -87
  61. package/lib/commands/init.ts +259 -259
  62. package/lib/commands/merge-resolve.ts +378 -378
  63. package/lib/commands/preview.ts +178 -178
  64. package/lib/commands/project-info.ts +244 -244
  65. package/lib/commands/quality.ts +517 -517
  66. package/lib/commands/response.ts +454 -454
  67. package/lib/commands/section-boundaries.ts +82 -82
  68. package/lib/commands/sections.ts +451 -451
  69. package/lib/commands/sync.ts +709 -706
  70. package/lib/commands/text-ops.ts +449 -449
  71. package/lib/commands/utilities.ts +448 -448
  72. package/lib/commands/verify-anchors.ts +272 -272
  73. package/lib/commands/word-tools.ts +340 -340
  74. package/lib/comment-realign.ts +517 -517
  75. package/lib/config.ts +84 -84
  76. package/lib/crossref.ts +781 -781
  77. package/lib/csl.ts +191 -191
  78. package/lib/dependencies.ts +98 -98
  79. package/lib/diff-engine.ts +465 -465
  80. package/lib/doi-cache.ts +115 -115
  81. package/lib/doi.ts +897 -897
  82. package/lib/equations.ts +506 -506
  83. package/lib/errors.ts +346 -346
  84. package/lib/format.ts +541 -541
  85. package/lib/git.ts +326 -326
  86. package/lib/grammar.ts +303 -303
  87. package/lib/image-registry.ts +180 -180
  88. package/lib/import.ts +911 -911
  89. package/lib/journals.ts +543 -543
  90. package/lib/macro-filter.lua +201 -0
  91. package/lib/macros.ts +273 -0
  92. package/lib/merge.ts +633 -633
  93. package/lib/orcid.ts +144 -144
  94. package/lib/pdf-comments.ts +263 -263
  95. package/lib/pdf-import.ts +524 -524
  96. package/lib/plugins.ts +362 -362
  97. package/lib/postprocess.ts +188 -188
  98. package/lib/pptx-color-filter.lua +37 -37
  99. package/lib/pptx-template.ts +469 -469
  100. package/lib/pptx-themes.ts +483 -483
  101. package/lib/protect-restore.ts +520 -520
  102. package/lib/rate-limiter.ts +94 -94
  103. package/lib/response.ts +197 -197
  104. package/lib/restore-references.ts +240 -240
  105. package/lib/review.ts +327 -327
  106. package/lib/schema.ts +488 -454
  107. package/lib/scientific-words.ts +73 -73
  108. package/lib/sections.ts +425 -335
  109. package/lib/slides.ts +756 -756
  110. package/lib/spelling.ts +334 -334
  111. package/lib/templates.ts +526 -526
  112. package/lib/themes.ts +742 -742
  113. package/lib/trackchanges.ts +247 -247
  114. package/lib/tui.ts +450 -450
  115. package/lib/types.ts +550 -550
  116. package/lib/undo.ts +250 -250
  117. package/lib/utils.ts +69 -69
  118. package/lib/variables.ts +179 -179
  119. package/lib/word-extraction.ts +806 -806
  120. package/lib/word.ts +643 -643
  121. package/lib/wordcomments.ts +840 -840
  122. package/package.json +137 -137
  123. package/scripts/postbuild.js +47 -28
  124. package/skill/REFERENCE.md +539 -539
  125. package/skill/SKILL.md +295 -295
  126. package/tsconfig.json +26 -26
  127. package/types/index.d.ts +525 -525
  128. package/issues.md +0 -180
  129. package/site/assets/extra.css +0 -208
  130. package/site/commands.html +0 -926
  131. package/site/configuration.html +0 -469
  132. package/site/index.html +0 -288
  133. package/site/troubleshooting.html +0 -461
  134. package/site/workflow.html +0 -518
package/lib/plugins.ts CHANGED
@@ -1,362 +1,362 @@
1
- /**
2
- * Plugin system for custom journal profiles and export formats
3
- *
4
- * Users can add custom profiles in:
5
- * - Project: .rev/profiles/*.yaml
6
- * - User: ~/.rev/profiles/*.yaml
7
- */
8
-
9
- import * as fs from 'fs';
10
- import * as path from 'path';
11
- import * as os from 'os';
12
- import * as yaml from 'yaml';
13
-
14
- /**
15
- * Journal profile requirements
16
- */
17
- interface ProfileRequirements {
18
- wordLimit?: Record<string, number | null>;
19
- references?: Record<string, unknown>;
20
- figures?: Record<string, unknown>;
21
- sections?: Record<string, unknown>;
22
- authors?: Record<string, unknown>;
23
- keywords?: { min?: number; max?: number } | null;
24
- dataAvailability?: boolean;
25
- [key: string]: unknown;
26
- }
27
-
28
- /**
29
- * Journal profile
30
- */
31
- interface Profile {
32
- id?: string;
33
- name: string;
34
- url?: string | null;
35
- custom?: boolean;
36
- requirements?: ProfileRequirements;
37
- [key: string]: unknown;
38
- }
39
-
40
- /**
41
- * Journal formatting defaults
42
- */
43
- interface ProfileFormatting {
44
- csl?: string;
45
- pdf?: Record<string, unknown>;
46
- docx?: Record<string, unknown>;
47
- crossref?: Record<string, unknown>;
48
- [key: string]: unknown;
49
- }
50
-
51
- /**
52
- * Normalized profile
53
- */
54
- interface NormalizedProfile {
55
- name: string;
56
- url: string | null;
57
- custom: boolean;
58
- requirements: ProfileRequirements;
59
- formatting?: ProfileFormatting;
60
- }
61
-
62
- /**
63
- * Profile list entry
64
- */
65
- interface ProfileListEntry {
66
- id: string;
67
- name: string;
68
- source: 'user' | 'project';
69
- path: string;
70
- }
71
-
72
- /**
73
- * Plugin directories info
74
- */
75
- interface PluginDirsInfo {
76
- user: string;
77
- project: string;
78
- userExists: boolean;
79
- projectExists: boolean;
80
- }
81
-
82
- // Plugin directories
83
- const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
- const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
-
86
- /**
87
- * Load all custom journal profiles
88
- */
89
- export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
- const profiles: Record<string, NormalizedProfile> = {};
91
-
92
- // Load user profiles first (lower priority)
93
- const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
- Object.assign(profiles, userProfiles);
95
-
96
- // Load project profiles (higher priority, can override)
97
- const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
- Object.assign(profiles, projectProfiles);
99
-
100
- return profiles;
101
- }
102
-
103
- /**
104
- * Load profiles from a directory
105
- */
106
- function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
- const profiles: Record<string, NormalizedProfile> = {};
108
-
109
- if (!fs.existsSync(dir)) {
110
- return profiles;
111
- }
112
-
113
- try {
114
- const files = fs.readdirSync(dir).filter(f =>
115
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
- );
117
-
118
- for (const file of files) {
119
- try {
120
- const filePath = path.join(dir, file);
121
- const content = fs.readFileSync(filePath, 'utf-8');
122
- const profile = file.endsWith('.json')
123
- ? JSON.parse(content)
124
- : yaml.parse(content);
125
-
126
- if (validateProfile(profile)) {
127
- const id = profile.id || path.basename(file, path.extname(file));
128
- profiles[id] = normalizeProfile(profile);
129
- }
130
- } catch (err: unknown) {
131
- const message = err instanceof Error ? err.message : String(err);
132
- console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
- }
134
- }
135
- } catch {
136
- // Directory not readable
137
- }
138
-
139
- return profiles;
140
- }
141
-
142
- /**
143
- * Validate a profile structure
144
- */
145
- function validateProfile(profile: unknown): profile is Profile {
146
- if (!profile || typeof profile !== 'object') {
147
- return false;
148
- }
149
-
150
- const p = profile as Profile;
151
-
152
- // Must have a name
153
- if (!p.name || typeof p.name !== 'string') {
154
- return false;
155
- }
156
-
157
- // Requirements must be an object if present
158
- if (p.requirements && typeof p.requirements !== 'object') {
159
- return false;
160
- }
161
-
162
- return true;
163
- }
164
-
165
- /**
166
- * Normalize profile to standard structure
167
- */
168
- function normalizeProfile(profile: Profile): NormalizedProfile {
169
- const normalized: NormalizedProfile = {
170
- name: profile.name,
171
- url: profile.url || null,
172
- custom: true,
173
- requirements: {
174
- wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
- references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
- figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
- sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
- authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
- keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
- dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
- ...profile.requirements,
182
- },
183
- };
184
-
185
- // Pass through formatting if present
186
- const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
- if (formatting && typeof formatting === 'object') {
188
- normalized.formatting = formatting;
189
- }
190
-
191
- return normalized;
192
- }
193
-
194
- /**
195
- * Initialize plugin directories
196
- */
197
- export function initPluginDir(project = false): string {
198
- const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
-
200
- if (!fs.existsSync(dir)) {
201
- fs.mkdirSync(dir, { recursive: true });
202
- }
203
-
204
- return dir;
205
- }
206
-
207
- /**
208
- * Get plugin directories info
209
- */
210
- export function getPluginDirs(): PluginDirsInfo {
211
- return {
212
- user: USER_PLUGINS_DIR,
213
- project: PROJECT_PLUGINS_DIR,
214
- userExists: fs.existsSync(USER_PLUGINS_DIR),
215
- projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
- };
217
- }
218
-
219
- /**
220
- * Create a sample profile template
221
- */
222
- export function createProfileTemplate(journalName: string): string {
223
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
-
225
- return `# Custom journal profile for ${journalName}
226
- # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
- # Or: .rev/profiles/${id}.yaml (project-specific)
228
-
229
- id: ${id}
230
- name: "${journalName}"
231
- url: "https://journal-website.com/author-guidelines"
232
-
233
- # Word count limits
234
- wordLimit:
235
- main: 8000 # null for no limit
236
- abstract: 300
237
- title: null # characters
238
-
239
- # Reference requirements
240
- references:
241
- max: null # null for no limit
242
- doiRequired: true
243
-
244
- # Figure/table limits
245
- figures:
246
- max: 8
247
- combinedWithTables: false
248
-
249
- # Required sections
250
- sections:
251
- required:
252
- - Abstract
253
- - Introduction
254
- - Methods
255
- - Results
256
- - Discussion
257
- methodsPosition: null # 'end' or 'before-results'
258
-
259
- # Keywords
260
- keywords:
261
- min: 4
262
- max: 8
263
-
264
- # Other requirements
265
- dataAvailability: true
266
- highlights: false
267
- graphicalAbstract: false
268
-
269
- # Build formatting defaults (applied via rev build -j ${id})
270
- # formatting:
271
- # csl: "${id}" # CSL style name or path
272
- # pdf:
273
- # fontsize: 12pt
274
- # geometry: margin=1in
275
- # linestretch: 1.5
276
- # numbersections: false
277
- # docx:
278
- # reference: null # Path to reference .docx template
279
- # crossref:
280
- # figPrefix: [Fig., Figs.]
281
- # tblPrefix: [Table, Tables]
282
- `;
283
- }
284
-
285
- /**
286
- * Save a profile template
287
- */
288
- export function saveProfileTemplate(journalName: string, project = false): string {
289
- const dir = initPluginDir(project);
290
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
- const filePath = path.join(dir, `${id}.yaml`);
292
-
293
- if (fs.existsSync(filePath)) {
294
- throw new Error(`Profile already exists: ${filePath}`);
295
- }
296
-
297
- const content = createProfileTemplate(journalName);
298
- fs.writeFileSync(filePath, content, 'utf-8');
299
-
300
- return filePath;
301
- }
302
-
303
- /**
304
- * List all custom profiles
305
- */
306
- export function listCustomProfiles(): ProfileListEntry[] {
307
- const result: ProfileListEntry[] = [];
308
-
309
- // User profiles
310
- if (fs.existsSync(USER_PLUGINS_DIR)) {
311
- const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
- );
314
-
315
- for (const file of files) {
316
- try {
317
- const filePath = path.join(USER_PLUGINS_DIR, file);
318
- const content = fs.readFileSync(filePath, 'utf-8');
319
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
-
321
- if (validateProfile(profile)) {
322
- result.push({
323
- id: profile.id || path.basename(file, path.extname(file)),
324
- name: profile.name,
325
- source: 'user',
326
- path: filePath,
327
- });
328
- }
329
- } catch {
330
- // Skip invalid profiles
331
- }
332
- }
333
- }
334
-
335
- // Project profiles
336
- if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
- const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
- );
340
-
341
- for (const file of files) {
342
- try {
343
- const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
- const content = fs.readFileSync(filePath, 'utf-8');
345
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
-
347
- if (validateProfile(profile)) {
348
- result.push({
349
- id: profile.id || path.basename(file, path.extname(file)),
350
- name: profile.name,
351
- source: 'project',
352
- path: filePath,
353
- });
354
- }
355
- } catch {
356
- // Skip invalid profiles
357
- }
358
- }
359
- }
360
-
361
- return result;
362
- }
1
+ /**
2
+ * Plugin system for custom journal profiles and export formats
3
+ *
4
+ * Users can add custom profiles in:
5
+ * - Project: .rev/profiles/*.yaml
6
+ * - User: ~/.rev/profiles/*.yaml
7
+ */
8
+
9
+ import * as fs from 'fs';
10
+ import * as path from 'path';
11
+ import * as os from 'os';
12
+ import * as yaml from 'yaml';
13
+
14
+ /**
15
+ * Journal profile requirements
16
+ */
17
+ interface ProfileRequirements {
18
+ wordLimit?: Record<string, number | null>;
19
+ references?: Record<string, unknown>;
20
+ figures?: Record<string, unknown>;
21
+ sections?: Record<string, unknown>;
22
+ authors?: Record<string, unknown>;
23
+ keywords?: { min?: number; max?: number } | null;
24
+ dataAvailability?: boolean;
25
+ [key: string]: unknown;
26
+ }
27
+
28
+ /**
29
+ * Journal profile
30
+ */
31
+ interface Profile {
32
+ id?: string;
33
+ name: string;
34
+ url?: string | null;
35
+ custom?: boolean;
36
+ requirements?: ProfileRequirements;
37
+ [key: string]: unknown;
38
+ }
39
+
40
+ /**
41
+ * Journal formatting defaults
42
+ */
43
+ interface ProfileFormatting {
44
+ csl?: string;
45
+ pdf?: Record<string, unknown>;
46
+ docx?: Record<string, unknown>;
47
+ crossref?: Record<string, unknown>;
48
+ [key: string]: unknown;
49
+ }
50
+
51
+ /**
52
+ * Normalized profile
53
+ */
54
+ interface NormalizedProfile {
55
+ name: string;
56
+ url: string | null;
57
+ custom: boolean;
58
+ requirements: ProfileRequirements;
59
+ formatting?: ProfileFormatting;
60
+ }
61
+
62
+ /**
63
+ * Profile list entry
64
+ */
65
+ interface ProfileListEntry {
66
+ id: string;
67
+ name: string;
68
+ source: 'user' | 'project';
69
+ path: string;
70
+ }
71
+
72
+ /**
73
+ * Plugin directories info
74
+ */
75
+ interface PluginDirsInfo {
76
+ user: string;
77
+ project: string;
78
+ userExists: boolean;
79
+ projectExists: boolean;
80
+ }
81
+
82
+ // Plugin directories
83
+ const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
+ const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
+
86
+ /**
87
+ * Load all custom journal profiles
88
+ */
89
+ export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
+ const profiles: Record<string, NormalizedProfile> = {};
91
+
92
+ // Load user profiles first (lower priority)
93
+ const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
+ Object.assign(profiles, userProfiles);
95
+
96
+ // Load project profiles (higher priority, can override)
97
+ const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
+ Object.assign(profiles, projectProfiles);
99
+
100
+ return profiles;
101
+ }
102
+
103
+ /**
104
+ * Load profiles from a directory
105
+ */
106
+ function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
+ const profiles: Record<string, NormalizedProfile> = {};
108
+
109
+ if (!fs.existsSync(dir)) {
110
+ return profiles;
111
+ }
112
+
113
+ try {
114
+ const files = fs.readdirSync(dir).filter(f =>
115
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
+ );
117
+
118
+ for (const file of files) {
119
+ try {
120
+ const filePath = path.join(dir, file);
121
+ const content = fs.readFileSync(filePath, 'utf-8');
122
+ const profile = file.endsWith('.json')
123
+ ? JSON.parse(content)
124
+ : yaml.parse(content);
125
+
126
+ if (validateProfile(profile)) {
127
+ const id = profile.id || path.basename(file, path.extname(file));
128
+ profiles[id] = normalizeProfile(profile);
129
+ }
130
+ } catch (err: unknown) {
131
+ const message = err instanceof Error ? err.message : String(err);
132
+ console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
+ }
134
+ }
135
+ } catch {
136
+ // Directory not readable
137
+ }
138
+
139
+ return profiles;
140
+ }
141
+
142
+ /**
143
+ * Validate a profile structure
144
+ */
145
+ function validateProfile(profile: unknown): profile is Profile {
146
+ if (!profile || typeof profile !== 'object') {
147
+ return false;
148
+ }
149
+
150
+ const p = profile as Profile;
151
+
152
+ // Must have a name
153
+ if (!p.name || typeof p.name !== 'string') {
154
+ return false;
155
+ }
156
+
157
+ // Requirements must be an object if present
158
+ if (p.requirements && typeof p.requirements !== 'object') {
159
+ return false;
160
+ }
161
+
162
+ return true;
163
+ }
164
+
165
+ /**
166
+ * Normalize profile to standard structure
167
+ */
168
+ function normalizeProfile(profile: Profile): NormalizedProfile {
169
+ const normalized: NormalizedProfile = {
170
+ name: profile.name,
171
+ url: profile.url || null,
172
+ custom: true,
173
+ requirements: {
174
+ wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
+ references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
+ figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
+ sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
+ authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
+ keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
+ dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
+ ...profile.requirements,
182
+ },
183
+ };
184
+
185
+ // Pass through formatting if present
186
+ const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
+ if (formatting && typeof formatting === 'object') {
188
+ normalized.formatting = formatting;
189
+ }
190
+
191
+ return normalized;
192
+ }
193
+
194
+ /**
195
+ * Initialize plugin directories
196
+ */
197
+ export function initPluginDir(project = false): string {
198
+ const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
+
200
+ if (!fs.existsSync(dir)) {
201
+ fs.mkdirSync(dir, { recursive: true });
202
+ }
203
+
204
+ return dir;
205
+ }
206
+
207
+ /**
208
+ * Get plugin directories info
209
+ */
210
+ export function getPluginDirs(): PluginDirsInfo {
211
+ return {
212
+ user: USER_PLUGINS_DIR,
213
+ project: PROJECT_PLUGINS_DIR,
214
+ userExists: fs.existsSync(USER_PLUGINS_DIR),
215
+ projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
+ };
217
+ }
218
+
219
+ /**
220
+ * Create a sample profile template
221
+ */
222
+ export function createProfileTemplate(journalName: string): string {
223
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
+
225
+ return `# Custom journal profile for ${journalName}
226
+ # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
+ # Or: .rev/profiles/${id}.yaml (project-specific)
228
+
229
+ id: ${id}
230
+ name: "${journalName}"
231
+ url: "https://journal-website.com/author-guidelines"
232
+
233
+ # Word count limits
234
+ wordLimit:
235
+ main: 8000 # null for no limit
236
+ abstract: 300
237
+ title: null # characters
238
+
239
+ # Reference requirements
240
+ references:
241
+ max: null # null for no limit
242
+ doiRequired: true
243
+
244
+ # Figure/table limits
245
+ figures:
246
+ max: 8
247
+ combinedWithTables: false
248
+
249
+ # Required sections
250
+ sections:
251
+ required:
252
+ - Abstract
253
+ - Introduction
254
+ - Methods
255
+ - Results
256
+ - Discussion
257
+ methodsPosition: null # 'end' or 'before-results'
258
+
259
+ # Keywords
260
+ keywords:
261
+ min: 4
262
+ max: 8
263
+
264
+ # Other requirements
265
+ dataAvailability: true
266
+ highlights: false
267
+ graphicalAbstract: false
268
+
269
+ # Build formatting defaults (applied via rev build -j ${id})
270
+ # formatting:
271
+ # csl: "${id}" # CSL style name or path
272
+ # pdf:
273
+ # fontsize: 12pt
274
+ # geometry: margin=1in
275
+ # linestretch: 1.5
276
+ # numbersections: false
277
+ # docx:
278
+ # reference: null # Path to reference .docx template
279
+ # crossref:
280
+ # figPrefix: [Fig., Figs.]
281
+ # tblPrefix: [Table, Tables]
282
+ `;
283
+ }
284
+
285
+ /**
286
+ * Save a profile template
287
+ */
288
+ export function saveProfileTemplate(journalName: string, project = false): string {
289
+ const dir = initPluginDir(project);
290
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
+ const filePath = path.join(dir, `${id}.yaml`);
292
+
293
+ if (fs.existsSync(filePath)) {
294
+ throw new Error(`Profile already exists: ${filePath}`);
295
+ }
296
+
297
+ const content = createProfileTemplate(journalName);
298
+ fs.writeFileSync(filePath, content, 'utf-8');
299
+
300
+ return filePath;
301
+ }
302
+
303
+ /**
304
+ * List all custom profiles
305
+ */
306
+ export function listCustomProfiles(): ProfileListEntry[] {
307
+ const result: ProfileListEntry[] = [];
308
+
309
+ // User profiles
310
+ if (fs.existsSync(USER_PLUGINS_DIR)) {
311
+ const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
+ );
314
+
315
+ for (const file of files) {
316
+ try {
317
+ const filePath = path.join(USER_PLUGINS_DIR, file);
318
+ const content = fs.readFileSync(filePath, 'utf-8');
319
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
+
321
+ if (validateProfile(profile)) {
322
+ result.push({
323
+ id: profile.id || path.basename(file, path.extname(file)),
324
+ name: profile.name,
325
+ source: 'user',
326
+ path: filePath,
327
+ });
328
+ }
329
+ } catch {
330
+ // Skip invalid profiles
331
+ }
332
+ }
333
+ }
334
+
335
+ // Project profiles
336
+ if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
+ const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
+ );
340
+
341
+ for (const file of files) {
342
+ try {
343
+ const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
+ const content = fs.readFileSync(filePath, 'utf-8');
345
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
+
347
+ if (validateProfile(profile)) {
348
+ result.push({
349
+ id: profile.id || path.basename(file, path.extname(file)),
350
+ name: profile.name,
351
+ source: 'project',
352
+ path: filePath,
353
+ });
354
+ }
355
+ } catch {
356
+ // Skip invalid profiles
357
+ }
358
+ }
359
+ }
360
+
361
+ return result;
362
+ }