docrev 0.9.13 → 0.9.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (126) hide show
  1. package/.claude/settings.local.json +9 -9
  2. package/.gitattributes +1 -1
  3. package/CHANGELOG.md +149 -149
  4. package/PLAN-tables-and-postprocess.md +850 -850
  5. package/README.md +411 -391
  6. package/bin/rev.js +11 -11
  7. package/bin/rev.ts +145 -145
  8. package/completions/rev.bash +127 -127
  9. package/completions/rev.ps1 +210 -210
  10. package/completions/rev.zsh +207 -207
  11. package/dev_notes/stress2/build_adversarial.ts +186 -186
  12. package/dev_notes/stress2/drift_matcher.ts +62 -62
  13. package/dev_notes/stress2/probe_anchors.ts +35 -35
  14. package/dev_notes/stress2/project/discussion.before.md +3 -3
  15. package/dev_notes/stress2/project/discussion.md +3 -3
  16. package/dev_notes/stress2/project/methods.before.md +20 -20
  17. package/dev_notes/stress2/project/methods.md +20 -20
  18. package/dev_notes/stress2/project/rev.yaml +5 -5
  19. package/dev_notes/stress2/project/sections.yaml +4 -4
  20. package/dev_notes/stress2/sections.yaml +5 -5
  21. package/dev_notes/stress2/trace_placement.ts +50 -50
  22. package/dev_notes/stresstest_boundaries.ts +27 -27
  23. package/dev_notes/stresstest_drift_apply.ts +43 -43
  24. package/dev_notes/stresstest_drift_compare.ts +43 -43
  25. package/dev_notes/stresstest_drift_v2.ts +54 -54
  26. package/dev_notes/stresstest_inspect.ts +54 -54
  27. package/dev_notes/stresstest_pstyle.ts +55 -55
  28. package/dev_notes/stresstest_section_debug.ts +23 -23
  29. package/dev_notes/stresstest_split.ts +70 -70
  30. package/dev_notes/stresstest_trace.ts +19 -19
  31. package/dev_notes/stresstest_verify_no_overwrite.ts +40 -40
  32. package/dist/lib/build.d.ts +38 -1
  33. package/dist/lib/build.d.ts.map +1 -1
  34. package/dist/lib/build.js +68 -30
  35. package/dist/lib/build.js.map +1 -1
  36. package/dist/lib/commands/build.d.ts.map +1 -1
  37. package/dist/lib/commands/build.js +38 -5
  38. package/dist/lib/commands/build.js.map +1 -1
  39. package/dist/lib/commands/utilities.js +164 -164
  40. package/dist/lib/commands/word-tools.js +8 -8
  41. package/dist/lib/grammar.js +3 -3
  42. package/dist/lib/pdf-comments.js +44 -44
  43. package/dist/lib/plugins.js +57 -57
  44. package/dist/lib/pptx-themes.js +115 -115
  45. package/dist/lib/spelling.js +2 -2
  46. package/dist/lib/templates.js +387 -387
  47. package/dist/lib/themes.js +51 -51
  48. package/eslint.config.js +27 -27
  49. package/lib/anchor-match.ts +276 -276
  50. package/lib/annotations.ts +644 -644
  51. package/lib/build.ts +1300 -1251
  52. package/lib/citations.ts +160 -160
  53. package/lib/commands/build.ts +833 -801
  54. package/lib/commands/citations.ts +515 -515
  55. package/lib/commands/comments.ts +1050 -1050
  56. package/lib/commands/context.ts +174 -174
  57. package/lib/commands/core.ts +309 -309
  58. package/lib/commands/doi.ts +435 -435
  59. package/lib/commands/file-ops.ts +372 -372
  60. package/lib/commands/history.ts +320 -320
  61. package/lib/commands/index.ts +87 -87
  62. package/lib/commands/init.ts +259 -259
  63. package/lib/commands/merge-resolve.ts +378 -378
  64. package/lib/commands/preview.ts +178 -178
  65. package/lib/commands/project-info.ts +244 -244
  66. package/lib/commands/quality.ts +517 -517
  67. package/lib/commands/response.ts +454 -454
  68. package/lib/commands/section-boundaries.ts +82 -82
  69. package/lib/commands/sections.ts +451 -451
  70. package/lib/commands/sync.ts +706 -706
  71. package/lib/commands/text-ops.ts +449 -449
  72. package/lib/commands/utilities.ts +448 -448
  73. package/lib/commands/verify-anchors.ts +272 -272
  74. package/lib/commands/word-tools.ts +340 -340
  75. package/lib/comment-realign.ts +517 -517
  76. package/lib/config.ts +84 -84
  77. package/lib/crossref.ts +781 -781
  78. package/lib/csl.ts +191 -191
  79. package/lib/dependencies.ts +98 -98
  80. package/lib/diff-engine.ts +465 -465
  81. package/lib/doi-cache.ts +115 -115
  82. package/lib/doi.ts +897 -897
  83. package/lib/equations.ts +506 -506
  84. package/lib/errors.ts +346 -346
  85. package/lib/format.ts +541 -541
  86. package/lib/git.ts +326 -326
  87. package/lib/grammar.ts +303 -303
  88. package/lib/image-registry.ts +180 -180
  89. package/lib/import.ts +911 -911
  90. package/lib/journals.ts +543 -543
  91. package/lib/merge.ts +633 -633
  92. package/lib/orcid.ts +144 -144
  93. package/lib/pdf-comments.ts +263 -263
  94. package/lib/pdf-import.ts +524 -524
  95. package/lib/plugins.ts +362 -362
  96. package/lib/postprocess.ts +188 -188
  97. package/lib/pptx-color-filter.lua +37 -37
  98. package/lib/pptx-template.ts +469 -469
  99. package/lib/pptx-themes.ts +483 -483
  100. package/lib/protect-restore.ts +520 -520
  101. package/lib/rate-limiter.ts +94 -94
  102. package/lib/response.ts +197 -197
  103. package/lib/restore-references.ts +240 -240
  104. package/lib/review.ts +327 -327
  105. package/lib/schema.ts +417 -417
  106. package/lib/scientific-words.ts +73 -73
  107. package/lib/sections.ts +335 -335
  108. package/lib/slides.ts +756 -756
  109. package/lib/spelling.ts +334 -334
  110. package/lib/templates.ts +526 -526
  111. package/lib/themes.ts +742 -742
  112. package/lib/trackchanges.ts +247 -247
  113. package/lib/tui.ts +450 -450
  114. package/lib/types.ts +550 -550
  115. package/lib/undo.ts +250 -250
  116. package/lib/utils.ts +69 -69
  117. package/lib/variables.ts +179 -179
  118. package/lib/word-extraction.ts +806 -806
  119. package/lib/word.ts +643 -643
  120. package/lib/wordcomments.ts +817 -817
  121. package/package.json +137 -137
  122. package/scripts/postbuild.js +28 -28
  123. package/skill/REFERENCE.md +473 -431
  124. package/skill/SKILL.md +274 -258
  125. package/tsconfig.json +26 -26
  126. package/types/index.d.ts +525 -525
@@ -1,207 +1,207 @@
1
- #compdef rev
2
-
3
- # Zsh completion for rev (docrev)
4
- # Install: add to fpath or run:
5
- # eval "$(rev completions zsh)"
6
-
7
- _rev() {
8
- local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
9
-
10
- commands=(
11
- 'build:Build PDF/DOCX/TEX from sections'
12
- 'new:Create new project from template'
13
- 'import:Import Word document'
14
- 'sections:Import to section files'
15
- 'extract:Extract text from Word'
16
- 'review:Interactive review TUI'
17
- 'status:Show annotation counts'
18
- 'comments:List comments'
19
- 'resolve:Mark comment as resolved'
20
- 'reply:Reply to comments'
21
- 'strip:Output clean markdown'
22
- 'refs:Show reference status'
23
- 'migrate:Convert hardcoded refs'
24
- 'config:Configure settings'
25
- 'install:Check dependencies'
26
- 'doi:DOI validation'
27
- 'citations:Validate citations'
28
- 'equations:Extract equations'
29
- 'figures:List figures'
30
- 'response:Generate response letter'
31
- 'anonymize:Prepare for blind review'
32
- 'validate:Check journal requirements'
33
- 'merge:Merge reviewer feedback'
34
- 'diff:Compare against git history'
35
- 'history:Show revision history'
36
- 'help:Show help'
37
- 'init:Initialize project'
38
- 'split:Split paper.md to sections'
39
- 'word-count:Show word counts per section'
40
- 'wc:Show word counts (alias)'
41
- 'stats:Show project statistics'
42
- 'search:Search across files'
43
- 'backup:Create timestamped backup'
44
- 'export:Export project as zip'
45
- 'preview:Build and open document'
46
- 'watch:Watch and auto-rebuild'
47
- 'lint:Check for issues'
48
- 'grammar:Check grammar and style'
49
- 'annotate:Add comments to DOCX'
50
- 'apply:Apply annotations as track changes'
51
- 'comment:Interactive comment mode'
52
- 'completions:Generate shell completions'
53
- )
54
-
55
- preview_formats=(
56
- 'pdf:Preview PDF'
57
- 'docx:Preview Word document'
58
- )
59
-
60
- build_formats=(
61
- 'pdf:Build PDF'
62
- 'docx:Build Word document'
63
- 'tex:Build LaTeX'
64
- 'all:Build all formats'
65
- )
66
-
67
- doi_actions=(
68
- 'check:Validate DOIs'
69
- 'lookup:Find missing DOIs'
70
- 'fetch:Get BibTeX from DOI'
71
- 'add:Add citation by DOI'
72
- )
73
-
74
- eq_actions=(
75
- 'list:List equations'
76
- 'extract:Extract to file'
77
- 'convert:Convert to Word'
78
- 'from-word:Extract from Word'
79
- )
80
-
81
- help_topics=(
82
- 'workflow:Review workflow'
83
- 'syntax:CriticMarkup syntax'
84
- 'commands:All commands'
85
- )
86
-
87
- journals=(
88
- 'nature:Nature journal'
89
- 'science:Science journal'
90
- 'plos:PLOS ONE'
91
- 'cell:Cell journal'
92
- 'ecology:Ecology journals'
93
- 'custom:Custom profile'
94
- )
95
-
96
- case "$words[2]" in
97
- build)
98
- _describe -t formats 'format' build_formats
99
- _arguments \
100
- '--toc[Include table of contents]' \
101
- '--show-changes[Show track changes in DOCX]' \
102
- '--clean[Clean build files]'
103
- ;;
104
- new)
105
- _arguments \
106
- '--list[List templates]' \
107
- '--template[Template name]:template:(paper minimal thesis proposal)'
108
- ;;
109
- doi)
110
- _describe -t actions 'action' doi_actions
111
- ;;
112
- equations|eq)
113
- _describe -t actions 'action' eq_actions
114
- ;;
115
- validate)
116
- _arguments \
117
- '--list[List journals]' \
118
- '--journal[Journal name]:journal:($journals)'
119
- ;;
120
- help)
121
- _describe -t topics 'topic' help_topics
122
- ;;
123
- config)
124
- _values 'setting' 'user[Set user name]'
125
- ;;
126
- word-count|wc)
127
- _arguments \
128
- '--limit[Word limit]:number:' \
129
- '--journal[Use journal word limit]:journal:'
130
- ;;
131
- preview)
132
- _describe -t formats 'format' preview_formats
133
- ;;
134
- watch)
135
- _arguments \
136
- '--no-open[Do not open after build]'
137
- _values 'format' 'pdf' 'docx' 'all'
138
- ;;
139
- lint)
140
- _arguments \
141
- '--fix[Auto-fix issues]'
142
- ;;
143
- grammar)
144
- _arguments \
145
- '--learn[Add word to dictionary]:word:' \
146
- '--forget[Remove from dictionary]:word:' \
147
- '--list[List dictionary words]' \
148
- '--rules[List grammar rules]' \
149
- '--no-scientific[Disable science rules]' \
150
- '--severity[Minimum severity]:level:(error warning info)'
151
- _files -g '*.md'
152
- ;;
153
- annotate)
154
- _arguments \
155
- '-m[Comment message]:text:' \
156
- '-s[Search text]:text:' \
157
- '-a[Author name]:name:'
158
- _files -g '*.docx'
159
- ;;
160
- apply)
161
- _arguments \
162
- '-a[Author name]:name:'
163
- _files -g '*.md'
164
- ;;
165
- comment)
166
- _arguments \
167
- '-a[Author name]:name:'
168
- _files -g '*.docx'
169
- ;;
170
- completions)
171
- _values 'shell' 'bash' 'zsh'
172
- ;;
173
- import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
174
- _files -g '*.md' -g '*.docx'
175
- ;;
176
- resolve|reply)
177
- _arguments \
178
- '-n[Comment number]:number:' \
179
- '-m[Reply message]:message:'
180
- _files -g '*.md'
181
- ;;
182
- check|lookup|add|citations)
183
- _files -g '*.bib'
184
- ;;
185
- merge)
186
- _files -g '*.md' -g '*.docx'
187
- ;;
188
- backup)
189
- _arguments \
190
- '--name[Custom backup name]:name:' \
191
- '--output[Output directory]:dir:_files -/'
192
- ;;
193
- export)
194
- _arguments \
195
- '--output[Output filename]:file:' \
196
- '--include-output[Include built files]'
197
- ;;
198
- *)
199
- _describe -t commands 'command' commands
200
- _arguments \
201
- '--help[Show help]' \
202
- '--version[Show version]'
203
- ;;
204
- esac
205
- }
206
-
207
- _rev "$@"
1
+ #compdef rev
2
+
3
+ # Zsh completion for rev (docrev)
4
+ # Install: add to fpath or run:
5
+ # eval "$(rev completions zsh)"
6
+
7
+ _rev() {
8
+ local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
9
+
10
+ commands=(
11
+ 'build:Build PDF/DOCX/TEX from sections'
12
+ 'new:Create new project from template'
13
+ 'import:Import Word document'
14
+ 'sections:Import to section files'
15
+ 'extract:Extract text from Word'
16
+ 'review:Interactive review TUI'
17
+ 'status:Show annotation counts'
18
+ 'comments:List comments'
19
+ 'resolve:Mark comment as resolved'
20
+ 'reply:Reply to comments'
21
+ 'strip:Output clean markdown'
22
+ 'refs:Show reference status'
23
+ 'migrate:Convert hardcoded refs'
24
+ 'config:Configure settings'
25
+ 'install:Check dependencies'
26
+ 'doi:DOI validation'
27
+ 'citations:Validate citations'
28
+ 'equations:Extract equations'
29
+ 'figures:List figures'
30
+ 'response:Generate response letter'
31
+ 'anonymize:Prepare for blind review'
32
+ 'validate:Check journal requirements'
33
+ 'merge:Merge reviewer feedback'
34
+ 'diff:Compare against git history'
35
+ 'history:Show revision history'
36
+ 'help:Show help'
37
+ 'init:Initialize project'
38
+ 'split:Split paper.md to sections'
39
+ 'word-count:Show word counts per section'
40
+ 'wc:Show word counts (alias)'
41
+ 'stats:Show project statistics'
42
+ 'search:Search across files'
43
+ 'backup:Create timestamped backup'
44
+ 'export:Export project as zip'
45
+ 'preview:Build and open document'
46
+ 'watch:Watch and auto-rebuild'
47
+ 'lint:Check for issues'
48
+ 'grammar:Check grammar and style'
49
+ 'annotate:Add comments to DOCX'
50
+ 'apply:Apply annotations as track changes'
51
+ 'comment:Interactive comment mode'
52
+ 'completions:Generate shell completions'
53
+ )
54
+
55
+ preview_formats=(
56
+ 'pdf:Preview PDF'
57
+ 'docx:Preview Word document'
58
+ )
59
+
60
+ build_formats=(
61
+ 'pdf:Build PDF'
62
+ 'docx:Build Word document'
63
+ 'tex:Build LaTeX'
64
+ 'all:Build all formats'
65
+ )
66
+
67
+ doi_actions=(
68
+ 'check:Validate DOIs'
69
+ 'lookup:Find missing DOIs'
70
+ 'fetch:Get BibTeX from DOI'
71
+ 'add:Add citation by DOI'
72
+ )
73
+
74
+ eq_actions=(
75
+ 'list:List equations'
76
+ 'extract:Extract to file'
77
+ 'convert:Convert to Word'
78
+ 'from-word:Extract from Word'
79
+ )
80
+
81
+ help_topics=(
82
+ 'workflow:Review workflow'
83
+ 'syntax:CriticMarkup syntax'
84
+ 'commands:All commands'
85
+ )
86
+
87
+ journals=(
88
+ 'nature:Nature journal'
89
+ 'science:Science journal'
90
+ 'plos:PLOS ONE'
91
+ 'cell:Cell journal'
92
+ 'ecology:Ecology journals'
93
+ 'custom:Custom profile'
94
+ )
95
+
96
+ case "$words[2]" in
97
+ build)
98
+ _describe -t formats 'format' build_formats
99
+ _arguments \
100
+ '--toc[Include table of contents]' \
101
+ '--show-changes[Show track changes in DOCX]' \
102
+ '--clean[Clean build files]'
103
+ ;;
104
+ new)
105
+ _arguments \
106
+ '--list[List templates]' \
107
+ '--template[Template name]:template:(paper minimal thesis proposal)'
108
+ ;;
109
+ doi)
110
+ _describe -t actions 'action' doi_actions
111
+ ;;
112
+ equations|eq)
113
+ _describe -t actions 'action' eq_actions
114
+ ;;
115
+ validate)
116
+ _arguments \
117
+ '--list[List journals]' \
118
+ '--journal[Journal name]:journal:($journals)'
119
+ ;;
120
+ help)
121
+ _describe -t topics 'topic' help_topics
122
+ ;;
123
+ config)
124
+ _values 'setting' 'user[Set user name]'
125
+ ;;
126
+ word-count|wc)
127
+ _arguments \
128
+ '--limit[Word limit]:number:' \
129
+ '--journal[Use journal word limit]:journal:'
130
+ ;;
131
+ preview)
132
+ _describe -t formats 'format' preview_formats
133
+ ;;
134
+ watch)
135
+ _arguments \
136
+ '--no-open[Do not open after build]'
137
+ _values 'format' 'pdf' 'docx' 'all'
138
+ ;;
139
+ lint)
140
+ _arguments \
141
+ '--fix[Auto-fix issues]'
142
+ ;;
143
+ grammar)
144
+ _arguments \
145
+ '--learn[Add word to dictionary]:word:' \
146
+ '--forget[Remove from dictionary]:word:' \
147
+ '--list[List dictionary words]' \
148
+ '--rules[List grammar rules]' \
149
+ '--no-scientific[Disable science rules]' \
150
+ '--severity[Minimum severity]:level:(error warning info)'
151
+ _files -g '*.md'
152
+ ;;
153
+ annotate)
154
+ _arguments \
155
+ '-m[Comment message]:text:' \
156
+ '-s[Search text]:text:' \
157
+ '-a[Author name]:name:'
158
+ _files -g '*.docx'
159
+ ;;
160
+ apply)
161
+ _arguments \
162
+ '-a[Author name]:name:'
163
+ _files -g '*.md'
164
+ ;;
165
+ comment)
166
+ _arguments \
167
+ '-a[Author name]:name:'
168
+ _files -g '*.docx'
169
+ ;;
170
+ completions)
171
+ _values 'shell' 'bash' 'zsh'
172
+ ;;
173
+ import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
174
+ _files -g '*.md' -g '*.docx'
175
+ ;;
176
+ resolve|reply)
177
+ _arguments \
178
+ '-n[Comment number]:number:' \
179
+ '-m[Reply message]:message:'
180
+ _files -g '*.md'
181
+ ;;
182
+ check|lookup|add|citations)
183
+ _files -g '*.bib'
184
+ ;;
185
+ merge)
186
+ _files -g '*.md' -g '*.docx'
187
+ ;;
188
+ backup)
189
+ _arguments \
190
+ '--name[Custom backup name]:name:' \
191
+ '--output[Output directory]:dir:_files -/'
192
+ ;;
193
+ export)
194
+ _arguments \
195
+ '--output[Output filename]:file:' \
196
+ '--include-output[Include built files]'
197
+ ;;
198
+ *)
199
+ _describe -t commands 'command' commands
200
+ _arguments \
201
+ '--help[Show help]' \
202
+ '--version[Show version]'
203
+ ;;
204
+ esac
205
+ }
206
+
207
+ _rev "$@"