docrev 0.9.13 → 0.9.15

package/bin/rev.js

@@ -1,12 +1,12 @@
 #!/usr/bin/env node
-
-// Run the compiled TypeScript entry point directly (no tsx needed)
-
-import { pathToFileURL, fileURLToPath } from 'url';
-import { dirname, join } from 'path';
-
-const __dirname = dirname(fileURLToPath(import.meta.url));
-const compiled = join(__dirname, '..', 'dist', 'bin', 'rev.js');
-
-// Windows requires file:// URLs for dynamic ESM imports
-await import(pathToFileURL(compiled).href);
+
+// Run the compiled TypeScript entry point directly (no tsx needed)
+
+import { pathToFileURL, fileURLToPath } from 'url';
+import { dirname, join } from 'path';
+
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const compiled = join(__dirname, '..', 'dist', 'bin', 'rev.js');
+
+// Windows requires file:// URLs for dynamic ESM imports
+await import(pathToFileURL(compiled).href);

package/bin/rev.ts

@@ -1,145 +1,145 @@
-#!/usr/bin/env tsx
-
-/**
- * rev - Revision workflow for Word ↔ Markdown round-trips
- *
- * Handles track changes and comments when collaborating on academic papers.
- * Preserves reviewer feedback through the Markdown editing workflow.
- */
-
-import { program, Command } from 'commander';
-import chalk from 'chalk';
-import * as fs from 'fs';
-
-// Import refactored command modules
-import {
-  registerAllCommands,
-  setQuietMode,
-  setJsonMode,
-} from '../lib/commands/index.js';
-
-// Global flags
-let quietMode = false;
-let jsonMode = false;
-
-// Levenshtein distance for command suggestions
-function levenshtein(a: string, b: string): number {
-  const matrix: number[][] = Array(b.length + 1).fill(null).map(() => Array(a.length + 1).fill(0));
-  for (let i = 0; i <= a.length; i++) matrix[0]![i] = i;
-  for (let j = 0; j <= b.length; j++) matrix[j]![0] = j;
-  for (let j = 1; j <= b.length; j++) {
-    for (let i = 1; i <= a.length; i++) {
-      const cost = a[i - 1] === b[j - 1] ? 0 : 1;
-      matrix[j]![i] = Math.min(
-        matrix[j]![i - 1]! + 1,
-        matrix[j - 1]![i]! + 1,
-        matrix[j - 1]![i - 1]! + cost
-      );
-    }
-  }
-  return matrix[b.length]![a.length]!;
-}
-
-// Find similar commands for typo suggestions
-function suggestCommand(input: string, commands: string[]): string[] {
-  const suggestions = commands
-    .map(cmd => ({ cmd, dist: levenshtein(input.toLowerCase(), cmd.toLowerCase()) }))
-    .filter(({ dist }) => dist <= 3)
-    .sort((a, b) => a.dist - b.dist)
-    .slice(0, 3)
-    .map(({ cmd }) => cmd);
-  return suggestions;
-}
-
-interface PackageJson {
-  version: string;
-  name?: string;
-  description?: string;
-  [key: string]: unknown;
-}
-
-// Read version from package.json
-const pkgPath = new URL('../package.json', import.meta.url);
-const pkg: PackageJson = JSON.parse(fs.readFileSync(pkgPath, 'utf-8'));
-
-program
-  .name('rev')
-  .description('Revision workflow for Word ↔ Markdown round-trips')
-  .version(`${pkg.version}\nNode ${process.version} | ${process.platform} ${process.arch}`, '-V, --version', 'Output version information')
-  .configureOutput({
-    outputError: (str: string, write: (str: string) => void) => write(chalk.red(str)),
-  })
-  .showHelpAfterError(chalk.dim('(use --help for usage information)'))
-  .option('--no-color', 'Disable colored output')
-  .option('-q, --quiet', 'Suppress non-essential output')
-  .option('--json', 'Output in JSON format (for scripting)')
-  .hook('preAction', (thisCommand: Command) => {
-    const opts = thisCommand.opts<{ color?: boolean; quiet?: boolean; json?: boolean }>();
-    if (opts.color === false) {
-      chalk.level = 0;
-    }
-    if (opts.quiet) {
-      quietMode = true;
-      setQuietMode(true);
-    }
-    if (opts.json) {
-      jsonMode = true;
-      setJsonMode(true);
-      chalk.level = 0; // Disable colors in JSON mode
-    }
-  });
-
-// Register all command modules
-// Commands organized by module:
-//   core.js: review, strip, status
-//   comments.js: comments, resolve, next, prev, first, last, todo, accept, reject, reply
-//   init.js: init, new, config
-//   sections.js: import, extract, split, sync, merge
-//   build.js: refs, migrate, install, doctor, build
-//   response.js: response, validate, profiles, anonymize
-//   citations.js: citations, figures, equations, pdf-comments
-//   doi.js: doi, orcid
-//   history.js: diff, history, contributors
-//   utilities.js: help, completions, word-count, stats, search, backup, archive,
-//                 export, preview, watch, lint, grammar, annotate, apply, comment,
-//                 clean, check, open, spelling, upgrade, batch, install-cli-skill
-registerAllCommands(program, pkg);
-
-// Get all command names for typo suggestions
-const allCommands = program.commands.map(cmd => cmd.name());
-const allAliases = program.commands.flatMap(cmd => cmd.aliases());
-const allCommandNames = [...allCommands, ...allAliases];
-
-// Handle unknown commands with suggestions
-program.on('command:*', (operands: string[]) => {
-  const unknown = operands[0];
-  console.error(chalk.red(`Unknown command: ${unknown}`));
-
-  const suggestions = suggestCommand(unknown!, allCommandNames);
-  if (suggestions.length > 0) {
-    console.error();
-    console.error(chalk.yellow('Did you mean?'));
-    for (const s of suggestions) {
-      console.error(chalk.cyan(`  rev ${s}`));
-    }
-  }
-  console.error();
-  console.error(chalk.dim('Run "rev help" for available commands.'));
-  process.exit(1);
-});
-
-// Default to status when no command given
-const args = process.argv.slice(2);
-const globalOpts = ['--no-color', '-q', '--quiet', '--json', '-V', '--version', '-h', '--help'];
-const hasOnlyGlobalOpts = args.every(arg => globalOpts.includes(arg) || arg.startsWith('--no-') || arg.startsWith('-'));
-const hasCommand = args.some(arg => !arg.startsWith('-') && !globalOpts.includes(arg));
-
-if (args.length === 0 || (hasOnlyGlobalOpts && !hasCommand && !args.includes('-h') && !args.includes('--help') && !args.includes('-V') && !args.includes('--version'))) {
-  // Insert 'status' after any global options
-  const insertPos = process.argv.findIndex((arg, i) => i >= 2 && !arg.startsWith('-'));
-  if (insertPos === -1) {
-    process.argv.push('status');
-  }
-}
-
-program.parse();
+#!/usr/bin/env tsx
+
+/**
+ * rev - Revision workflow for Word ↔ Markdown round-trips
+ *
+ * Handles track changes and comments when collaborating on academic papers.
+ * Preserves reviewer feedback through the Markdown editing workflow.
+ */
+
+import { program, Command } from 'commander';
+import chalk from 'chalk';
+import * as fs from 'fs';
+
+// Import refactored command modules
+import {
+  registerAllCommands,
+  setQuietMode,
+  setJsonMode,
+} from '../lib/commands/index.js';
+
+// Global flags
+let quietMode = false;
+let jsonMode = false;
+
+// Levenshtein distance for command suggestions
+function levenshtein(a: string, b: string): number {
+  const matrix: number[][] = Array(b.length + 1).fill(null).map(() => Array(a.length + 1).fill(0));
+  for (let i = 0; i <= a.length; i++) matrix[0]![i] = i;
+  for (let j = 0; j <= b.length; j++) matrix[j]![0] = j;
+  for (let j = 1; j <= b.length; j++) {
+    for (let i = 1; i <= a.length; i++) {
+      const cost = a[i - 1] === b[j - 1] ? 0 : 1;
+      matrix[j]![i] = Math.min(
+        matrix[j]![i - 1]! + 1,
+        matrix[j - 1]![i]! + 1,
+        matrix[j - 1]![i - 1]! + cost
+      );
+    }
+  }
+  return matrix[b.length]![a.length]!;
+}
+
+// Find similar commands for typo suggestions
+function suggestCommand(input: string, commands: string[]): string[] {
+  const suggestions = commands
+    .map(cmd => ({ cmd, dist: levenshtein(input.toLowerCase(), cmd.toLowerCase()) }))
+    .filter(({ dist }) => dist <= 3)
+    .sort((a, b) => a.dist - b.dist)
+    .slice(0, 3)
+    .map(({ cmd }) => cmd);
+  return suggestions;
+}
+
+interface PackageJson {
+  version: string;
+  name?: string;
+  description?: string;
+  [key: string]: unknown;
+}
+
+// Read version from package.json
+const pkgPath = new URL('../package.json', import.meta.url);
+const pkg: PackageJson = JSON.parse(fs.readFileSync(pkgPath, 'utf-8'));
+
+program
+  .name('rev')
+  .description('Revision workflow for Word ↔ Markdown round-trips')
+  .version(`${pkg.version}\nNode ${process.version} | ${process.platform} ${process.arch}`, '-V, --version', 'Output version information')
+  .configureOutput({
+    outputError: (str: string, write: (str: string) => void) => write(chalk.red(str)),
+  })
+  .showHelpAfterError(chalk.dim('(use --help for usage information)'))
+  .option('--no-color', 'Disable colored output')
+  .option('-q, --quiet', 'Suppress non-essential output')
+  .option('--json', 'Output in JSON format (for scripting)')
+  .hook('preAction', (thisCommand: Command) => {
+    const opts = thisCommand.opts<{ color?: boolean; quiet?: boolean; json?: boolean }>();
+    if (opts.color === false) {
+      chalk.level = 0;
+    }
+    if (opts.quiet) {
+      quietMode = true;
+      setQuietMode(true);
+    }
+    if (opts.json) {
+      jsonMode = true;
+      setJsonMode(true);
+      chalk.level = 0; // Disable colors in JSON mode
+    }
+  });
+
+// Register all command modules
+// Commands organized by module:
+//   core.js: review, strip, status
+//   comments.js: comments, resolve, next, prev, first, last, todo, accept, reject, reply
+//   init.js: init, new, config
+//   sections.js: import, extract, split, sync, merge
+//   build.js: refs, migrate, install, doctor, build
+//   response.js: response, validate, profiles, anonymize
+//   citations.js: citations, figures, equations, pdf-comments
+//   doi.js: doi, orcid
+//   history.js: diff, history, contributors
+//   utilities.js: help, completions, word-count, stats, search, backup, archive,
+//                 export, preview, watch, lint, grammar, annotate, apply, comment,
+//                 clean, check, open, spelling, upgrade, batch, install-cli-skill
+registerAllCommands(program, pkg);
+
+// Get all command names for typo suggestions
+const allCommands = program.commands.map(cmd => cmd.name());
+const allAliases = program.commands.flatMap(cmd => cmd.aliases());
+const allCommandNames = [...allCommands, ...allAliases];
+
+// Handle unknown commands with suggestions
+program.on('command:*', (operands: string[]) => {
+  const unknown = operands[0];
+  console.error(chalk.red(`Unknown command: ${unknown}`));
+
+  const suggestions = suggestCommand(unknown!, allCommandNames);
+  if (suggestions.length > 0) {
+    console.error();
+    console.error(chalk.yellow('Did you mean?'));
+    for (const s of suggestions) {
+      console.error(chalk.cyan(`  rev ${s}`));
+    }
+  }
+  console.error();
+  console.error(chalk.dim('Run "rev help" for available commands.'));
+  process.exit(1);
+});
+
+// Default to status when no command given
+const args = process.argv.slice(2);
+const globalOpts = ['--no-color', '-q', '--quiet', '--json', '-V', '--version', '-h', '--help'];
+const hasOnlyGlobalOpts = args.every(arg => globalOpts.includes(arg) || arg.startsWith('--no-') || arg.startsWith('-'));
+const hasCommand = args.some(arg => !arg.startsWith('-') && !globalOpts.includes(arg));
+
+if (args.length === 0 || (hasOnlyGlobalOpts && !hasCommand && !args.includes('-h') && !args.includes('--help') && !args.includes('-V') && !args.includes('--version'))) {
+  // Insert 'status' after any global options
+  const insertPos = process.argv.findIndex((arg, i) => i >= 2 && !arg.startsWith('-'));
+  if (insertPos === -1) {
+    process.argv.push('status');
+  }
+}
+
+program.parse();

package/completions/rev.bash

@@ -1,127 +1,127 @@
-# Bash completion for rev (docrev)
-# Install: source this file or add to ~/.bashrc:
-#   eval "$(rev completions bash)"
-
-_rev_completions() {
-    local cur prev words cword
-    _init_completion || return
-
-    local commands="build new import sections extract review status comments resolve reply strip refs migrate config install doi citations equations figures response anonymize validate merge diff history help init split word-count wc stats search backup export preview watch lint grammar annotate apply comment completions"
-    local build_formats="pdf docx tex all"
-    local doi_actions="check lookup fetch add"
-    local eq_actions="list extract convert from-word"
-    local help_topics="workflow syntax commands"
-    local preview_formats="pdf docx"
-
-    case "${prev}" in
-        rev)
-            COMPREPLY=($(compgen -W "${commands} --help --version" -- "${cur}"))
-            return
-            ;;
-        build)
-            COMPREPLY=($(compgen -W "${build_formats} --toc --show-changes --clean" -- "${cur}"))
-            return
-            ;;
-        new)
-            COMPREPLY=($(compgen -W "--list --template" -- "${cur}"))
-            return
-            ;;
-        --template)
-            COMPREPLY=($(compgen -W "paper minimal thesis proposal" -- "${cur}"))
-            return
-            ;;
-        doi)
-            COMPREPLY=($(compgen -W "${doi_actions}" -- "${cur}"))
-            return
-            ;;
-        equations|eq)
-            COMPREPLY=($(compgen -W "${eq_actions}" -- "${cur}"))
-            return
-            ;;
-        validate)
-            COMPREPLY=($(compgen -W "--journal --list" -- "${cur}"))
-            return
-            ;;
-        --journal)
-            COMPREPLY=($(compgen -W "nature science plos cell ecology custom" -- "${cur}"))
-            return
-            ;;
-        help)
-            COMPREPLY=($(compgen -W "${help_topics}" -- "${cur}"))
-            return
-            ;;
-        config)
-            COMPREPLY=($(compgen -W "user" -- "${cur}"))
-            return
-            ;;
-        word-count|wc)
-            COMPREPLY=($(compgen -W "--limit --journal" -- "${cur}"))
-            return
-            ;;
-        preview)
-            COMPREPLY=($(compgen -W "${preview_formats}" -- "${cur}"))
-            return
-            ;;
-        watch)
-            COMPREPLY=($(compgen -W "pdf docx all --no-open" -- "${cur}"))
-            return
-            ;;
-        lint)
-            COMPREPLY=($(compgen -W "--fix" -- "${cur}"))
-            return
-            ;;
-        grammar)
-            COMPREPLY=($(compgen -W "--learn --forget --list --rules --no-scientific --severity" -- "${cur}"))
-            return
-            ;;
-        annotate)
-            COMPREPLY=($(compgen -f -X '!*.docx' -- "${cur}"))
-            return
-            ;;
-        apply)
-            COMPREPLY=($(compgen -f -X '!*.md' -- "${cur}"))
-            return
-            ;;
-        comment)
-            COMPREPLY=($(compgen -f -X '!*.docx' -- "${cur}"))
-            return
-            ;;
-        completions)
-            COMPREPLY=($(compgen -W "bash zsh" -- "${cur}"))
-            return
-            ;;
-        import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split)
-            # Complete with .md and .docx files
-            COMPREPLY=($(compgen -f -X '!*.@(md|docx)' -- "${cur}"))
-            return
-            ;;
-        resolve|reply)
-            # Complete with -n option or .md files
-            if [[ "${cur}" == -* ]]; then
-                COMPREPLY=($(compgen -W "-n -m" -- "${cur}"))
-            else
-                COMPREPLY=($(compgen -f -X '!*.md' -- "${cur}"))
-            fi
-            return
-            ;;
-        check|lookup|add|fetch)
-            # DOI subcommands - complete with .bib files
-            COMPREPLY=($(compgen -f -X '!*.bib' -- "${cur}"))
-            return
-            ;;
-        citations)
-            COMPREPLY=($(compgen -f -X '!*.bib' -- "${cur}"))
-            return
-            ;;
-        merge)
-            # Complete with .md and .docx files
-            COMPREPLY=($(compgen -f -X '!*.@(md|docx)' -- "${cur}"))
-            return
-            ;;
-    esac
-
-    # Default: complete with files
-    COMPREPLY=($(compgen -f -- "${cur}"))
-}
-
-complete -F _rev_completions rev
+# Bash completion for rev (docrev)
+# Install: source this file or add to ~/.bashrc:
+#   eval "$(rev completions bash)"
+
+_rev_completions() {
+    local cur prev words cword
+    _init_completion || return
+
+    local commands="build new import sections extract review status comments resolve reply strip refs migrate config install doi citations equations figures response anonymize validate merge diff history help init split word-count wc stats search backup export preview watch lint grammar annotate apply comment completions"
+    local build_formats="pdf docx tex all"
+    local doi_actions="check lookup fetch add"
+    local eq_actions="list extract convert from-word"
+    local help_topics="workflow syntax commands"
+    local preview_formats="pdf docx"
+
+    case "${prev}" in
+        rev)
+            COMPREPLY=($(compgen -W "${commands} --help --version" -- "${cur}"))
+            return
+            ;;
+        build)
+            COMPREPLY=($(compgen -W "${build_formats} --toc --show-changes --clean" -- "${cur}"))
+            return
+            ;;
+        new)
+            COMPREPLY=($(compgen -W "--list --template" -- "${cur}"))
+            return
+            ;;
+        --template)
+            COMPREPLY=($(compgen -W "paper minimal thesis proposal" -- "${cur}"))
+            return
+            ;;
+        doi)
+            COMPREPLY=($(compgen -W "${doi_actions}" -- "${cur}"))
+            return
+            ;;
+        equations|eq)
+            COMPREPLY=($(compgen -W "${eq_actions}" -- "${cur}"))
+            return
+            ;;
+        validate)
+            COMPREPLY=($(compgen -W "--journal --list" -- "${cur}"))
+            return
+            ;;
+        --journal)
+            COMPREPLY=($(compgen -W "nature science plos cell ecology custom" -- "${cur}"))
+            return
+            ;;
+        help)
+            COMPREPLY=($(compgen -W "${help_topics}" -- "${cur}"))
+            return
+            ;;
+        config)
+            COMPREPLY=($(compgen -W "user" -- "${cur}"))
+            return
+            ;;
+        word-count|wc)
+            COMPREPLY=($(compgen -W "--limit --journal" -- "${cur}"))
+            return
+            ;;
+        preview)
+            COMPREPLY=($(compgen -W "${preview_formats}" -- "${cur}"))
+            return
+            ;;
+        watch)
+            COMPREPLY=($(compgen -W "pdf docx all --no-open" -- "${cur}"))
+            return
+            ;;
+        lint)
+            COMPREPLY=($(compgen -W "--fix" -- "${cur}"))
+            return
+            ;;
+        grammar)
+            COMPREPLY=($(compgen -W "--learn --forget --list --rules --no-scientific --severity" -- "${cur}"))
+            return
+            ;;
+        annotate)
+            COMPREPLY=($(compgen -f -X '!*.docx' -- "${cur}"))
+            return
+            ;;
+        apply)
+            COMPREPLY=($(compgen -f -X '!*.md' -- "${cur}"))
+            return
+            ;;
+        comment)
+            COMPREPLY=($(compgen -f -X '!*.docx' -- "${cur}"))
+            return
+            ;;
+        completions)
+            COMPREPLY=($(compgen -W "bash zsh" -- "${cur}"))
+            return
+            ;;
+        import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split)
+            # Complete with .md and .docx files
+            COMPREPLY=($(compgen -f -X '!*.@(md|docx)' -- "${cur}"))
+            return
+            ;;
+        resolve|reply)
+            # Complete with -n option or .md files
+            if [[ "${cur}" == -* ]]; then
+                COMPREPLY=($(compgen -W "-n -m" -- "${cur}"))
+            else
+                COMPREPLY=($(compgen -f -X '!*.md' -- "${cur}"))
+            fi
+            return
+            ;;
+        check|lookup|add|fetch)
+            # DOI subcommands - complete with .bib files
+            COMPREPLY=($(compgen -f -X '!*.bib' -- "${cur}"))
+            return
+            ;;
+        citations)
+            COMPREPLY=($(compgen -f -X '!*.bib' -- "${cur}"))
+            return
+            ;;
+        merge)
+            # Complete with .md and .docx files
+            COMPREPLY=($(compgen -f -X '!*.@(md|docx)' -- "${cur}"))
+            return
+            ;;
+    esac
+
+    # Default: complete with files
+    COMPREPLY=($(compgen -f -- "${cur}"))
+}
+
+complete -F _rev_completions rev