docrev 0.9.11 → 0.9.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (138) hide show
  1. package/.claude/settings.local.json +9 -9
  2. package/.gitattributes +1 -1
  3. package/CHANGELOG.md +149 -149
  4. package/PLAN-tables-and-postprocess.md +850 -850
  5. package/README.md +391 -391
  6. package/bin/rev.js +11 -11
  7. package/bin/rev.ts +145 -145
  8. package/completions/rev.bash +127 -127
  9. package/completions/rev.ps1 +210 -210
  10. package/completions/rev.zsh +207 -207
  11. package/dev_notes/stress2/build_adversarial.ts +186 -186
  12. package/dev_notes/stress2/drift_matcher.ts +62 -62
  13. package/dev_notes/stress2/probe_anchors.ts +35 -35
  14. package/dev_notes/stress2/project/discussion.before.md +3 -3
  15. package/dev_notes/stress2/project/discussion.md +3 -3
  16. package/dev_notes/stress2/project/methods.before.md +20 -20
  17. package/dev_notes/stress2/project/methods.md +20 -20
  18. package/dev_notes/stress2/project/rev.yaml +5 -5
  19. package/dev_notes/stress2/project/sections.yaml +4 -4
  20. package/dev_notes/stress2/sections.yaml +5 -5
  21. package/dev_notes/stress2/trace_placement.ts +50 -50
  22. package/dev_notes/stresstest_boundaries.ts +27 -27
  23. package/dev_notes/stresstest_drift_apply.ts +43 -43
  24. package/dev_notes/stresstest_drift_compare.ts +43 -43
  25. package/dev_notes/stresstest_drift_v2.ts +54 -54
  26. package/dev_notes/stresstest_inspect.ts +54 -54
  27. package/dev_notes/stresstest_pstyle.ts +55 -55
  28. package/dev_notes/stresstest_section_debug.ts +23 -23
  29. package/dev_notes/stresstest_split.ts +70 -70
  30. package/dev_notes/stresstest_trace.ts +19 -19
  31. package/dev_notes/stresstest_verify_no_overwrite.ts +40 -40
  32. package/dist/lib/build.d.ts +50 -1
  33. package/dist/lib/build.d.ts.map +1 -1
  34. package/dist/lib/build.js +80 -30
  35. package/dist/lib/build.js.map +1 -1
  36. package/dist/lib/commands/build.d.ts.map +1 -1
  37. package/dist/lib/commands/build.js +38 -5
  38. package/dist/lib/commands/build.js.map +1 -1
  39. package/dist/lib/commands/utilities.js +164 -164
  40. package/dist/lib/commands/word-tools.js +8 -8
  41. package/dist/lib/grammar.js +3 -3
  42. package/dist/lib/import.d.ts.map +1 -1
  43. package/dist/lib/import.js +146 -24
  44. package/dist/lib/import.js.map +1 -1
  45. package/dist/lib/pdf-comments.js +44 -44
  46. package/dist/lib/plugins.js +57 -57
  47. package/dist/lib/pptx-themes.js +115 -115
  48. package/dist/lib/spelling.js +2 -2
  49. package/dist/lib/templates.js +387 -387
  50. package/dist/lib/themes.js +51 -51
  51. package/dist/lib/types.d.ts +20 -0
  52. package/dist/lib/types.d.ts.map +1 -1
  53. package/dist/lib/word-extraction.d.ts +6 -0
  54. package/dist/lib/word-extraction.d.ts.map +1 -1
  55. package/dist/lib/word-extraction.js +46 -3
  56. package/dist/lib/word-extraction.js.map +1 -1
  57. package/dist/lib/wordcomments.d.ts.map +1 -1
  58. package/dist/lib/wordcomments.js +23 -5
  59. package/dist/lib/wordcomments.js.map +1 -1
  60. package/eslint.config.js +27 -27
  61. package/lib/anchor-match.ts +276 -276
  62. package/lib/annotations.ts +644 -644
  63. package/lib/build.ts +1300 -1227
  64. package/lib/citations.ts +160 -160
  65. package/lib/commands/build.ts +833 -801
  66. package/lib/commands/citations.ts +515 -515
  67. package/lib/commands/comments.ts +1050 -1050
  68. package/lib/commands/context.ts +174 -174
  69. package/lib/commands/core.ts +309 -309
  70. package/lib/commands/doi.ts +435 -435
  71. package/lib/commands/file-ops.ts +372 -372
  72. package/lib/commands/history.ts +320 -320
  73. package/lib/commands/index.ts +87 -87
  74. package/lib/commands/init.ts +259 -259
  75. package/lib/commands/merge-resolve.ts +378 -378
  76. package/lib/commands/preview.ts +178 -178
  77. package/lib/commands/project-info.ts +244 -244
  78. package/lib/commands/quality.ts +517 -517
  79. package/lib/commands/response.ts +454 -454
  80. package/lib/commands/section-boundaries.ts +82 -82
  81. package/lib/commands/sections.ts +451 -451
  82. package/lib/commands/sync.ts +706 -706
  83. package/lib/commands/text-ops.ts +449 -449
  84. package/lib/commands/utilities.ts +448 -448
  85. package/lib/commands/verify-anchors.ts +272 -272
  86. package/lib/commands/word-tools.ts +340 -340
  87. package/lib/comment-realign.ts +517 -517
  88. package/lib/config.ts +84 -84
  89. package/lib/crossref.ts +781 -781
  90. package/lib/csl.ts +191 -191
  91. package/lib/dependencies.ts +98 -98
  92. package/lib/diff-engine.ts +465 -465
  93. package/lib/doi-cache.ts +115 -115
  94. package/lib/doi.ts +897 -897
  95. package/lib/equations.ts +506 -506
  96. package/lib/errors.ts +346 -346
  97. package/lib/format.ts +541 -541
  98. package/lib/git.ts +326 -326
  99. package/lib/grammar.ts +303 -303
  100. package/lib/image-registry.ts +180 -180
  101. package/lib/import.ts +911 -792
  102. package/lib/journals.ts +543 -543
  103. package/lib/merge.ts +633 -633
  104. package/lib/orcid.ts +144 -144
  105. package/lib/pdf-comments.ts +263 -263
  106. package/lib/pdf-import.ts +524 -524
  107. package/lib/plugins.ts +362 -362
  108. package/lib/postprocess.ts +188 -188
  109. package/lib/pptx-color-filter.lua +37 -37
  110. package/lib/pptx-template.ts +469 -469
  111. package/lib/pptx-themes.ts +483 -483
  112. package/lib/protect-restore.ts +520 -520
  113. package/lib/rate-limiter.ts +94 -94
  114. package/lib/response.ts +197 -197
  115. package/lib/restore-references.ts +240 -240
  116. package/lib/review.ts +327 -327
  117. package/lib/schema.ts +417 -417
  118. package/lib/scientific-words.ts +73 -73
  119. package/lib/sections.ts +335 -335
  120. package/lib/slides.ts +756 -756
  121. package/lib/spelling.ts +334 -334
  122. package/lib/templates.ts +526 -526
  123. package/lib/themes.ts +742 -742
  124. package/lib/trackchanges.ts +247 -247
  125. package/lib/tui.ts +450 -450
  126. package/lib/types.ts +550 -530
  127. package/lib/undo.ts +250 -250
  128. package/lib/utils.ts +69 -69
  129. package/lib/variables.ts +179 -179
  130. package/lib/word-extraction.ts +806 -759
  131. package/lib/word.ts +643 -643
  132. package/lib/wordcomments.ts +817 -798
  133. package/package.json +137 -137
  134. package/scripts/postbuild.js +28 -28
  135. package/skill/REFERENCE.md +431 -431
  136. package/skill/SKILL.md +258 -258
  137. package/tsconfig.json +26 -26
  138. package/types/index.d.ts +525 -525
@@ -1,207 +1,207 @@
1
- #compdef rev
2
-
3
- # Zsh completion for rev (docrev)
4
- # Install: add to fpath or run:
5
- # eval "$(rev completions zsh)"
6
-
7
- _rev() {
8
- local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
9
-
10
- commands=(
11
- 'build:Build PDF/DOCX/TEX from sections'
12
- 'new:Create new project from template'
13
- 'import:Import Word document'
14
- 'sections:Import to section files'
15
- 'extract:Extract text from Word'
16
- 'review:Interactive review TUI'
17
- 'status:Show annotation counts'
18
- 'comments:List comments'
19
- 'resolve:Mark comment as resolved'
20
- 'reply:Reply to comments'
21
- 'strip:Output clean markdown'
22
- 'refs:Show reference status'
23
- 'migrate:Convert hardcoded refs'
24
- 'config:Configure settings'
25
- 'install:Check dependencies'
26
- 'doi:DOI validation'
27
- 'citations:Validate citations'
28
- 'equations:Extract equations'
29
- 'figures:List figures'
30
- 'response:Generate response letter'
31
- 'anonymize:Prepare for blind review'
32
- 'validate:Check journal requirements'
33
- 'merge:Merge reviewer feedback'
34
- 'diff:Compare against git history'
35
- 'history:Show revision history'
36
- 'help:Show help'
37
- 'init:Initialize project'
38
- 'split:Split paper.md to sections'
39
- 'word-count:Show word counts per section'
40
- 'wc:Show word counts (alias)'
41
- 'stats:Show project statistics'
42
- 'search:Search across files'
43
- 'backup:Create timestamped backup'
44
- 'export:Export project as zip'
45
- 'preview:Build and open document'
46
- 'watch:Watch and auto-rebuild'
47
- 'lint:Check for issues'
48
- 'grammar:Check grammar and style'
49
- 'annotate:Add comments to DOCX'
50
- 'apply:Apply annotations as track changes'
51
- 'comment:Interactive comment mode'
52
- 'completions:Generate shell completions'
53
- )
54
-
55
- preview_formats=(
56
- 'pdf:Preview PDF'
57
- 'docx:Preview Word document'
58
- )
59
-
60
- build_formats=(
61
- 'pdf:Build PDF'
62
- 'docx:Build Word document'
63
- 'tex:Build LaTeX'
64
- 'all:Build all formats'
65
- )
66
-
67
- doi_actions=(
68
- 'check:Validate DOIs'
69
- 'lookup:Find missing DOIs'
70
- 'fetch:Get BibTeX from DOI'
71
- 'add:Add citation by DOI'
72
- )
73
-
74
- eq_actions=(
75
- 'list:List equations'
76
- 'extract:Extract to file'
77
- 'convert:Convert to Word'
78
- 'from-word:Extract from Word'
79
- )
80
-
81
- help_topics=(
82
- 'workflow:Review workflow'
83
- 'syntax:CriticMarkup syntax'
84
- 'commands:All commands'
85
- )
86
-
87
- journals=(
88
- 'nature:Nature journal'
89
- 'science:Science journal'
90
- 'plos:PLOS ONE'
91
- 'cell:Cell journal'
92
- 'ecology:Ecology journals'
93
- 'custom:Custom profile'
94
- )
95
-
96
- case "$words[2]" in
97
- build)
98
- _describe -t formats 'format' build_formats
99
- _arguments \
100
- '--toc[Include table of contents]' \
101
- '--show-changes[Show track changes in DOCX]' \
102
- '--clean[Clean build files]'
103
- ;;
104
- new)
105
- _arguments \
106
- '--list[List templates]' \
107
- '--template[Template name]:template:(paper minimal thesis proposal)'
108
- ;;
109
- doi)
110
- _describe -t actions 'action' doi_actions
111
- ;;
112
- equations|eq)
113
- _describe -t actions 'action' eq_actions
114
- ;;
115
- validate)
116
- _arguments \
117
- '--list[List journals]' \
118
- '--journal[Journal name]:journal:($journals)'
119
- ;;
120
- help)
121
- _describe -t topics 'topic' help_topics
122
- ;;
123
- config)
124
- _values 'setting' 'user[Set user name]'
125
- ;;
126
- word-count|wc)
127
- _arguments \
128
- '--limit[Word limit]:number:' \
129
- '--journal[Use journal word limit]:journal:'
130
- ;;
131
- preview)
132
- _describe -t formats 'format' preview_formats
133
- ;;
134
- watch)
135
- _arguments \
136
- '--no-open[Do not open after build]'
137
- _values 'format' 'pdf' 'docx' 'all'
138
- ;;
139
- lint)
140
- _arguments \
141
- '--fix[Auto-fix issues]'
142
- ;;
143
- grammar)
144
- _arguments \
145
- '--learn[Add word to dictionary]:word:' \
146
- '--forget[Remove from dictionary]:word:' \
147
- '--list[List dictionary words]' \
148
- '--rules[List grammar rules]' \
149
- '--no-scientific[Disable science rules]' \
150
- '--severity[Minimum severity]:level:(error warning info)'
151
- _files -g '*.md'
152
- ;;
153
- annotate)
154
- _arguments \
155
- '-m[Comment message]:text:' \
156
- '-s[Search text]:text:' \
157
- '-a[Author name]:name:'
158
- _files -g '*.docx'
159
- ;;
160
- apply)
161
- _arguments \
162
- '-a[Author name]:name:'
163
- _files -g '*.md'
164
- ;;
165
- comment)
166
- _arguments \
167
- '-a[Author name]:name:'
168
- _files -g '*.docx'
169
- ;;
170
- completions)
171
- _values 'shell' 'bash' 'zsh'
172
- ;;
173
- import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
174
- _files -g '*.md' -g '*.docx'
175
- ;;
176
- resolve|reply)
177
- _arguments \
178
- '-n[Comment number]:number:' \
179
- '-m[Reply message]:message:'
180
- _files -g '*.md'
181
- ;;
182
- check|lookup|add|citations)
183
- _files -g '*.bib'
184
- ;;
185
- merge)
186
- _files -g '*.md' -g '*.docx'
187
- ;;
188
- backup)
189
- _arguments \
190
- '--name[Custom backup name]:name:' \
191
- '--output[Output directory]:dir:_files -/'
192
- ;;
193
- export)
194
- _arguments \
195
- '--output[Output filename]:file:' \
196
- '--include-output[Include built files]'
197
- ;;
198
- *)
199
- _describe -t commands 'command' commands
200
- _arguments \
201
- '--help[Show help]' \
202
- '--version[Show version]'
203
- ;;
204
- esac
205
- }
206
-
207
- _rev "$@"
1
+ #compdef rev
2
+
3
+ # Zsh completion for rev (docrev)
4
+ # Install: add to fpath or run:
5
+ # eval "$(rev completions zsh)"
6
+
7
+ _rev() {
8
+ local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
9
+
10
+ commands=(
11
+ 'build:Build PDF/DOCX/TEX from sections'
12
+ 'new:Create new project from template'
13
+ 'import:Import Word document'
14
+ 'sections:Import to section files'
15
+ 'extract:Extract text from Word'
16
+ 'review:Interactive review TUI'
17
+ 'status:Show annotation counts'
18
+ 'comments:List comments'
19
+ 'resolve:Mark comment as resolved'
20
+ 'reply:Reply to comments'
21
+ 'strip:Output clean markdown'
22
+ 'refs:Show reference status'
23
+ 'migrate:Convert hardcoded refs'
24
+ 'config:Configure settings'
25
+ 'install:Check dependencies'
26
+ 'doi:DOI validation'
27
+ 'citations:Validate citations'
28
+ 'equations:Extract equations'
29
+ 'figures:List figures'
30
+ 'response:Generate response letter'
31
+ 'anonymize:Prepare for blind review'
32
+ 'validate:Check journal requirements'
33
+ 'merge:Merge reviewer feedback'
34
+ 'diff:Compare against git history'
35
+ 'history:Show revision history'
36
+ 'help:Show help'
37
+ 'init:Initialize project'
38
+ 'split:Split paper.md to sections'
39
+ 'word-count:Show word counts per section'
40
+ 'wc:Show word counts (alias)'
41
+ 'stats:Show project statistics'
42
+ 'search:Search across files'
43
+ 'backup:Create timestamped backup'
44
+ 'export:Export project as zip'
45
+ 'preview:Build and open document'
46
+ 'watch:Watch and auto-rebuild'
47
+ 'lint:Check for issues'
48
+ 'grammar:Check grammar and style'
49
+ 'annotate:Add comments to DOCX'
50
+ 'apply:Apply annotations as track changes'
51
+ 'comment:Interactive comment mode'
52
+ 'completions:Generate shell completions'
53
+ )
54
+
55
+ preview_formats=(
56
+ 'pdf:Preview PDF'
57
+ 'docx:Preview Word document'
58
+ )
59
+
60
+ build_formats=(
61
+ 'pdf:Build PDF'
62
+ 'docx:Build Word document'
63
+ 'tex:Build LaTeX'
64
+ 'all:Build all formats'
65
+ )
66
+
67
+ doi_actions=(
68
+ 'check:Validate DOIs'
69
+ 'lookup:Find missing DOIs'
70
+ 'fetch:Get BibTeX from DOI'
71
+ 'add:Add citation by DOI'
72
+ )
73
+
74
+ eq_actions=(
75
+ 'list:List equations'
76
+ 'extract:Extract to file'
77
+ 'convert:Convert to Word'
78
+ 'from-word:Extract from Word'
79
+ )
80
+
81
+ help_topics=(
82
+ 'workflow:Review workflow'
83
+ 'syntax:CriticMarkup syntax'
84
+ 'commands:All commands'
85
+ )
86
+
87
+ journals=(
88
+ 'nature:Nature journal'
89
+ 'science:Science journal'
90
+ 'plos:PLOS ONE'
91
+ 'cell:Cell journal'
92
+ 'ecology:Ecology journals'
93
+ 'custom:Custom profile'
94
+ )
95
+
96
+ case "$words[2]" in
97
+ build)
98
+ _describe -t formats 'format' build_formats
99
+ _arguments \
100
+ '--toc[Include table of contents]' \
101
+ '--show-changes[Show track changes in DOCX]' \
102
+ '--clean[Clean build files]'
103
+ ;;
104
+ new)
105
+ _arguments \
106
+ '--list[List templates]' \
107
+ '--template[Template name]:template:(paper minimal thesis proposal)'
108
+ ;;
109
+ doi)
110
+ _describe -t actions 'action' doi_actions
111
+ ;;
112
+ equations|eq)
113
+ _describe -t actions 'action' eq_actions
114
+ ;;
115
+ validate)
116
+ _arguments \
117
+ '--list[List journals]' \
118
+ '--journal[Journal name]:journal:($journals)'
119
+ ;;
120
+ help)
121
+ _describe -t topics 'topic' help_topics
122
+ ;;
123
+ config)
124
+ _values 'setting' 'user[Set user name]'
125
+ ;;
126
+ word-count|wc)
127
+ _arguments \
128
+ '--limit[Word limit]:number:' \
129
+ '--journal[Use journal word limit]:journal:'
130
+ ;;
131
+ preview)
132
+ _describe -t formats 'format' preview_formats
133
+ ;;
134
+ watch)
135
+ _arguments \
136
+ '--no-open[Do not open after build]'
137
+ _values 'format' 'pdf' 'docx' 'all'
138
+ ;;
139
+ lint)
140
+ _arguments \
141
+ '--fix[Auto-fix issues]'
142
+ ;;
143
+ grammar)
144
+ _arguments \
145
+ '--learn[Add word to dictionary]:word:' \
146
+ '--forget[Remove from dictionary]:word:' \
147
+ '--list[List dictionary words]' \
148
+ '--rules[List grammar rules]' \
149
+ '--no-scientific[Disable science rules]' \
150
+ '--severity[Minimum severity]:level:(error warning info)'
151
+ _files -g '*.md'
152
+ ;;
153
+ annotate)
154
+ _arguments \
155
+ '-m[Comment message]:text:' \
156
+ '-s[Search text]:text:' \
157
+ '-a[Author name]:name:'
158
+ _files -g '*.docx'
159
+ ;;
160
+ apply)
161
+ _arguments \
162
+ '-a[Author name]:name:'
163
+ _files -g '*.md'
164
+ ;;
165
+ comment)
166
+ _arguments \
167
+ '-a[Author name]:name:'
168
+ _files -g '*.docx'
169
+ ;;
170
+ completions)
171
+ _values 'shell' 'bash' 'zsh'
172
+ ;;
173
+ import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
174
+ _files -g '*.md' -g '*.docx'
175
+ ;;
176
+ resolve|reply)
177
+ _arguments \
178
+ '-n[Comment number]:number:' \
179
+ '-m[Reply message]:message:'
180
+ _files -g '*.md'
181
+ ;;
182
+ check|lookup|add|citations)
183
+ _files -g '*.bib'
184
+ ;;
185
+ merge)
186
+ _files -g '*.md' -g '*.docx'
187
+ ;;
188
+ backup)
189
+ _arguments \
190
+ '--name[Custom backup name]:name:' \
191
+ '--output[Output directory]:dir:_files -/'
192
+ ;;
193
+ export)
194
+ _arguments \
195
+ '--output[Output filename]:file:' \
196
+ '--include-output[Include built files]'
197
+ ;;
198
+ *)
199
+ _describe -t commands 'command' commands
200
+ _arguments \
201
+ '--help[Show help]' \
202
+ '--version[Show version]'
203
+ ;;
204
+ esac
205
+ }
206
+
207
+ _rev "$@"