docrev 0.9.11 → 0.9.14

package/lib/commands/sync.ts

@@ -1,706 +1,706 @@
-/**
- * SYNC command: Import feedback from Word/PDF back to section files
- *
- * Split from sections.ts for maintainability.
- */
-
-import {
-  chalk,
-  fs,
-  path,
-  fmt,
-  findFiles,
-  loadConfig,
-  extractSectionsFromText,
-  countAnnotations,
-  buildRegistry,
-  convertHardcodedRefs,
-  inlineDiffPreview,
-} from './context.js';
-import type { Command } from 'commander';
-import * as readline from 'readline';
-
-interface ImportStats {
-  insertions: number;
-  deletions: number;
-  substitutions: number;
-  comments: number;
-  total: number;
-}
-
-interface SyncOptions {
-  config: string;
-  dir: string;
-  crossref?: boolean;
-  diff?: boolean;
-  force?: boolean;
-  dryRun?: boolean;
-  /** Commander maps `--comments-only` (a positive flag) cleanly. `--no-overwrite`
-   * conflicts with the existing `overwrite` semantics in `--force`-style flags
-   * and Commander's `--no-X` convention assigns `options.x === false`. */
-  commentsOnly?: boolean;
-}
-
-/**
- * Register the sync command with the program
- */
-export function register(program: Command): void {
-  // ==========================================================================
-  // SYNC command - Import with section awareness
-  // ==========================================================================
-
-  program
-    .command('sync')
-    .alias('sections')
-    .description('Sync feedback from Word/PDF back to section files')
-    .argument('[file]', 'Word (.docx) or PDF file from reviewer (default: most recent)')
-    .argument('[sections...]', 'Specific sections to sync (default: all)')
-    .option('-c, --config <file>', 'Sections config file', 'sections.yaml')
-    .option('-d, --dir <directory>', 'Directory with section files', '.')
-    .option('--no-crossref', 'Skip converting hardcoded figure/table refs')
-    .option('--no-diff', 'Skip showing diff preview')
-    .option('--force', 'Overwrite files without conflict warning')
-    .option('--dry-run', 'Preview without writing files')
-    .option('--comments-only', 'Insert comments at fuzzy-matched anchors only; never modify existing prose or apply track changes (use when markdown was revised after the docx was sent for review)')
-    .action(async (docx: string | undefined, sections: string[], options: SyncOptions) => {
-      // Auto-detect most recent docx or pdf if not provided
-      if (!docx) {
-        const docxFiles = findFiles('.docx');
-        const pdfFiles = findFiles('.pdf');
-        const allFiles = [...docxFiles, ...pdfFiles];
-
-        if (allFiles.length === 0) {
-          console.error(fmt.status('error', 'No .docx or .pdf files found in current directory.'));
-          process.exit(1);
-        }
-        const sorted = allFiles
-          .map(f => ({ name: f, mtime: fs.statSync(f).mtime }))
-          .sort((a, b) => b.mtime.getTime() - a.mtime.getTime());
-        docx = sorted[0].name;
-        console.log(fmt.status('info', `Using most recent: ${docx}`));
-        console.log();
-      }
-
-      if (!fs.existsSync(docx)) {
-        console.error(fmt.status('error', `File not found: ${docx}`));
-        process.exit(1);
-      }
-
-      // Handle PDF files
-      if (docx.toLowerCase().endsWith('.pdf')) {
-        const { extractPdfComments, formatPdfComments, getPdfCommentStats } = await import('../pdf-import.js');
-
-        const spin = fmt.spinner(`Extracting comments from ${path.basename(docx)}...`).start();
-
-        try {
-          const comments = await extractPdfComments(docx);
-          spin.stop();
-
-          if (comments.length === 0) {
-            console.log(fmt.status('info', 'No comments found in PDF.'));
-            return;
-          }
-
-          const stats = getPdfCommentStats(comments);
-          console.log(fmt.header(`PDF Comments from ${path.basename(docx)}`));
-          console.log();
-          console.log(formatPdfComments(comments));
-          console.log();
-
-          const authorList = Object.entries(stats.byAuthor)
-            .map(([author, count]) => `${author} (${count})`)
-            .join(', ');
-          console.log(chalk.dim(`Total: ${stats.total} comments from ${authorList}`));
-          console.log();
-
-          const configPath = path.resolve(options.dir, options.config);
-          if (fs.existsSync(configPath) && !options.dryRun) {
-            const config = loadConfig(configPath);
-            const mainSection = config.sections?.[0];
-
-            if (mainSection && typeof mainSection === 'string') {
-              const mainPath = path.join(options.dir, mainSection);
-              if (fs.existsSync(mainPath)) {
-                console.log(chalk.dim(`Use 'rev pdf-comments ${docx} --append ${mainSection}' to add comments to markdown.`));
-              }
-            }
-          }
-        } catch (err) {
-          spin.stop();
-          const error = err as Error;
-          console.error(fmt.status('error', `Failed to extract PDF comments: ${error.message}`));
-          if (process.env.DEBUG) console.error(error.stack);
-          process.exit(1);
-        }
-        return;
-      }
-
-      const configPath = path.resolve(options.dir, options.config);
-      if (!fs.existsSync(configPath)) {
-        console.error(fmt.status('error', `Config not found: ${configPath}`));
-        console.error(chalk.dim('  Run "rev init" first to generate sections.yaml'));
-        process.exit(1);
-      }
-
-      // --comments-only: import comments only, never modify existing prose.
-      // Use this when the markdown has been revised since the docx was sent
-      // out — track changes from a stale draft would clobber newer edits.
-      if (options.commentsOnly) {
-        await syncCommentsOnly(docx, sections, options, configPath);
-        return;
-      }
-
-      // Check pandoc availability upfront and warn
-      const { hasPandoc, getInstallInstructions } = await import('../dependencies.js');
-      if (!hasPandoc()) {
-        console.log(fmt.status('warning', `Pandoc not installed. Track changes will be extracted from XML (formatting may differ).`));
-        console.log(chalk.dim(`  Install for best results: ${getInstallInstructions('pandoc')}`));
-        console.log();
-      }
-
-      const spin = fmt.spinner(`Importing ${path.basename(docx)}...`).start();
-
-      try {
-        const config = loadConfig(configPath);
-        const { importFromWord, extractWordComments, extractCommentAnchors, insertCommentsIntoMarkdown, extractFromWord } = await import('../import.js');
-
-        let registry = null;
-        let totalRefConversions = 0;
-        if (options.crossref !== false) {
-          registry = buildRegistry(options.dir);
-        }
-
-        const comments = await extractWordComments(docx);
-        const { anchors, fullDocText: xmlDocText } = await extractCommentAnchors(docx);
-
-        // Extract Word text (uses pandoc if available, falls back to XML extraction)
-        const wordExtraction = await extractFromWord(docx, { mediaDir: options.dir });
-        let wordText = wordExtraction.text;
-        const wordTables = wordExtraction.tables || [];
-
-        // Log extraction messages (warnings about pandoc, track change stats, etc.)
-        for (const msg of wordExtraction.messages || []) {
-          if (msg.type === 'warning') {
-            spin.stop();
-            console.log(fmt.status('warning', msg.message));
-            spin.start();
-          }
-        }
-
-        // Restore crossref on FULL text BEFORE splitting into sections
-        // This ensures duplicate labels from track changes are handled correctly
-        // (the same figure may appear multiple times in old/new versions)
-        const { restoreCrossrefFromWord, restoreImagesFromRegistry } = await import('../import.js');
-        const crossrefResult = restoreCrossrefFromWord(wordText, options.dir);
-        wordText = crossrefResult.text;
-        if (crossrefResult.restored > 0) {
-          console.log(`Restored ${crossrefResult.restored} crossref reference(s)`);
-        }
-
-        // Also restore images from registry using shared restoredLabels
-        const imageRestoreResult = restoreImagesFromRegistry(wordText, options.dir, crossrefResult.restoredLabels);
-        wordText = imageRestoreResult.text;
-        if (imageRestoreResult.restored > 0) {
-          console.log(`Restored ${imageRestoreResult.restored} image(s) from registry`);
-        }
-
-        let wordSections = extractSectionsFromText(wordText, config.sections);
-
-        if (wordSections.length === 0) {
-          spin.stop();
-          console.error(fmt.status('warning', 'No sections detected in Word document.'));
-          console.error(chalk.dim('  Check that headings match sections.yaml'));
-          process.exit(1);
-        }
-
-        if (sections && sections.length > 0) {
-          const onlyList = sections.map(s => s.trim().toLowerCase());
-          wordSections = wordSections.filter(section => {
-            const fileName = section.file.replace(/\.md$/i, '').toLowerCase();
-            const header = section.header.toLowerCase();
-            return onlyList.some(name => fileName === name || fileName.includes(name) || header.includes(name));
-          });
-          if (wordSections.length === 0) {
-            spin.stop();
-            console.error(fmt.status('error', `No sections matched: ${sections.join(', ')}`));
-            console.error(chalk.dim(`  Available: ${extractSectionsFromText(wordText, config.sections).map(s => s.file.replace(/\.md$/i, '')).join(', ')}`));
-            process.exit(1);
-          }
-        }
-
-        spin.stop();
-        console.log(fmt.header(`Import from ${path.basename(docx)}`));
-        console.log();
-
-        // Conflict detection
-        if (!options.force && !options.dryRun) {
-          const conflicts: Array<{ file: string; annotations: number }> = [];
-          for (const section of wordSections) {
-            const sectionPath = path.join(options.dir, section.file);
-            if (fs.existsSync(sectionPath)) {
-              const existing = fs.readFileSync(sectionPath, 'utf-8');
-              const existingCounts = countAnnotations(existing);
-              if (existingCounts.total > 0) {
-                conflicts.push({
-                  file: section.file,
-                  annotations: existingCounts.total,
-                });
-              }
-            }
-          }
-
-          if (conflicts.length > 0) {
-            console.log(fmt.status('warning', 'Files with existing annotations will be overwritten:'));
-            for (const c of conflicts) {
-              console.log(chalk.yellow(`  - ${c.file} (${c.annotations} annotations)`));
-            }
-            console.log();
-
-            const rl = readline.createInterface({
-              input: process.stdin,
-              output: process.stdout,
-            });
-
-            const answer = await new Promise<string>((resolve) =>
-              rl.question(chalk.cyan('Continue and overwrite? [y/N] '), resolve)
-            );
-            rl.close();
-
-            if (answer.toLowerCase() !== 'y') {
-              console.log(chalk.dim('Aborted. Use --force to skip this check.'));
-              process.exit(0);
-            }
-            console.log();
-          }
-        }
-
-        const sectionResults: Array<{
-          file: string;
-          header: string;
-          status: string;
-          stats?: ImportStats;
-          refs?: number;
-        }> = [];
-        let totalChanges = 0;
-
-        // Calculate section boundaries in the XML document text for comment filtering
-        // Comment positions (docPosition) are relative to xmlDocText, NOT wordText
-        // So we must find section headers in xmlDocText to get matching boundaries
-        const sectionBoundaries: Array<{ file: string; start: number; end: number }> = [];
-        const xmlLower = xmlDocText.toLowerCase();
-
-        // Standard section header keywords to search for in XML
-        // Map from file name pattern to search terms
-        const sectionKeywords: Record<string, string[]> = {
-          'abstract': ['abstract', 'summary'],
-          'introduction': ['introduction', 'background'],
-          'methods': ['methods', 'materials and methods', 'methodology'],
-          'results': ['results'],
-          'discussion': ['discussion'],
-          'conclusion': ['conclusion', 'conclusions'],
-        };
-
-        // Helper: find section header (skip labels like "Methods:" in structured abstracts)
-        // Real section headers are NOT followed by ":" immediately
-        function findSectionHeader(text: string, keyword: string, startFrom: number = 0): number {
-          const lower = text.toLowerCase();
-          let idx = startFrom;
-          while ((idx = lower.indexOf(keyword, idx)) !== -1) {
-            // Check what follows the keyword
-            const afterKeyword = text.slice(idx + keyword.length, idx + keyword.length + 5);
-            // Skip if followed by ":" (this is a label, not a section header)
-            // Real headers are followed by text content, a newline, or a subheading
-            if (!afterKeyword.startsWith(':') && !afterKeyword.startsWith(' :')) {
-              return idx;
-            }
-            idx++;
-          }
-          return -1;
-        }
-
-        for (const section of wordSections) {
-          const fileBase = section.file.replace(/\.md$/i, '').toLowerCase();
-
-          // Get keywords for this section
-          const keywords = sectionKeywords[fileBase] || [fileBase];
-
-          // Find the first valid keyword that exists in XML (not a label)
-          let headerIdx = -1;
-          for (const kw of keywords) {
-            const idx = findSectionHeader(xmlDocText, kw, 0);
-            if (idx >= 0 && (headerIdx < 0 || idx < headerIdx)) {
-              headerIdx = idx;
-            }
-          }
-
-          if (headerIdx >= 0) {
-            // Find the next section's start to determine end boundary
-            let nextHeaderIdx = xmlDocText.length;
-            const sectionIdx = wordSections.indexOf(section);
-            if (sectionIdx < wordSections.length - 1) {
-              const nextFileBase = wordSections[sectionIdx + 1].file.replace(/\.md$/i, '').toLowerCase();
-              const nextKeywords = sectionKeywords[nextFileBase] || [nextFileBase];
-              for (const nkw of nextKeywords) {
-                const foundNext = findSectionHeader(xmlDocText, nkw, headerIdx + 10);
-                if (foundNext >= 0 && foundNext < nextHeaderIdx) {
-                  nextHeaderIdx = foundNext;
-                }
-              }
-            }
-
-            sectionBoundaries.push({
-              file: section.file,
-              start: headerIdx,
-              end: nextHeaderIdx
-            });
-
-          }
-        }
-
-        // Document length is the XML text length (same coordinate system as docPosition)
-        const docLength = xmlDocText.length;
-
-        for (const section of wordSections) {
-          const sectionPath = path.join(options.dir, section.file);
-
-          if (!fs.existsSync(sectionPath)) {
-            sectionResults.push({
-              file: section.file,
-              header: section.header,
-              status: 'skipped',
-              stats: undefined,
-            });
-            continue;
-          }
-
-          const result = await importFromWord(docx, sectionPath, {
-            sectionContent: section.content,
-            author: 'Reviewer',
-            wordTables: wordTables,
-          });
-
-          let { annotated, stats } = result;
-
-          let refConversions: Array<{ from: string; to: string }> = [];
-          if (registry && options.crossref !== false) {
-            const crossrefResult = convertHardcodedRefs(annotated, registry);
-            annotated = crossrefResult.converted;
-            refConversions = crossrefResult.conversions;
-            totalRefConversions += refConversions.length;
-          }
-
-          let commentsInserted = 0;
-          if (comments.length > 0 && anchors.size > 0) {
-            // Filter comments to only those that belong to this section
-            // Use exact position matching: docPosition is in xmlDocText coordinates,
-            // and sectionBoundaries are also in xmlDocText coordinates (same source!)
-            const boundary = sectionBoundaries.find(b => b.file === section.file);
-            const isFirstSection = wordSections.indexOf(section) === 0;
-            const firstBoundaryStart = sectionBoundaries.length > 0 ? Math.min(...sectionBoundaries.map(b => b.start)) : 0;
-
-            const sectionComments = comments.filter((c: any) => {
-              const anchorData = anchors.get(c.id);
-              if (!anchorData) return false;
-
-              // Use exact position - no scaling needed since both are in xmlDocText coordinates
-              if (anchorData.docPosition !== undefined && boundary) {
-                // Include comments within section boundaries
-                if (anchorData.docPosition >= boundary.start && anchorData.docPosition < boundary.end) {
-                  return true;
-                }
-                // Also include "outside" comments (before first section) in the first section file
-                if (isFirstSection && anchorData.docPosition < firstBoundaryStart) {
-                  return true;
-                }
-              }
-
-              return false;
-            });
-
-            if (process.env.DEBUG) {
-              console.log(`[DEBUG] ${section.file}: ${sectionComments.length} comments to place (boundary: ${boundary?.start}-${boundary?.end})`);
-            }
-
-            if (sectionComments.length > 0) {
-              // Use a more robust pattern that handles < in comment text
-              const commentPattern = /\{>>.*?<<\}/gs;
-              const beforeCount = (annotated.match(commentPattern) || []).length;
-              annotated = insertCommentsIntoMarkdown(annotated, sectionComments, anchors, {
-                quiet: !process.env.DEBUG,
-                sectionBoundary: boundary  // Pass section boundary for position-based insertion
-              });
-              const afterCount = (annotated.match(commentPattern) || []).length;
-              commentsInserted = afterCount - beforeCount;
-
-              if (process.env.DEBUG) {
-                console.log(`[DEBUG] ${section.file}: inserted ${commentsInserted} of ${sectionComments.length} comments`);
-              }
-
-              if (commentsInserted > 0) {
-                stats.comments = (stats.comments || 0) + commentsInserted;
-              }
-            }
-          }
-
-          totalChanges += stats.total;
-
-          sectionResults.push({
-            file: section.file,
-            header: section.header,
-            status: 'ok',
-            stats,
-            refs: refConversions.length,
-          });
-
-          if (!options.dryRun) {
-            // Preserve any preamble content (YAML frontmatter, author blocks, metadata)
-            // that exists before the first heading in the original file.
-            // This content is never included in the Word build output, so it won't
-            // appear in the Word doc and would otherwise be lost during sync.
-            const originalContent = fs.readFileSync(sectionPath, 'utf-8');
-            const firstHeadingMatch = originalContent.match(/^(#\s)/m);
-            if (firstHeadingMatch && firstHeadingMatch.index !== undefined && firstHeadingMatch.index > 0) {
-              const preamble = originalContent.slice(0, firstHeadingMatch.index);
-              // Only prepend if preamble has non-whitespace content
-              if (preamble.trim().length > 0) {
-                annotated = preamble + annotated;
-              }
-            }
-            fs.writeFileSync(sectionPath, annotated, 'utf-8');
-          }
-        }
-
-        const tableRows = sectionResults.map((r) => {
-          if (r.status === 'skipped') {
-            return [
-              chalk.dim(r.file),
-              chalk.dim(r.header.slice(0, 25)),
-              chalk.yellow('skipped'),
-              '',
-              '',
-              '',
-              '',
-            ];
-          }
-          const s = r.stats!;
-          return [
-            chalk.bold(r.file),
-            r.header.length > 25 ? r.header.slice(0, 22) + '...' : r.header,
-            s.insertions > 0 ? chalk.green(`+${s.insertions}`) : chalk.dim('-'),
-            s.deletions > 0 ? chalk.red(`-${s.deletions}`) : chalk.dim('-'),
-            s.substitutions > 0 ? chalk.yellow(`~${s.substitutions}`) : chalk.dim('-'),
-            s.comments > 0 ? chalk.blue(`#${s.comments}`) : chalk.dim('-'),
-            r.refs! > 0 ? chalk.magenta(`@${r.refs}`) : chalk.dim('-'),
-          ];
-        });
-
-        console.log(fmt.table(
-          ['File', 'Section', 'Ins', 'Del', 'Sub', 'Cmt', 'Ref'],
-          tableRows,
-          { align: ['left', 'left', 'right', 'right', 'right', 'right', 'right'] }
-        ));
-        console.log();
-
-        if (options.diff !== false && totalChanges > 0) {
-          console.log(fmt.header('Changes Preview'));
-          console.log();
-          for (const result of sectionResults) {
-            if (result.status === 'ok' && result.stats && result.stats.total > 0) {
-              const sectionPath = path.join(options.dir, result.file);
-              if (fs.existsSync(sectionPath)) {
-                const content = fs.readFileSync(sectionPath, 'utf-8');
-                const preview = inlineDiffPreview(content, { maxLines: 3 });
-                if (preview) {
-                  console.log(chalk.bold(result.file) + ':');
-                  console.log(preview);
-                  console.log();
-                }
-              }
-            }
-          }
-        }
-
-        if (options.dryRun) {
-          console.log(fmt.box(chalk.yellow('Dry run - no files written'), { padding: 0 }));
-        } else if (totalChanges > 0 || totalRefConversions > 0 || comments.length > 0) {
-          const summaryLines: string[] = [];
-          summaryLines.push(`${chalk.bold(wordSections.length)} sections processed`);
-          if (totalChanges > 0) summaryLines.push(`${chalk.bold(totalChanges)} annotations imported`);
-          if (comments.length > 0) summaryLines.push(`${chalk.bold(comments.length)} comments placed`);
-          if (totalRefConversions > 0) summaryLines.push(`${chalk.bold(totalRefConversions)} refs converted to @-syntax`);
-
-          console.log(fmt.box(summaryLines.join('\n'), { title: 'Summary', padding: 0 }));
-          console.log();
-          console.log(chalk.dim('Next steps:'));
-          console.log(chalk.dim('  1. rev review <section.md>  - Accept/reject changes'));
-          console.log(chalk.dim('  2. rev comments <section.md> - View/address comments'));
-          console.log(chalk.dim('  3. rev build docx  - Rebuild Word doc'));
-        } else {
-          console.log(fmt.status('success', 'No changes detected.'));
-        }
-      } catch (err) {
-        spin.stop();
-        const error = err as Error;
-        console.error(fmt.status('error', error.message));
-        if (process.env.DEBUG) console.error(error.stack);
-        process.exit(1);
-      }
-    });
-}
-
-/**
- * `sync --comments-only`: import only Word comments at fuzzy-matched anchors.
- *
- * Skips the Word→Markdown diff entirely (no track changes, no pandoc, no
- * prose modifications). Useful when the markdown has been edited after the
- * docx was sent for review — applying track changes from a stale draft
- * would overwrite newer edits.
- */
-async function syncCommentsOnly(
-  docx: string,
-  sectionFilter: string[] | undefined,
-  options: SyncOptions,
-  configPath: string,
-): Promise<void> {
-  const config = loadConfig(configPath);
-  const { extractWordComments, extractCommentAnchors, extractHeadings, insertCommentsIntoMarkdown } = await import('../import.js');
-  const { computeSectionBoundaries } = await import('./section-boundaries.js');
-
-  const spin = fmt.spinner(`Reading comments from ${path.basename(docx)}...`).start();
-
-  let comments;
-  let anchors;
-  let headings;
-  let fullDocText = '';
-  try {
-    comments = await extractWordComments(docx);
-    const result = await extractCommentAnchors(docx);
-    anchors = result.anchors;
-    fullDocText = result.fullDocText;
-    headings = await extractHeadings(docx);
-    spin.stop();
-  } catch (err) {
-    spin.stop();
-    const error = err as Error;
-    console.error(fmt.status('error', error.message));
-    process.exit(1);
-  }
-
-  console.log(fmt.header(`Comments from ${path.basename(docx)} (comments-only)`));
-  console.log();
-
-  if (comments.length === 0) {
-    console.log(fmt.status('info', 'No comments found in document.'));
-    return;
-  }
-
-  const boundaries = computeSectionBoundaries(config.sections, headings, fullDocText.length);
-
-  if (boundaries.length === 0) {
-    console.error(fmt.status('warning', 'No section headings detected in Word document.'));
-    console.error(chalk.dim('  Check that headers in sections.yaml match heading paragraphs in the docx.'));
-    process.exit(1);
-  }
-
-  // Apply optional section filter from CLI
-  let activeBoundaries = boundaries;
-  if (sectionFilter && sectionFilter.length > 0) {
-    const wanted = sectionFilter.map(s => s.trim().toLowerCase());
-    activeBoundaries = boundaries.filter(b => {
-      const base = b.file.replace(/\.md$/i, '').toLowerCase();
-      return wanted.some(name => base === name || base.includes(name));
-    });
-    if (activeBoundaries.length === 0) {
-      console.error(fmt.status('error', `No sections matched: ${sectionFilter.join(', ')}`));
-      process.exit(1);
-    }
-  }
-
-  const firstBoundaryStart = boundaries[0].start;
-  const results: Array<{ file: string; placed: number; deduped: number; unmatched: number; skipped: boolean }> = [];
-
-  for (const boundary of activeBoundaries) {
-    const sectionPath = path.join(options.dir, boundary.file);
-    if (!fs.existsSync(sectionPath)) {
-      results.push({ file: boundary.file, placed: 0, deduped: 0, unmatched: 0, skipped: true });
-      continue;
-    }
-
-    const isFirstSection = boundary === activeBoundaries[0];
-    const sectionComments = comments.filter((c: { id: string }) => {
-      const anchor = anchors.get(c.id);
-      if (!anchor || anchor.docPosition === undefined) return false;
-      if (anchor.docPosition >= boundary.start && anchor.docPosition < boundary.end) return true;
-      // Comments before the first heading land in the first matched section
-      if (isFirstSection && anchor.docPosition < firstBoundaryStart) return true;
-      return false;
-    });
-
-    if (sectionComments.length === 0) {
-      results.push({ file: boundary.file, placed: 0, deduped: 0, unmatched: 0, skipped: false });
-      continue;
-    }
-
-    const original = fs.readFileSync(sectionPath, 'utf-8');
-
-    const stats = { placed: 0, deduped: 0, unmatched: 0 };
-    const annotated = insertCommentsIntoMarkdown(original, sectionComments, anchors, {
-      quiet: !process.env.DEBUG,
-      sectionBoundary: { start: boundary.start, end: boundary.end },
-      wrapAnchor: false,
-      outStats: stats,
-    });
-
-    if (!options.dryRun && stats.placed > 0) {
-      fs.writeFileSync(sectionPath, annotated, 'utf-8');
-    }
-    results.push({ file: boundary.file, ...stats, skipped: false });
-  }
-
-  const tableRows = results.map(r => {
-    if (r.skipped) {
-      return [chalk.dim(r.file), chalk.yellow('missing'), '', '', ''];
-    }
-    return [
-      chalk.bold(r.file),
-      chalk.green(`${r.placed}`),
-      r.deduped > 0 ? chalk.cyan(`${r.deduped}`) : chalk.dim('-'),
-      r.unmatched > 0 ? chalk.yellow(`${r.unmatched}`) : chalk.dim('-'),
-      chalk.dim('comments only'),
-    ];
-  });
-
-  console.log(fmt.table(
-    ['File', 'Placed', 'Already', 'Unmatched', 'Mode'],
-    tableRows,
-    { align: ['left', 'right', 'right', 'right', 'left'] },
-  ));
-  console.log();
-
-  const totalPlaced = results.reduce((s, r) => s + r.placed, 0);
-  const totalDeduped = results.reduce((s, r) => s + r.deduped, 0);
-  const totalUnmatched = results.reduce((s, r) => s + r.unmatched, 0);
-
-  const lines: string[] = [];
-  lines.push(`${chalk.bold(comments.length)} comments in document`);
-  if (totalPlaced > 0) {
-    lines.push(`${chalk.bold(totalPlaced)} placed at anchors`);
-  }
-  if (totalDeduped > 0) {
-    lines.push(`${chalk.cyan(totalDeduped)} already present (skipped to avoid duplication)`);
-  }
-  if (totalUnmatched > 0) {
-    lines.push(`${chalk.yellow(totalUnmatched)} unmatched (no anchor in current prose)`);
-  }
-  if (options.dryRun) {
-    lines.push(chalk.yellow('Dry run — no files written'));
-  } else if (totalPlaced > 0) {
-    lines.push(chalk.dim('Existing prose unchanged.'));
-  }
-  console.log(fmt.box(lines.join('\n'), { title: 'Summary', padding: 0 }));
-
-  if (totalUnmatched > 0) {
-    console.log();
-    console.log(chalk.dim('Tip: run "rev verify-anchors" to see which comments drifted.'));
-  }
-}
+/**
+ * SYNC command: Import feedback from Word/PDF back to section files
+ *
+ * Split from sections.ts for maintainability.
+ */
+
+import {
+  chalk,
+  fs,
+  path,
+  fmt,
+  findFiles,
+  loadConfig,
+  extractSectionsFromText,
+  countAnnotations,
+  buildRegistry,
+  convertHardcodedRefs,
+  inlineDiffPreview,
+} from './context.js';
+import type { Command } from 'commander';
+import * as readline from 'readline';
+
+interface ImportStats {
+  insertions: number;
+  deletions: number;
+  substitutions: number;
+  comments: number;
+  total: number;
+}
+
+interface SyncOptions {
+  config: string;
+  dir: string;
+  crossref?: boolean;
+  diff?: boolean;
+  force?: boolean;
+  dryRun?: boolean;
+  /** Commander maps `--comments-only` (a positive flag) cleanly. `--no-overwrite`
+   * conflicts with the existing `overwrite` semantics in `--force`-style flags
+   * and Commander's `--no-X` convention assigns `options.x === false`. */
+  commentsOnly?: boolean;
+}
+
+/**
+ * Register the sync command with the program
+ */
+export function register(program: Command): void {
+  // ==========================================================================
+  // SYNC command - Import with section awareness
+  // ==========================================================================
+
+  program
+    .command('sync')
+    .alias('sections')
+    .description('Sync feedback from Word/PDF back to section files')
+    .argument('[file]', 'Word (.docx) or PDF file from reviewer (default: most recent)')
+    .argument('[sections...]', 'Specific sections to sync (default: all)')
+    .option('-c, --config <file>', 'Sections config file', 'sections.yaml')
+    .option('-d, --dir <directory>', 'Directory with section files', '.')
+    .option('--no-crossref', 'Skip converting hardcoded figure/table refs')
+    .option('--no-diff', 'Skip showing diff preview')
+    .option('--force', 'Overwrite files without conflict warning')
+    .option('--dry-run', 'Preview without writing files')
+    .option('--comments-only', 'Insert comments at fuzzy-matched anchors only; never modify existing prose or apply track changes (use when markdown was revised after the docx was sent for review)')
+    .action(async (docx: string | undefined, sections: string[], options: SyncOptions) => {
+      // Auto-detect most recent docx or pdf if not provided
+      if (!docx) {
+        const docxFiles = findFiles('.docx');
+        const pdfFiles = findFiles('.pdf');
+        const allFiles = [...docxFiles, ...pdfFiles];
+
+        if (allFiles.length === 0) {
+          console.error(fmt.status('error', 'No .docx or .pdf files found in current directory.'));
+          process.exit(1);
+        }
+        const sorted = allFiles
+          .map(f => ({ name: f, mtime: fs.statSync(f).mtime }))
+          .sort((a, b) => b.mtime.getTime() - a.mtime.getTime());
+        docx = sorted[0].name;
+        console.log(fmt.status('info', `Using most recent: ${docx}`));
+        console.log();
+      }
+
+      if (!fs.existsSync(docx)) {
+        console.error(fmt.status('error', `File not found: ${docx}`));
+        process.exit(1);
+      }
+
+      // Handle PDF files
+      if (docx.toLowerCase().endsWith('.pdf')) {
+        const { extractPdfComments, formatPdfComments, getPdfCommentStats } = await import('../pdf-import.js');
+
+        const spin = fmt.spinner(`Extracting comments from ${path.basename(docx)}...`).start();
+
+        try {
+          const comments = await extractPdfComments(docx);
+          spin.stop();
+
+          if (comments.length === 0) {
+            console.log(fmt.status('info', 'No comments found in PDF.'));
+            return;
+          }
+
+          const stats = getPdfCommentStats(comments);
+          console.log(fmt.header(`PDF Comments from ${path.basename(docx)}`));
+          console.log();
+          console.log(formatPdfComments(comments));
+          console.log();
+
+          const authorList = Object.entries(stats.byAuthor)
+            .map(([author, count]) => `${author} (${count})`)
+            .join(', ');
+          console.log(chalk.dim(`Total: ${stats.total} comments from ${authorList}`));
+          console.log();
+
+          const configPath = path.resolve(options.dir, options.config);
+          if (fs.existsSync(configPath) && !options.dryRun) {
+            const config = loadConfig(configPath);
+            const mainSection = config.sections?.[0];
+
+            if (mainSection && typeof mainSection === 'string') {
+              const mainPath = path.join(options.dir, mainSection);
+              if (fs.existsSync(mainPath)) {
+                console.log(chalk.dim(`Use 'rev pdf-comments ${docx} --append ${mainSection}' to add comments to markdown.`));
+              }
+            }
+          }
+        } catch (err) {
+          spin.stop();
+          const error = err as Error;
+          console.error(fmt.status('error', `Failed to extract PDF comments: ${error.message}`));
+          if (process.env.DEBUG) console.error(error.stack);
+          process.exit(1);
+        }
+        return;
+      }
+
+      const configPath = path.resolve(options.dir, options.config);
+      if (!fs.existsSync(configPath)) {
+        console.error(fmt.status('error', `Config not found: ${configPath}`));
+        console.error(chalk.dim('  Run "rev init" first to generate sections.yaml'));
+        process.exit(1);
+      }
+
+      // --comments-only: import comments only, never modify existing prose.
+      // Use this when the markdown has been revised since the docx was sent
+      // out — track changes from a stale draft would clobber newer edits.
+      if (options.commentsOnly) {
+        await syncCommentsOnly(docx, sections, options, configPath);
+        return;
+      }
+
+      // Check pandoc availability upfront and warn
+      const { hasPandoc, getInstallInstructions } = await import('../dependencies.js');
+      if (!hasPandoc()) {
+        console.log(fmt.status('warning', `Pandoc not installed. Track changes will be extracted from XML (formatting may differ).`));
+        console.log(chalk.dim(`  Install for best results: ${getInstallInstructions('pandoc')}`));
+        console.log();
+      }
+
+      const spin = fmt.spinner(`Importing ${path.basename(docx)}...`).start();
+
+      try {
+        const config = loadConfig(configPath);
+        const { importFromWord, extractWordComments, extractCommentAnchors, insertCommentsIntoMarkdown, extractFromWord } = await import('../import.js');
+
+        let registry = null;
+        let totalRefConversions = 0;
+        if (options.crossref !== false) {
+          registry = buildRegistry(options.dir);
+        }
+
+        const comments = await extractWordComments(docx);
+        const { anchors, fullDocText: xmlDocText } = await extractCommentAnchors(docx);
+
+        // Extract Word text (uses pandoc if available, falls back to XML extraction)
+        const wordExtraction = await extractFromWord(docx, { mediaDir: options.dir });
+        let wordText = wordExtraction.text;
+        const wordTables = wordExtraction.tables || [];
+
+        // Log extraction messages (warnings about pandoc, track change stats, etc.)
+        for (const msg of wordExtraction.messages || []) {
+          if (msg.type === 'warning') {
+            spin.stop();
+            console.log(fmt.status('warning', msg.message));
+            spin.start();
+          }
+        }
+
+        // Restore crossref on FULL text BEFORE splitting into sections
+        // This ensures duplicate labels from track changes are handled correctly
+        // (the same figure may appear multiple times in old/new versions)
+        const { restoreCrossrefFromWord, restoreImagesFromRegistry } = await import('../import.js');
+        const crossrefResult = restoreCrossrefFromWord(wordText, options.dir);
+        wordText = crossrefResult.text;
+        if (crossrefResult.restored > 0) {
+          console.log(`Restored ${crossrefResult.restored} crossref reference(s)`);
+        }
+
+        // Also restore images from registry using shared restoredLabels
+        const imageRestoreResult = restoreImagesFromRegistry(wordText, options.dir, crossrefResult.restoredLabels);
+        wordText = imageRestoreResult.text;
+        if (imageRestoreResult.restored > 0) {
+          console.log(`Restored ${imageRestoreResult.restored} image(s) from registry`);
+        }
+
+        let wordSections = extractSectionsFromText(wordText, config.sections);
+
+        if (wordSections.length === 0) {
+          spin.stop();
+          console.error(fmt.status('warning', 'No sections detected in Word document.'));
+          console.error(chalk.dim('  Check that headings match sections.yaml'));
+          process.exit(1);
+        }
+
+        if (sections && sections.length > 0) {
+          const onlyList = sections.map(s => s.trim().toLowerCase());
+          wordSections = wordSections.filter(section => {
+            const fileName = section.file.replace(/\.md$/i, '').toLowerCase();
+            const header = section.header.toLowerCase();
+            return onlyList.some(name => fileName === name || fileName.includes(name) || header.includes(name));
+          });
+          if (wordSections.length === 0) {
+            spin.stop();
+            console.error(fmt.status('error', `No sections matched: ${sections.join(', ')}`));
+            console.error(chalk.dim(`  Available: ${extractSectionsFromText(wordText, config.sections).map(s => s.file.replace(/\.md$/i, '')).join(', ')}`));
+            process.exit(1);
+          }
+        }
+
+        spin.stop();
+        console.log(fmt.header(`Import from ${path.basename(docx)}`));
+        console.log();
+
+        // Conflict detection
+        if (!options.force && !options.dryRun) {
+          const conflicts: Array<{ file: string; annotations: number }> = [];
+          for (const section of wordSections) {
+            const sectionPath = path.join(options.dir, section.file);
+            if (fs.existsSync(sectionPath)) {
+              const existing = fs.readFileSync(sectionPath, 'utf-8');
+              const existingCounts = countAnnotations(existing);
+              if (existingCounts.total > 0) {
+                conflicts.push({
+                  file: section.file,
+                  annotations: existingCounts.total,
+                });
+              }
+            }
+          }
+
+          if (conflicts.length > 0) {
+            console.log(fmt.status('warning', 'Files with existing annotations will be overwritten:'));
+            for (const c of conflicts) {
+              console.log(chalk.yellow(`  - ${c.file} (${c.annotations} annotations)`));
+            }
+            console.log();
+
+            const rl = readline.createInterface({
+              input: process.stdin,
+              output: process.stdout,
+            });
+
+            const answer = await new Promise<string>((resolve) =>
+              rl.question(chalk.cyan('Continue and overwrite? [y/N] '), resolve)
+            );
+            rl.close();
+
+            if (answer.toLowerCase() !== 'y') {
+              console.log(chalk.dim('Aborted. Use --force to skip this check.'));
+              process.exit(0);
+            }
+            console.log();
+          }
+        }
+
+        const sectionResults: Array<{
+          file: string;
+          header: string;
+          status: string;
+          stats?: ImportStats;
+          refs?: number;
+        }> = [];
+        let totalChanges = 0;
+
+        // Calculate section boundaries in the XML document text for comment filtering
+        // Comment positions (docPosition) are relative to xmlDocText, NOT wordText
+        // So we must find section headers in xmlDocText to get matching boundaries
+        const sectionBoundaries: Array<{ file: string; start: number; end: number }> = [];
+        const xmlLower = xmlDocText.toLowerCase();
+
+        // Standard section header keywords to search for in XML
+        // Map from file name pattern to search terms
+        const sectionKeywords: Record<string, string[]> = {
+          'abstract': ['abstract', 'summary'],
+          'introduction': ['introduction', 'background'],
+          'methods': ['methods', 'materials and methods', 'methodology'],
+          'results': ['results'],
+          'discussion': ['discussion'],
+          'conclusion': ['conclusion', 'conclusions'],
+        };
+
+        // Helper: find section header (skip labels like "Methods:" in structured abstracts)
+        // Real section headers are NOT followed by ":" immediately
+        function findSectionHeader(text: string, keyword: string, startFrom: number = 0): number {
+          const lower = text.toLowerCase();
+          let idx = startFrom;
+          while ((idx = lower.indexOf(keyword, idx)) !== -1) {
+            // Check what follows the keyword
+            const afterKeyword = text.slice(idx + keyword.length, idx + keyword.length + 5);
+            // Skip if followed by ":" (this is a label, not a section header)
+            // Real headers are followed by text content, a newline, or a subheading
+            if (!afterKeyword.startsWith(':') && !afterKeyword.startsWith(' :')) {
+              return idx;
+            }
+            idx++;
+          }
+          return -1;
+        }
+
+        for (const section of wordSections) {
+          const fileBase = section.file.replace(/\.md$/i, '').toLowerCase();
+
+          // Get keywords for this section
+          const keywords = sectionKeywords[fileBase] || [fileBase];
+
+          // Find the first valid keyword that exists in XML (not a label)
+          let headerIdx = -1;
+          for (const kw of keywords) {
+            const idx = findSectionHeader(xmlDocText, kw, 0);
+            if (idx >= 0 && (headerIdx < 0 || idx < headerIdx)) {
+              headerIdx = idx;
+            }
+          }
+
+          if (headerIdx >= 0) {
+            // Find the next section's start to determine end boundary
+            let nextHeaderIdx = xmlDocText.length;
+            const sectionIdx = wordSections.indexOf(section);
+            if (sectionIdx < wordSections.length - 1) {
+              const nextFileBase = wordSections[sectionIdx + 1].file.replace(/\.md$/i, '').toLowerCase();
+              const nextKeywords = sectionKeywords[nextFileBase] || [nextFileBase];
+              for (const nkw of nextKeywords) {
+                const foundNext = findSectionHeader(xmlDocText, nkw, headerIdx + 10);
+                if (foundNext >= 0 && foundNext < nextHeaderIdx) {
+                  nextHeaderIdx = foundNext;
+                }
+              }
+            }
+
+            sectionBoundaries.push({
+              file: section.file,
+              start: headerIdx,
+              end: nextHeaderIdx
+            });
+
+          }
+        }
+
+        // Document length is the XML text length (same coordinate system as docPosition)
+        const docLength = xmlDocText.length;
+
+        for (const section of wordSections) {
+          const sectionPath = path.join(options.dir, section.file);
+
+          if (!fs.existsSync(sectionPath)) {
+            sectionResults.push({
+              file: section.file,
+              header: section.header,
+              status: 'skipped',
+              stats: undefined,
+            });
+            continue;
+          }
+
+          const result = await importFromWord(docx, sectionPath, {
+            sectionContent: section.content,
+            author: 'Reviewer',
+            wordTables: wordTables,
+          });
+
+          let { annotated, stats } = result;
+
+          let refConversions: Array<{ from: string; to: string }> = [];
+          if (registry && options.crossref !== false) {
+            const crossrefResult = convertHardcodedRefs(annotated, registry);
+            annotated = crossrefResult.converted;
+            refConversions = crossrefResult.conversions;
+            totalRefConversions += refConversions.length;
+          }
+
+          let commentsInserted = 0;
+          if (comments.length > 0 && anchors.size > 0) {
+            // Filter comments to only those that belong to this section
+            // Use exact position matching: docPosition is in xmlDocText coordinates,
+            // and sectionBoundaries are also in xmlDocText coordinates (same source!)
+            const boundary = sectionBoundaries.find(b => b.file === section.file);
+            const isFirstSection = wordSections.indexOf(section) === 0;
+            const firstBoundaryStart = sectionBoundaries.length > 0 ? Math.min(...sectionBoundaries.map(b => b.start)) : 0;
+
+            const sectionComments = comments.filter((c: any) => {
+              const anchorData = anchors.get(c.id);
+              if (!anchorData) return false;
+
+              // Use exact position - no scaling needed since both are in xmlDocText coordinates
+              if (anchorData.docPosition !== undefined && boundary) {
+                // Include comments within section boundaries
+                if (anchorData.docPosition >= boundary.start && anchorData.docPosition < boundary.end) {
+                  return true;
+                }
+                // Also include "outside" comments (before first section) in the first section file
+                if (isFirstSection && anchorData.docPosition < firstBoundaryStart) {
+                  return true;
+                }
+              }
+
+              return false;
+            });
+
+            if (process.env.DEBUG) {
+              console.log(`[DEBUG] ${section.file}: ${sectionComments.length} comments to place (boundary: ${boundary?.start}-${boundary?.end})`);
+            }
+
+            if (sectionComments.length > 0) {
+              // Use a more robust pattern that handles < in comment text
+              const commentPattern = /\{>>.*?<<\}/gs;
+              const beforeCount = (annotated.match(commentPattern) || []).length;
+              annotated = insertCommentsIntoMarkdown(annotated, sectionComments, anchors, {
+                quiet: !process.env.DEBUG,
+                sectionBoundary: boundary  // Pass section boundary for position-based insertion
+              });
+              const afterCount = (annotated.match(commentPattern) || []).length;
+              commentsInserted = afterCount - beforeCount;
+
+              if (process.env.DEBUG) {
+                console.log(`[DEBUG] ${section.file}: inserted ${commentsInserted} of ${sectionComments.length} comments`);
+              }
+
+              if (commentsInserted > 0) {
+                stats.comments = (stats.comments || 0) + commentsInserted;
+              }
+            }
+          }
+
+          totalChanges += stats.total;
+
+          sectionResults.push({
+            file: section.file,
+            header: section.header,
+            status: 'ok',
+            stats,
+            refs: refConversions.length,
+          });
+
+          if (!options.dryRun) {
+            // Preserve any preamble content (YAML frontmatter, author blocks, metadata)
+            // that exists before the first heading in the original file.
+            // This content is never included in the Word build output, so it won't
+            // appear in the Word doc and would otherwise be lost during sync.
+            const originalContent = fs.readFileSync(sectionPath, 'utf-8');
+            const firstHeadingMatch = originalContent.match(/^(#\s)/m);
+            if (firstHeadingMatch && firstHeadingMatch.index !== undefined && firstHeadingMatch.index > 0) {
+              const preamble = originalContent.slice(0, firstHeadingMatch.index);
+              // Only prepend if preamble has non-whitespace content
+              if (preamble.trim().length > 0) {
+                annotated = preamble + annotated;
+              }
+            }
+            fs.writeFileSync(sectionPath, annotated, 'utf-8');
+          }
+        }
+
+        const tableRows = sectionResults.map((r) => {
+          if (r.status === 'skipped') {
+            return [
+              chalk.dim(r.file),
+              chalk.dim(r.header.slice(0, 25)),
+              chalk.yellow('skipped'),
+              '',
+              '',
+              '',
+              '',
+            ];
+          }
+          const s = r.stats!;
+          return [
+            chalk.bold(r.file),
+            r.header.length > 25 ? r.header.slice(0, 22) + '...' : r.header,
+            s.insertions > 0 ? chalk.green(`+${s.insertions}`) : chalk.dim('-'),
+            s.deletions > 0 ? chalk.red(`-${s.deletions}`) : chalk.dim('-'),
+            s.substitutions > 0 ? chalk.yellow(`~${s.substitutions}`) : chalk.dim('-'),
+            s.comments > 0 ? chalk.blue(`#${s.comments}`) : chalk.dim('-'),
+            r.refs! > 0 ? chalk.magenta(`@${r.refs}`) : chalk.dim('-'),
+          ];
+        });
+
+        console.log(fmt.table(
+          ['File', 'Section', 'Ins', 'Del', 'Sub', 'Cmt', 'Ref'],
+          tableRows,
+          { align: ['left', 'left', 'right', 'right', 'right', 'right', 'right'] }
+        ));
+        console.log();
+
+        if (options.diff !== false && totalChanges > 0) {
+          console.log(fmt.header('Changes Preview'));
+          console.log();
+          for (const result of sectionResults) {
+            if (result.status === 'ok' && result.stats && result.stats.total > 0) {
+              const sectionPath = path.join(options.dir, result.file);
+              if (fs.existsSync(sectionPath)) {
+                const content = fs.readFileSync(sectionPath, 'utf-8');
+                const preview = inlineDiffPreview(content, { maxLines: 3 });
+                if (preview) {
+                  console.log(chalk.bold(result.file) + ':');
+                  console.log(preview);
+                  console.log();
+                }
+              }
+            }
+          }
+        }
+
+        if (options.dryRun) {
+          console.log(fmt.box(chalk.yellow('Dry run - no files written'), { padding: 0 }));
+        } else if (totalChanges > 0 || totalRefConversions > 0 || comments.length > 0) {
+          const summaryLines: string[] = [];
+          summaryLines.push(`${chalk.bold(wordSections.length)} sections processed`);
+          if (totalChanges > 0) summaryLines.push(`${chalk.bold(totalChanges)} annotations imported`);
+          if (comments.length > 0) summaryLines.push(`${chalk.bold(comments.length)} comments placed`);
+          if (totalRefConversions > 0) summaryLines.push(`${chalk.bold(totalRefConversions)} refs converted to @-syntax`);
+
+          console.log(fmt.box(summaryLines.join('\n'), { title: 'Summary', padding: 0 }));
+          console.log();
+          console.log(chalk.dim('Next steps:'));
+          console.log(chalk.dim('  1. rev review <section.md>  - Accept/reject changes'));
+          console.log(chalk.dim('  2. rev comments <section.md> - View/address comments'));
+          console.log(chalk.dim('  3. rev build docx  - Rebuild Word doc'));
+        } else {
+          console.log(fmt.status('success', 'No changes detected.'));
+        }
+      } catch (err) {
+        spin.stop();
+        const error = err as Error;
+        console.error(fmt.status('error', error.message));
+        if (process.env.DEBUG) console.error(error.stack);
+        process.exit(1);
+      }
+    });
+}
+
+/**
+ * `sync --comments-only`: import only Word comments at fuzzy-matched anchors.
+ *
+ * Skips the Word→Markdown diff entirely (no track changes, no pandoc, no
+ * prose modifications). Useful when the markdown has been edited after the
+ * docx was sent for review — applying track changes from a stale draft
+ * would overwrite newer edits.
+ */
+async function syncCommentsOnly(
+  docx: string,
+  sectionFilter: string[] | undefined,
+  options: SyncOptions,
+  configPath: string,
+): Promise<void> {
+  const config = loadConfig(configPath);
+  const { extractWordComments, extractCommentAnchors, extractHeadings, insertCommentsIntoMarkdown } = await import('../import.js');
+  const { computeSectionBoundaries } = await import('./section-boundaries.js');
+
+  const spin = fmt.spinner(`Reading comments from ${path.basename(docx)}...`).start();
+
+  let comments;
+  let anchors;
+  let headings;
+  let fullDocText = '';
+  try {
+    comments = await extractWordComments(docx);
+    const result = await extractCommentAnchors(docx);
+    anchors = result.anchors;
+    fullDocText = result.fullDocText;
+    headings = await extractHeadings(docx);
+    spin.stop();
+  } catch (err) {
+    spin.stop();
+    const error = err as Error;
+    console.error(fmt.status('error', error.message));
+    process.exit(1);
+  }
+
+  console.log(fmt.header(`Comments from ${path.basename(docx)} (comments-only)`));
+  console.log();
+
+  if (comments.length === 0) {
+    console.log(fmt.status('info', 'No comments found in document.'));
+    return;
+  }
+
+  const boundaries = computeSectionBoundaries(config.sections, headings, fullDocText.length);
+
+  if (boundaries.length === 0) {
+    console.error(fmt.status('warning', 'No section headings detected in Word document.'));
+    console.error(chalk.dim('  Check that headers in sections.yaml match heading paragraphs in the docx.'));
+    process.exit(1);
+  }
+
+  // Apply optional section filter from CLI
+  let activeBoundaries = boundaries;
+  if (sectionFilter && sectionFilter.length > 0) {
+    const wanted = sectionFilter.map(s => s.trim().toLowerCase());
+    activeBoundaries = boundaries.filter(b => {
+      const base = b.file.replace(/\.md$/i, '').toLowerCase();
+      return wanted.some(name => base === name || base.includes(name));
+    });
+    if (activeBoundaries.length === 0) {
+      console.error(fmt.status('error', `No sections matched: ${sectionFilter.join(', ')}`));
+      process.exit(1);
+    }
+  }
+
+  const firstBoundaryStart = boundaries[0].start;
+  const results: Array<{ file: string; placed: number; deduped: number; unmatched: number; skipped: boolean }> = [];
+
+  for (const boundary of activeBoundaries) {
+    const sectionPath = path.join(options.dir, boundary.file);
+    if (!fs.existsSync(sectionPath)) {
+      results.push({ file: boundary.file, placed: 0, deduped: 0, unmatched: 0, skipped: true });
+      continue;
+    }
+
+    const isFirstSection = boundary === activeBoundaries[0];
+    const sectionComments = comments.filter((c: { id: string }) => {
+      const anchor = anchors.get(c.id);
+      if (!anchor || anchor.docPosition === undefined) return false;
+      if (anchor.docPosition >= boundary.start && anchor.docPosition < boundary.end) return true;
+      // Comments before the first heading land in the first matched section
+      if (isFirstSection && anchor.docPosition < firstBoundaryStart) return true;
+      return false;
+    });
+
+    if (sectionComments.length === 0) {
+      results.push({ file: boundary.file, placed: 0, deduped: 0, unmatched: 0, skipped: false });
+      continue;
+    }
+
+    const original = fs.readFileSync(sectionPath, 'utf-8');
+
+    const stats = { placed: 0, deduped: 0, unmatched: 0 };
+    const annotated = insertCommentsIntoMarkdown(original, sectionComments, anchors, {
+      quiet: !process.env.DEBUG,
+      sectionBoundary: { start: boundary.start, end: boundary.end },
+      wrapAnchor: false,
+      outStats: stats,
+    });
+
+    if (!options.dryRun && stats.placed > 0) {
+      fs.writeFileSync(sectionPath, annotated, 'utf-8');
+    }
+    results.push({ file: boundary.file, ...stats, skipped: false });
+  }
+
+  const tableRows = results.map(r => {
+    if (r.skipped) {
+      return [chalk.dim(r.file), chalk.yellow('missing'), '', '', ''];
+    }
+    return [
+      chalk.bold(r.file),
+      chalk.green(`${r.placed}`),
+      r.deduped > 0 ? chalk.cyan(`${r.deduped}`) : chalk.dim('-'),
+      r.unmatched > 0 ? chalk.yellow(`${r.unmatched}`) : chalk.dim('-'),
+      chalk.dim('comments only'),
+    ];
+  });
+
+  console.log(fmt.table(
+    ['File', 'Placed', 'Already', 'Unmatched', 'Mode'],
+    tableRows,
+    { align: ['left', 'right', 'right', 'right', 'left'] },
+  ));
+  console.log();
+
+  const totalPlaced = results.reduce((s, r) => s + r.placed, 0);
+  const totalDeduped = results.reduce((s, r) => s + r.deduped, 0);
+  const totalUnmatched = results.reduce((s, r) => s + r.unmatched, 0);
+
+  const lines: string[] = [];
+  lines.push(`${chalk.bold(comments.length)} comments in document`);
+  if (totalPlaced > 0) {
+    lines.push(`${chalk.bold(totalPlaced)} placed at anchors`);
+  }
+  if (totalDeduped > 0) {
+    lines.push(`${chalk.cyan(totalDeduped)} already present (skipped to avoid duplication)`);
+  }
+  if (totalUnmatched > 0) {
+    lines.push(`${chalk.yellow(totalUnmatched)} unmatched (no anchor in current prose)`);
+  }
+  if (options.dryRun) {
+    lines.push(chalk.yellow('Dry run — no files written'));
+  } else if (totalPlaced > 0) {
+    lines.push(chalk.dim('Existing prose unchanged.'));
+  }
+  console.log(fmt.box(lines.join('\n'), { title: 'Summary', padding: 0 }));
+
+  if (totalUnmatched > 0) {
+    console.log();
+    console.log(chalk.dim('Tip: run "rev verify-anchors" to see which comments drifted.'));
+  }
+}